Query gi|254780650|ref|YP_003065063.1| hypothetical protein CLIBASIA_02685 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 170
No_of_seqs 77 out of 79
Neff 4.2
Searched_HMMs 39220
Date Sun May 29 20:43:05 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780650.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5317 Uncharacterized protei 100.0 0 0 431.0 18.7 169 1-169 4-174 (175)
2 pfam07323 DUF1465 Protein of u 100.0 0 0 417.4 18.0 156 9-167 1-156 (156)
3 COG1343 CRISPR-associated prot 34.8 9.3 0.00024 18.7 -0.4 23 78-100 30-52 (89)
4 pfam05354 Phage_attach Phage H 32.3 26 0.00067 16.1 1.6 17 20-36 3-19 (117)
5 COG5474 Uncharacterized conser 30.8 27 0.00069 16.0 1.5 62 60-129 62-123 (159)
6 COG3937 Uncharacterized conser 28.3 47 0.0012 14.7 2.9 47 77-125 29-75 (108)
7 cd04755 Commd7 COMM_Domain con 26.3 51 0.0013 14.5 2.4 69 71-143 53-122 (180)
8 KOG0137 consensus 25.9 46 0.0012 14.7 1.9 38 30-67 335-381 (634)
9 PRK09458 pspB phage shock prot 25.5 53 0.0013 14.4 4.2 27 117-143 41-67 (75)
10 pfam06667 PspB Phage shock pro 25.3 53 0.0014 14.4 4.2 27 117-143 41-67 (75)
11 pfam06627 DUF1153 Protein of u 24.4 42 0.0011 15.0 1.5 26 78-104 41-66 (90)
12 PRK07580 Mg-protoporphyrin IX 22.1 50 0.0013 14.5 1.5 41 33-77 11-57 (230)
13 pfam00992 Troponin Troponin. T 21.3 64 0.0016 13.9 3.0 25 120-144 44-68 (117)
14 cd05753 Ig2_FcgammaR_like Seco 20.4 9.9 0.00025 18.6 -2.4 13 75-87 1-16 (83)
No 1
>COG5317 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=0 Score=430.97 Aligned_cols=169 Identities=49% Similarity=0.732 Sum_probs=162.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 96104337999999852599999999999999999998538983123116999999999999999999999999999999
Q gi|254780650|r 1 MSNRVSGSISCLNRRLFSMRLKVLYKESIALVEETSCYFDREGHLLSKTLPRAISKLYTSESVLLTTRLMQMVSWLFLQR 80 (170)
Q Consensus 1 ~~~~~~~~~~~~~r~~~s~~F~~Ly~EgM~LveEtaaYlDg~GR~~ak~L~r~~~l~YA~ESMrlTTRLMQiaSWLLlqR 80 (170)
||..++++|||++|+++|++|++||.|||+||||||+||||.||.++|.|||.+++.||+|||||||||||||||||+||
T Consensus 4 ~s~~~~n~vs~a~r~a~S~~Fk~ly~eGM~lVEetAsYLDG~GR~~akvLsR~Aa~lYAaESMRLTTRLMQvASWLLlQR 83 (175)
T COG5317 4 MSEFALNTVSLAERAAFSESFKPLYAEGMGLVEETASYLDGAGRTEAKVLSRMAATLYAAESMRLTTRLMQVASWLLLQR 83 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 31300347889999999876159999888899999988358862777877889999999999899999999999999999
Q ss_pred HHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCCHHH
Q ss_conf 9763899989974234422545578764585154223899999999999999999999983246621--03658894799
Q gi|254780650|r 81 ALEDGNMTLEQVMSEKEKIKFDYSGLDSTVPGWTELPCFFKNLVERSSQLQRRIVLLDQEIYRADFD--EISRGPNHVQT 158 (170)
Q Consensus 81 Av~eGEMs~~qa~~ek~rv~l~~~~~~~~~~~~~~LP~~lr~Li~rS~~L~~RV~rLD~~~~~~~~~--~~~~~~nPv~~ 158 (170)
||++||||++|+++||+||++++++.+.+.|+|++||+.|++||+||+|||+||+|||++||++... .++.+.|||++
T Consensus 84 Av~~GEMtr~qv~sEk~kvrldt~~~~~~apgwneLP~~f~dLveRSlRLq~rVr~lDreiY~~~~a~~~~P~~~n~V~~ 163 (175)
T COG5317 84 AVNSGEMTREQVLSEKSKVRLDTPSADRDAPGWNELPESFRDLVERSLRLQARVRRLDREIYGESEATDEVPRGRNPVQA 163 (175)
T ss_pred HHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHH
T ss_conf 98748888789977888873047765557855545419999999999999999999789884344001028899863899
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999998522
Q gi|254780650|r 159 QIKLLEACFEN 169 (170)
Q Consensus 159 ql~~L~~AF~~ 169 (170)
||++|++||+.
