HHsearch alignment for GI: 254780648 and conserved domain: pfam09547
>pfam09547 Spore_IV_A Stage IV sporulation protein A (spore_IV_A). SpoIVA is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.74 E-value=0.00019 Score=46.83 Aligned_cols=160 Identities=22% Similarity=0.253 Sum_probs=88.6
Q ss_pred EEEEECCCCCCCEEEEEEC--CCCCHHHH----------HH-------HCCCEEC----CEE-EEE-C--CEEEEEECCC
Q ss_conf 1244216777530354101--45401212----------11-------0000001----026-632-9--8689982264
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVT--RAKPKIAD----------YP-------FTTLYPN----LGI-VKE-G--YKEFILADIP 214 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls--~ak~kIa~----------yp-------FTT~~P~----lGv-v~~-~--~~~~~i~D~P 214 (335)
T Consensus 20 iGVVGPVRTGKSTFIKrFMe~~VlPnI~~~~~keRa~DELPQS~aGktIMTTEPKFVP~eAv~I~l~~~~~~kVRLiDCV 99 (492)
T pfam09547 20 IGVVGPVRTGKSTFIKRFMELLVLPNIENEYKKERAKDELPQSGSGKTIMTTEPKFVPNEAVEIKLDDGLKFKVRLVDCV 99 (492)
T ss_pred EEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCEEEEECCCCEEEEEEEEEC
T ss_conf 99626720673669999999854688898778776430377678998133368876653104888369844899999652
Q ss_pred CC-CCCCC---CCCC-------CH---HHHHH--------HHHHHHHHHHHC--CCCC-----CCHHHHHHHHHHHHHHH
Q ss_conf 21-24731---1677-------51---23443--------333357887520--2222-----11013466678998777
Q gi|254780648|r 215 GI-IKNAH---QGAG-------IG---DRFLK--------HTERTHVLLHIV--SALE-----ENVQAAYQCILDELSAY 265 (335)
Q Consensus 215 Gl-IegA~---~~~g-------lG---~~FLr--------hIer~~vLl~VV--D~s~-----~d~~~~~~~I~~EL~~y 265 (335)
T Consensus 100 GY~V~gA~Gy~e~~~~RmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dIpRe~Y~eAEervI~ELk~- 178 (492)
T pfam09547 100 GYIVEGALGYEEEDGPRMVKTPWFDEEIPFEEAAEIGTRKVITEHSTIGLVVTTDGSITDIPRENYVEAEERVIEELKE- 178 (492)
T ss_pred CEEECCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH-
T ss_conf 5675575555468975130489878887868887646541331577144999568875676644423579999999997-
Q ss_pred HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 667505988999974658998899999999998629948999888788999999999999985
Q gi|254780648|r 266 NSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQILECLHDKIFS 328 (335)
Q Consensus 266 ~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~eL~~~I~e~L~~ 328 (335)
T Consensus 179 ----i~KPFiillNs~~P-~s~et~~L~~eL~ekY~v~Vl~vnc~~m-~~~DI~~Il~~vLyE 235 (492)
T pfam09547 179 ----IGKPFIILLNSQRP-YSEETKELRDELEEKYDVPVLPVNCAQM-TEEDITEILEEVLYE 235 (492)
T ss_pred ----HCCCEEEEEECCCC-CCHHHHHHHHHHHHHHCCCEEEEEHHHC-CHHHHHHHHHHHHHC
T ss_conf ----09988999838998-9989999999999985995799677975-999999999998633