Query gi|254780650|ref|YP_003065063.1| hypothetical protein CLIBASIA_02685 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 170 No_of_seqs 77 out of 79 Neff 4.2 Searched_HMMs 23785 Date Tue May 31 17:28:06 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780650.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3ctw_B RCDA; protein binding; 100.0 0 0 409.1 7.8 159 6-169 11-169 (169) 2 1ytz_I Troponin I; muscle, THI 73.3 4.5 0.00019 19.3 4.6 62 75-143 19-80 (182) 3 1j1d_C Troponin I, TNI; THIN f 64.8 3.6 0.00015 19.9 2.6 65 74-144 20-84 (133) 4 2xf7_A GP23.1; viral protein; 60.5 5.8 0.00025 18.6 3.1 19 76-94 22-40 (51) 5 1j1e_C Troponin I, TNI; THIN f 59.0 5 0.00021 19.0 2.5 64 75-144 21-84 (180) 6 2akf_A Coronin-1A; coiled coil 28.1 29 0.0012 14.7 3.7 27 115-141 3-29 (32) 7 2jrt_A Uncharacterized protein 26.4 23 0.00095 15.3 1.5 26 78-104 41-66 (95) 8 2pnv_A Small conductance calci 25.6 32 0.0013 14.4 3.3 24 118-141 9-32 (43) 9 2kfd_A PRE-mRNA-processing pro 18.4 26 0.0011 14.9 0.5 19 74-92 17-36 (69) 10 1j1d_B Troponin T, TNT; THIN f 15.7 20 0.00085 15.5 -0.6 60 79-143 8-67 (106) No 1 >3ctw_B RCDA; protein binding; 2.90A {Caulobacter crescentus} Probab=100.00 E-value=0 Score=409.14 Aligned_cols=159 Identities=34% Similarity=0.479 Sum_probs=148.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 33799999985259999999999999999999853898312311699999999999999999999999999999997638 Q gi|254780650|r 6 SGSISCLNRRLFSMRLKVLYKESIALVEETSCYFDREGHLLSKTLPRAISKLYTSESVLLTTRLMQMVSWLFLQRALEDG 85 (170) Q Consensus 6 ~~~~~~~~r~~~s~~F~~Ly~EgM~LveEtaaYlDg~GR~~ak~L~r~~~l~YA~ESMrlTTRLMQiaSWLLlqRAv~eG 85 (170) ..++.+...+++|++|++||+|||+|||||++||||+||.++|.|++.++++||||||||||||||||||||+||||++| T Consensus 11 ~~~~~~~~~fa~s~~F~~Ly~EgM~LveEtaaYlDg~Gr~~ak~L~r~~~l~yA~ESMrlTTRLMQvaSWLLlqRAv~eG 90 (169) T 3ctw_B 11 PWRAGVIQDFARSELFDRTFEEGMQLVEETAAYLDGAGRHDSKVLSRNAALGYATESMRLTTRLMQVASWLLVQRAVREG 90 (169) T ss_dssp ------CCCCCCCTTHHHHHHHHHHHHHHHHHHHTTHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 25888988611128889999999999999999874898054310689999999999999999999999999999999848 Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 99989974234422545578764585154223899999999999999999999983246621036588947999999999 Q gi|254780650|r 86 NMTLEQVMSEKEKIKFDYSGLDSTVPGWTELPCFFKNLVERSSQLQRRIVLLDQEIYRADFDEISRGPNHVQTQIKLLEA 165 (170) Q Consensus 86 EMs~~qa~~ek~rv~l~~~~~~~~~~~~~~LP~~lr~Li~rS~~L~~RV~rLD~~~~~~~~~~~~~~~nPv~~ql~~L~~ 165 (170) |||.+|+++||+||+++.+ ..+|+|++||..||+||+||++||+||+|||++||.+.+. .+++|||.+||++|++ T Consensus 91 EMt~eqa~~ek~rl~~~~~---~~~~~~~~LP~~lr~Li~rS~rL~~RV~rLD~~~~~~~~~--~~~~nPv~~ql~~L~~ 165 (169) T 3ctw_B 91 EMPPEAACAEAYRLAEEAP---ADGPAVEELPFGLMNLLQRSERLYERVRHLDRRMYVESPN--EEAPRPVQNQLDRLTA 165 (169) T ss_dssp SSCTTTTSSSCC--------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC-------------------- T ss_pred CCCHHHHHHHHCCCCCCCC---CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCHHHHHHHHHH T ss_conf 9898988545224688899---9850465577999999999999999999999985057755--7799979999999999 Q ss_pred HHHC Q ss_conf 8522 Q gi|254780650|r 166 CFEN 169 (170) Q Consensus 166 AF~~ 169 (170) ||+. T Consensus 166 AF~g 169 (169) T 3ctw_B 166 AFGG 169 (169) T ss_dssp ---- T ss_pred HHCC T ss_conf 