RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780649|ref|YP_003065062.1| nicotinic acid mononucleotide
adenylyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(216 letters)
>gnl|CDD|178839 PRK00071, nadD, nicotinic acid mononucleotide adenylyltransferase;
Provisional.
Length = 203
Score = 169 bits (430), Expect = 6e-43
Identities = 56/200 (28%), Positives = 93/200 (46%), Gaps = 16/200 (8%)
Query: 17 EPGMKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRIS 76
E +IGLFGG F+PPH+GH+ IA+ A ++L LD++W++ P K + LE R++
Sbjct: 1 EMMKRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGPPHKPQKPLAPLEHRLA 60
Query: 77 LSQSLIK-NPRIRITAFEAYLNHTE-TFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHH 134
+ + I NPR ++ E T T+ +++ V V+I+GAD + +W
Sbjct: 61 MLELAIADNPRFSVSDIELERPGPSYTIDTLRELRARYPDVELVFIIGADALAQLPRWKR 120
Query: 135 WKRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCTTSPPSWLFIHDRHH 194
W+ I+ V ++ R ++ P + A + +
Sbjct: 121 WEEILDLVHFVVVPRPGYPLEALALPALQQLLEA--------------AGAITLLDVPLL 166
Query: 195 IISSTAIRKKIIEQDNTRTL 214
ISSTAIR++I E R L
Sbjct: 167 AISSTAIRERIKEGRPIRYL 186
>gnl|CDD|161899 TIGR00482, TIGR00482, nicotinate (nicotinamide) nucleotide
adenylyltransferase. This model represents the
predominant bacterial/eukaryotic adenylyltransferase for
nicotinamide-nucleotide, its deamido form nicotinate
nucleotide, or both. The first activity,
nicotinamide-nucleotide adenylyltransferase (EC
2.7.7.1), synthesizes NAD by the salvage pathway, while
the second, nicotinate-nucleotide adenylyltransferase
(EC 2.7.7.18) synthesizes the immediate precursor of NAD
by the de novo pathway. In E. coli, NadD activity is
biased toward the de novo pathway while salvage activity
is channeled through the multifunctional NadR protein,
but this division of labor may be exceptional. The given
name of this model, nicotinate (nicotinamide) nucleotide
adenylyltransferase, reflects the lack of absolute
specificity with respect to substrate amidation state in
most species.
Length = 193
Score = 121 bits (305), Expect = 2e-28
Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 17/184 (9%)
Query: 24 LFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSLI- 82
LFGG+F+P H+GH+ +A+ A+ L+LD++ ++ T K ++S R+++ + I
Sbjct: 1 LFGGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANPPHKKTYEAASSHHRLAMLKLAIE 60
Query: 83 KNPRIRITAFEA-YLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKRIVTT 141
NP+ + FE + T T+ +KK V +I+GAD ++SF W W+ ++
Sbjct: 61 DNPKFEVDDFEIKRGGPSYTIDTLKHLKKKYPDVELYFIIGADALRSFPLWKDWQELLEL 120
Query: 142 VPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCTTSPPSWLFIHDRHHIISSTAI 201
V + I+ R Y L + + +H+ ISST I
Sbjct: 121 VHLVIVPR---------------PGYTLDKALLEKAILRMHHGNLTLLHNPRVPISSTEI 165
Query: 202 RKKI 205
R++I
Sbjct: 166 RQRI 169
>gnl|CDD|180860 PRK07152, nadD, putative nicotinate-nucleotide adenylyltransferase;
Validated.
Length = 342
Score = 100 bits (252), Expect = 2e-22
Identities = 59/186 (31%), Positives = 94/186 (50%), Gaps = 25/186 (13%)
Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRIS-LS 78
MKI +FGG+F+P H GHI IA+ AIKKL LD+L+++ T N K +S+ E R++ L
Sbjct: 1 MKIAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYINPFKKKQKASNGEHRLNMLK 60
Query: 79 QSLIKNPRIRITAFE-AYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSFHQWHHWKR 137
+L P++ ++ FE N + T TI KK + +I+G+DN++ F +W + +
Sbjct: 61 LALKNLPKMEVSDFEIKRQNVSYTIDTIKYFKKKYPNDEIYFIIGSDNLEKFKKWKNIEE 120
Query: 138 IVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCTTSPPSWLFIHDRHHIIS 197
I+ V I + R I+ K + L + +++ IS
Sbjct: 121 ILKKVQIVVFKR----KKNINKKNLKKYNV-------------------LLLKNKNLNIS 157
Query: 198 STAIRK 203
ST IRK
Sbjct: 158 STKIRK 163
>gnl|CDD|180781 PRK06973, PRK06973, nicotinic acid mononucleotide
adenylyltransferase; Provisional.