T Consensus 164 Qi~lL~tAfg~ 174 (175)
T COG5317 164 QIDLLTTAFGR 174 (175)
T ss_pred HHHHHHHHHCC
T ss_conf 99999998646
No 2
>pfam07323 DUF1465 Protein of unknown function (DUF1465). This family consists of several hypothetical bacterial proteins of around 180 residues in length. The function of this family is unknown.
Probab=100.00 E-value=0 Score=417.42 Aligned_cols=156 Identities=40% Similarity=0.635 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999985259999999999999999999853898312311699999999999999999999999999999997638999
Q gi|254780650|r 9 ISCLNRRLFSMRLKVLYKESIALVEETSCYFDREGHLLSKTLPRAISKLYTSESVLLTTRLMQMVSWLFLQRALEDGNMT 88 (170)
Q Consensus 9 ~~~~~r~~~s~~F~~Ly~EgM~LveEtaaYlDg~GR~~ak~L~r~~~l~YA~ESMrlTTRLMQiaSWLLlqRAv~eGEMs 88 (170)
|+|++++++|++|++||+|||+||||||+||||+||.++|.|++.++++||||||||||||||||||||+||||++||||
T Consensus 1 v~~~e~~~~s~~F~~ly~EgM~LveEtaaYlDg~Gr~~~k~L~~~~~l~ya~EsmrlTTRLMqvaSWLL~qRAv~eGEms 80 (156)
T pfam07323 1 VQLAERFAFSRAFERLYREGMLLVEETAAYLDGEGRDAAKALSREASLAYAAESMRLTTRLMQVASWLLLQRAVREGEMS 80 (156)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 96057654468889999999999999999875887376640699999999999999999999999999999999858999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 8997423442254557876458515422389999999999999999999998324662103658894799999999985
Q gi|254780650|r 89 LEQVMSEKEKIKFDYSGLDSTVPGWTELPCFFKNLVERSSQLQRRIVLLDQEIYRADFDEISRGPNHVQTQIKLLEACF 167 (170)
Q Consensus 89 ~~qa~~ek~rv~l~~~~~~~~~~~~~~LP~~lr~Li~rS~~L~~RV~rLD~~~~~~~~~~~~~~~nPv~~ql~~L~~AF 167 (170)
++||++||+||++++++ +.++++|++||+.||+||+||++||+||+|||+.||.+.. ....+|||++|+++|++||
T Consensus 81 ~~qa~~ek~rv~~~~~~-~~~~~~~~~LP~~lr~Li~rS~rL~~RV~rLD~~~~~~~~--~~~~~nPv~~ql~~L~~AF 156 (156)
T pfam07323 81 REQAAREKYRVRLDTPS-PPDPAGWAELPEALRDLIARSERLYARVARLDEELYGDAA--AVAEDNPVSEQLARLKAAF 156 (156)
T ss_pred HHHHHHHHCCCCCCCCC-CCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCHHHHHHHHHHHC
T ss_conf 99986165035777789-9882124237799999999999999999999877415776--5778998899999999729
No 3
>COG1343 CRISPR-associated protein Cas2 [Defense mechanisms]
Probab=34.79 E-value=9.3 Score=18.71 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=18.4
Q ss_pred HHHHHHCCCCCHHHHHHHHHHCC
Q ss_conf 99997638999899742344225
Q gi|254780650|r 78 LQRALEDGNMTLEQVMSEKEKIK 100 (170)
Q Consensus 78 lqRAv~eGEMs~~qa~~ek~rv~ 100 (170)
+|..|+|||+|+.+..+=|.++.
