Query         gi|254780649|ref|YP_003065062.1| nicotinic acid mononucleotide adenylyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 216
No_of_seqs    115 out of 1961
Neff          7.7 
Searched_HMMs 13730
Date          Wed Jun  1 10:12:06 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780649.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1kr2a_ c.26.1.3 (A:) Nicotina 100.0       0       0  299.6  11.7  181   19-215     3-236 (271)
  2 d1nuua_ c.26.1.3 (A:) Cytosoli 100.0 1.4E-45       0  281.0  12.6  181   21-215     5-217 (233)
  3 d1k4ma_ c.26.1.3 (A:) Nicotina 100.0 2.6E-42       0  261.8  16.8  193   20-215     3-198 (213)
  4 d1jhda2 c.26.1.5 (A:174-396) A 100.0 1.8E-39 1.3E-43  245.4   1.3  181   22-215    23-206 (223)
  5 d1kama_ c.26.1.3 (A:) Nicotina 100.0   4E-34 2.9E-38  214.6  15.2  169   20-214     2-172 (189)
  6 d1ej2a_ c.26.1.3 (A:) Nicotina  99.9 1.5E-24 1.1E-28  159.3  13.1  144   20-214     1-145 (167)
  7 d1tfua_ c.26.1.3 (A:) Phosphop  99.9 1.7E-24 1.2E-28  159.0  10.4  144   20-215     1-144 (157)
  8 d1qjca_ c.26.1.3 (A:) Phosphop  99.9 2.3E-24 1.7E-28  158.2  11.0  141   21-214     1-143 (157)
  9 d1o6ba_ c.26.1.3 (A:) Phosphop  99.9 1.8E-23 1.3E-27  153.1  13.8  142   21-214     2-144 (163)
 10 d1od6a_ c.26.1.3 (A:) Phosphop  99.9 7.8E-24 5.7E-28  155.2  11.7  143   20-214     1-145 (160)
 11 d1vlha_ c.26.1.3 (A:) Phosphop  99.9 4.3E-25 3.1E-29  162.5   2.3   56   20-81      1-56  (157)
 12 d1f9aa_ c.26.1.3 (A:) Nicotina  99.9 4.1E-23   3E-27  151.0  12.2  141   20-214     1-142 (164)
 13 d1lw7a1 c.26.1.3 (A:57-219) Tr  99.7 5.9E-18 4.3E-22  121.3   6.8   63   20-84      2-71  (163)
 14 d1coza_ c.26.1.2 (A:) CTP:glyc  99.3 1.1E-12   8E-17   90.9   6.5   93   20-125     1-95  (126)
 15 d1mrza2 c.26.1.3 (A:2-158) FMN  98.5   1E-06 7.5E-11   56.4  10.9   96   22-128     2-104 (157)
 16 d1g8fa2 c.26.1.5 (A:169-389) A  98.2 1.9E-05 1.4E-09   49.1  11.5  158   27-211    27-203 (221)
 17 d1x6va2 c.26.1.5 (A:390-624) A  98.0   8E-05 5.8E-09   45.5  11.9  158   21-211    25-212 (235)
 18 d1v47a2 c.26.1.5 (A:136-349) A  97.9 4.9E-05 3.6E-09   46.8   9.2  157   28-211    28-197 (214)
 19 d1kjqa2 c.30.1.1 (A:2-112) Gly  82.6    0.84 6.1E-05   22.3   4.4   90   10-110     2-95  (111)
 20 d1ihoa_ c.26.1.4 (A:) Pantothe  63.0     4.1  0.0003   18.4   3.9   59   19-81     21-85  (282)
 21 d1luca_ c.1.16.1 (A:) Bacteria  53.2     6.6 0.00048   17.2   3.8   35   20-54      1-41  (355)
 22 d1t35a_ c.129.1.1 (A:) Hypothe  51.7     6.2 0.00045   17.3   3.2   30   21-50      3-32  (179)
 23 d1v8fa_ c.26.1.4 (A:) Pantothe  43.2     9.6  0.0007   16.2   6.3   58   20-81     17-80  (276)
 24 d1jila_ c.26.1.1 (A:) Tyrosyl-  42.6     5.3 0.00039   17.7   1.7   33   21-55     31-69  (323)
 25 d2bisa1 c.87.1.8 (A:1-437) Gly  39.9      11 0.00079   15.9   4.9   16   20-35      1-16  (437)
 26 d1xpua3 c.37.1.11 (A:129-417)   39.5     5.7 0.00042   17.5   1.5   36    8-47     32-67  (289)
 27 d2jdid3 c.37.1.11 (D:82-357) C  36.2     5.2 0.00038   17.8   0.9   45   12-60     61-108 (276)
 28 d3tata_ c.67.1.1 (A:) Aromatic  35.7      13 0.00092   15.5   2.9   40   49-91    173-212 (397)
 29 d1weha_ c.129.1.1 (A:) Hypothe  34.6      13 0.00096   15.4   3.5   29   20-48      1-30  (171)
 30 d1e4ea1 c.30.1.2 (A:2-131) D-a  34.6      13 0.00096   15.4   4.3   44   19-62      2-48  (130)
 31 d1h3fa1 c.26.1.1 (A:5-347) Tyr  33.5      14   0.001   15.3   3.7   40   20-60     32-76  (343)
 32 d1fyea_ c.23.16.4 (A:) Asparty  32.7      14   0.001   15.3   8.8   96   20-135     1-100 (229)
 33 d2ts1a_ c.26.1.1 (A:) Tyrosyl-  32.4     6.2 0.00046   17.3   0.8   34   20-55     29-68  (319)
 34 d2r5fa1 c.124.1.8 (A:59-316) T  30.2      16  0.0011   15.0   3.1   25   36-60      4-28  (258)
 35 d1mb4a1 c.2.1.3 (A:1-132,A:355  29.6      11 0.00079   15.9   1.6   38   20-61      1-40  (147)
 36 d2nx2a1 c.129.1.2 (A:1-177) Hy  28.7      17  0.0012   14.8   4.9   52   99-152    56-113 (177)
 37 d1b74a1 c.78.2.1 (A:1-105) Glu  28.5      17  0.0012   14.8   6.1   83   20-113     1-86  (105)
 38 d3efba1 c.124.1.8 (A:11-265) S  27.1      18  0.0013   14.7   3.9   81   36-125     2-87  (255)
 39 d2ay1a_ c.67.1.1 (A:) Aromatic  26.5      18  0.0013   14.6   4.4   41   48-91    168-208 (394)
 40 d2cvoa1 c.2.1.3 (A:68-218,A:38  26.4      15  0.0011   15.1   1.9   43   16-63      2-44  (183)
 41 d2jdia3 c.37.1.11 (A:95-379) C  25.2     9.8 0.00072   16.2   0.7   22   12-33     61-82  (285)
 42 d1c7na_ c.67.1.3 (A:) Cystalys  25.1      19  0.0014   14.5   3.8   38   50-90    165-202 (394)
 43 d1ydhb_ c.129.1.1 (B:) Hypothe  24.8      20  0.0014   14.4   3.6   29   20-48      3-31  (181)
 44 d2okga1 c.124.1.8 (A:89-338) C  24.1      20  0.0015   14.4   3.5   92   37-142     7-109 (250)
 45 d2a84a1 c.26.1.4 (A:3-288) Pan  23.5      21  0.0015   14.3   3.8   42   18-62     28-69  (286)
 46 d2q4oa1 c.129.1.1 (A:8-190) Hy  23.4      21  0.0015   14.3   4.4   29   20-48      7-35  (183)
 47 d7aata_ c.67.1.1 (A:) Aspartat  22.0      22  0.0016   14.1   4.4   40   49-91    175-214 (401)
 48 d2iw1a1 c.87.1.8 (A:2-371) Lip  22.0      22  0.0016   14.1   7.8   53   97-149   209-277 (370)
 49 d1jaya_ c.2.1.6 (A:) Coenzyme   21.5      18  0.0013   14.6   1.5   29   20-54      1-29  (212)
 50 d1weka_ c.129.1.1 (A:) Hypothe  21.5      21  0.0015   14.3   1.8   40    7-47     22-61  (208)
 51 d1fx0a3 c.37.1.11 (A:97-372) C  20.8      12 0.00089   15.6   0.5   32   12-47     60-91  (276)

No 1  
>d1kr2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=0  Score=299.62  Aligned_cols=181  Identities=18%  Similarity=0.155  Sum_probs=146.2

Q ss_pred             CCEEEEECCCCCCCCHHHHHHHHHHHHHC------CCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCCCCCH
Q ss_conf             87899827789713389999999999862------998899997589987555668899999999863104-75321342
Q gi|254780649|r   19 GMKIGLFGGNFNPPHHGHIEIAQIAIKKL------NLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIK-NPRIRITA   91 (216)
Q Consensus        19 ~mkIgifGGSFdPiH~gHl~ia~~~~~~l------~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~-~~~i~v~~   91 (216)
                      .-.|++|||||||||+||+.+|+.|++.+      .+|+++|+|++.+|+|  +..++++||++||++|++ .+++.|++
T Consensus         3 ~~~v~l~~GSFdP~H~GHl~ia~~a~~~l~~~~~~~~~~~~~~P~~~~~~k--~~~~s~~~Rl~Ml~la~~~~~~~~vs~   80 (271)
T d1kr2a_           3 TEVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDAYKK--KGLIPAYHRVIMAELATKNSKWVEVDT   80 (271)
T ss_dssp             EEEEEEEEECCTTCCHHHHHHHHHHHHHHHHTSSEEEEEEEEEECCGGGCC--TTCCCHHHHHHHHHHHTTTCSSEEECC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC--CCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             638999704467423999999999999974425615467999648998767--788999999999999985699889952


Q ss_pred             HHHHHH-HHHHHHHHHHHHCCC----------------------------------------CCCCEEEECCCCCHHHHH
Q ss_conf             553100-032899999972013----------------------------------------678438961688135777
Q gi|254780649|r   92 FEAYLN-HTETFHTILQVKKHN----------------------------------------KSVNFVWIMGADNIKSFH  130 (216)
Q Consensus        92 ~E~~~~-~syT~dtL~~lk~~~----------------------------------------p~~~l~fiiG~D~l~~l~  130 (216)
                      +|.+++ ++||+|||++++++|                                        |+.+++||||+|++.+|.
T Consensus        81 ~E~~~~~~syTidTl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~fiiG~D~l~~~~  160 (271)
T d1kr2a_          81 WESLQKEWKETLKVLRHHQEKLEASDCDHQQNSPTLERPGRKRKWTETQDSSQKKSLEPKTKAVPKVKLLCGADLLESFA  160 (271)
T ss_dssp             HHHHCSSCCCHHHHHHHHHHHHHC--------------------------------------CCCEEEEEEEHHHHHGGG
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEECHHHHHHHH
T ss_conf             14306898618999999999832233211125543222222122322221000001123468875089986145887643


Q ss_pred             HHHHH-----HHHHHHCCEEEEECCCCCHHHHCCHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHH
Q ss_conf             77619-----9999758989993899871432158999986325881233454205898099980746886889999999
Q gi|254780649|r  131 QWHHW-----KRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCTTSPPSWLFIHDRHHIISSTAIRKKI  205 (216)
Q Consensus       131 ~W~~~-----~~ll~~~~iiV~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ISST~IR~~l  205 (216)
                      +|+.|     ++|++.++|+|++|+|+.......              ....+.....+.+++.+.+.++||||+||++|
T Consensus       161 ~~~~wk~~~~~~il~~~~liV~~R~g~~~~~~~~--------------~~~~l~~~~~~i~~~~~~~~~~ISST~IR~~i  226 (271)
T d1kr2a_         161 VPNLWKSEDITQIVANYGLICVTRAGNDAQKFIY--------------ESDVLWKHRSNIHVVNEWIANDISSTKIRRAL  226 (271)
T ss_dssp             STTTSCHHHHHHHHHHTCEEEEESCHHHHHHHHH--------------TCHHHHHTGGGEEEEECCSEECCCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHCCEEEEECCCCCHHHHHH--------------HHHHHHHCCCCEEEECCCCCCCCCHHHHHHHH
T ss_conf             1276534409999965889999589998677431--------------27898756598599768886673899999999


Q ss_pred             HCCCCCCCCC
Q ss_conf             8796851116
Q gi|254780649|r  206 IEQDNTRTLG  215 (216)
Q Consensus       206 ~~~~~i~~L~  215 (216)
                      ++|+++++|-
T Consensus       227 ~~g~~i~~lv  236 (271)
T d1kr2a_         227 RRGQSIRYLV  236 (271)
T ss_dssp             HTTCCCBTTB
T ss_pred             HCCCCCHHHC
T ss_conf             8599922638


No 2  
>d1nuua_ c.26.1.3 (A:) Cytosolic NMN/NAMN adenylyltransferase {Human (Homo sapiens), FKSG76 [TaxId: 9606]}
Probab=100.00  E-value=1.4e-45  Score=280.95  Aligned_cols=181  Identities=20%  Similarity=0.269  Sum_probs=146.4

Q ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEE----EECCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCHHHHH
Q ss_conf             8998277897133899999999998629988999----9758998755566889999999986310-4753213425531
Q gi|254780649|r   21 KIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWW----IITPFNSVKNYNLSSSLEKRISLSQSLI-KNPRIRITAFEAY   95 (216)
Q Consensus        21 kIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~----ips~~~p~K~~~~~~~~~~R~~m~~~~~-~~~~i~v~~~E~~   95 (216)
                      .|++|||||||||.||+.|++.|++.++++++++    +.++.++.|.+...+++++|++||++|+ +++++.|+++|..
T Consensus         5 ~vl~~~GSFdP~H~GHl~i~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~R~~M~~la~~~~~~~~v~~~e~~   84 (233)
T d1nuua_           5 VVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDLAASHHRVAMARLALQTSDWIRVDPWESE   84 (233)
T ss_dssp             EEEEEEECCTTCCHHHHHHHHHHHHHHHHHSSEEEEEEEEEECCTTCSSSCCCCHHHHHHHHHHHGGGCSSEEECCHHHH
T ss_pred             EEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHH
T ss_conf             79998304284289999999999998671023111037983677875567668999999999999844587787369976


