Query gi|254780650|ref|YP_003065063.1| hypothetical protein CLIBASIA_02685 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 170
No_of_seqs 77 out of 79
Neff 4.2
Searched_HMMs 13730
Date Wed Jun 1 09:31:16 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780650.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2oa4a1 a.4.12.3 (A:1-93) Unch 24.1 13 0.00096 15.2 1.2 26 78-104 42-67 (93)
2 d1qnta2 c.55.7.1 (A:6-91) O6-a 16.0 27 0.002 13.4 1.4 17 128-144 52-68 (86)
3 d1zhxa1 d.338.1.1 (A:2-434) Ox 13.7 32 0.0023 13.0 1.2 25 73-99 314-338 (433)
4 d1vbka1 c.26.2.6 (A:176-307) H 13.4 26 0.0019 13.5 0.7 29 71-99 17-52 (132)
5 d1vp7a_ a.7.13.1 (A:) Exonucle 13.3 36 0.0026 12.7 2.7 18 49-66 26-43 (68)
6 d1j9ia_ a.6.1.5 (A:) Terminase 11.4 33 0.0024 13.0 0.7 15 69-84 43-57 (68)
7 d1zs4a1 a.35.1.9 (A:4-81) Regu 7.8 51 0.0037 11.8 0.6 31 70-100 8-38 (78)
8 d2i0xa1 d.58.58.1 (A:1-84) Hyp 7.1 15 0.0011 14.9 -2.4 23 78-100 28-50 (84)
9 d2ivya1 d.58.58.1 (A:2-89) Hyp 5.7 16 0.0011 14.8 -3.0 23 78-100 31-53 (88)
10 d2id3a2 a.121.1.1 (A:81-203) P 5.7 74 0.0054 10.9 1.1 22 67-90 53-74 (123)
No 1
>d2oa4a1 a.4.12.3 (A:1-93) Uncharacterized protein SPO1678 {Silicibacter pomeroyi [TaxId: 89184]}
Probab=24.09 E-value=13 Score=15.23 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=19.7
Q ss_pred HHHHHHCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 999976389998997423442254557
Q gi|254780650|r 78 LQRALEDGNMTLEQVMSEKEKIKFDYS 104 (170)
Q Consensus 78 lqRAv~eGEMs~~qa~~ek~rv~l~~~ 104 (170)
+-+||.-|++|.++||+ +|.|...++
T Consensus 42 VV~av~~Gl~S~~EAcr-rY~LS~eEf 67 (93)
T d2oa4a1 42 VVRGVIYGLITLAEAKQ-TYGLSDEEF 67 (93)
T ss_dssp HHHHHHHTTCCHHHHHH-TTCSSHHHH
T ss_pred HHHHHHCCCCCHHHHHH-HHCCCHHHH
T ss_conf 99999838577999998-839999999
No 2
>d1qnta2 c.55.7.1 (A:6-91) O6-alkylguanine-DNA alkyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.98 E-value=27 Score=13.40 Aligned_cols=17 Identities=12% Similarity=0.100 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHCCC
Q ss_conf 99999999999983246
Q gi|254780650|r 128 SQLQRRIVLLDQEIYRA 144 (170)
Q Consensus 128 ~~L~~RV~rLD~~~~~~ 144 (170)
.-|..=+.-|+.+-..+
T Consensus 52 epL~qC~~WL~aYF~~p 68 (86)
T d1qnta2 52 EPLMQCTAWLNAYFHQP 68 (86)
T ss_dssp HHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHCCCH
T ss_conf 05999999999980493
No 3
>d1zhxa1 d.338.1.1 (A:2-434) Oxysterol-binding protein homolog 4, KES1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.73 E-value=32 Score=12.99 Aligned_cols=25 Identities=16% Similarity=0.419 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 999999999763899989974234422
Q gi|254780650|r 73 VSWLFLQRALEDGNMTLEQVMSEKEKI 99 (170)
Q Consensus 73 aSWLLlqRAv~eGEMs~~qa~~ek~rv 99 (170)
-.|--.+||...|+| +.|..||.||
T Consensus 314 ~~wr~d~~ale~Gd~--d~A~~eK~~L 338 (433)
T d1zhxa1 314 KAWYDVAGAIKLGDF--NLIAKTKTEL 338 (433)
T ss_dssp HHTHHHHHHHHHTCH--HHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCH--HHHHHHHHHH
T ss_conf 426788999987799--9999999999
No 4
>d1vbka1 c.26.2.6 (A:176-307) Hypothetical protein PH1313, C-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=13.38 E-value=26 Score=13.48 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHH-------HCCCCCHHHHHHHHHHC
Q ss_conf 999999999997-------63899989974234422
Q gi|254780650|r 71 QMVSWLFLQRAL-------EDGNMTLEQVMSEKEKI 99 (170)
Q Consensus 71 QiaSWLLlqRAv-------~eGEMs~~qa~~ek~rv 99 (170)
-||+||++.|-+ +.|+-+.+.+.+-..++
T Consensus 17 pVAa~lmmkRG~~V~~v~f~~~~~~~ekv~~l~~~L 52 (132)
T d1vbka1 17 ALAIFLMMKRGVEVIPVYIGKDDKNLEKVRSLWNLL 52 (132)
T ss_dssp HHHHHHHHHBTCEEEEEEESCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 999999997798799999718888999999999999
No 5
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=13.29 E-value=36 Score=12.74 Aligned_cols=18 Identities=33% Similarity=0.182 Sum_probs=6.8
Q ss_pred CCCHHHHHHHHHHHHHHH
Q ss_conf 169999999999999999
Q gi|254780650|r 49 TLPRAISKLYTSESVLLT 66 (170)
Q Consensus 49 ~L~r~~~l~YA~ESMrlT 66 (170)
.++.+-++..=.++|+|.