T Consensus 30 VQnSvFeg~l~~~~~~~l~~~~~ 52 (89)
T COG1343 30 VQNSVFEGELTPADLEKLKRRLK 52 (89)
T ss_pred HEEEEEEEECCHHHHHHHHHHHH
T ss_conf 22104678659999999999998
No 4
>pfam05354 Phage_attach Phage Head-Tail Attachment. The phage head-tail attachment protein is required for the joining of phage heads and tails at the last step of morphogenesis.
Probab=32.33 E-value=26 Score=16.12 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999
Q gi|254780650|r 20 RLKVLYKESIALVEETS 36 (170)
Q Consensus 20 ~F~~Ly~EgM~LveEta 36 (170)
.|+.||..+|+.++++-
T Consensus 3 dfdNlFD~Ama~aD~aI 19 (117)
T pfam05354 3 DFDNLFDAALAGADEAI 19 (117)
T ss_pred CHHHHHHHHHHHHHHHH
T ss_conf 20307899885125789
No 5
>COG5474 Uncharacterized conserved protein [Function unknown]
Probab=30.82 E-value=27 Score=16.05 Aligned_cols=62 Identities=24% Similarity=0.160 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHH
Q ss_conf 9999999999999999999999763899989974234422545578764585154223899999999999
Q gi|254780650|r 60 SESVLLTTRLMQMVSWLFLQRALEDGNMTLEQVMSEKEKIKFDYSGLDSTVPGWTELPCFFKNLVERSSQ 129 (170)
Q Consensus 60 ~ESMrlTTRLMQiaSWLLlqRAv~eGEMs~~qa~~ek~rv~l~~~~~~~~~~~~~~LP~~lr~Li~rS~~ 129 (170)
-|--+---||=|.--|+-.-=-|..|||++.-|+ +..+. -...+|.+.+|+++...|-.|.-
T Consensus 62 PEvRlWF~rLd~~yPWfp~lLDw~Age~~ry~aM-----lvph~---fs~~egiq~npeal~~fvm~~vf 123 (159)
T COG5474 62 PEVRLWFKRLDQGYPWFPYLLDWGAGEMSRYIAM-----LVPHN---FSAKEGIQKNPEALKSFVMSSVF 123 (159)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHH-----HCCCC---CCHHHCCCCCHHHHHHHHHHHHH
T ss_conf 6999999998327872277753077600003565-----25411---13554311281676776656788
No 6
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=28.30 E-value=47 Score=14.67 Aligned_cols=47 Identities=6% Similarity=0.087 Sum_probs=22.6
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHH
Q ss_conf 9999976389998997423442254557876458515422389999999
Q gi|254780650|r 77 FLQRALEDGNMTLEQVMSEKEKIKFDYSGLDSTVPGWTELPCFFKNLVE 125 (170)
Q Consensus 77 LlqRAv~eGEMs~~qa~~ek~rv~l~~~~~~~~~~~~~~LP~~lr~Li~ 125 (170)
|+--=|..|+|+.+++-+=- =.+-..........-+..|..+++.+.
