RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780650|ref|YP_003065063.1| hypothetical protein
CLIBASIA_02685 [Candidatus Liberibacter asiaticus str. psy62]
         (170 letters)



>gnl|CDD|148751 pfam07323, DUF1465, Protein of unknown function (DUF1465).  This
           family consists of several hypothetical bacterial
           proteins of around 180 residues in length. The function
           of this family is unknown.
          Length = 156

 Score =  132 bits (334), Expect = 5e-32
 Identities = 66/155 (42%), Positives = 89/155 (57%), Gaps = 5/155 (3%)

Query: 14  RRLFSMRLKVLYKESIALVEETSCYFDREGHLLSKTLPRAISKLYTSESVLLTTRLMQMV 73
           R  FS   + LY+E + LVEET+ Y D EG   +K L R  S  Y +ES+ LTTRLMQ+ 
Sbjct: 6   RFAFSRAFERLYREGMLLVEETAAYLDGEGRDAAKALSREASLAYAAESMRLTTRLMQVA 65

Query: 74  SWLFLQRALEDGNMTLEQVMSEKEKIKFD-YSGLDSTVPGWTELPCFFKNLVERSSQLQR 132
           SWL LQRA+ +G M+ EQ   EK +++ D  S  D    GW ELP   ++L+ RS +L  
Sbjct: 66  SWLLLQRAVREGEMSREQAAREKYRVRLDTPSPPDP--AGWAELPEALRDLIARSERLYA 123

Query: 133 RIVLLDQEIYRADFDEISRGPNHVQTQIKLLEACF 167
           R+  LD+E+Y  D        N V  Q+  L+A F
Sbjct: 124 RVARLDEELY-GDA-AAVAEDNPVSEQLARLKAAF 156


>gnl|CDD|178038 PLN02417, PLN02417, dihydrodipicolinate synthase.
          Length = 280

 Score = 27.3 bits (61), Expect = 2.1
 Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 47  SKTLPRAISKL-YTSESVLLTTRLMQMVSWLFLQ 79
           S  +P  + KL +  ++  L  +L+ ++ WLF +
Sbjct: 202 SNLVPGLMHKLMFAGKNKELNDKLLPLMDWLFCE 235


>gnl|CDD|147864 pfam05942, PaREP1, Archaeal PaREP1/PaREP8 family.  This family
           consists of several archaeal PaREP1 and PaREP8 proteins
           the function of this family is unknown.
          Length = 114

 Score = 27.2 bits (61), Expect = 2.2
 Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 8/75 (10%)

Query: 29  IALVEETSCYFDREGHLLSKTLPRAISKLYTS---ESVLLTTRLMQMVSWLFLQRALEDG 85
                + +     +G    + L +A++KL      E V L +  + +  + F      D 
Sbjct: 42  EKNRLKLAEKARGKGRWSHRLLMKAVAKLLEEGGEEVVDLWSLALDLHVYQFY-----DP 96

Query: 86  NMTLEQVMSEKEKIK 100
            + L  V   +E +K
Sbjct: 97  ELDLSDVEDREEAVK 111


>gnl|CDD|165239 PHA02928, PHA02928, Hypothetical protein; Provisional.
          Length = 214

 Score = 26.9 bits (59), Expect = 2.9
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 12  LNRRLFSMRLKVLYKESIALVEETSCYFDREGHLLSKTLPRAISKLYTSESV 63
           L +++ S R++ + K S  L   T  YF++ GHL+  TLP   ++ +   S+
Sbjct: 126 LFKKIDSYRIRAINKYSKELGLATE-YFNKYGHLMFYTLPIPYNRFFCRNSI 176


>gnl|CDD|184098 PRK13507, PRK13507, formate--tetrahydrofolate ligase; Provisional.
          Length = 587

 Score = 26.6 bits (59), Expect = 3.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 120 FKNLVERSSQLQRRIVLLDQEIYRAD 145
           FK L      L+ RI  + +E+Y AD
Sbjct: 463 FKFLYPLEMPLRERIETIAREVYGAD 488


>gnl|CDD|132565 TIGR03526, selenium_YgeY, putative selenium metabolism hydrolase.
           SelD, selenophosphate synthase, is the selenium donor
           protein for both selenocysteine and selenouridine
           biosynthesis systems, but it occurs also in a few
           prokaryotes that have neither of those pathways. The
           method of partial phylogenetic profiling, starting from
           such orphan-selD genomes, identifies this protein as one
           of those most strongly correlated to SelD occurrence.
           Its distribution is also well correlated with that of
           family TIGR03309, a putative accessory protein of labile
           selenium (non-selenocysteine) enzyme maturation. This
           family includes the uncharacterized YgeY of Escherichia
           coli, and belongs to a larger family of metalloenzymes
           in which some are known peptidases, others enzymes of
           different types.
          Length = 395

 Score = 26.7 bits (59), Expect = 3.3
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 4/38 (10%)

Query: 31  LVEETSCYFD----REGHLLSKTLPRAISKLYTSESVL 64
           LV  T CYF      E HL++K       +L+  E  +
Sbjct: 299 LVYPTECYFPTWVLPEDHLITKAALETYKRLFGKEPGV 336


>gnl|CDD|173597 PTZ00407, PTZ00407, DNA topoisomerase IA; Provisional.
          Length = 805

 Score = 26.4 bits (58), Expect = 3.3
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 11/64 (17%)

Query: 40  DREGHLLSKTLPRAISKLYTSESVLLTTRLMQMVSWLFLQRALEDGNMTLEQVMSEKEKI 99
           DREG L++    + I +LY    V  +   M  ++        EDG   + + M E+   
Sbjct: 135 DREGELIAVHALQTIKRLYPKLKVPFSRAYMHSIT--------EDG---IRKAMRERHVE 183

Query: 100 KFDY 103
             DY
Sbjct: 184 ACDY 187


>gnl|CDD|181640 PRK09077, PRK09077, L-aspartate oxidase; Provisional.
          Length = 536

 Score = 26.4 bits (59), Expect = 3.5
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 8/42 (19%)

Query: 113 WTELPCFFKNLV------ERSSQLQRRIVLLDQEI--YRADF 146
           W EL  F  + V      +R  +   RI LL QEI  Y A+F
Sbjct: 439 WHELRLFMWDYVGIVRTTKRLERALHRIRLLQQEIDEYYANF 480


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.322    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,647,774
Number of extensions: 153916
Number of successful extensions: 272
Number of sequences better than 10.0: 1
Number of HSP's gapped: 270
Number of HSP's successfully gapped: 13
Length of query: 170
Length of database: 5,994,473
Length adjustment: 87
Effective length of query: 83
Effective length of database: 4,114,577
Effective search space: 341509891
Effective search space used: 341509891
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.8 bits)