7585 No 2 >1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 1yv0_I 1vdi_A 1vdj_A Probab=73.32 E-value=4.5 Score=19.29 Aligned_cols=62 Identities=24% Similarity=0.268 Sum_probs=34.3 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999999976389998997423442254557876458515422389999999999999999999998324 Q gi|254780650|r 75 WLFLQRALEDGNMTLEQVMSEKEKIKFDYSGLDSTVPGWTELPCFFKNLVERSSQLQRRIVLLDQEIYR 143 (170) Q Consensus 75 WLLlqRAv~eGEMs~~qa~~ek~rv~l~~~~~~~~~~~~~~LP~~lr~Li~rS~~L~~RV~rLD~~~~~ 143 (170) =||+|.|..+.+=..++-..|+.++ +..-|.|.+.++ ...+|-+-...||++|..+|..-|- T Consensus 19 slml~kA~eeLkkE~e~k~eEK~r~-LaER~ppL~~~g------s~~eLqelckeLh~kI~~lEeEkYD 80 (182) T 1ytz_I 19 SAMLQLAVTEIEKEAAAKEVEKQNY-LAEHSPPLSLPG------SMQELQELSKKLHAKIDSVDEERYD 80 (182) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCCCCC------SHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999-997389999987------7999999999999999999998846 No 3 >1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2 Probab=64.78 E-value=3.6 Score=19.88 Aligned_cols=65 Identities=25% Similarity=0.288 Sum_probs=42.1 Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 99999999763899989974234422545578764585154223899999999999999999999983246 Q gi|254780650|r 74 SWLFLQRALEDGNMTLEQVMSEKEKIKFDYSGLDSTVPGWTELPCFFKNLVERSSQLQRRIVLLDQEIYRA 144 (170) Q Consensus 74 SWLLlqRAv~eGEMs~~qa~~ek~rv~l~~~~~~~~~~~~~~LP~~lr~Li~rS~~L~~RV~rLD~~~~~~ 144 (170) -=||+|.|..+-+...++...||.++ +..-|.|.+.++.+ .-+|-+-...||++|..||.+-|-- T Consensus 20 k~lmlqkA~eeL~~E~e~k~~EK~r~-Laer~~pl~i~gl~-----~~eLqe~~keLh~~I~~lEeEKYDl 84 (133) T 1j1d_C 20 KTLLLQIAKQELEREAEERRGEKGRA-LSTRAQPLELAGLG-----FAELQDLARQLHARVDKVDEERYDI 84 (133) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTCCCCCTTCC-----HHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999-99608999999989-----9999999999999999999999779 No 4 >2xf7_A GP23.1; viral protein; 1.61A {Bacillus phage SPP1} PDB: 2xf5_A 2xf6_A Probab=60.46 E-value=5.8 Score=18.63 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=16.3 Q ss_pred HHHHHHHHCCCCCHHHHHH Q ss_conf 9999997638999899742 Q gi|254780650|r 76 LFLQRALEDGNMTLEQVMS 94 (170) Q Consensus 76 LLlqRAv~eGEMs~~qa~~ 94 (170) -|++-||+.|+++.++|-+ T Consensus 22 ellrvavnagdltqeeadk 40 (51) T 2xf7_A 22 ELLRVAVNAGDLTQEEADK 40 (51) T ss_dssp HHHHHHHHHTSSCHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHH T ss_conf 9999986235232788887 No 5 >1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2 Probab=58.98 E-value=5 Score=19.04 Aligned_cols=64 Identities=25% Similarity=0.271 Sum_probs=39.0 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 9999999763899989974234422545578764585154223899999999999999999999983246 Q gi|254780650|r 75 WLFLQRALEDGNMTLEQVMSEKEKIKFDYSGLDSTVPGWTELPCFFKNLVERSSQLQRRIVLLDQEIYRA 144 (170) Q Consensus 75 WLLlqRAv~eGEMs~~qa~~ek~rv~l~~~~~~~~~~~~~~LP~~lr~Li~rS~~L~~RV~rLD~~~~~~ 144 (170) =||+|.|..+-+...++-..|+.++ +..-|.|.+.++. ...+|-+--..||+||..||.