T Consensus 29 lvDelVkkGeln~eEak~~v--ddl~~q~k~~~~e~e~K~~r~i~~ml~ 75 (108)
T COG3937 29 LVDELVKKGELNAEEAKRFV--DDLLRQAKEAQGELEEKIPRKIEEMLS 75 (108)
T ss_pred HHHHHHHCCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999982787899999999--999999898760277763689999984
No 7
>cd04755 Commd7 COMM_Domain containing protein 7. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=26.33 E-value=51 Score=14.47 Aligned_cols=69 Identities=13% Similarity=0.169 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHH-CCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999997638999899742344225455787645851542-2389999999999999999999998324
Q gi|254780650|r 71 QMVSWLFLQRALEDGNMTLEQVMSEKEKIKFDYSGLDSTVPGWTE-LPCFFKNLVERSSQLQRRIVLLDQEIYR 143 (170)
Q Consensus 71 QiaSWLLlqRAv~eGEMs~~qa~~ek~rv~l~~~~~~~~~~~~~~-LP~~lr~Li~rS~~L~~RV~rLD~~~~~ 143 (170)
=|-|||++-+...--.++++|..++--.+++++.-...-...|.+ ++.--+.++..|.++. +|..+-|+
T Consensus 53 iikslll~~~~A~K~Nlt~eql~~DL~~LGL~eEkAs~l~~~wk~~~~~Lsr~~~~qTL~in----qLvdm~Wk 122 (180)
T cd04755 53 IVKSILLVPNGALKRNLTAEQLREDLIQLGLSEEKASYFSEQWKQHYSTLSRSAVGQTLMVN----QLVDMEWK 122 (180)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH----HHCCCEEE
T ss_conf 99999999999988389999999999983996889999999999876886199985500154----41154035
No 8
>KOG0137 consensus
Probab=25.93 E-value=46 Score=14.73 Aligned_cols=38 Identities=26% Similarity=0.461 Sum_probs=26.2
Q ss_pred HHHHHHHHHHCCCCC---------HHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 999999998538983---------12311699999999999999999
Q gi|254780650|r 30 ALVEETSCYFDREGH---------LLSKTLPRAISKLYTSESVLLTT 67 (170)
Q Consensus 30 ~LveEtaaYlDg~GR---------~~ak~L~r~~~l~YA~ESMrlTT 67 (170)
-+++|++-|--+.-. .-...+.+++...|+.|||...+
T Consensus 335 r~I~~~~d~~~~rtQ~g~~L~~~~l~q~k~~~m~~~~Ya~ESm~yl~ 381 (634)
T KOG0137 335 RIIEEAADYATNRTQFGKKLHDFGLIQEKVAEMASKVYATESMLYLL 381 (634)
T ss_pred HHHHHHHHHHHCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999860551048151110268999999999999999999998
No 9
>PRK09458 pspB phage shock protein B; Provisional
Probab=25.47 E-value=53 Score=14.37 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 389999999999999999999998324
Q gi|254780650|r 117 PCFFKNLVERSSQLQRRIVLLDQEIYR 143 (170)
Q Consensus 117 P~~lr~Li~rS~~L~~RV~rLD~~~~~ 143 (170)
-..|.+|.+.+.+|++||.-|++.+-.
T Consensus 41 ~~~L~~L~~~A~~m~eRI~tLE~ILDa 67 (75)
T PRK09458 41 QQRLAQLTEKAEKMRERIQTLEAILDA 67 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999999999999726
No 10
>pfam06667 PspB Phage shock protein B. This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one.
Probab=25.33 E-value=53 Score=14.36 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 389999999999999999999998324
Q gi|254780650|r 117 PCFFKNLVERSSQLQRRIVLLDQEIYR 143 (170)
Q Consensus 117 P~~lr~Li~rS~~L~~RV~rLD~~~~~ 143 (170)
-..|.+|.+.+.+|++||.-|++.+-.
