HHsearch alignment for GI: 254780648 and conserved domain: pfam08477
>pfam08477 Miro Miro-like protein. Mitochondrial Rho proteins (Miro-1 and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis.
Probab=98.95 E-value=5.9e-10 Score=80.18 Aligned_cols=113 Identities=13% Similarity=0.103 Sum_probs=75.2
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE--EEEEC--CEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 12442167775303541014540121211000000102--66329--868998226421247311677512344333335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG--IVKEG--YKEFILADIPGIIKNAHQGAGIGDRFLKHTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG--vv~~~--~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~ 237 (335)
T Consensus 2 ivvvG~~~vGKTSLi~r~~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~-------~~~~~~~~~~ 73 (118)
T pfam08477 2 VVVIGDKGSGKSSLLSQLVGGEF-PPEIPEEIQGDTLAVDTLEVDGDTELLHIWDFGGREELK-------FEHIIFMKTA 73 (118)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCHHHH-------HHHHHHCCCC
T ss_conf 99999899789999999983988-876667877776888999999928999999899967776-------6665422587
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 788752022221101346667899877766750598899997465
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQID 282 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiD 282 (335)
T Consensus 74 d~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~piilVGnK~D 118 (118)
T pfam08477 74 DAILLVYDLTDRESLNRVSRLIAWLPHLRKLGKKIPVILVGNKFD 118 (118)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 467899979987899999999999999982099998899996859