Length = 243
Score = 65.2 bits (159), Expect = 1e-11
Identities = 43/202 (21%), Positives = 85/202 (42%), Gaps = 18/202 (8%)
Query: 21 KIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQ- 79
+IG+ GG F+P H GH+ +A+ L+L +L I + ++S++ E R+++++
Sbjct: 23 RIGILGGTFDPIHDGHLALARRFADVLDLTELVLIPAG-QPWQKADVSAA-EHRLAMTRA 80
Query: 80 --SLIKNPRIRITAFEAYLNH---TETFHTILQVK-KHNKSVNFVWIMGADNIKSFHQWH 133
+ + P + + + H T T T+ + + + + ++GAD + W
Sbjct: 81 AAASLVLPGVTVRVATDEIEHAGPTYTVDTLARWRERIGPDASLALLIGADQLVRLDTWR 140
Query: 134 HWKRIVTTVPIAIIDR--FDVTFNYISSPMAKTFEYARLDESLSHILCTTSPPSWLFIHD 191
W+R+ + R FD+ S +A + D + + T P L I
Sbjct: 141 DWRRLFDYAHLCAATRPGFDLG--AASPAVAAEIAARQADADV--LQAT--PAGHLLIDT 194
Query: 192 RHHI-ISSTAIRKKIIEQDNTR 212
+S+T IR + R
Sbjct: 195 TLAFDLSATDIRAHLRACIARR 216
>gnl|CDD|161722 TIGR00125, cyt_tran_rel, cytidyltransferase-related domain.
Protein families that contain at least one copy of this
domain include citrate lyase ligase,
pantoate-beta-alanine ligase, glycerol-3-phosphate
cytidyltransferase, ADP-heptose synthase,
phosphocholine cytidylyltransferase, lipopolysaccharide
core biosynthesis protein KdtB, the bifunctional
protein NadR, and a number whose function is unknown.
Many of these proteins are known to use CTP or ATP and
release pyrophosphate.
Length = 66
Score = 39.2 bits (92), Expect = 9e-04
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 22 IGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSS--SLEKRISLSQ 79
+F G F+P H GH+++ + A + D+L + V SLE+R+ + +
Sbjct: 1 RVIFVGTFDPFHLGHLDLLERAKEL--FDELIVGVGSDQFVNPLKGEPVFSLEERLEMLK 58
Query: 80 SLIK 83
+L
Sbjct: 59 ALKY 62
>gnl|CDD|184424 PRK13964, coaD, phosphopantetheine adenylyltransferase;
Provisional.
Length = 140
Score = 38.6 bits (90), Expect = 0.001
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQ 79
MKI ++ G+F+P H GH+ I + A+K D+++ +++ N K + +S L+ R +
Sbjct: 1 MKIAIYPGSFDPFHKGHLNILKKALKL--FDKVYVVVS-INPDK--SNASDLDSRFKNVK 55
Query: 80 SLIKNPRIRITAFEAYLNHTETFHTILQVKKHNKSVNFVWIMGADNIKSF 129
+ +K+ E +N + I KK NF+ I A N F
Sbjct: 56 NKLKD----FKNVEVLINENKLTAEI--AKKLG--ANFL-IRSARNNIDF 96
>gnl|CDD|162396 TIGR01510, coaD_prev_kdtB, pantetheine-phosphate
adenylyltransferase, bacterial. This model describes
pantetheine-phosphate adenylyltransferase, the
penultimate enzyme of coenzyme A (CoA) biosynthesis in
bacteria. It does not show any strong homology to
eukaryotic enzymes of coenzyme A biosynthesis. This
protein was previously designated KdtB and postulated
(because of cytidyltransferase homology and proximity
to kdtA) to be an enzyme of LPS biosynthesis, a
cytidyltransferase for 3-deoxy-D-manno-2-octulosonic
acid. However, no activity toward that compound was
found with either CTP or ATP. The phylogenetic
distribution of this enzyme is more consistent with
coenzyme A biosynthesis than with LPS biosynthesis.
Length = 155
Score = 36.1 bits (84), Expect = 0.006
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 22 IGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQSL 81
I L+ G+F+P +GH++I + A D++ + N K SLE+R+ L +
Sbjct: 1 IALYPGSFDPVTNGHLDIIKRAAAL--FDEVIVAVA-KNPSKKPLF--SLEERVELIKDA 55
Query: 82 IKN-PRIRITAFEAYLNH 98
K+ P +R+ F+ L
Sbjct: 56 TKHLPNVRVDVFDGLLVD 73
>gnl|CDD|178911 PRK00168, coaD, phosphopantetheine adenylyltransferase;
Provisional.
