HHsearch alignment for GI: 254780648 and conserved domain: smart00175
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.66 E-value=2.4e-16 Score=118.87 Aligned_cols=156 Identities=19% Similarity=0.198 Sum_probs=108.2
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECC--EEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 1244216777530354101454012121100000010--2663298--68998226421247311677512344333335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNL--GIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~l--Gvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~ 237 (335)
T Consensus 3 i~vvG~~~vGKTsli~r~~~~~f-~~~~~-~Ti~~~~~~~~i~~~~~~~~l~iwDt~G~e----~~~~l~~---~~~~~~ 73 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDGKF-SEQYK-STIGVDFKTKTIEVDGKRVKLQIWDTAGQE----RFRSITS---SYYRGA 73 (164)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCC-CCCCEEEEEEEEEECCEEEEEEEEECCCCH----HHHHHHH---HHHCCC
T ss_conf 99999899779999999941999-99868-845666677999999999999999679944----6647799---883366
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCCHH
Q ss_conf 7887520222211013466678998777667505988999974658998899-999999998629948999888788999
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHGIP 316 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~GI~ 316 (335)
T Consensus 74 ~~~ilvfdi~~~~Sf~~i~~w~~~i~~~~~--~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAk~~~~v~ 151 (164)
T smart00175 74 VGALLVYDITNRESFENLKNWLKELREYAD--PNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVE 151 (164)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHCC--CCCCEEECCCCCCHHHHCCCCHHHHHHHHHHCCCEEEEECCCCCCCHH
T ss_conf 536884368998999999999999998679--998255116456856518799999999999849979998316690889
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999985
Q gi|254780648|r 317 QILECLHDKIFS 328 (335)
Q Consensus 317 eL~~~I~e~L~~ 328 (335)
T Consensus 152 e~F~~l~~~i~k 163 (164)
T smart00175 152 EAFEELAREILK 163 (164)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999971