Q ss_pred             HH-HHHHHHHHHHHHCCC---------------------CCCCEEEECCCCCHHHHHHHHHH-----HHHHHHCCEEEEE
Q ss_conf             00-032899999972013---------------------67843896168813577777619-----9999758989993
Q gi|254780649|r   96 LN-HTETFHTILQVKKHN---------------------KSVNFVWIMGADNIKSFHQWHHW-----KRIVTTVPIAIID  148 (216)
Q Consensus        96 ~~-~syT~dtL~~lk~~~---------------------p~~~l~fiiG~D~l~~l~~W~~~-----~~ll~~~~iiV~~  148 (216)
                      .+ ++||++||.++++.|                     |+.+++||||+|++.+|++|++|     ++|++.++++|++
T Consensus        85 ~~~~s~ti~tl~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~fiiG~D~l~~~~~wk~~~~~~~~~il~~~~~iv~~  164 (233)
T d1nuua_          85 QAQWMETVKVLRHHHSKLLRSPPQMEGPDHGKALFSTPAAVPELKLLCGADVLKTFQTPNLWKDAHIQEIVEKFGLVCVG  164 (233)
T ss_dssp             SSSCCCHHHHHHHHHHHHC--------------------CCCEEEEEEEHHHHHHTTSTTTSCHHHHHHHHHHTCEEEEC
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCEEEEECCCHHHHCCHHHHHCCHHHHHHHHHCCEEEEE
T ss_conf             78986289999999998312333222321000000024777528999825406544104440302299998548699980


Q ss_pred             CCCCCHHHHCCHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf             8998714321589999863258812334542058980999807468868899999998796851116
Q gi|254780649|r  149 RFDVTFNYISSPMAKTFEYARLDESLSHILCTTSPPSWLFIHDRHHIISSTAIRKKIIEQDNTRTLG  215 (216)
Q Consensus       149 R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ISST~IR~~l~~~~~i~~L~  215 (216)
                      |+|+........              ...+.......+++.+....+||||+||+++++|+++++|-
T Consensus       165 R~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~ISST~IR~~l~~g~~i~~lv  217 (233)
T d1nuua_         165 RVSHDPKGYIAE--------------SPILRMHQHNIHLAKEPVQNEISATYIRRALGQGQSVKYLI  217 (233)
T ss_dssp             CTTCCHHHHHHH--------------CHHHHHTGGGEEEECCSCCCCCCHHHHHHHHHTTCCCBTTB
T ss_pred             CCCCCHHHHHHH--------------HHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCHHHC
T ss_conf             788763433344--------------78876436977996688656687899999998599921408


No 3  
>d1k4ma_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=2.6e-42  Score=261.76  Aligned_cols=193  Identities=16%  Similarity=0.215  Sum_probs=159.0

Q ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH-CCCCCCCCCHHHHHHHH
Q ss_conf             78998277897133899999999998629988999975899875556688999999998631-04753213425531000
Q gi|254780649|r   20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSL-IKNPRIRITAFEAYLNH   98 (216)
Q Consensus        20 mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~-~~~~~i~v~~~E~~~~~   98 (216)
                      ..+|||||||||||+||+.|++.|++.+++|+|+|+|++.+|+|.... ....+|.+|+..+ ...+.+.+++.|.....
T Consensus         3 ~~~AlfgGSFnP~h~GHl~~~~~a~~~~~~d~v~~~p~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (213)
T d1k4ma_           3 SLQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPPHRPQPE-ANSVQRKHMLELAIADKPLFTLDERELKRNA   81 (213)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHHHHTCSCEEEEECSSCTTSCCCS-SCHHHHHHHHHHHHTTCTTEEECCHHHHCSS
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHCCCC-CCHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf             667997047584849999999999997099989999928882101232-1047889988887640453134301122478


Q ss_pred             --HHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCHHHHHHHHCCCCHHHHH
Q ss_conf             --328999999720136784389616881357777761999997589899938998714321589999863258812334
Q gi|254780649|r   99 --TETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSH  176 (216)
Q Consensus        99 --syT~dtL~~lk~~~p~~~l~fiiG~D~l~~l~~W~~~~~ll~~~~iiV~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~  176 (216)
                        .+++.++...++.+|+..++|++|+|.+..+++|++|++++..++++|++|+|+...................  ...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~w~~~~~~~~~~~~~v~~R~g~~~~~~~~~~~~~~~~~~~~--~~~  159 (213)
T d1k4ma_          82 PSYTAQTLKEWRQEQGPDVPLAFIIGQDSLLTFPTWYEYETILDNAHLIVCRRPGYPLEMAQPQYQQWLEDHLTH--NPE  159 (213)
T ss_dssp             CCCHHHHHHHHHHHHCTTSCEEEEEEHHHHHHGGGSTTHHHHHHHCEEEEECCTTCCSSCSSHHHHHHHHHHBCS--CTT
T ss_pred             CCCCEEECCHHHCCCCCCCEEEECCCEEEECCCCCHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCC--HHH
T ss_conf             742211000011025887524441211210133422334431564069999389962567789999875300110--034


Q ss_pred             HHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf             542058980999807468868899999998796851116
Q gi|254780649|r  177 ILCTTSPPSWLFIHDRHHIISSTAIRKKIIEQDNTRTLG  215 (216)
Q Consensus       177 ~~~~~~~~~~~~i~~~~~~ISST~IR~~l~~~~~i~~L~  215 (216)
                      .+.....+.+.+.+.+..+||||+||++|++|+++++|.
T Consensus       160 ~l~~~~~~~~~~~~~~~~~ISST~IR~~i~~g~~i~~lv  198 (213)
T d1k4ma_         160 DLHLQPAGKIYLAETPWFNISATIIRERLQNGESCEDLL  198 (213)
T ss_dssp             HHHHSSSCCEEEECCCCCCCCHHHHHHHHHTTCCCTTTS
T ss_pred             HHCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCHHHHC
T ss_conf             431377854999368867778999999998499913738


No 4  
>d1jhda2 c.26.1.5 (A:174-396) ATP sulfurylase catalytic domain {Sulfur-oxidizing endosymbiont of Riftia pachyptila [TaxId: 35843]}
Probab=100.00  E-value=1.8e-39  Score=245.36  Aligned_cols=181  Identities=10%  Similarity=0.095  Sum_probs=141.0

Q ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCHHHHHH-HHH
Q ss_conf             9982778971338999999999986299889999758998755566889999999986310-47532134255310-003
Q gi|254780649|r   22 IGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLI-KNPRIRITAFEAYL-NHT   99 (216)
Q Consensus        22 IgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~-~~~~i~v~~~E~~~-~~s   99 (216)
                      || | |||||||+||+.+|+.|++.+++|+|+|+|++.||+|.....++..+|++|+.+++ +.+++.|+++|... +++
T Consensus        23 ~~-f-~TfnP~H~GHl~ia~~a~~~~~ld~v~~iP~~~~p~K~~~~~~~~~~r~~m~~~a~~~~~~~~is~~E~~~~~~s  100 (223)
T d1jhda2          23 VA-F-QTRNPMHRAHEELCRMAMESLDADGVVVHMLLGKLKKGDIPAPVRDAAIRTMAEVYFPPNTVMVTGYGFDMLYAG  100 (223)
T ss_dssp             EE-E-EESSCCCHHHHHHHHHHHHHHTCSEEEEEEEECCCCTTCCCHHHHHHHHHHHHHHHSCTTCEEEEEEECCCCCCT
T ss_pred             EE-E-ECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCC
T ss_conf             88-6-278999899999999999972758569832667777677764449999999998635788436435111025787


Q ss_pred             HHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCHHHHHHHHCCCCHHHHHHHH
Q ss_conf             28999999720136784389616881357777761999997589899938998714321589999863258812334542
Q gi|254780649|r  100 ETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILC  179 (216)
Q Consensus       100 yT~dtL~~lk~~~p~~~l~fiiG~D~l~~l~~W~~~~~ll~~~~iiV~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (216)
                      ||++||.++++++++..+ |+||+|.+..+++|++|++++..++++|..|++..........   +..   .........
T Consensus       101 yt~~tl~~l~~~~~~~~~-~iiG~D~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~  173 (223)
T d1jhda2         101 PREAVLHAYFRQNMGATH-FIIGRDHAGVGDYYGAFDAQTIFDDEVPEGAMEIEIFRADHTA---YSK---KLNKIVMMR  173 (223)
T ss_dssp             HHHHHHHHHHHHHTTCSE-EEECTTTTCCTTCSCTTHHHHHHHHTSCTTSCSCEEEECCCEE---EET---TTTEEEEGG
T ss_pred             CHHHHHHHHHHHCCCCEE-EEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHH---HHH---HHCCCEEHH
T ss_conf             199999999985885607-8886153013357670788889986131235565433421677---765---522300054


Q ss_pred             HCCCCEEEEEECCCCCCCHHHHHHHHHCCCCC-CCCC
Q ss_conf             05898099980746886889999999879685-1116
Q gi|254780649|r  180 TTSPPSWLFIHDRHHIISSTAIRKKIIEQDNT-RTLG  215 (216)
Q Consensus       180 ~~~~~~~~~i~~~~~~ISST~IR~~l~~~~~i-~~L~  215 (216)
                      ...    ...+.+.++||||+||++|++|++| .+|.
T Consensus       174 ~~~----~~~~~~~i~ISST~IR~~l~~G~~ip~~l~  206 (223)
T d1jhda2         174 DVP----DHTKEDFVLLSGTKVREMLGQGIAPPPEFS  206 (223)
T ss_dssp             GCT----TCCGGGEECCCHHHHHHHHHTTCCCCTTTC
T ss_pred             HHH----CCCCCCCCEECHHHHHHHHHCCCCCCCCCC
T ss_conf             301----005788614378999999987379984557


No 5  
>d1kama_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Bacillus subtilis [TaxId: 1423]}
Probab=100.00  E-value=4e-34  Score=214.57  Aligned_cols=169  Identities=25%  Similarity=0.462  Sum_probs=147.4

Q ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCHHHHHH-H
Q ss_conf             789982778971338999999999986299889999758998755566889999999986310-47532134255310-0
Q gi|254780649|r   20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLI-KNPRIRITAFEAYL-N   97 (216)
Q Consensus        20 mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~-~~~~i~v~~~E~~~-~   97 (216)
                      -|||||||||||||.||+.+++.|.+.+++++|+++|++.++.+.........+|..|+.++. +...+.+.+.|... +
T Consensus         2 kkIalfgGSFdP~H~GH~~ii~~a~~~~~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~   81 (189)
T d1kama_           2 KKIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPPHKQNEDYTDSFHRVEMLKLAIQSNPSFKLELVEMEREG   81 (189)
T ss_dssp             CEEEEEEECCSSCCHHHHHHHHHHHHHTTCSEEEEEECCCC---------CHHHHHHHHHHHHTTCTTEEECCGGGSTTC
T ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHCCCC
T ss_conf             77999663769898899999999999829998999963577632110146789888887765036762122012230678


Q ss_pred             HHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCHHHHHHHHCCCCHHHHHH
Q ss_conf             03289999997201367843896168813577777619999975898999389987143215899998632588123345
Q gi|254780649|r   98 HTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHI  177 (216)
Q Consensus        98 ~syT~dtL~~lk~~~p~~~l~fiiG~D~l~~l~~W~~~~~ll~~~~iiV~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (216)
                      ++||++++.++++.+|...++|++|+|...++..|+.++.++..++.++..|++....                      
T Consensus        82 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------  139 (189)
T d1kama_          82 PSYTFDTVSLLKQRYPNDQLFFIIGADMIEYLPKWYKLDELLNLIQFIGVKRPGFHVE----------------------  139 (189)
T ss_dssp             CCSHHHHHHHHHHHSTTSEEEEEEETTTTTTCCCCHHHHHHHHHSEEEEEECSSCCCC----------------------
T ss_pred             CCEEHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHCCEEECCCCCCCCC----------------------
T ss_conf             6020555667763277630222110000112121000354431123111046321111----------------------


Q ss_pred             HHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf             4205898099980746886889999999879685111
Q gi|254780649|r  178 LCTTSPPSWLFIHDRHHIISSTAIRKKIIEQDNTRTL  214 (216)
Q Consensus       178 ~~~~~~~~~~~i~~~~~~ISST~IR~~l~~~~~i~~L  214 (216)
                          ....+.+++....+||||+||+++++|+++++|
T Consensus       140 ----~~~~~~~~~~~~~~ISST~IR~~i~~~~~~~~l  172 (189)
T d1kama_         140 ----TPYPLLFADVPEFEVSSTMIRERFKSKKPTDYL  172 (189)
T ss_dssp             ----CSSCCEEEECCCBCCCHHHHHHHHHHTCCCTTT
T ss_pred             ----CCHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHH
T ss_conf             ----001321023655768759999999839990373


No 6  
>d1ej2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=99.92  E-value=1.5e-24  Score=159.29  Aligned_cols=144  Identities=16%  Similarity=0.253  Sum_probs=89.4

