Query         gi|254780650|ref|YP_003065063.1| hypothetical protein CLIBASIA_02685 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 170
No_of_seqs    77 out of 79
Neff          4.2 
Searched_HMMs 23785
Date          Tue May 31 17:28:06 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780650.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3ctw_B RCDA; protein binding;  100.0       0       0  409.1   7.8  159    6-169    11-169 (169)
  2 1ytz_I Troponin I; muscle, THI  73.3     4.5 0.00019   19.3   4.6   62   75-143    19-80  (182)
  3 1j1d_C Troponin I, TNI; THIN f  64.8     3.6 0.00015   19.9   2.6   65   74-144    20-84  (133)
  4 2xf7_A GP23.1; viral protein;   60.5     5.8 0.00025   18.6   3.1   19   76-94     22-40  (51)
  5 1j1e_C Troponin I, TNI; THIN f  59.0       5 0.00021   19.0   2.5   64   75-144    21-84  (180)
  6 2akf_A Coronin-1A; coiled coil  28.1      29  0.0012   14.7   3.7   27  115-141     3-29  (32)
  7 2jrt_A Uncharacterized protein  26.4      23 0.00095   15.3   1.5   26   78-104    41-66  (95)
  8 2pnv_A Small conductance calci  25.6      32  0.0013   14.4   3.3   24  118-141     9-32  (43)
  9 2kfd_A PRE-mRNA-processing pro  18.4      26  0.0011   14.9   0.5   19   74-92     17-36  (69)
 10 1j1d_B Troponin T, TNT; THIN f  15.7      20 0.00085   15.5  -0.6   60   79-143     8-67  (106)

No 1  
>3ctw_B RCDA; protein binding; 2.90A {Caulobacter crescentus}
Probab=100.00  E-value=0  Score=409.14  Aligned_cols=159  Identities=34%  Similarity=0.479  Sum_probs=148.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             33799999985259999999999999999999853898312311699999999999999999999999999999997638
Q gi|254780650|r    6 SGSISCLNRRLFSMRLKVLYKESIALVEETSCYFDREGHLLSKTLPRAISKLYTSESVLLTTRLMQMVSWLFLQRALEDG   85 (170)
Q Consensus         6 ~~~~~~~~r~~~s~~F~~Ly~EgM~LveEtaaYlDg~GR~~ak~L~r~~~l~YA~ESMrlTTRLMQiaSWLLlqRAv~eG   85 (170)
                      ..++.+...+++|++|++||+|||+|||||++||||+||.++|.|++.++++||||||||||||||||||||+||||++|
T Consensus        11 ~~~~~~~~~fa~s~~F~~Ly~EgM~LveEtaaYlDg~Gr~~ak~L~r~~~l~yA~ESMrlTTRLMQvaSWLLlqRAv~eG   90 (169)
T 3ctw_B           11 PWRAGVIQDFARSELFDRTFEEGMQLVEETAAYLDGAGRHDSKVLSRNAALGYATESMRLTTRLMQVASWLLVQRAVREG   90 (169)
T ss_dssp             ------CCCCCCCTTHHHHHHHHHHHHHHHHHHHTTHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             25888988611128889999999999999999874898054310689999999999999999999999999999999848


Q ss_pred             CCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99989974234422545578764585154223899999999999999999999983246621036588947999999999
Q gi|254780650|r   86 NMTLEQVMSEKEKIKFDYSGLDSTVPGWTELPCFFKNLVERSSQLQRRIVLLDQEIYRADFDEISRGPNHVQTQIKLLEA  165 (170)
Q Consensus        86 EMs~~qa~~ek~rv~l~~~~~~~~~~~~~~LP~~lr~Li~rS~~L~~RV~rLD~~~~~~~~~~~~~~~nPv~~ql~~L~~  165 (170)
                      |||.+|+++||+||+++.+   ..+|+|++||..||+||+||++||+||+|||++||.+.+.  .+++|||.+||++|++
T Consensus        91 EMt~eqa~~ek~rl~~~~~---~~~~~~~~LP~~lr~Li~rS~rL~~RV~rLD~~~~~~~~~--~~~~nPv~~ql~~L~~  165 (169)
T 3ctw_B           91 EMPPEAACAEAYRLAEEAP---ADGPAVEELPFGLMNLLQRSERLYERVRHLDRRMYVESPN--EEAPRPVQNQLDRLTA  165 (169)
T ss_dssp             SSCTTTTSSSCC--------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC--------------------
T ss_pred             CCCHHHHHHHHCCCCCCCC---CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCHHHHHHHHHH
T ss_conf             9898988545224688899---9850465577999999999999999999999985057755--7799979999999999