Length = 159
Score = 35.8 bits (84), Expect = 0.008
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 10/77 (12%)
Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNL-DQLWWIITPF-NSVKNYNLSSSLEKRISL 77
MKI ++ G+F+P +GH++I + A L D++ I+ N K SLE+R+ L
Sbjct: 1 MKIAIYPGSFDPITNGHLDIIERA---SRLFDEV--IVAVAINPSKKPLF--SLEERVEL 53
Query: 78 -SQSLIKNPRIRITAFE 93
++ P + + +F+
Sbjct: 54 IREATAHLPNVEVVSFD 70
>gnl|CDD|180046 PRK05379, PRK05379, bifunctional nicotinamide mononucleotide
adenylyltransferase/ADP-ribose pyrophosphatase;
Provisional.
Length = 340
Score = 31.5 bits (72), Expect = 0.16
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 22 IGLFGGNFNPPHHGHIEIAQIAIKK 46
+F G F P H+GH+ + + A+ +
Sbjct: 8 YLVFIGRFQPFHNGHLAVIREALSR 32
>gnl|CDD|162400 TIGR01526, nadR_NMN_Atrans, nicotinamide-nucleotide
adenylyltransferase, NadR type. E. coli NadR has also
been found to regulate the import of its substrate,
nicotinamide ribonucleotide, but it is not known if the
other members of this model share that activity.
Length = 325
Score = 31.4 bits (71), Expect = 0.21
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQ 79
IG+ G F P H GHI + A K +D+L ++ ++ R+ +
Sbjct: 1 KTIGVVFGKFYPLHTGHIYLIYEAFSK--VDELHIVVGSLFYDSKAKRPPPVQDRLRWLR 58
Query: 80 SLIKNPR--IRITAF 92
+ K + I I
Sbjct: 59 EIFKYQKNQIFIHHL 73
>gnl|CDD|181576 PRK08887, PRK08887, nicotinic acid mononucleotide
adenylyltransferase; Provisional.
Length = 174
Score = 29.7 bits (67), Expect = 0.56
Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 12/127 (9%)
Query: 20 MKIGLFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNSVKNYNLSSSLEKRISLSQ 79
KI +FG FNPP GH + I+ L+ L ++ + E R L
Sbjct: 2 KKIAVFGSAFNPPSLGHKSV----IESLSHFDLVLLVPSIAHAWGKTM-LDYETRCQLVD 56
Query: 80 SLIKN---PRIRITAFEAYLNHTE----TFHTILQVKKHNKSVNFVWIMGADNIKSFHQW 132
+ I++ ++ + E L + T+ + ++++ + +++G DN F ++
Sbjct: 57 AFIQDLGLSNVQRSDIEQELYAPDESVTTYALLTRLQELYPEADLTFVIGPDNFLKFAKF 116
Query: 133 HHWKRIV 139
+ I
Sbjct: 117 YKADEIT 123
>gnl|CDD|179235 PRK01153, PRK01153, nicotinamide-nucleotide adenylyltransferase;
Provisional.
Length = 174
Score = 28.7 bits (65), Expect = 1.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 23 GLFGGNFNPPHHGHIEI 39
LF G F P H GH+E+
Sbjct: 3 ALFIGRFQPFHKGHLEV 19
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2.
Length = 520
Score = 27.5 bits (61), Expect = 2.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 67 LSSSLEKRISLSQSLIKNPRIRI 89
LS R++L+Q LIK PRI I
Sbjct: 428 LSEGERHRVALAQVLIKEPRIVI 450
>gnl|CDD|114733 pfam06027, DUF914, Eukaryotic protein of unknown function (DUF914).
This family consists of several hypothetical proteins
of unknown function. Some of the sequences in this
family are annotated as being putative membrane
proteins.
Length = 335
Score = 27.4 bits (61), Expect = 3.0
Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 27/128 (21%)
Query: 75 ISLSQSLIKNPRIRITAFEAYLNHTETF--HTILQVKKHNKSVNFVWIMGADNIKSFHQW 132
+ S + I + +LN+ +T + + G N+ +
Sbjct: 28 TGFTSSYLARKGINAPTSQTFLNYVLLALVYTGILAYR----------RGEKNLLVIIKR 77
Query: 133 HHWKRIVTTVPIAIIDRFDVTFNYISSPMAKTFEYARLDESLSHILCTTSPP----SWLF 188
WK ++ DV NY+ + K ++Y L S+ + C P SW F
Sbjct: 78 KWWKYF-------LLALVDVEANYL---VVKAYQYTSL-TSVQLLDCWAIPCVLVLSWFF 126
Query: 189 IHDRHHII 196
+ R+ ++
Sbjct: 127 LKTRYRLM 134
>gnl|CDD|162833 TIGR02390, RNA_pol_rpoA1, DNA-directed RNA polymerase subunit A'.