Q ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf             78998277897133899999999998629988999975899875556688999999998631047532134255310003
Q gi|254780649|r   20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKNPRIRITAFEAYLNHT   99 (216)
Q Consensus        20 mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~~~~i~v~~~E~~~~~s   99 (216)
                      || |||||||||+|+||+.+++.|.+.+  |+++++++..++.+++....++++|++|++.++.+..+            
T Consensus         1 mk-gi~~G~FdP~H~GH~~ii~~a~~~~--d~v~v~i~~~~~~~~~~~~~~~~~R~~mi~~~~~~~~~------------   65 (167)
T d1ej2a_           1 MR-GLLVGRMQPFHRGHLQVIKSILEEV--DELIICIGSAQLSHSIRDPFTAGERVMMLTKALSENGI------------   65 (167)
T ss_dssp             CE-EEEEECCTTCCHHHHHHHHHHTTTC--SEEEEEECSTTCCSSSSSCSCHHHHHHHHHHHHHHTTC------------
T ss_pred             CE-EEEEECCCCCCHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC------------
T ss_conf             97-9996445999989999999999977--96399970587777755446689999999997887088------------


Q ss_pred             HHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCHHHHHHHHCCCCHHHHHHHH
Q ss_conf             28999999720136784389616881357777761999997589899938998714321589999863258812334542
Q gi|254780649|r  100 ETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILC  179 (216)
Q Consensus       100 yT~dtL~~lk~~~p~~~l~fiiG~D~l~~l~~W~~~~~ll~~~~iiV~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (216)
                                    ....++.++.|.+.....|..+.+.+......|+.+..+.        ...+....          
T Consensus        66 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~----------  113 (167)
T d1ej2a_          66 --------------PASRYYIIPVQDIECNALWVGHIKMLTPPFDRVYSGNPLV--------QRLFSEDG----------  113 (167)
T ss_dssp             --------------CGGGEEEEECCCCSCHHHHHHHHHHHSCCCSEEECCCHHH--------HHHHHHTT----------
T ss_pred             --------------CCEEEEECCCHHHHHHHHHHHHHHEEEECEEEEECCHHHH--------HHHHHCCC----------
T ss_conf             --------------7035775142033357879988762031204898536999--------88777179----------


Q ss_pred             HCCCCEEEEEE-CCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf             05898099980-746886889999999879685111
Q gi|254780649|r  180 TTSPPSWLFIH-DRHHIISSTAIRKKIIEQDNTRTL  214 (216)
Q Consensus       180 ~~~~~~~~~i~-~~~~~ISST~IR~~l~~~~~i~~L  214 (216)
                         . ....+. ....+||||+||+++++|+++++|
T Consensus       114 ---~-~v~~~~~~~~~~ISST~IR~~i~~g~~~~~l  145 (167)
T d1ej2a_         114 ---Y-EVTAPPLFYRDRYSGTEVRRRMLDDGDWRSL  145 (167)
T ss_dssp             ---C-CEECCCCSSTTTSSHHHHHHHHHHTCCCGGG
T ss_pred             ---C-EEEECCCCCCCCCCHHHHHHHHHCCCCHHHH
T ss_conf             ---7-6996462124655689999999859985696


No 7  
>d1tfua_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=99.91  E-value=1.7e-24  Score=159.04  Aligned_cols=144  Identities=14%  Similarity=0.097  Sum_probs=87.4

Q ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf             78998277897133899999999998629988999975899875556688999999998631047532134255310003
Q gi|254780649|r   20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKNPRIRITAFEAYLNHT   99 (216)
Q Consensus        20 mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~~~~i~v~~~E~~~~~s   99 (216)
                      ||+|||||||||+|+||+.+|+.+++.++.+.|+..+++.++++  .  .....+..+...+...........+     .
T Consensus         1 m~~Av~~GsFdPiH~GHl~i~~~a~~~~d~~~v~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~-----~   71 (157)
T d1tfua_           1 MTGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVNPAKTGM--F--DLDERIAMVKESTTHLPNLRVQVGH-----G   71 (157)
T ss_dssp             CCEEEEEECCTTCCHHHHHHHHHHHHHSSEEEEEEECCSSSCCS--S--CHHHHHHHHHHHCTTCTTEEEEEEC-----S
T ss_pred             CCEEEECCCCCCCCHHHHHHHHHHHHHCCHHHHHCCCCCCCCCC--C--CHHHHHHHHHHHHHCCCCCCCCCCC-----C
T ss_conf             98768484789887899999999998458677412556766664--3--3777766788875301222333333-----3


Q ss_pred             HHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCHHHHHHHHCCCCHHHHHHHH
Q ss_conf             28999999720136784389616881357777761999997589899938998714321589999863258812334542
Q gi|254780649|r  100 ETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILC  179 (216)
Q Consensus       100 yT~dtL~~lk~~~p~~~l~fiiG~D~l~~l~~W~~~~~ll~~~~iiV~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (216)
                      .+....  ...........+..|.|...+.+.|...+++.+...+.+..|++                            
T Consensus        72 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------------------------  121 (157)
T d1tfua_          72 LVVDFV--RSCGMTAIVKGLRTGTDFEYELQMAQMNKHIAGVDTFFVATAPR----------------------------  121 (157)
T ss_dssp             CHHHHH--HHTTCCEEEEEECTTCCHHHHHHHHHHHHHHHCCEEEEEECCGG----------------------------
T ss_pred             CCCCCC--CCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCC----------------------------
T ss_conf             332111--24687547666530332102456799999726634387206667----------------------------


Q ss_pred             HCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf             058980999807468868899999998796851116
Q gi|254780649|r  180 TTSPPSWLFIHDRHHIISSTAIRKKIIEQDNTRTLG  215 (216)
Q Consensus       180 ~~~~~~~~~i~~~~~~ISST~IR~~l~~~~~i~~L~  215 (216)
                                   ..+||||+||+++++|+++++|-
T Consensus       122 -------------~~~ISST~IR~~i~~~~~i~~lv  144 (157)
T d1tfua_         122 -------------YSFVSSSLAKEVAMLGGDVSELL  144 (157)
T ss_dssp             -------------GTTCCHHHHHHHHHTTCCCGGGS
T ss_pred             -------------CCCCCHHHHHHHHHCCCCHHHHC
T ss_conf             -------------75225799999998499967846


No 8  
>d1qjca_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Escherichia coli [TaxId: 562]}
Probab=99.91  E-value=2.3e-24  Score=158.21  Aligned_cols=141  Identities=19%  Similarity=0.280  Sum_probs=92.4

Q ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCHHHHHHHHH
Q ss_conf             89982778971338999999999986299889999758998755566889999999986310-47532134255310003
Q gi|254780649|r   21 KIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLI-KNPRIRITAFEAYLNHT   99 (216)
Q Consensus        21 kIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~-~~~~i~v~~~E~~~~~s   99 (216)
                      |+|||||||||||+||+.+++.|.+.+  |+|+++|++.+++|+.   .+..+|..|+..+. ...++.+...+....  
T Consensus         1 k~AifgGsFdP~H~GHl~li~~a~~~~--D~v~v~~~~~~~~k~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   73 (157)
T d1qjca_           1 KRAIYPGTFDPITNGHIDIVTRATQMF--DHVILAIAASPSKKPM---FTLEERVALAQQATAHLGNVEVVGFSDLMA--   73 (157)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHTTS--SEEEEEEESCCSSCCS---SCHHHHHHHHHHHTTTCTTEEEEEECSCHH--
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHC--CEEEECCCCCCCCCCC---CCHHHHHHHHHHHHHHHHCCCCCCCCCCCC--
T ss_conf             979980246878899999999999857--9720025676545665---678889999999888764244321021121--


Q ss_pred             HHHHHHHHHHCCCCCCCEEEE-CCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCHHHHHHHHCCCCHHHHHHH
Q ss_conf             289999997201367843896-1688135777776199999758989993899871432158999986325881233454
Q gi|254780649|r  100 ETFHTILQVKKHNKSVNFVWI-MGADNIKSFHQWHHWKRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHIL  178 (216)
Q Consensus       100 yT~dtL~~lk~~~p~~~l~fi-iG~D~l~~l~~W~~~~~ll~~~~iiV~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (216)
                            ....+.......... .+.+.+.....|+.++.+...+..+++.+                             
T Consensus        74 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~-----------------------------  118 (157)
T d1qjca_          74 ------NFARNQHATVLIRGLRAVADFEYEMQLAHMNRHLMPELESVFLMP-----------------------------  118 (157)
T ss_dssp             ------HHHHHTTCCEEEEECCTTCCHHHHHHHHHHHHHHCTTSEEEEECC-----------------------------
T ss_pred             ------CHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEC-----------------------------
T ss_conf             ------113440642234320265300225578899997278855998516-----------------------------


Q ss_pred             HHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf             205898099980746886889999999879685111
Q gi|254780649|r  179 CTTSPPSWLFIHDRHHIISSTAIRKKIIEQDNTRTL  214 (216)
Q Consensus       179 ~~~~~~~~~~i~~~~~~ISST~IR~~l~~~~~i~~L  214 (216)
                                 .....+||||+||+++++|+|+++|
T Consensus       119 -----------~~~~~~ISST~IR~~i~~g~di~~l  143 (157)
T d1qjca_         119 -----------SKEWSFISSSLVKEVARHQGDVTHF  143 (157)
T ss_dssp             -----------CGGGTTCCHHHHHHHHHTTCCCGGG
T ss_pred             -----------CCCCCCCCHHHHHHHHHCCCCHHHH
T ss_conf             -----------7777763789999999949996784


No 9  
>d1o6ba_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Bacillus subtilis [TaxId: 1423]}
Probab=99.90  E-value=1.8e-23  Score=153.08  Aligned_cols=142  Identities=16%  Similarity=0.233  Sum_probs=88.0

Q ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCCCCCHHHHHHHHH
Q ss_conf             899827789713389999999999862998899997589987555668899999999863104-7532134255310003
Q gi|254780649|r   21 KIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIK-NPRIRITAFEAYLNHT   99 (216)
Q Consensus        21 kIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~-~~~i~v~~~E~~~~~s   99 (216)
                      +||||||||||||+||+.+++.+.+.+  |+|+++|+..++.+   ...++++|.+|+..+.. .+......++..    
T Consensus         2 ~IaifgGsFdPiH~GHl~i~~~a~~~~--D~v~v~~~~~~~~~---~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~----   72 (163)
T d1o6ba_           2 SIAVCPGSFDPVTYGHLDIIKRGAHIF--EQVYVCVLNNSSKK---PLFSVEERCELLREVTKDIPNITVETSQGL----   72 (163)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHHHS--SEEEEEECCCCSSC---CSSCHHHHHHHHHHHHTTCTTEEEEECSSC----
T ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHC--CEEEECCCCCCCCC---CCCCHHHHHHHHHHHCCCCCCCEECCCCCC----
T ss_conf             099966066988889999999999868--97787035322222---358999999987641035675300134454----


Q ss_pred             HHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCHHHHHHHHCCCCHHHHHHHH
Q ss_conf             28999999720136784389616881357777761999997589899938998714321589999863258812334542
Q gi|254780649|r  100 ETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILC  179 (216)
Q Consensus       100 yT~dtL~~lk~~~p~~~l~fiiG~D~l~~l~~W~~~~~ll~~~~iiV~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (216)
                          +....+.........++.+.+......++..+..-+.         +.                            
T Consensus        73 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~----------------------------  111 (163)
T d1o6ba_          73 ----LIDYARRKNAKAILRGLRAVSDFEYEMQGTSVNRVLD---------ES----------------------------  111 (163)
T ss_dssp             ----HHHHHHHTTCSEEEEEECSGGGHHHHHHHHHHHHHHC---------TT----------------------------
T ss_pred             ----CCCCCEECCCCEEEEEECCCCHHHHHHHHHHHHHHHC---------CC----------------------------
T ss_conf             ----3322200275034542037412466778999999858---------56----------------------------


Q ss_pred             HCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf             05898099980746886889999999879685111
Q gi|254780649|r  180 TTSPPSWLFIHDRHHIISSTAIRKKIIEQDNTRTL  214 (216)
Q Consensus       180 ~~~~~~~~~i~~~~~~ISST~IR~~l~~~~~i~~L  214 (216)
                        ....+.+.+....+||||+||+++++|+|+++|
T Consensus       112 --~~~~~~~~~~~~~~ISST~IR~~i~~g~~i~~l  144 (163)
T d1o6ba_         112 --IETFFMMANNQYSFLSSSIVKEVARYDGSVSEF  144 (163)
T ss_dssp             --SEEEEEECCSTTTTCCHHHHHHHHHTTCCCTTT
T ss_pred             --CCEEECCCCCHHHCCCHHHHHHHHHCCCCHHHH
T ss_conf             --536752342000001779999999929996785


No 10 
>d1od6a_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermus thermophilus [TaxId: 274]}
Probab=99.90  E-value=7.8e-24  Score=155.20  Aligned_cols=143  Identities=15%  Similarity=0.235  Sum_probs=85.9

Q ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCHHHHHHHH
Q ss_conf             789982778971338999999999986299889999758998755566889999999986310-4753213425531000
Q gi|254780649|r   20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLI-KNPRIRITAFEAYLNH   98 (216)
Q Consensus        20 mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~-~~~~i~v~~~E~~~~~   98 (216)
                      ||+ ||||||||||+||+.+++.|.+.+  |+|+++|+..++.| .....+...|..++..+. ......+...+.....
T Consensus         1 Mk~-ifgGsFdP~H~GHl~ii~~a~~~~--D~v~i~~~~~~~kk-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (160)
T d1od6a_           1 MHV-VYPGSFDPLTNGHLDVIQRASRLF--EKVTVAVLENPSKR-GQYLFSAEERLAIIREATAHLANVEAATFSGLLVD   76 (160)
T ss_dssp             CEE-EEEECCTTCCHHHHHHHHHHHHHS--SEEEEEEECC------CCSSCHHHHHHHHHHHTTTCTTEEEEEECSCHHH
T ss_pred             CEE-EEEECCCCCCHHHHHHHHHHHHHC--CEEEEECCCCCCCC-CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
T ss_conf             969-942326876799999999999848--88788436777766-66557799999987753200122223552113312


