HHsearch alignment for GI: 254780648 and conserved domain: smart00175

>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.66  E-value=2.4e-16  Score=118.87  Aligned_cols=156  Identities=19%  Similarity=0.198  Sum_probs=108.2

Q ss_pred             EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECC--EEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             1244216777530354101454012121100000010--2663298--68998226421247311677512344333335
Q gi|254780648|r  162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNL--GIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERT  237 (335)
Q Consensus       162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~l--Gvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~  237 (335)
T Consensus         3 i~vvG~~~vGKTsli~r~~~~~f-~~~~~-~Ti~~~~~~~~i~~~~~~~~l~iwDt~G~e----~~~~l~~---~~~~~~   73 (164)
T smart00175        3 IILIGDSGVGKSSLLSRFTDGKF-SEQYK-STIGVDFKTKTIEVDGKRVKLQIWDTAGQE----RFRSITS---SYYRGA   73 (164)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCC-CCCCC-CCCCEEEEEEEEEECCEEEEEEEEECCCCH----HHHHHHH---HHHCCC
T ss_conf             99999899779999999941999-99868-845666677999999999999999679944----6647799---883366


Q ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCCHH
Q ss_conf             7887520222211013466678998777667505988999974658998899-999999998629948999888788999
Q gi|254780648|r  238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHGIP  316 (335)
Q Consensus       238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~GI~  316 (335)
T Consensus        74 ~~~ilvfdi~~~~Sf~~i~~w~~~i~~~~~--~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAk~~~~v~  151 (164)
T smart00175       74 VGALLVYDITNRESFENLKNWLKELREYAD--PNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVE  151 (164)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHHCC--CCCCEEECCCCCCHHHHCCCCHHHHHHHHHHCCCEEEEECCCCCCCHH
T ss_conf             536884368998999999999999998679--998255116456856518799999999999849979998316690889


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999985
Q gi|254780648|r  317 QILECLHDKIFS  328 (335)
Q Consensus       317 eL~~~I~e~L~~  328 (335)
T Consensus       152 e~F~~l~~~i~k  163 (164)
T smart00175      152 EAFEELAREILK  163 (164)
T ss_pred             HHHHHHHHHHHC
T ss_conf             999999999971