+-|-- T Consensus 21 slmLqkA~eeLkkE~e~k~eEK~r~-LaER~~pl~l~gl-----s~~eLqelckeLh~rI~~lEeEKYDl 84 (180) T 1j1e_C 21 TLLLQIAKQELEREAEERRGEKGRA-LSTRAQPLELAGL-----GFAELQDLARQLHARVDKVDEERYDI 84 (180) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCCGGGC-----CHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999-9970899999998-----99999999999999999998899689 No 6 >2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic} Probab=28.14 E-value=29 Score=14.66 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=22.5 Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 223899999999999999999999983 Q gi|254780650|r 115 ELPCFFKNLVERSSQLQRRIVLLDQEI 141 (170) Q Consensus 115 ~LP~~lr~Li~rS~~L~~RV~rLD~~~ 141 (170) -|.+.+|.|-+--..||.|+-||+..+ T Consensus 3 rleee~r~l~a~vq~lq~rldrleetv 29 (32) T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETV 29 (32) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 688999999999999999999999877 No 7 >2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides} Probab=26.36 E-value=23 Score=15.25 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=21.2 Q ss_pred HHHHHHCCCCCHHHHHHHHHHCCCCCC Q ss_conf 999976389998997423442254557 Q gi|254780650|r 78 LQRALEDGNMTLEQVMSEKEKIKFDYS 104 (170) Q Consensus 78 lqRAv~eGEMs~~qa~~ek~rv~l~~~ 104 (170) +-|||+-|=||.++|++ .|.++.+++ T Consensus 41 VV~aV~~GLis~~EA~~-rY~LS~EEf 66 (95) T 2jrt_A 41 VVKAVIHGLITEREALD-RYSLSEEEF 66 (95) T ss_dssp HHHHHHTTSSCHHHHHH-HTTCCHHHH T ss_pred HHHHHHHCCCCHHHHHH-HHCCCHHHH T ss_conf 99999717779999999-968889999 No 8 >2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus} Probab=25.60 E-value=32 Score=14.39 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=19.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 899999999999999999999983 Q gi|254780650|r 118 CFFKNLVERSSQLQRRIVLLDQEI 141 (170) Q Consensus 118 ~~lr~Li~rS~~L~~RV~rLD~~~ 141 (170) .-.-+|-+||+.|..||.-|+..+ T Consensus 9 dlvSeL~~rsEdlEkri~~LEtkL 32 (43) T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKL 32 (43) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999987689999999999899 No 9 >2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae} Probab=18.44 E-value=26 Score=14.91 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=15.0 Q ss_pred HHHHHHHHHH-CCCCCHHHH Q ss_conf 9999999976-389998997 Q gi|254780650|r 74 SWLFLQRALE-DGNMTLEQV 92 (170) Q Consensus 74 SWLLlqRAv~-eGEMs~~qa 92 (170) =|||+||-+. .|-|.++-. T Consensus 17 F~LlL~Rvy~~~~~~kPetW 36 (69) T 2kfd_A 17 FWLLLQRTYTKTGKPKPSTW 36 (69) T ss_dssp HHHHHHHHSCSSSSCCCSSH T ss_pred HHHHHHHHHCCCCCCCCHHH T ss_conf 99999999825899994259 No 10 >1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B Probab=15.67 E-value=20 Score=15.54 Aligned_cols=60 Identities=18% Similarity=0.123 Sum_probs=34.1 Q ss_pred HHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99976389998997423442254557876458515422389999999999999999999998324 Q gi|254780650|r 79 QRALEDGNMTLEQVMSEKEKIKFDYSGLDSTVPGWTELPCFFKNLVERSSQLQRRIVLLDQEIYR 143 (170) Q Consensus 79 qRAv~eGEMs~~qa~~ek~rv~l~~~~~~~~~~~~~~LP~~lr~Li~rS~~L~~RV~rLD~~~~~ 143 (170) +-|..|-..+.+|...|+-+.-+..-+.|.+.++.+ +.. |-+-...||+||..||..-|- T Consensus 8 ~~a~~E~~k~k~q~e~E~K~~~Laer~~pl~i~~l~--~d~---L~e~~keLh~~I~~lE~EKYD 67 (106) T 1j1d_B 8 KQAQTERKSGKRQTEREKKKKILAERRKVLAIDHLN--EDQ---LREKAKELWQTIYNLEAEKFD 67 (106) T ss_dssp ------------CCHHHHHHHHHHHHHHHHHHTTCC--HHH---HHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--HHH---HHHHHHHHHHHHHHHHHHHHH T ss_conf 999998888899999999999999817999999999--999---999999999999999999945 Done!