Q ss_pred             HHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHH-HHHHHHHHHHCCEEEEECCCCCHHHHCCHHHHHHHHCCCCHHHHHH
Q ss_conf             328999999720136784389616881357777-7619999975898999389987143215899998632588123345
Q gi|254780649|r   99 TETFHTILQVKKHNKSVNFVWIMGADNIKSFHQ-WHHWKRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHI  177 (216)
Q Consensus        99 syT~dtL~~lk~~~p~~~l~fiiG~D~l~~l~~-W~~~~~ll~~~~iiV~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (216)
                           +   ..............+.|.+..... |+.+..+-.....+                                
T Consensus        77 -----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i--------------------------------  116 (160)
T d1od6a_          77 -----F---VRRVGAQAIVKGLRAVSDYEYELQMAHLNRQLYPGLETL--------------------------------  116 (160)
T ss_dssp             -----H---HHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTTCEEE--------------------------------
T ss_pred             -----H---HHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHCCCCEE--------------------------------
T ss_conf             -----4---532422420211037426666657999999862477675--------------------------------


Q ss_pred             HHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf             4205898099980746886889999999879685111
Q gi|254780649|r  178 LCTTSPPSWLFIHDRHHIISSTAIRKKIIEQDNTRTL  214 (216)
Q Consensus       178 ~~~~~~~~~~~i~~~~~~ISST~IR~~l~~~~~i~~L  214 (216)
                              +.+.+....+||||+||+++++|+|+++|
T Consensus       117 --------~l~~~~~~~~ISST~IR~~i~~g~~i~~l  145 (160)
T d1od6a_         117 --------FILAATRYSFVSSTMVKEIARYGGDVSKL  145 (160)
T ss_dssp             --------EEECCGGGTTCCHHHHHHHHHTTCCCTTT
T ss_pred             --------ECCCCCCCCCCCHHHHHHHHHCCCCHHHH
T ss_conf             --------33478554565639999999949986783


No 11 
>d1vlha_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermotoga maritima [TaxId: 2336]}
Probab=99.89  E-value=4.3e-25  Score=162.47  Aligned_cols=56  Identities=30%  Similarity=0.494  Sum_probs=44.7

Q ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             78998277897133899999999998629988999975899875556688999999998631
Q gi|254780649|r   20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSL   81 (216)
Q Consensus        20 mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~   81 (216)
                      || |||||||||||+||+.+|+.|++.+  |+|+++|+..++++...   ....+..+.+..
T Consensus         1 Mk-aifgGsFdPiH~GHl~i~~~a~~~~--D~v~v~~~~~~~~~~~~---~~~~~~~~~~~~   56 (157)
T d1vlha_           1 MK-AVYPGSFDPITLGHVDIIKRALSIF--DELVVLVTENPRKKCMF---TLEERKKLIEEV   56 (157)
T ss_dssp             CE-EEEEECCTTCCHHHHHHHHHHHTTC--SEEEEEEECCTTCCCSS---CHHHHHHHHHHH
T ss_pred             CE-EEEEECCCCCCHHHHHHHHHHHHHC--CCCCCCCCCCCCCCCCC---CHHHHHHHHHHH
T ss_conf             92-8972337988689999999999853--81000335665334457---889999999987


No 12 
>d1f9aa_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.89  E-value=4.1e-23  Score=151.04  Aligned_cols=141  Identities=14%  Similarity=0.169  Sum_probs=91.3

Q ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCC-CCCCHHHHHHHH
Q ss_conf             7899827789713389999999999862998899997589987555668899999999863104753-213425531000
Q gi|254780649|r   20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKNPR-IRITAFEAYLNH   98 (216)
Q Consensus        20 mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~~~~-i~v~~~E~~~~~   98 (216)
                      || |||||||||+|+||+.+++.|.+.+  |+++++++..++.+.+....++++|.+|++.++.+.. ..+...+.  ..
T Consensus         1 mk-gl~~G~FdP~H~GH~~li~~a~~~~--d~v~v~i~~~~~~~~~~~~~s~~~R~~~i~~~~~~~~~~~~~~~~~--~~   75 (164)
T d1f9aa_           1 LR-GFIIGRFQPFHKGHLEVIKKIAEEV--DEIIIGIGSAQKSHTLENPFTAGERILMITQSLKDYDLTYYPIPIK--DI   75 (164)
T ss_dssp             CE-EEEEECCTTCCHHHHHHHHHHTTTC--SEEEEEECSTTCCSSSSCCSCHHHHHHHHHHHHTTSSCEEEEEECC--CC
T ss_pred             CE-EEEECCCCCCCHHHHHHHHHHHHHC--CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCC--CC
T ss_conf             97-9996156999889999999999968--9749995477644576777889999999999753347624521335--43


Q ss_pred             HHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCHHHHHHHHCCCCHHHHHHH
Q ss_conf             32899999972013678438961688135777776199999758989993899871432158999986325881233454
Q gi|254780649|r   99 TETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHIL  178 (216)
Q Consensus        99 syT~dtL~~lk~~~p~~~l~fiiG~D~l~~l~~W~~~~~ll~~~~iiV~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (216)
                      .++..+..++++..++..++|  +.|        ....++.+..++-|..-+.                           
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~--~~~--------~~~~~~~~~~~~~v~~~~~---------------------------  118 (164)
T d1f9aa_          76 EFNSIWVSYVESLTPPFDIVY--SGN--------PLVRVLFEERGYEVKRPEM---------------------------  118 (164)
T ss_dssp             SCGGGHHHHHHHHSCCCSEEE--CCC--------HHHHHHHHHTTCEEECCCC---------------------------
T ss_pred             CHHHHHHHHHHHHCCCEEEEE--CCH--------HHHHHHHHHCCCEEEEECC---------------------------
T ss_conf             207779999975258669998--284--------9999998826982898147---------------------------


Q ss_pred             HHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf             205898099980746886889999999879685111
Q gi|254780649|r  179 CTTSPPSWLFIHDRHHIISSTAIRKKIIEQDNTRTL  214 (216)
Q Consensus       179 ~~~~~~~~~~i~~~~~~ISST~IR~~l~~~~~i~~L  214 (216)
                                  ....+||||.||+++++|+++++|
T Consensus       119 ------------~~~~~ISST~IR~~i~~g~~i~~~  142 (164)
T d1f9aa_         119 ------------FNRKEYSGTEIRRRMLNGEKWEHL  142 (164)
T ss_dssp             ------------CSTTTSSHHHHHHHHHHTCCCGGG
T ss_pred             ------------CCCCCCCHHHHHHHHHCCCCHHHH
T ss_conf             ------------677776789999999959985785


No 13 
>d1lw7a1 c.26.1.3 (A:57-219) Transcriptional regulator NadR, NMN-adenylyltransferase domain {Haemophilus influenzae [TaxId: 727]}
Probab=99.71  E-value=5.9e-18  Score=121.28  Aligned_cols=63  Identities=27%  Similarity=0.434  Sum_probs=51.9

Q ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC-------CCCCCCCHHHHHHHHHHHCCC
Q ss_conf             78998277897133899999999998629988999975899875-------556688999999998631047
Q gi|254780649|r   20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVK-------NYNLSSSLEKRISLSQSLIKN   84 (216)
Q Consensus        20 mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K-------~~~~~~~~~~R~~m~~~~~~~   84 (216)
                      -|||||||||||+|.||+.+++.|.+.+  |+++++++..++.+       ......++++|++|++.+...
T Consensus         2 kkigl~~G~FdP~H~GH~~l~~~a~~~~--d~v~v~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~   71 (163)
T d1lw7a1           2 KKVGVIFGKFYPVHTGHINMIYEAFSKV--DELHVIVCSDTVRDLKLFYDSKMKRMPTVQDRLRWMQQIFKY   71 (163)
T ss_dssp             CCEEEEEECCSSCCHHHHHHHHHHHTTC--SEEEEEEEECHHHHHHHHHHTTCSSCCCHHHHHHHHHHHTST
T ss_pred             CEEEEEEEECCCCCHHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             7699995247989999999999999968--944999978998644456555656789999999999983766


No 14 
>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltransferase {Bacillus subtilis [TaxId: 1423]}
Probab=99.33  E-value=1.1e-12  Score=90.89  Aligned_cols=93  Identities=25%  Similarity=0.241  Sum_probs=60.0

Q ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCC--CCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf             789982778971338999999999986299889999758998--755566889999999986310475321342553100
Q gi|254780649|r   20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNS--VKNYNLSSSLEKRISLSQSLIKNPRIRITAFEAYLN   97 (216)
Q Consensus        20 mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p--~K~~~~~~~~~~R~~m~~~~~~~~~i~v~~~E~~~~   97 (216)
                      ||+.+-+|+|||+|.||+++.+.|.+..  |++++..+....  .+++....+.++|.+|++++-.-..+.+..     +
T Consensus         1 Mk~V~~~G~FD~lH~GH~~~l~~Ak~~g--d~liV~v~sD~~~~~~k~~pi~~~~eR~~~l~~~~~Vd~v~~~~-----~   73 (126)
T d1coza_           1 MKKVITYGTFDLLHWGHIKLLERAKQLG--DYLVVAISTDEFNLQKQKKAYHSYEHRKLILETIRYVDEVIPEK-----N   73 (126)
T ss_dssp             CCEEEEEECCCSCCHHHHHHHHHHHTTS--SEEEEEEECHHHHHHHTCCCSSCHHHHHHHHTTBTTCCEEEEEC-----C
T ss_pred             CCEEEEEEEECCCCHHHHHHHHHHHHHC--CEEEEEEECCCHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEECC-----C
T ss_conf             9499991175889989999999998609--55255540330112014756577899998754322566146515-----5


Q ss_pred             HHHHHHHHHHHHCCCCCCCEEEECCCCC
Q ss_conf             0328999999720136784389616881
Q gi|254780649|r   98 HTETFHTILQVKKHNKSVNFVWIMGADN  125 (216)
Q Consensus        98 ~syT~dtL~~lk~~~p~~~l~fiiG~D~  125 (216)
                      ..++.+   .+++..|+   ++++|.|.
T Consensus        74 ~~~~~~---~i~~~~~d---~~v~G~D~   95 (126)
T d1coza_          74 WEQKKQ---DIIDHNID---VFVMGDDW   95 (126)
T ss_dssp             STTHHH---HHHHTTCS---EEEEEGGG
T ss_pred             CCCCHH---HHHCCCCC---EEEECCCC
T ss_conf             311076---65144898---76666535


No 15 
>d1mrza2 c.26.1.3 (A:2-158) FMN adenylyltransferase domain of bifunctional FAD synthetase {Thermotoga maritima [TaxId: 2336]}
Probab=98.48  E-value=1e-06  Score=56.44  Aligned_cols=96  Identities=17%  Similarity=0.196  Sum_probs=51.2

Q ss_pred             EEEECCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCCCCC----CCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf             9982778971338999999999986---2998899997589987----55566889999999986310475321342553
Q gi|254780649|r   22 IGLFGGNFNPPHHGHIEIAQIAIKK---LNLDQLWWIITPFNSV----KNYNLSSSLEKRISLSQSLIKNPRIRITAFEA   94 (216)
Q Consensus        22 IgifGGSFdPiH~gHl~ia~~~~~~---l~ld~v~~ips~~~p~----K~~~~~~~~~~R~~m~~~~~~~~~i~v~~~E~   94 (216)
                      |+|  |+||-+|.||..+.+.+.+.   .++.-+.+...+ ||.    +......+.++|.++++....  .+ +-+++.
T Consensus         2 vti--G~FDGvH~GHq~li~~~~~~a~~~~~~~~v~tf~~-~p~~~~~~~~~~l~~~~~k~~~l~~~g~--~~-~l~f~~   75 (157)
T d1mrza2           2 VSI--GVFDGVHIGHQKVLRTMKEIAFFRKDDSLIYTISY-PPEYFLPDFPGLLMTVESRVEMLSRYAR--TV-VLDFFR   75 (157)
T ss_dssp             EEE--ECCTTCCHHHHHHHHHHHHHHHHHTCCCEEEEESS-CGGGGSTTCCCBSSCHHHHHHHHTTTSC--EE-EECHHH
T ss_pred             EEE--ECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCC-CCHHEEECCCCCCCCHHHHHHHHHCCCC--EE-EEHHHH
T ss_conf             899--72610458999999999999997299856764278-8231474166544447776555430343--02-212566


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHH
Q ss_conf             1000328999999720136784389616881357
Q gi|254780649|r   95 YLNHTETFHTILQVKKHNKSVNFVWIMGADNIKS  128 (216)
Q Consensus        95 ~~~~syT~dtL~~lk~~~p~~~l~fiiG~D~l~~  128 (216)
                      -..-+ .-+=+..+   -.+.+ .+++|.|--..
T Consensus        76 ~~~ls-~~~Fi~~~---l~~~~-~ivvG~Df~FG  104 (157)
T d1mrza2          76 IKDLT-PEGFVERY---LSGVS-AVVVGRDFRFG  104 (157)
T ss_dssp             HTTCC-HHHHHHHH---CTTCC-EEEEETTCCBS
T ss_pred             HHHHH-HHHHHHHH---HHCCC-EEEEECCCCCC
T ss_conf             76540-66789988---63273-89995574004