Q ss_pred             HHHC
Q ss_conf             8522
Q gi|254780650|r  166 CFEN  169 (170)
Q Consensus       166 AF~~  169 (170)
                      ||+.
T Consensus       166 AF~g  169 (169)
T 3ctw_B          166 AFGG  169 (169)
T ss_dssp             ----
T ss_pred             HHCC
T ss_conf             7585


No 2  
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 1yv0_I 1vdi_A 1vdj_A
Probab=73.32  E-value=4.5  Score=19.29  Aligned_cols=62  Identities=24%  Similarity=0.268  Sum_probs=34.3

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999976389998997423442254557876458515422389999999999999999999998324
Q gi|254780650|r   75 WLFLQRALEDGNMTLEQVMSEKEKIKFDYSGLDSTVPGWTELPCFFKNLVERSSQLQRRIVLLDQEIYR  143 (170)
Q Consensus        75 WLLlqRAv~eGEMs~~qa~~ek~rv~l~~~~~~~~~~~~~~LP~~lr~Li~rS~~L~~RV~rLD~~~~~  143 (170)
                      =||+|.|..+.+=..++-..|+.++ +..-|.|.+.++      ...+|-+-...||++|..+|..-|-
T Consensus        19 slml~kA~eeLkkE~e~k~eEK~r~-LaER~ppL~~~g------s~~eLqelckeLh~kI~~lEeEkYD   80 (182)
T 1ytz_I           19 SAMLQLAVTEIEKEAAAKEVEKQNY-LAEHSPPLSLPG------SMQELQELSKKLHAKIDSVDEERYD   80 (182)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCCCCC------SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999-997389999987------7999999999999999999998846


No 3  
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=64.78  E-value=3.6  Score=19.88  Aligned_cols=65  Identities=25%  Similarity=0.288  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99999999763899989974234422545578764585154223899999999999999999999983246
Q gi|254780650|r   74 SWLFLQRALEDGNMTLEQVMSEKEKIKFDYSGLDSTVPGWTELPCFFKNLVERSSQLQRRIVLLDQEIYRA  144 (170)
Q Consensus        74 SWLLlqRAv~eGEMs~~qa~~ek~rv~l~~~~~~~~~~~~~~LP~~lr~Li~rS~~L~~RV~rLD~~~~~~  144 (170)
                      -=||+|.|..+-+...++...||.++ +..-|.|.+.++.+     .-+|-+-...||++|..||.+-|--
T Consensus        20 k~lmlqkA~eeL~~E~e~k~~EK~r~-Laer~~pl~i~gl~-----~~eLqe~~keLh~~I~~lEeEKYDl   84 (133)
T 1j1d_C           20 KTLLLQIAKQELEREAEERRGEKGRA-LSTRAQPLELAGLG-----FAELQDLARQLHARVDKVDEERYDI   84 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTCCCCCTTCC-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999-99608999999989-----9999999999999999999999779


No 4  
>2xf7_A GP23.1; viral protein; 1.61A {Bacillus phage SPP1} PDB: 2xf5_A 2xf6_A
Probab=60.46  E-value=5.8  Score=18.63  Aligned_cols=19  Identities=26%  Similarity=0.396  Sum_probs=16.3

Q ss_pred             HHHHHHHHCCCCCHHHHHH
Q ss_conf             9999997638999899742
Q gi|254780650|r   76 LFLQRALEDGNMTLEQVMS   94 (170)
Q Consensus        76 LLlqRAv~eGEMs~~qa~~   94 (170)
                      -|++-||+.|+++.++|-+
T Consensus        22 ellrvavnagdltqeeadk   40 (51)
T 2xf7_A           22 ELLRVAVNAGDLTQEEADK   40 (51)
T ss_dssp             HHHHHHHHHTSSCHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHH
T ss_conf             9999986235232788887


No 5  
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=58.98  E-value=5  Score=19.04  Aligned_cols=64  Identities=25%  Similarity=0.271  Sum_probs=39.0

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             9999999763899989974234422545578764585154223899999999999999999999983246
Q gi|254780650|r   75 WLFLQRALEDGNMTLEQVMSEKEKIKFDYSGLDSTVPGWTELPCFFKNLVERSSQLQRRIVLLDQEIYRA  144 (170)
Q Consensus        75 WLLlqRAv~eGEMs~~qa~~ek~rv~l~~~~~~~~~~~~~~LP~~lr~Li~rS~~L~~RV~rLD~~~~~~  144 (170)
                      =||+|.|..+-+...++-..|+.++ +..-|.|.+.++.     ...+|-+--..||+||..||.+-|--
T Consensus        21 slmLqkA~eeLkkE~e~k~eEK~r~-LaER~~pl~l~gl-----s~~eLqelckeLh~rI~~lEeEKYDl   84 (180)
T 1j1e_C           21 TLLLQIAKQELEREAEERRGEKGRA-LSTRAQPLELAGL-----GFAELQDLARQLHARVDKVDEERYDI   84 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCCGGGC-----CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999-9970899999998-----99999999999999999998899689