T Consensus 41 ~~~L~~L~~~A~rm~~RI~tLE~ILDa 67 (75)
T pfam06667 41 EQLLEELLETAEKLQERIQTLERILDA 67 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999999999999736
No 11
>pfam06627 DUF1153 Protein of unknown function (DUF1153). This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=24.37 E-value=42 Score=14.96 Aligned_cols=26 Identities=8% Similarity=0.118 Sum_probs=21.1
Q ss_pred HHHHHHCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 999976389998997423442254557
Q gi|254780650|r 78 LQRALEDGNMTLEQVMSEKEKIKFDYS 104 (170)
Q Consensus 78 lqRAv~eGEMs~~qa~~ek~rv~l~~~ 104 (170)
+-+||.-|=||.++|++ .|.++..++
T Consensus 41 VV~aV~~GLis~~EA~~-rY~LS~EEf 66 (90)
T pfam06627 41 VVAAVRGGLLSRDEACE-RYGLSEEEF 66 (90)
T ss_pred HHHHHHHCCCCHHHHHH-HHCCCHHHH
T ss_conf 99999817778999999-967889999
No 12
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=22.07 E-value=50 Score=14.53 Aligned_cols=41 Identities=24% Similarity=0.284 Sum_probs=28.2
Q ss_pred HHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHH------HHHHHHHHH
Q ss_conf 999998538983123116999999999999999999------999999999
Q gi|254780650|r 33 EETSCYFDREGHLLSKTLPRAISKLYTSESVLLTTR------LMQMVSWLF 77 (170)
Q Consensus 33 eEtaaYlDg~GR~~ak~L~r~~~l~YA~ESMrlTTR------LMQiaSWLL 77 (170)
++...|||+.|-+.=+.|....-+ -..|.|.| .-.+.+||-
T Consensus 11 ~~v~~YFd~ta~~~W~rltsd~pV----s~vr~tVR~Gr~~mr~~~l~wl~ 57 (230)
T PRK07580 11 SEVRTYFNGTGFDRWARIYSDAPV----SKVRATVRAGHQRMRDTVLSWLP 57 (230)
T ss_pred HHHHHHHCCHHHHHHHHHHCCCCC----HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999998464789999997088972----59999999769999999999731
No 13
>pfam00992 Troponin Troponin. Troponin (Tn) contains three subunits, Ca2+ binding (TnC), inhibitory (TnI), and tropomyosin binding (TnT). this Pfam contains members of the TnT subunit. Troponin is a complex of three proteins, Ca2+ binding (TnC), inhibitory (TnI), and tropomyosin binding (TnT). The troponin complex regulates Ca++ induced muscle contraction. This family includes troponin T and troponin I. Troponin I binds to actin and troponin T binds to tropomyosin.
Probab=21.34 E-value=64 Score=13.89 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999999999999983246
Q gi|254780650|r 120 FKNLVERSSQLQRRIVLLDQEIYRA 144 (170)
Q Consensus 120 lr~Li~rS~~L~~RV~rLD~~~~~~ 144 (170)
..+|-+=...+|+||.++|..-|.-
T Consensus 44 ~~eLq~lck~l~~ri~~~eEEryd~ 68 (117)
T pfam00992 44 RAELQELCKKLHARIDRLDEERYDI 68 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 9999999999999999998875019
No 14
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=20.45 E-value=9.9 Score=18.56 Aligned_cols=13 Identities=38% Similarity=0.787 Sum_probs=8.9
Q ss_pred HHHHHH---HHHCCCC
Q ss_conf 999999---9763899
Q gi|254780650|r 75 WLFLQR---ALEDGNM 87 (170)
Q Consensus 75 WLLlqR---Av~eGEM 87 (170)
||++|= +|.|||-
T Consensus 1 WLiLQap~~~vfEGD~ 16 (83)
T cd05753 1 WLLLQVPSRVVFEGEP 16 (83)
T ss_pred CEEEECCCCCEECCCC
T ss_conf 9187578221661995
Done!