No 16 
>d1g8fa2 c.26.1.5 (A:169-389) ATP sulfurylase catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.17  E-value=1.9e-05  Score=49.07  Aligned_cols=158  Identities=17%  Similarity=0.163  Sum_probs=84.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCC---CCCCCCHHHHHH---HHHH
Q ss_conf             7897133899999999998629988999975899875556688999999998631047---532134255310---0032
Q gi|254780649|r   27 GNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKN---PRIRITAFEAYL---NHTE  100 (216)
Q Consensus        27 GSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~~---~~i~v~~~E~~~---~~sy  100 (216)
                      =|=||+|.||..+...+.+..+ +.|++.|. ..+.|.  +-.+.+-|+.-.+.++++   ..+.+..+....   |+..
T Consensus        27 qTrnp~Hr~He~i~~~a~~~~~-~~lli~p~-vg~~k~--gd~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~m~yaGPrE  102 (221)
T d1g8fa2          27 QTRNPMHRAHRELTVRAAREAN-AKVLIHPV-VGLTKP--GDIDHHTRVRVYQEIIKRYPNGIAFLSLLPLAMRMSGDRE  102 (221)
T ss_dssp             EESSCCCHHHHHHHHHHHHHHT-CEEEEEEB-CSBCST--TCCCHHHHHHHHHHHGGGSCTTSEEECCBCCBCCCCHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHCC-CCEEEEEC-CCCCCC--CCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHH
T ss_conf             6389997789999999998548-98899402-157764--5579799999999999746898589972363002455388


Q ss_pred             HHHHHHHH-HCCCCCCCEEEECCCCCHH--------HHHHHHHHHHHHHH----CCEEEEECCCCCHHHHCCHHHHHHHH
Q ss_conf             89999997-2013678438961688135--------77777619999975----89899938998714321589999863
Q gi|254780649|r  101 TFHTILQV-KKHNKSVNFVWIMGADNIK--------SFHQWHHWKRIVTT----VPIAIIDRFDVTFNYISSPMAKTFEY  167 (216)
Q Consensus       101 T~dtL~~l-k~~~p~~~l~fiiG~D~l~--------~l~~W~~~~~ll~~----~~iiV~~R~g~~~~~~~~~~~~~~~~  167 (216)
                      .+  +.++ ++.+. ++ .||+|-|-.-        ++-.=++.++++..    ..|-++.-.+.-.-..       .+.
T Consensus       103 A~--lhAiirkN~G-ct-hfiVGRDHAG~g~~~~~~~~Y~~~~a~~~~~~~~~~l~I~ii~~~~~~Yc~~-------c~~  171 (221)
T d1g8fa2         103 AV--WHAIIRKNYG-AS-HFIVGRDHAGPGKNSKGVDFYGPYDAQELVESYKHELDIEVVPFRMVTYLPD-------EDR  171 (221)
T ss_dssp             HH--HHHHHHHHTT-CS-EEECCTTTTCCCBCTTSCBSSCTTHHHHHHHHTHHHHCSEEECCCCEEEEGG-------GTE
T ss_pred             HH--HHHHHHHHCC-CC-EEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCEEEECC-------CCE
T ss_conf             99--9999998638-88-0686464568788986422357145678887516445602312451466213-------771


Q ss_pred             CCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCC
Q ss_conf             25881233454205898099980746886889999999879685
Q gi|254780649|r  168 ARLDESLSHILCTTSPPSWLFIHDRHHIISSTAIRKKIIEQDNT  211 (216)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~ISST~IR~~l~~~~~i  211 (216)
                      ..        .....++.    ......||+|+||++|++|+.|
T Consensus       172 ~v--------~~~~c~h~----~~~~i~ISGT~iR~~L~~G~~i  203 (221)
T d1g8fa2         172 YA--------PIDQIDTT----KTRTLNISGTELRRRLRVGGEI  203 (221)
T ss_dssp             EE--------EGGGCSSS----CCCCBCCCHHHHHHHHHHTCCC
T ss_pred             EE--------ECCCCCCC----CCCEEEECHHHHHHHHHCCCCC
T ss_conf             87--------76656898----6754874689999999879998


No 17 
>d1x6va2 c.26.1.5 (A:390-624) ATP sulfurylase catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.00  E-value=8e-05  Score=45.54  Aligned_cols=158  Identities=18%  Similarity=0.157  Sum_probs=82.8

Q ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHCC-----CCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHC-----CCCCCCCC
Q ss_conf             8998277897133899999999998629-----9889999758998755566889999999986310-----47532134
Q gi|254780649|r   21 KIGLFGGNFNPPHHGHIEIAQIAIKKLN-----LDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLI-----KNPRIRIT   90 (216)
Q Consensus        21 kIgifGGSFdPiH~gHl~ia~~~~~~l~-----ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~-----~~~~i~v~   90 (216)
                      +|.=|= |=||+|.||..+.+.+.+.+.     .+-+++.|. ..+.|  .+-.+.+-|+.-.+.++     ....+.++
T Consensus        25 ~VvaFq-TRNp~HraHe~i~~~a~~~~~~~~~~~~~lli~Pv-vG~~k--~gD~~~~~~~~~y~~l~~~~~~~~~~~~l~  100 (235)
T d1x6va2          25 AVSAFQ-LRNPVHNGHALLMQDTHKQLLERGYRRPVLLLHPL-GGWTK--DDDVPLMWRMKQHAAVLEEGVLNPETTVVA  100 (235)
T ss_dssp             EEEEEE-ESSCCCHHHHHHHHHHHHHHHHTTCSSEEEEEEEB-CSCCC--TTSCCHHHHHHHHHHHHHTTSSCGGGEEEC
T ss_pred             EEEEEE-CCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-CCCCC--CCCCCHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf             677863-28998678999999999998743355772898301-15677--776481889999999998426897757997


Q ss_pred             HHHHHH---HHHHHHHHHHHH-HCCCCCCCEEEECCCCCHH------------HHHHHHHHHHHHHHCCEEEEECCCCCH
Q ss_conf             255310---003289999997-2013678438961688135------------777776199999758989993899871
Q gi|254780649|r   91 AFEAYL---NHTETFHTILQV-KKHNKSVNFVWIMGADNIK------------SFHQWHHWKRIVTTVPIAIIDRFDVTF  154 (216)
Q Consensus        91 ~~E~~~---~~syT~dtL~~l-k~~~p~~~l~fiiG~D~l~------------~l~~W~~~~~ll~~~~iiV~~R~g~~~  154 (216)
                      .+....   |+.-.  .+.++ ++.| +++ .||+|-|-.-            .++.+.-..+..+...|-++.-++.-.
T Consensus       101 ~l~~~mryAGPrEA--llhAiiRkN~-GcT-hfiVGRDHAG~g~~~~~~~~y~~~~a~~~~~~~~~~l~I~ii~~~~~~Y  176 (235)
T d1x6va2         101 IFPSPMMYAGPTEV--QWHCRARMVA-GAN-FYIVGRDPAGMPHPETGKDLYEPSHGAKVLTMAPGLITLEIVPFRVAAY  176 (235)
T ss_dssp             CBCCCCCCCHHHHH--HHHHHHHHHT-TCS-EEEECSSTTCCBCTTTCSBSSCTTHHHHHHHHCSSCTTSEEEECCCEEE
T ss_pred             ECCCCCCCCCCHHH--HHHHHHHHHC-CCC-EEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCEEE
T ss_conf             33665444660899--9999999864-887-5887676667788766654568427899987363335324654121133


Q ss_pred             HHHCCHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEE----CCCCCCCHHHHHHHHHCCCCC
Q ss_conf             432158999986325881233454205898099980----746886889999999879685
Q gi|254780649|r  155 NYISSPMAKTFEYARLDESLSHILCTTSPPSWLFIH----DRHHIISSTAIRKKIIEQDNT  211 (216)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~ISST~IR~~l~~~~~i  211 (216)
                      -.                         .-..+...+    .....||.|+||++|++|+.|
T Consensus       177 c~-------------------------~~~~~~~~~~~~~~~~~~ISGT~iR~~L~~G~~i  212 (235)
T d1x6va2         177 NK-------------------------KKKRMDYYDSEHHEDFEFISGTRMRKLAREGQKP  212 (235)
T ss_dssp             ET-------------------------TTTEEEECCSTTGGGEECCCHHHHHHHHHTTCCC
T ss_pred             EC-------------------------CCCCEECCCCCCCCCEEEECHHHHHHHHHCCCCC
T ss_conf             04-------------------------5784632778998770652689999999874988


No 18 
>d1v47a2 c.26.1.5 (A:136-349) ATP sulfurylase catalytic domain {Thermus thermophilus [TaxId: 274]}
Probab=97.89  E-value=4.9e-05  Score=46.77  Aligned_cols=157  Identities=16%  Similarity=0.176  Sum_probs=81.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCC----CCCCCCCHHHHHH---HHHH
Q ss_conf             89713389999999999862998899997589987555668899999999863104----7532134255310---0032
Q gi|254780649|r   28 NFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIK----NPRIRITAFEAYL---NHTE  100 (216)
Q Consensus        28 SFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~----~~~i~v~~~E~~~---~~sy  100 (216)
                      |=||+|.||-.+.+.+++..  |.+++.|. ..+.|  .+-.+.+-|+.--+.+++    .+++.+..+....   |+.-
T Consensus        28 Trnp~Hr~He~i~~~a~~~~--~~lli~p~-vG~~k--~gd~~~~~r~~~y~~~~~~~~~~~~v~l~~~~~~m~yaGPrE  102 (214)
T d1v47a2          28 TRNAPHRAHEYLIRLGLELA--DGVLVHPI-LGAKK--PDDFPTEVIVEAYQALIRDFLPQERVAFFGLATPMRYAGPKE  102 (214)
T ss_dssp             ESSCCCHHHHHHHHHHHHHS--SEEEEEEB-CSCCC--TTSCCHHHHHHHHHHHHHHHSCGGGEEECCBCSCCCCCTHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHC--CCEEEEEE-ECCCC--CCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHH
T ss_conf             38998789999999999705--87799642-23687--566588999999999985237877299985476210046158


Q ss_pred             HHHHHHHHHCCCCCCCEEEECCCCCHHHHHHH---HHHHHHHHHC---CEEEEECCCCCHHHHCCHHHHHHHHCCCCHHH
Q ss_conf             89999997201367843896168813577777---6199999758---98999389987143215899998632588123
Q gi|254780649|r  101 TFHTILQVKKHNKSVNFVWIMGADNIKSFHQW---HHWKRIVTTV---PIAIIDRFDVTFNYISSPMAKTFEYARLDESL  174 (216)
Q Consensus       101 T~dtL~~lk~~~p~~~l~fiiG~D~l~~l~~W---~~~~~ll~~~---~iiV~~R~g~~~~~~~~~~~~~~~~~~~~~~~  174 (216)
                      .  .+.++-.++=+++ .||+|-|-. +....   +..+++++..   .|-++.=++.-.-.       ...........
T Consensus       103 A--~lhAiirkN~Gct-hfiVGRDHA-G~g~~Y~~~~a~~i~~~~~~l~I~ii~~~e~~Yc~-------~c~~~v~~~~c  171 (214)
T d1v47a2         103 A--VFHALVRKNFGAT-HFLVGRDHA-GVGDFYDPYAAHRIFDRLPPLGIEIVKVGAVFHCP-------LCGGIASERTC  171 (214)
T ss_dssp             H--HHHHHHHHHTTCS-EEEECTTTT-CSTTCSCTTHHHHGGGGSCCCSSEEEECCCEEEET-------TTTEEEETTTS
T ss_pred             H--HHHHHHHHHCCCC-EEEECCCCC-CHHHCCCCHHHHHHHHHCCCCCCEEEECCCCEEEH-------HHCCEEECCCC
T ss_conf             9--9999999865887-388747677-62213793355689875772682699716225336-------43856333557


Q ss_pred             HHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCC
Q ss_conf             3454205898099980746886889999999879685
Q gi|254780649|r  175 SHILCTTSPPSWLFIHDRHHIISSTAIRKKIIEQDNT  211 (216)
Q Consensus       175 ~~~~~~~~~~~~~~i~~~~~~ISST~IR~~l~~~~~i  211 (216)
                      .+.   .        ......||.|+||++|++|+.|
T Consensus       172 ~~~---~--------~~~~~~ISGT~iR~~L~~G~~~  197 (214)
T d1v47a2         172 PEG---H--------REKRTAISMTKVRALLREGKAP  197 (214)
T ss_dssp             CGG---G--------GGGCEECCHHHHHHHHHTTCCC
T ss_pred             CCC---C--------CCCCEECCHHHHHHHHHCCCCC
T ss_conf             887---7--------6444550789999999875998


No 19 
>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}
Probab=82.64  E-value=0.84  Score=22.35  Aligned_cols=90  Identities=8%  Similarity=0.040  Sum_probs=47.2

Q ss_pred             EEECCCCCCCCEEEEECCCCCCCCHHHHH-HHHHHHHHCCCCEEEEEECCCCCCCCC---CCCCCHHHHHHHHHHHCCCC
Q ss_conf             02167789987899827789713389999-999999862998899997589987555---66889999999986310475
Q gi|254780649|r   10 IMRMPKVEPGMKIGLFGGNFNPPHHGHIE-IAQIAIKKLNLDQLWWIITPFNSVKNY---NLSSSLEKRISLSQSLIKNP   85 (216)
Q Consensus        10 ~~~~p~~~~~mkIgifGGSFdPiH~gHl~-ia~~~~~~l~ld~v~~ips~~~p~K~~---~~~~~~~~R~~m~~~~~~~~   85 (216)
                      .|..|......||||+||-       -|. |.-.+..++++.-+.+-|.+..|-...   ....++.+.-++.+.+.. .
T Consensus         2 ~~~~~~~~~~~kigIlGgG-------QL~rMla~aA~~lG~~v~v~d~~~~~PA~~va~~~i~~~~~d~~~l~~~~~~-~   73 (111)
T d1kjqa2           2 LLGTALRPAATRVMLLGSG-------ELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVEL-E   73 (111)
T ss_dssp             CBCCTTSTTCCEEEEESCS-------HHHHHHHHHHHTTTCEEEEEESSTTCGGGGGSSEEEECCTTCHHHHHHHHHH-H
T ss_pred             CCCCCCCCCCCEEEEEECC-------HHHHHHHHHHHHCCCEEEEECCCCCCCHHHCCCEEEECCCCCHHHHHHHHHH-H
T ss_conf             4378989999799999377-------9899999999988998999849999836551776899887899999999986-2


