HHsearch alignment for GI: 254780648 and conserved domain: smart00177
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.78 E-value=4.4e-19 Score=135.52 Aligned_cols=153 Identities=20% Similarity=0.199 Sum_probs=103.4
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 12442167775303541014540121211000000102663298689982264212473116775123443333357887
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLL 241 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vLl 241 (335)
T Consensus 16 ililG~~~~GKTsil~~l~~~~~~-~~~--pTvg~~~~~~~~~~~~l~iwD~~Gq----e~~r~l~~~---Yy~~a~~iI 85 (175)
T smart00177 16 ILMVGLDAAGKTTILYKLKLGESV-TTI--PTIGFNVETVTYKNISFTVWDVGGQ----DKIRPLWRH---YYTNTQGLI 85 (175)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC-CCC--CCCCCEEEEEEECCEEEEEEECCCC----CCCCHHHHH---HCCCCCEEE
T ss_conf 999988999989999999659977-757--9788107999989899999989998----545536777---557761899
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHH--HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH----HHCCCCEEEEECCCCCCH
Q ss_conf 520222211013466678998777--66750598899997465899889999999999----862994899988878899
Q gi|254780648|r 242 HIVSALEENVQAAYQCILDELSAY--NSELRKKIEIVGLSQIDTVDSDTLARKKNELA----TQCGQVPFEFSSITGHGI 315 (335)
Q Consensus 242 ~VVD~s~~d~~~~~~~I~~EL~~y--~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~----~~~~~~vi~ISA~tg~GI 315 (335)
T Consensus 86 fVvD~sd~~~~~~~---~~~l~~~l~~~~~~~~piLil~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~i~~~SA~tG~GI 162 (175)
T smart00177 86 FVVDSNDRDRIDEA---REELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGL 162 (175)
T ss_pred EEEECCCHHHHHHH---HHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCHHHHCCCCEEEEEEECCCCCCH
T ss_conf 99866877899999---999999963153169869999845667678899999999686654079759998268789698
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999998
Q gi|254780648|r 316 PQILECLHDKIF 327 (335)
Q Consensus 316 ~eL~~~I~e~L~ 327 (335)
T Consensus 163 ~e~f~wL~~~ik 174 (175)
T smart00177 163 YEGLTWLSNNLK 174 (175)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999844