T Consensus 26 ~l~Leesl~~ye~G~~L~ 43 (68)
T d1vp7a_ 26 TLPLEQSLSAYRRGVELA 43 (68)
T ss_dssp CSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
T ss_conf 998999999999999999
No 6
>d1j9ia_ a.6.1.5 (A:) Terminase gpNU1 subunit domain {Bacteriophage lambda [TaxId: 10710]}
Probab=11.44 E-value=33 Score=12.96 Aligned_cols=15 Identities=20% Similarity=0.435 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 9999999999999763
Q gi|254780650|r 69 LMQMVSWLFLQRALED 84 (170)
Q Consensus 69 LMQiaSWLLlqRAv~e 84 (170)
.-+|.+|| .+|++..
T Consensus 43 t~~v~~Wl-~~R~~~~ 57 (68)
T d1j9ia_ 43 SAAVIKWY-AERDAEI 57 (68)
T ss_dssp HHHHHHHH-TTTGGGG
T ss_pred HHHHHHHH-HHHHHHH
T ss_conf 89999999-9988888
No 7
>d1zs4a1 a.35.1.9 (A:4-81) Regulatory protein cII {Bacteriophage lambda [TaxId: 10710]}
Probab=7.81 E-value=51 Score=11.82 Aligned_cols=31 Identities=26% Similarity=0.236 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
Q ss_conf 9999999999997638999899742344225
Q gi|254780650|r 70 MQMVSWLFLQRALEDGNMTLEQVMSEKEKIK 100 (170)
Q Consensus 70 MQiaSWLLlqRAv~eGEMs~~qa~~ek~rv~ 100 (170)
+.|-||||++=|+.--+-...+..-+++.|+
T Consensus 8 ~rIeS~lLnkiA~~Gq~k~A~amGv~esqiS 38 (78)
T d1zs4a1 8 LRIESALLNKIAMLGTEKTAEAVGVDKSQIS 38 (78)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHCCCHHHHH
T ss_conf 9999999999999720468999399899998
No 8
>d2i0xa1 d.58.58.1 (A:1-84) Hypothetical protein PF1117 {Pyrococcus furiosus [TaxId: 2261]}
Probab=7.09 E-value=15 Score=14.90 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=17.7
Q ss_pred HHHHHHCCCCCHHHHHHHHHHCC
Q ss_conf 99997638999899742344225
Q gi|254780650|r 78 LQRALEDGNMTLEQVMSEKEKIK 100 (170)
Q Consensus 78 lqRAv~eGEMs~~qa~~ek~rv~ 100 (170)
+|+.|++|++|..+...=+.++.
T Consensus 28 vQ~SVFe~~l~~~~~~~l~~~l~ 50 (84)
T d2i0xa1 28 VQNSVFEGEVTLAEFERIKEGLK 50 (84)
T ss_dssp EETTEEEEECCHHHHHHHHHHHH
T ss_pred CEEEEEEEEECHHHHHHHHHHHH
T ss_conf 02679999969999999999999
No 9
>d2ivya1 d.58.58.1 (A:2-89) Hypothetical protein SSO1404 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=5.71 E-value=16 Score=14.78 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=17.8
Q ss_pred HHHHHHCCCCCHHHHHHHHHHCC
Q ss_conf 99997638999899742344225
Q gi|254780650|r 78 LQRALEDGNMTLEQVMSEKEKIK 100 (170)
Q Consensus 78 lqRAv~eGEMs~~qa~~ek~rv~ 100 (170)
+|+.|++|++|+.+...=+.+++
T Consensus 31 vQ~SVFeg~l~~~~~~~l~~~l~ 53 (88)
T d2ivya1 31 IQYSVFMGDLNSSRLKDVEAGLK 53 (88)
T ss_dssp EETTEEEEEECHHHHHHHHHHHH
T ss_pred EEEEEEEEEECHHHHHHHHHHHH
T ss_conf 37438999919999999999999
No 10
>d2id3a2 a.121.1.1 (A:81-203) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=5.69 E-value=74 Score=10.92 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 999999999999999763899989
Q gi|254780650|r 67 TRLMQMVSWLFLQRALEDGNMTLE 90 (170)
Q Consensus 67 TRLMQiaSWLLlqRAv~eGEMs~~ 90 (170)
-|--++.. +++||+..||+.++
T Consensus 53 ~r~~~~~~--il~rA~~RGEl~~~ 74 (123)
T d2id3a2 53 VRVDEWAG--CVRDAVARGEVPDG 74 (123)
T ss_dssp HHHHHHHH--HHHHHHHTTSSCTT
T ss_pred HHHHHHHH--HHHHHHHCCCCCCC
T ss_conf 99999999--99999983888987
Done!