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             3213425531000328999999720
Q gi|254780649|r   86 RIRITAFEAYLNHTETFHTILQVKK  110 (216)
Q Consensus        86 ~i~v~~~E~~~~~syT~dtL~~lk~  110 (216)
                      ...|-++|.+.=   .+++|..+.+
T Consensus        74 ~~DviT~E~EnI---~~~~L~~le~   95 (111)
T d1kjqa2          74 KPHYIVPEIEAI---ATDMLIQLEE   95 (111)
T ss_dssp             CCSEEEECSSCS---CHHHHHHHHH
T ss_pred             CCCEEEEEECCC---CHHHHHHHHH
T ss_conf             775688873676---8999999997


No 20 
>d1ihoa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Escherichia coli [TaxId: 562]}
Probab=63.01  E-value=4.1  Score=18.36  Aligned_cols=59  Identities=15%  Similarity=0.239  Sum_probs=36.0

Q ss_pred             CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC------CCCCCCHHHHHHHHHHH
Q ss_conf             8789982778971338999999999986299889999758998755------56688999999998631
Q gi|254780649|r   19 GMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKN------YNLSSSLEKRISLSQSL   81 (216)
Q Consensus        19 ~mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~------~~~~~~~~~R~~m~~~~   81 (216)
                      +.+||+-+ |--=.|.||+.+.+.|.+..  |.|+ +--..||..=      ..+.-+.+.=+++|+.+
T Consensus        21 g~~ig~VP-TMGaLH~GHlsLi~~A~~~~--~~vv-vSIFVNP~QF~~~eD~~~YPr~l~~D~~~l~~~   85 (282)
T d1ihoa_          21 GKRVALVP-TMGNLHDGHMKLVDEAKARA--DVVV-VSIFVNPMQFDRPEDLARYPRTLQEDCEKLNKR   85 (282)
T ss_dssp             TCCEEEEE-ECSCCCHHHHHHHHHHHHHC--SEEE-EEECCCGGGCSSHHHHHHSCCCHHHHHHHHHHT
T ss_pred             CCCEEEEC-CCCCHHHHHHHHHHHHHHHC--CCEE-EEEEECCCCCCCCCHHHCCCCCHHHHHHHHHHC
T ss_conf             99099982-87505489999999998748--9689-999736765764211212676388889999754


No 21 
>d1luca_ c.1.16.1 (A:) Bacterial luciferase alpha chain, LuxA {Vibrio harveyi [TaxId: 669]}
Probab=53.20  E-value=6.6  Score=17.16  Aligned_cols=35  Identities=26%  Similarity=0.565  Sum_probs=23.9

Q ss_pred             CEEEEECCCCCCCCHHHHHHHHHHH------HHCCCCEEEE
Q ss_conf             7899827789713389999999999------8629988999
Q gi|254780649|r   20 MKIGLFGGNFNPPHHGHIEIAQIAI------KKLNLDQLWW   54 (216)
Q Consensus        20 mkIgifGGSFdPiH~gHl~ia~~~~------~~l~ld~v~~   54 (216)
                      ||.|+|--+++|+..++-...+..+      +.+++|.+|+
T Consensus         1 M~fg~f~~~~~~~~~~~~~~~~~~~~~a~~ae~~Gf~~~~~   41 (355)
T d1luca_           1 MKFGNFLLTYQPPELSQTEVMKRLVNLGKASEGCGFDTVWL   41 (355)
T ss_dssp             CEEEEEECCCCCTTCCHHHHHHHHHHHHHHTGGGTCSEEEE
T ss_pred             CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             91357668879999799999999999999999879989996


No 22 
>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]}
Probab=51.72  E-value=6.2  Score=17.34  Aligned_cols=30  Identities=13%  Similarity=-0.015  Sum_probs=22.9

Q ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             899827789713389999999999862998
Q gi|254780649|r   21 KIGLFGGNFNPPHHGHIEIAQIAIKKLNLD   50 (216)
Q Consensus        21 kIgifGGSFdPiH~gHl~ia~~~~~~l~ld   50 (216)
                      +|+|||||=..+..-+...|.++-+.+.-.
T Consensus         3 ~v~VF~~s~~~~~~~~~~~a~~lg~~la~~   32 (179)
T d1t35a_           3 TICVFAGSNPGGNEAYKRKAAELGVYMAEQ   32 (179)
T ss_dssp             EEEEECCSSCCSSTHHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             799986579995979999999999999987


No 23 
>d1v8fa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Thermus thermophilus [TaxId: 274]}
Probab=43.17  E-value=9.6  Score=16.23  Aligned_cols=58  Identities=17%  Similarity=0.252  Sum_probs=34.6

Q ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC-----C-CCCCCCHHHHHHHHHHH
Q ss_conf             78998277897133899999999998629988999975899875-----5-56688999999998631
Q gi|254780649|r   20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVK-----N-YNLSSSLEKRISLSQSL   81 (216)
Q Consensus        20 mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K-----~-~~~~~~~~~R~~m~~~~   81 (216)
                      .+||+-+ |--=.|.||+.+++.|++..  |.|+ +--.+||..     + ..+.-+.+.=+++|+.+
T Consensus        17 ~~i~~VP-TMGaLH~GHlsLi~~a~~~~--~~vv-vSIFVNP~QF~~~eD~~~YPr~~~~D~~~l~~~   80 (276)
T d1v8fa_          17 EGVGFVP-TMGYLHRGHLALVERARREN--PFVV-VSVFVNPLQFGPGEDYHRYPRDLERDRALLQEA   80 (276)
T ss_dssp             SCEEEEE-ECSSCCHHHHHHHHHHHHHC--SEEE-EEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHT
T ss_pred             CCEEEEC-CCCCHHHHHHHHHHHHHHHC--CCEE-EEEEECCCCCCCCCHHHCCCCCHHHHHHHHHHC
T ss_conf             9889985-87607489999999999758--9789-999866766787101220564256349999857


No 24 
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=42.59  E-value=5.3  Score=17.71  Aligned_cols=33  Identities=18%  Similarity=0.221  Sum_probs=22.4

Q ss_pred             EEEEECCCCCC----CCHHHHHHHHHHHHH--CCCCEEEEE
Q ss_conf             89982778971----338999999999986--299889999
Q gi|254780649|r   21 KIGLFGGNFNP----PHHGHIEIAQIAIKK--LNLDQLWWI   55 (216)
Q Consensus        21 kIgifGGSFdP----iH~gHl~ia~~~~~~--l~ld~v~~i   55 (216)
                      ++.+|-| |||    .|.||+-.....+..  ++. .++++
T Consensus        31 ~~~~Y~G-~DPTa~sLHlGhlv~l~~l~~~q~~Gh-~~i~L   69 (323)
T d1jila_          31 QVTLYCG-ADPTADSLHIGHLLPFLTLRRFQEHGH-RPIVL   69 (323)
T ss_dssp             CCEEEEE-ECCSSSSCBHHHHHHHHHHHHHHHTTC-EEEEE
T ss_pred             CCEEEEC-CCCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEE
T ss_conf             9479973-068976320878999999999999399-60786


No 25 
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}
Probab=39.94  E-value=11  Score=15.94  Aligned_cols=16  Identities=44%  Similarity=0.615  Sum_probs=11.9

Q ss_pred             CEEEEECCCCCCCCHH
Q ss_conf             7899827789713389
Q gi|254780649|r   20 MKIGLFGGNFNPPHHG   35 (216)
Q Consensus        20 mkIgifGGSFdPiH~g   35 (216)
                      |||++++..|-|...|
T Consensus         1 MkIl~~~~~~pP~~~G   16 (437)
T d2bisa1           1 MKVLLLGFEFLPVKVG   16 (437)
T ss_dssp             CEEEEECSCCTTCCSS
T ss_pred             CEEEEECCCCCCCCCC
T ss_conf             9879987745884558


No 26 
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}
Probab=39.51  E-value=5.7  Score=17.52  Aligned_cols=36  Identities=8%  Similarity=0.019  Sum_probs=23.7

Q ss_pred             HHEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             3202167789987899827789713389999999999862
Q gi|254780649|r    8 QDIMRMPKVEPGMKIGLFGGNFNPPHHGHIEIAQIAIKKL   47 (216)
Q Consensus         8 ~~~~~~p~~~~~mkIgifGGSFdPiH~gHl~ia~~~~~~l   47 (216)
                      ..+=.|-|.++|+|+|||||+=    .|+-.++..+.+..
T Consensus        32 r~ID~l~PigrGQr~~I~g~~g----~GKT~l~~~i~~~~   67 (289)
T d1xpua3          32 RVLDLASPIGRGQRGLIVAPPK----AGKTMLLQNIAQSI   67 (289)
T ss_dssp             HHHHHHSCCBTTCEEEEEECSS----SSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCCCEEEEECCCC----CCHHHHHHHHHHHH
T ss_conf             3564125645787556867999----88789999999977


No 27 
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=36.25  E-value=5.2  Score=17.78  Aligned_cols=45  Identities=22%  Similarity=0.215  Sum_probs=28.5

Q ss_pred             ECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHC---CCCEEEEEECCCC
Q ss_conf             167789987899827789713389999999999862---9988999975899
Q gi|254780649|r   12 RMPKVEPGMKIGLFGGNFNPPHHGHIEIAQIAIKKL---NLDQLWWIITPFN   60 (216)
Q Consensus        12 ~~p~~~~~mkIgifGGSFdPiH~gHl~ia~~~~~~l---~ld~v~~ips~~~   60 (216)
                      .|-|..+|+|+|||||+    -.|+-.++.......   +-+.++++-.+..
T Consensus        61 ~l~pigkGQr~~If~~~----g~GKt~l~~~i~~~~~~~~~~v~V~~~iGer  108 (276)
T d2jdid3          61 LLAPYAKGGKIGLFGGA----GVGKTVLIMELINNVAKAHGGYSVFAGVGER  108 (276)
T ss_dssp             HHSCEETTCEEEEEECT----TSSHHHHHHHHHHHHTTTCSSEEEEEEESCC
T ss_pred             EECCCCCCCEEEEECCC----CCCHHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf             02563678877766799----9898999999999887617996999995557


No 28 
>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}
Probab=35.67  E-value=13  Score=15.54  Aligned_cols=40  Identities=8%  Similarity=-0.080  Sum_probs=27.2

Q ss_pred             CCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCH
Q ss_conf             9889999758998755566889999999986310475321342
Q gi|254780649|r   49 LDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKNPRIRITA   91 (216)
Q Consensus        49 ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~~~~i~v~~   91 (216)
                      -.+++++|++.||-   -...+.++|.++++.+.++.-+.|+|
T Consensus       173 ~~~~~~~~~p~NPT---G~~~s~~~~~~l~~~a~~~~~~ii~D  212 (397)
T d3tata_         173 RSIVLLHPCCHNPT---GADLTNDQWDAVIEILKARELIPFLD  212 (397)
T ss_dssp             SCCCEECSSSCSSS---CCCCCHHHHHHHHHHHHHTTCCCEEC
T ss_pred             CCEEEEECCCCCCC---CEECCHHHHHHHHHHHHHCCEEEEEE
T ss_conf             52899826899997---84178899999999985369469941


No 29 
>d1weha_ c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA0294) {Thermus thermophilus [TaxId: 274]}
Probab=34.63  E-value=13  Score=15.44  Aligned_cols=29  Identities=14%  Similarity=0.027  Sum_probs=20.5

Q ss_pred             CE-EEEECCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             78-998277897133899999999998629
Q gi|254780649|r   20 MK-IGLFGGNFNPPHHGHIEIAQIAIKKLN   48 (216)
Q Consensus        20 mk-IgifGGSFdPiH~gHl~ia~~~~~~l~   48 (216)
                      || |++||||=..+.......|..+-+.+.
T Consensus         1 mk~V~Vfgss~~~~~~~~~~~a~~lG~~la   30 (171)
T d1weha_           1 MRLLAVFVSSRLSPEDPLYARWVRYGEVLA   30 (171)
T ss_dssp             CEEEEEECCSSCCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf             988999915899989989999999999999


No 30 
>d1e4ea1 c.30.1.2 (A:2-131) D-alanine:D-lactate ligase VanA, N-domain {Enterococcus faecium [TaxId: 1352]}
Probab=34.59  E-value=13  Score=15.44  Aligned_cols=44  Identities=16%  Similarity=0.139  Sum_probs=33.1

Q ss_pred             CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEE---ECCCCCC
Q ss_conf             8789982778971338999999999986299889999---7589987
Q gi|254780649|r   19 GMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWI---ITPFNSV   62 (216)
Q Consensus        19 ~mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~i---ps~~~p~   62 (216)
                      .|||||+.|=..+=|.-=+.-|..+.+.+.-++.-..   ++....+
T Consensus         2 K~kV~vl~GG~S~EheVSl~Sa~~v~~~L~~~~y~v~~i~i~k~g~w   48 (130)
T d1e4ea1           2 RIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVW   48 (130)
T ss_dssp             CEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCE
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCE
T ss_conf             71899996878600698999899999863334405799874588717