No 6  
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=28.14  E-value=29  Score=14.66  Aligned_cols=27  Identities=26%  Similarity=0.298  Sum_probs=22.5

Q ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             223899999999999999999999983
Q gi|254780650|r  115 ELPCFFKNLVERSSQLQRRIVLLDQEI  141 (170)
Q Consensus       115 ~LP~~lr~Li~rS~~L~~RV~rLD~~~  141 (170)
                      -|.+.+|.|-+--..||.|+-||+..+
T Consensus         3 rleee~r~l~a~vq~lq~rldrleetv   29 (32)
T 2akf_A            3 RLEEDVRNLNAIVQKLQERLDRLEETV   29 (32)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             688999999999999999999999877


No 7  
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=26.36  E-value=23  Score=15.25  Aligned_cols=26  Identities=12%  Similarity=0.162  Sum_probs=21.2

Q ss_pred             HHHHHHCCCCCHHHHHHHHHHCCCCCC
Q ss_conf             999976389998997423442254557
Q gi|254780650|r   78 LQRALEDGNMTLEQVMSEKEKIKFDYS  104 (170)
Q Consensus        78 lqRAv~eGEMs~~qa~~ek~rv~l~~~  104 (170)
                      +-|||+-|=||.++|++ .|.++.+++
T Consensus        41 VV~aV~~GLis~~EA~~-rY~LS~EEf   66 (95)
T 2jrt_A           41 VVKAVIHGLITEREALD-RYSLSEEEF   66 (95)
T ss_dssp             HHHHHHTTSSCHHHHHH-HTTCCHHHH
T ss_pred             HHHHHHHCCCCHHHHHH-HHCCCHHHH
T ss_conf             99999717779999999-968889999


No 8  
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=25.60  E-value=32  Score=14.39  Aligned_cols=24  Identities=33%  Similarity=0.598  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             899999999999999999999983
Q gi|254780650|r  118 CFFKNLVERSSQLQRRIVLLDQEI  141 (170)
Q Consensus       118 ~~lr~Li~rS~~L~~RV~rLD~~~  141 (170)
                      .-.-+|-+||+.|..||.-|+..+
T Consensus         9 dlvSeL~~rsEdlEkri~~LEtkL   32 (43)
T 2pnv_A            9 DMISDLNERSEDFEKRIVTLETKL   32 (43)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999987689999999999899


No 9  
>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae}
Probab=18.44  E-value=26  Score=14.91  Aligned_cols=19  Identities=32%  Similarity=0.522  Sum_probs=15.0

Q ss_pred             HHHHHHHHHH-CCCCCHHHH
Q ss_conf             9999999976-389998997
Q gi|254780650|r   74 SWLFLQRALE-DGNMTLEQV   92 (170)
Q Consensus        74 SWLLlqRAv~-eGEMs~~qa   92 (170)
                      =|||+||-+. .|-|.++-.
T Consensus        17 F~LlL~Rvy~~~~~~kPetW   36 (69)
T 2kfd_A           17 FWLLLQRTYTKTGKPKPSTW   36 (69)
T ss_dssp             HHHHHHHHSCSSSSCCCSSH
T ss_pred             HHHHHHHHHCCCCCCCCHHH
T ss_conf             99999999825899994259


No 10 
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=15.67  E-value=20  Score=15.54  Aligned_cols=60  Identities=18%  Similarity=0.123  Sum_probs=34.1

Q ss_pred             HHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99976389998997423442254557876458515422389999999999999999999998324
Q gi|254780650|r   79 QRALEDGNMTLEQVMSEKEKIKFDYSGLDSTVPGWTELPCFFKNLVERSSQLQRRIVLLDQEIYR  143 (170)
Q Consensus        79 qRAv~eGEMs~~qa~~ek~rv~l~~~~~~~~~~~~~~LP~~lr~Li~rS~~L~~RV~rLD~~~~~  143 (170)
                      +-|..|-..+.+|...|+-+.-+..-+.|.+.++.+  +..   |-+-...||+||..||..-|-
T Consensus         8 ~~a~~E~~k~k~q~e~E~K~~~Laer~~pl~i~~l~--~d~---L~e~~keLh~~I~~lE~EKYD   67 (106)
T 1j1d_B            8 KQAQTERKSGKRQTEREKKKKILAERRKVLAIDHLN--EDQ---LREKAKELWQTIYNLEAEKFD   67 (106)
T ss_dssp             ------------CCHHHHHHHHHHHHHHHHHHTTCC--HHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--HHH---HHHHHHHHHHHHHHHHHHHHH
T ss_conf             999998888899999999999999817999999999--999---999999999999999999945


Done!