This family consists of the archaeal A' subunit of the
DNA-directed RNA polymerase. The example from
Methanocaldococcus jannaschii contains an intein.
Length = 868
Score = 27.0 bits (60), Expect = 3.7
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 12 RMPKVEPGMKIGLFGGNFN--PPHHGHIEIA 40
R+ +EPG++ GG P H GHIE+A
Sbjct: 46 RLGVIEPGLRCKTCGGKVGECPGHFGHIELA 76
>gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion.
Length = 694
Score = 27.0 bits (60), Expect = 3.7
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 66 NLSSSLEKRISLSQSLIKNPRIRI 89
NLS +RI+++++L+ NPRI I
Sbjct: 593 NLSGGQRQRIAIARALVGNPRILI 616
>gnl|CDD|173323 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional.
Length = 335
Score = 26.6 bits (59), Expect = 4.4
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 57 TPFNSVKNYNLSSSLEKR----ISLSQSLIK-NPRIRITAFEAYLNH 98
T F K +L + I L QSL+K NP RI+A EA L H
Sbjct: 268 TEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERISAKEA-LKH 313
>gnl|CDD|173501 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 26.5 bits (58), Expect = 5.9
Identities = 10/23 (43%), Positives = 19/23 (82%)
Query: 67 LSSSLEKRISLSQSLIKNPRIRI 89
LS ++RIS+++++I+NP+I I
Sbjct: 580 LSGGQKQRISIARAIIRNPKILI 602
>gnl|CDD|184388 PRK13909, PRK13909, putative recombination protein RecB;
Provisional.
Length = 910
Score = 26.1 bits (58), Expect = 7.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 161 MAKTFEYARLDESLSHIL 178
+ K F Y RLD +SHIL
Sbjct: 316 IDKDFLYFRLDSKISHIL 333
>gnl|CDD|140329 PTZ00308, PTZ00308, ethanolamine-phosphate cytidylyltransferase;
Provisional.
Length = 353
Score = 25.9 bits (57), Expect = 7.4
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 12 RMPKVEPGMKIGLFGGNFNPPHHGHIEIAQIA 43
R PK PG +I G+F+ H GHI + Q A
Sbjct: 186 RSPK--PGDRIVYVDGSFDLFHIGHIRVLQKA 215
>gnl|CDD|184227 PRK13670, PRK13670, hypothetical protein; Provisional.
Length = 388
Score = 25.9 bits (58), Expect = 8.1
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Query: 190 HD---RHHIISSTAIRKKIIEQD 209
HD S+TAIRK ++E+D
Sbjct: 192 HDEELDGEFASATAIRKALLEKD 214
>gnl|CDD|173106 PRK14643, PRK14643, hypothetical protein; Provisional.
Length = 164
Score = 26.0 bits (57), Expect = 8.8
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 19/75 (25%)
Query: 68 SSSLEKRISLSQSLIK-----------NPRIRITAFEAYL----NHTETFHTILQVKKHN 112
SS +EK+I + L+K N ++ FE Y+ +T TF +K
Sbjct: 86 SSGIEKQIRSQEELVKALNQWVYVQLNNEIKKVKEFEGYVTKYNVNTNTFRFTFFIKGQK 145
Query: 113 KSVNFVWIMGADNIK 127
K ++ + + IK
Sbjct: 146 KKLDVKY----EQIK 156
>gnl|CDD|184329 PRK13793, PRK13793, nicotinamide-nucleotide adenylyltransferase;
Provisional.
Length = 196
Score = 25.7 bits (56), Expect = 9.0
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Query: 24 LFGGNFNPPHHGHIEIAQIAIKKLNLDQLWWIITPFNS------VKNYNLSSSLEKRISL 77
+F G F P H H++ +IA L Q ++I S +KN L+ E+ I
Sbjct: 8 VFIGRFQPFHLAHMQTIEIA-----LQQSRYVILALGSAQMERNIKNPFLAIEREQMILS 62
Query: 78 SQSLIKNPRIR 88
+ SL + RIR
Sbjct: 63 NFSLDEQKRIR 73
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.323 0.135 0.419
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,537,484
Number of extensions: 211343
Number of successful extensions: 451
Number of sequences better than 10.0: 1
Number of HSP's gapped: 445
Number of HSP's successfully gapped: 29
Length of query: 216
Length of database: 5,994,473
Length adjustment: 89
Effective length of query: 127
Effective length of database: 4,071,361
Effective search space: 517062847
Effective search space used: 517062847
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.1 bits)