No 31 
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]}
Probab=33.46  E-value=14  Score=15.33  Aligned_cols=40  Identities=23%  Similarity=0.277  Sum_probs=23.2

Q ss_pred             CEEEEECCCCCC----CCHHHHHHHHHHHHHCCC-CEEEEEECCCC
Q ss_conf             789982778971----338999999999986299-88999975899
Q gi|254780649|r   20 MKIGLFGGNFNP----PHHGHIEIAQIAIKKLNL-DQLWWIITPFN   60 (216)
Q Consensus        20 mkIgifGGSFdP----iH~gHl~ia~~~~~~l~l-d~v~~ips~~~   60 (216)
                      -++.+|-| |+|    .|.||+-.+......... .++++++...+
T Consensus        32 ~~~~vY~G-~~PTg~sLHlGh~v~~~~~~~lq~~g~~~~~~iad~~   76 (343)
T d1h3fa1          32 RPLTVKLG-ADPTRPDLHLGHAVVLRKMRQFQELGHKVVLIIGDFT   76 (343)
T ss_dssp             SCCEEEEE-ECTTCCSCBHHHHHHHHHHHHHHHTTCEEEEEECCCC
T ss_pred             CCCEEEEE-ECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECHH
T ss_conf             99779982-5689975209999999999999987994699970425


No 32 
>d1fyea_ c.23.16.4 (A:) Aspartyl dipeptidase PepE {Salmonella typhimurium [TaxId: 90371]}
Probab=32.71  E-value=14  Score=15.26  Aligned_cols=96  Identities=9%  Similarity=0.110  Sum_probs=49.8

Q ss_pred             CEEEEECCCCCC----CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf             789982778971----3389999999999862998899997589987555668899999999863104753213425531
Q gi|254780649|r   20 MKIGLFGGNFNP----PHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKNPRIRITAFEAY   95 (216)
Q Consensus        20 mkIgifGGSFdP----iH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~~~~i~v~~~E~~   95 (216)
                      ||+-+...++-|    .....=.+++.+..   -.+|.+||+..+..       +.....+..+..+....+++..+...
T Consensus         1 M~llL~S~~~~~gg~~l~~~~~~l~~~~~~---~~~i~~IPtAs~~~-------~~~~y~~~~~~~~~~l~~~v~~l~~~   70 (229)
T d1fyea_           1 MELLLLSNSTLPGKAWLEHALPLIANQLNG---RRSAVFIPFAGVTQ-------TWDEYTDKTAEVLAPLGVNVTGIHRV   70 (229)
T ss_dssp             CEEEEESCSCCTTSCTTTTTHHHHHHHHTT---CCEEEEECTTCCSS-------CHHHHHHHHHHHHGGGTCEEEEGGGS
T ss_pred             CEEEEECCCCCCCCCHHHHHHHHHHHHHCC---CCEEEEECCCCCCC-------CHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             929997477568862699999999987479---97599987899888-------62599999999864427514784145


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf             0003289999997201367843896168813577777619
Q gi|254780649|r   96 LNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHW  135 (216)
Q Consensus        96 ~~~syT~dtL~~lk~~~p~~~l~fiiG~D~l~~l~~W~~~  135 (216)
                      .      +.+..+    .+++.+|+-|-|++.-+..|++.
T Consensus        71 ~------~~~~~l----~~ad~I~v~GGn~~~l~~~l~~t  100 (229)
T d1fyea_          71 A------DPLAAI----EKAEIIIVGGGNTFQLLKESRER  100 (229)
T ss_dssp             S------CHHHHH----HHCSEEEECCSCHHHHHHHHHHT
T ss_pred             C------CHHHHH----HHCCEEEECCCCHHHHHHHHHHC
T ss_conf             4------588998----64999999688899999999708


No 33 
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}
Probab=32.38  E-value=6.2  Score=17.31  Aligned_cols=34  Identities=21%  Similarity=0.361  Sum_probs=22.5

Q ss_pred             CEEEEECCCCCC----CCHHHHHHHHHHHHH--CCCCEEEEE
Q ss_conf             789982778971----338999999999986--299889999
Q gi|254780649|r   20 MKIGLFGGNFNP----PHHGHIEIAQIAIKK--LNLDQLWWI   55 (216)
Q Consensus        20 mkIgifGGSFdP----iH~gHl~ia~~~~~~--l~ld~v~~i   55 (216)
                      .++.+|-| |||    .|.||+-.....+..  .+. .++++
T Consensus        29 ~~~~~Y~G-~DPTa~sLHlGhlv~l~~l~~~q~~Gh-~~i~L   68 (319)
T d2ts1a_          29 ERVTLYCG-FDPTADSLHIGHLATILTMRRFQQAGH-RPIAL   68 (319)
T ss_dssp             SCCEEEEE-ECCSSSSCBGGGHHHHHHHHHHHHTTC-EEEEE
T ss_pred             CCCEEEEE-ECCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEE
T ss_conf             99669980-268987520878999999999998099-61687


No 34 
>d2r5fa1 c.124.1.8 (A:59-316) Transcriptional regulator PSPTO2395 {Pseudomonas syringae [TaxId: 317]}
Probab=30.22  E-value=16  Score=15.01  Aligned_cols=25  Identities=16%  Similarity=0.146  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             9999999998629988999975899
Q gi|254780649|r   36 HIEIAQIAIKKLNLDQLWWIITPFN   60 (216)
Q Consensus        36 Hl~ia~~~~~~l~ld~v~~ips~~~   60 (216)
                      |+.+.+.+.++|+|.+++++|+..+
T Consensus         4 ~~eLe~~L~~kfgL~~~~Vvp~~~~   28 (258)
T d2r5fa1           4 HLELETRLQKMYGIRQVIVVEATEP   28 (258)
T ss_dssp             THHHHHHHHHHHTCSEEEEECCSST
T ss_pred             CHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf             6999999999719988999679999


No 35 
>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}
Probab=29.59  E-value=11  Score=15.93  Aligned_cols=38  Identities=18%  Similarity=0.153  Sum_probs=23.0

Q ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHH--HCCCCEEEEEECCCCC
Q ss_conf             78998277897133899999999998--6299889999758998
Q gi|254780649|r   20 MKIGLFGGNFNPPHHGHIEIAQIAIK--KLNLDQLWWIITPFNS   61 (216)
Q Consensus        20 mkIgifGGSFdPiH~gHl~ia~~~~~--~l~ld~v~~ips~~~p   61 (216)
                      |||||.|+|=    +.=.++++.+.+  .+...++..+-+....
T Consensus         1 mKVaIiGATG----yvG~eLi~lLl~~~~~p~~~i~~~ss~~~~   40 (147)
T d1mb4a1           1 MRVGLVGWRG----MVGSVLMQRMVEERDFDLIEPVFFSTSQIG   40 (147)
T ss_dssp             CEEEEESCSS----HHHHHHHHHHHHTTGGGGSEEEEEESSCCS
T ss_pred             CEEEEECCCC----HHHHHHHHHHHHCCCCCCEEEEEECCCCCC
T ss_conf             9799999845----999999999995689994688982144456


No 36 
>d2nx2a1 c.129.1.2 (A:1-177) Hypothetical protein YpsA {Bacillus subtilis [TaxId: 1423]}
Probab=28.65  E-value=17  Score=14.85  Aligned_cols=52  Identities=4%  Similarity=0.084  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHH-----HHHHHHHHHCCEEEE-ECCCC
Q ss_conf             3289999997201367843896168813577777-----619999975898999-38998
Q gi|254780649|r   99 TETFHTILQVKKHNKSVNFVWIMGADNIKSFHQW-----HHWKRIVTTVPIAII-DRFDV  152 (216)
Q Consensus        99 syT~dtL~~lk~~~p~~~l~fiiG~D~l~~l~~W-----~~~~~ll~~~~iiV~-~R~g~  152 (216)
                      ..+.+++..+|+.||+.++..++=..++..  +|     ..+++|++.+++++. ....+
T Consensus        56 ~~aAevvl~lk~~yp~ikL~~~lPf~~~~~--~w~e~~~~~y~~ll~~aD~v~~vs~~~y  113 (177)
T d2nx2a1          56 LWAAEAAYDLQEEYPDLKVAVITPFYEQEK--NWKEPNKEQYEAVLAQADYEASLTHRPY  113 (177)
T ss_dssp             HHHHHHHHTTTTTCTTCEEEEEESSBCTTT--TSCHHHHHHHHHHHHHCSEEEESSSSBC
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCCCCC--CCCHHHHHHHHHHHHHCCEEEEECCCCC
T ss_conf             999999999850378835999864613043--8998999999999962998998144788


No 37 
>d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}
Probab=28.45  E-value=17  Score=14.83  Aligned_cols=83  Identities=17%  Similarity=0.158  Sum_probs=44.0

Q ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEE-EEEECCCCCCCCCCCCCCHHHHH-HHHHHHC-CCCCCCCCHHHHHH
Q ss_conf             789982778971338999999999986299889-99975899875556688999999-9986310-47532134255310
Q gi|254780649|r   20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQL-WWIITPFNSVKNYNLSSSLEKRI-SLSQSLI-KNPRIRITAFEAYL   96 (216)
Q Consensus        20 mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v-~~ips~~~p~K~~~~~~~~~~R~-~m~~~~~-~~~~i~v~~~E~~~   96 (216)
                      ||||||-.-     .|=+.+++++++.+.-..+ ++-=+...|.-. +......+|. ++++-+. .+.++.|-.+    
T Consensus         1 mkIgifDSG-----iGGLtVl~~l~~~lP~~~~iY~~D~a~~PYG~-ks~~~I~~~~~~~~~~l~~~~~~~iViAC----   70 (105)
T d1b74a1           1 MKIGIFDSG-----VGGLTVLKAIRNRYRKVDIVYLGDTARVPYGI-RSKDTIIRYSLECAGFLKDKGVDIIVVAC----   70 (105)
T ss_dssp             CEEEEEESS-----STHHHHHHHHHHHSSSCEEEEEECGGGCCGGG-SCHHHHHHHHHHHHHHHHTTTCSEEEECC----
T ss_pred             CEEEEEECC-----CCHHHHHHHHHHHCCCCCEEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHCCCCEEEEEC----
T ss_conf             979998389-----78799999999978999879985688798898-99999999999999999974999899805----


Q ss_pred             HHHHHHHHHHHHHCCCC
Q ss_conf             00328999999720136
Q gi|254780649|r   97 NHTETFHTILQVKKHNK  113 (216)
Q Consensus        97 ~~syT~dtL~~lk~~~p  113 (216)
                      ++ -|...+..|++.++
T Consensus        71 NT-aS~~al~~lr~~~~   86 (105)
T d1b74a1          71 NT-ASAYALERLKKEIN   86 (105)
T ss_dssp             HH-HHHHHHHHHHHHSS
T ss_pred             CC-HHHHHHHHHHHHCC
T ss_conf             71-78999999998789


No 38 
>d3efba1 c.124.1.8 (A:11-265) Sor-operon regulator SorC {Shigella flexneri [TaxId: 623]}
Probab=27.12  E-value=18  Score=14.69  Aligned_cols=81  Identities=7%  Similarity=0.005  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCC--CCCCCCHHHHHHHHHHHH-HHHHHHHCCC
Q ss_conf             9999999998629988999975899875556688999999998631047--532134255310003289-9999972013
Q gi|254780649|r   36 HIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKN--PRIRITAFEAYLNHTETF-HTILQVKKHN  112 (216)
Q Consensus        36 Hl~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~~--~~i~v~~~E~~~~~syT~-dtL~~lk~~~  112 (216)
                      ++.+.+++.++|+|.+++++|+..+.        +...+..+.++|++-  ..+.-.+ -+......|. .+..+|.+..
T Consensus         2 ~~~Le~~L~~~fgL~~~~Vv~~~~~~--------~~~~~~~lg~aAA~~l~~~l~~~~-~igvswG~T~~~~~~~l~~~~   72 (255)
T d3efba1           2 NLWLEQQLKQKFGLKDVVVVSGNDED--------EETQLAMMGLHGAQLLDRLLEPGD-IVGFSWGRAVSALVENLPQAG   72 (255)
T ss_dssp             CHHHHHHHHHHHTCSEEEEECCCSCC--------HHHHHHHHHHHHHHHHHHHCCTTC-EEEECCSHHHHHHHHTCCCCS
T ss_pred             CHHHHHHHHHHHCCCEEEEECCCCCC--------CHHHHHHHHHHHHHHHHHHCCCCC-EEEEECCHHHHHHHHHHCCCC
T ss_conf             28999999998399889997799876--------068999999999999998678998-899938688999999822003


Q ss_pred             --CCCCEEEECCCCC
Q ss_conf             --6784389616881
Q gi|254780649|r  113 --KSVNFVWIMGADN  125 (216)
Q Consensus       113 --p~~~l~fiiG~D~  125 (216)
                        .+..++.++|.+.
T Consensus        73 ~~~~~~~v~l~G~~~   87 (255)
T d3efba1          73 QSRQLICVPIIGGPS   87 (255)
T ss_dssp             SCCCCEEEESBCBCT
T ss_pred             CCCCCEEEEECCCCC
T ss_conf             467816998146767


No 39 
>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}
Probab=26.51  E-value=18  Score=14.62  Aligned_cols=41  Identities=12%  Similarity=0.073  Sum_probs=27.0

Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCH
Q ss_conf             99889999758998755566889999999986310475321342
Q gi|254780649|r   48 NLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKNPRIRITA   91 (216)
Q Consensus        48 ~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~~~~i~v~~   91 (216)
                      .-..+++++++.||-   -...+.++|.+++.+|.++.-+.|+|
T Consensus       168 ~~~~i~~~~~p~NPT---G~~~s~e~~~~l~~la~~~~~~ii~D  208 (394)
T d2ay1a_         168 KGDMVLLHGCCHNPT---GANLTLDQWAEIASILEKTGALPLID  208 (394)
T ss_dssp             TTCEEEEESSSCTTT---CCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCEEEEECCCCCCC---CCCCCHHHHHHHHHHHHCCEEEEEEE
T ss_conf             686899947999989---99899999999998753042899875


No 40 
>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=26.39  E-value=15  Score=15.12  Aligned_cols=43  Identities=9%  Similarity=0.120  Sum_probs=27.6

Q ss_pred             CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf             899878998277897133899999999998629988999975899875
Q gi|254780649|r   16 VEPGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVK   63 (216)
Q Consensus        16 ~~~~mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~K   63 (216)
                      ++..+||||.|+|=    +.=.++++.+.++=.+ ++..+-+..+..|
T Consensus         2 s~~kikVaIlGATG----yvG~elirLL~~HP~~-ei~~l~S~~~aG~   44 (183)
T d2cvoa1           2 SGEEVRIAVLGASG----YTGAEIVRLLANHPQF-RIKVMTADRKAGE   44 (183)
T ss_dssp             CSSCEEEEEESCSS----HHHHHHHHHHTTCSSE-EEEEEECSTTTTS
T ss_pred             CCCCCEEEEECCCC----HHHHHHHHHHHHCCCC-EEEEEECCCCCCC
T ss_conf             99820799989664----8999999999828994-6998742465897


No 41 
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Probab=25.23  E-value=9.8  Score=16.17  Aligned_cols=22  Identities=9%  Similarity=0.138  Sum_probs=16.0

Q ss_pred             ECCCCCCCCEEEEECCCCCCCC
Q ss_conf             1677899878998277897133
Q gi|254780649|r   12 RMPKVEPGMKIGLFGGNFNPPH   33 (216)
Q Consensus        12 ~~p~~~~~mkIgifGGSFdPiH   33 (216)
                      .|-+..+|+|+|||||+-=+-+
T Consensus        61 ~l~pig~GQr~~If~~~g~GKt   82 (285)
T d2jdia3          61 SLVPIGRGQRELIIGDRQTGKT   82 (285)
T ss_dssp             HHSCCBTTCBCEEEESTTSSHH
T ss_pred             CCCCCCCCCEEEEECCCCCCHH
T ss_conf             3467667877876568888858


No 42 
>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}
Probab=25.14  E-value=19  Score=14.47  Aligned_cols=38  Identities=11%  Similarity=0.153  Sum_probs=26.4

Q ss_pred             CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf             88999975899875556688999999998631047532134
Q gi|254780649|r   50 DQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKNPRIRIT   90 (216)
Q Consensus        50 d~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~~~~i~v~   90 (216)
                      -++++++++.||-   -...+.+++.++++.+.++.-+.|+
T Consensus       165 ~~~i~l~~P~NPT---G~v~s~~~l~~l~~~a~~~~~~ii~  202 (394)
T d1c7na_         165 NKALLFCSPHNPV---GRVWKKDELQKIKDIVLKSDLMLWS  202 (394)
T ss_dssp             EEEEEEESSBTTT---TBCCCHHHHHHHHHHHHHSSCEEEE
T ss_pred             CEEEEECCCCCCC---CEECCHHHHHHHHCCCCCCCEEEEC
T ss_conf             3299945523565---4125699953432034543205861


No 43 
>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=24.77  E-value=20  Score=14.43  Aligned_cols=29  Identities=21%  Similarity=0.111  Sum_probs=22.1

Q ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             78998277897133899999999998629
Q gi|254780649|r   20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLN   48 (216)
Q Consensus        20 mkIgifGGSFdPiH~gHl~ia~~~~~~l~   48 (216)
                      .||+|||||=.+...-+...|.++-+.+.
T Consensus         3 k~v~Vf~gs~~~~~~~~~~~a~~lg~~La   31 (181)
T d1ydhb_           3 RKICVFCGSHSGHREVFSDAAIELGNELV   31 (181)
T ss_dssp             SEEEEECCSCCCSSTHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             67999865789959789999999999999


No 44 
>d2okga1 c.124.1.8 (A:89-338) Central glycolytic gene regulator CggR {Bacillus subtilis [TaxId: 1423]}
Probab=24.10  E-value=20  Score=14.36  Aligned_cols=92  Identities=10%  Similarity=0.039  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCC--------CCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999862998899997589987555668899999999863104--------7532134255310003289999997
Q gi|254780649|r   37 IEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIK--------NPRIRITAFEAYLNHTETFHTILQV  108 (216)
Q Consensus        37 l~ia~~~~~~l~ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~--------~~~i~v~~~E~~~~~syT~dtL~~l  108 (216)
                      ..+.+.+.++|+|.+++++|+..+.       .+. .+-.+.+++++        +..+-|+ |    |+ -...+..++
T Consensus         7 ~~Le~~L~~kfgLk~~~Vv~~~~~~-------~~~-~~~~l~~aaA~~L~~~l~~~~~igvs-w----G~-T~~~~~~~l   72 (250)
T d2okga1           7 TLLEKTLKERLNLKDAIIVSGDSDQ-------SPW-VKKEMGRAAVACMKKRFSGKNIVAVT-G----GT-TIEAVAEMM   72 (250)
T ss_dssp             HHHHHHHHHHSCCSEEEEESSCTTT-------CTH-HHHHHHHHHHHHHHHHCCSEEEEEEC-C----SH-HHHHHHHHC
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCCC-------CHH-HHHHHHHHHHHHHHHHCCCCCEEEEE-C----CH-HHHHHHHHH
T ss_conf             9999999998399889996689887-------569-99999999999999866799889995-8----78-999999984


Q ss_pred             HCC--CCCCCEEEECCCCCH-HHHHHHHHHHHHHHHC
Q ss_conf             201--367843896168813-5777776199999758
Q gi|254780649|r  109 KKH--NKSVNFVWIMGADNI-KSFHQWHHWKRIVTTV  142 (216)
Q Consensus       109 k~~--~p~~~l~fiiG~D~l-~~l~~W~~~~~ll~~~  142 (216)
                      ...  +++..++-++|.+.- .....+.-...+.+.+
T Consensus        73 ~~~~~~~~~~~V~l~G~~~~~~~~~~~~i~~~la~~~  109 (250)
T d2okga1          73 TPDSKNRELLFVPARGGLGEDVKNQANTICAHMAEKA  109 (250)
T ss_dssp             CCCTTCCEEEEEESEEECC---CCHHHHHHHHHHHHH
T ss_pred             HCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHC
T ss_conf             1105688728998217888776759999999999872


No 45 
>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=23.50  E-value=21  Score=14.29  Aligned_cols=42  Identities=17%  Similarity=0.243  Sum_probs=25.6

Q ss_pred             CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf             987899827789713389999999999862998899997589987
Q gi|254780649|r   18 PGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSV   62 (216)
Q Consensus        18 ~~mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~ips~~~p~   62 (216)
                      .+.+||+- .|--=.|.||+.+.+.|.+.-+ |.|+. --..||.
T Consensus        28 ~g~~i~~V-PTMGaLH~GHlsLi~~a~~~~~-~~vvv-SIFVNP~   69 (286)
T d2a84a1          28 TGRRVMLV-PTMGALHEGHLALVRAAKRVPG-SVVVV-SIFVNPM   69 (286)
T ss_dssp             TTCCEEEE-EECSSCCHHHHHHHHHHHTSTT-CEEEE-EECCCCC
T ss_pred             HCCEEEEE-ECCCCHHHHHHHHHHHHHHCCC-CEEEE-EEEECCC
T ss_conf             29908999-3886341899999999864379-87999-9864665


No 46 
>d2q4oa1 c.129.1.1 (A:8-190) Hypothetical protein At2g37210/T2N18.3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=23.36  E-value=21  Score=14.27  Aligned_cols=29  Identities=17%  Similarity=0.080  Sum_probs=23.4

Q ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             78998277897133899999999998629
Q gi|254780649|r   20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLN   48 (216)
Q Consensus        20 mkIgifGGSFdPiH~gHl~ia~~~~~~l~   48 (216)
                      .||+|||||=.+...-+...|..+-+.+.
T Consensus         7 k~v~Vf~gs~~~~~~~~~~~a~~lg~~la   35 (183)
T d2q4oa1           7 RRICVFCGSSQGKKSSYQDAAVDLGNELV   35 (183)
T ss_dssp             SEEEEECCSSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             61899875799959789999999999999


No 47 
>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}
Probab=22.02  E-value=22  Score=14.11  Aligned_cols=40  Identities=10%  Similarity=0.045  Sum_probs=27.3

Q ss_pred             CCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCH
Q ss_conf             9889999758998755566889999999986310475321342
Q gi|254780649|r   49 LDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLIKNPRIRITA   91 (216)
Q Consensus        49 ld~v~~ips~~~p~K~~~~~~~~~~R~~m~~~~~~~~~i~v~~   91 (216)
                      -.++++++++.||-   ....+.++|-++++.|.++.-+.|+|
T Consensus       175 ~~~~iii~~p~NPT---G~~~s~e~~~~l~~~a~~~~~~ii~D  214 (401)
T d7aata_         175 KSIILLHACAHNPT---GVDPRQEQWKELASVVKKRNLLAYFD  214 (401)
T ss_dssp             TCEEEEESSSCTTT---CCCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEEECCCCCCC---CCCCCHHHHHHHHHHHHCCEEEEEEE
T ss_conf             61899964788985---54589999999999873563799986


No 48 
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]}
Probab=21.97  E-value=22  Score=14.11  Aligned_cols=53  Identities=6%  Similarity=0.255  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHH----------------HHHHHHHHHCCEEEEEC
Q ss_conf             003289999997201367843896168813577777----------------61999997589899938
Q gi|254780649|r   97 NHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQW----------------HHWKRIVTTVPIAIIDR  149 (216)
Q Consensus        97 ~~syT~dtL~~lk~~~p~~~l~fiiG~D~l~~l~~W----------------~~~~~ll~~~~iiV~~R  149 (216)
                      +....++.+..+.+.+++..+.++.|.|....+.+.                .+..+++..++++|++-
T Consensus       209 g~~~li~a~~~l~~~~~~~~~~ii~g~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps  277 (370)
T d2iw1a1         209 GVDRSIEALASLPESLRHNTLLFVVGQDKPRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPA  277 (370)
T ss_dssp             THHHHHHHHHTSCHHHHHTEEEEEESSSCCHHHHHHHHHHTCGGGEEEESCCSCHHHHHHHCSEEEECC
T ss_pred             CHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             033320111233233221000001122222232222222222222222332334442223333444322


No 49 
>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=21.50  E-value=18  Score=14.60  Aligned_cols=29  Identities=24%  Similarity=0.323  Sum_probs=16.5

Q ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             78998277897133899999999998629988999
Q gi|254780649|r   20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWW   54 (216)
Q Consensus        20 mkIgifGGSFdPiH~gHl~ia~~~~~~l~ld~v~~   54 (216)
                      |||||.||+=+   .| ..+|..+.+. + .+|.+
T Consensus         1 Mki~vigGaG~---iG-~alA~~la~~-G-~~V~l   29 (212)
T d1jaya_           1 MRVALLGGTGN---LG-KGLALRLATL-G-HEIVV   29 (212)
T ss_dssp             CEEEEETTTSH---HH-HHHHHHHHTT-T-CEEEE
T ss_pred             CEEEEEECCCH---HH-HHHHHHHHHC-C-CEEEE
T ss_conf             97999948839---99-9999999987-9-98999


No 50 
>d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644) {Thermus thermophilus [TaxId: 274]}
Probab=21.47  E-value=21  Score=14.29  Aligned_cols=40  Identities=13%  Similarity=0.141  Sum_probs=23.4

Q ss_pred             HHHEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             23202167789987899827789713389999999999862
Q gi|254780649|r    7 LQDIMRMPKVEPGMKIGLFGGNFNPPHHGHIEIAQIAIKKL   47 (216)
Q Consensus         7 ~~~~~~~p~~~~~mkIgifGGSFdPiH~gHl~ia~~~~~~l   47 (216)
                      .+....|++.+.+ .|++||||=..+-..+.+.|..+-+.+
T Consensus        22 ~~~~~~~~~~~~~-~V~Vfgsa~~~~~~~~y~~A~~LG~~L   61 (208)
T d1weka_          22 VEGFETLSELQVP-LVSVFGSARFGEGHPAYEAGYRLGRAL   61 (208)
T ss_dssp             HHHHHHHHHCCSC-EEEEECCSSCCTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCC-EEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf             8899998644998-699989778988586899999999999


No 51 
>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Probab=20.76  E-value=12  Score=15.63  Aligned_cols=32  Identities=22%  Similarity=0.263  Sum_probs=20.6

Q ss_pred             ECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             167789987899827789713389999999999862
Q gi|254780649|r   12 RMPKVEPGMKIGLFGGNFNPPHHGHIEIAQIAIKKL   47 (216)
Q Consensus        12 ~~p~~~~~mkIgifGGSFdPiH~gHl~ia~~~~~~l   47 (216)
                      .+-+..+|+|+|||||+    -.|+-.++..+....
T Consensus        60 ~l~pig~GQr~~Ifg~~----g~GKt~l~~~~~~~~   91 (276)
T d1fx0a3          60 AMIPVGRGQRELIIGDR----QTGKTAVATDTILNQ   91 (276)
T ss_dssp             TTSCCBTTCBCBEEESS----SSSHHHHHHHHHHTC
T ss_pred             CCCCCCCCCEEEECCCC----CCCHHHHHHHHHHHH
T ss_conf             01454677667600677----888579999977654


Done!