RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780650|ref|YP_003065063.1| hypothetical protein
CLIBASIA_02685 [Candidatus Liberibacter asiaticus str. psy62]
(170 letters)
>3ctw_B RCDA; protein binding; 2.90A {Caulobacter crescentus}
Length = 169
Score = 165 bits (420), Expect = 4e-42
Identities = 54/144 (37%), Positives = 78/144 (54%), Gaps = 5/144 (3%)
Query: 24 LYKESIALVEETSCYFDREGHLLSKTLPRAISKLYTSESVLLTTRLMQMVSWLFLQRALE 83
++E + LVEET+ Y D G SK L R + Y +ES+ LTTRLMQ+ SWL +QRA+
Sbjct: 29 TFEEGMQLVEETAAYLDGAGRHDSKVLSRNAALGYATESMRLTTRLMQVASWLLVQRAVR 88
Query: 84 DGNMTLEQVMSEKEKIKFDYSGLDSTVPGWTELPCFFKNLVERSSQLQRRIVLLDQEIYR 143
+G M E +E ++ + + P ELP NL++RS +L R+ LD+ +Y
Sbjct: 89 EGEMPPEAACAEAYRLAEEA---PADGPAVEELPFGLMNLLQRSERLYERVRHLDRRMYV 145
Query: 144 ADFDEISRGPNHVQTQIKLLEACF 167
+E P VQ Q+ L A F
Sbjct: 146 ESPNE--EAPRPVQNQLDRLTAAF 167
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 33.4 bits (76), Expect = 0.030
Identities = 24/166 (14%), Positives = 51/166 (30%), Gaps = 54/166 (32%)
Query: 21 LKVLYKESIALVEETSCYFDREGHLLSKTLP----------RAISKLYTSESVLLTTRLM 70
L + E E + H L+ L + + K Y + ++
Sbjct: 84 LNLCLTEF-----ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD 138
Query: 71 QM-VSWLFLQRALEDGNMTLEQVMSEKEKIKF-------DYSGLDSTVPGWTEL------ 116
+ S LF RA+ +GN L + F DY + EL
Sbjct: 139 KKSNSALF--RAVGEGNAQLVAI--------FGGQGNTDDY--FE-------ELRDLYQT 179
Query: 117 -PCFFKNLVERSSQLQRRIVLLDQE---IYRADFDEIS--RGPNHV 156
+L++ S++ ++ + ++ + + P++
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative
formyltetrahydrofolate synthetase, structural genomics;
HET: MSE; 1.85A {Thermotoga maritima}
Length = 543
Score = 28.3 bits (63), Expect = 0.83
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 114 TELPCFFKNLVERSSQLQRRIVLLDQEIYRADFDEISRGPNHVQTQIKLLEA 165
L E + ++++I +L +EIYRA E S + + +K ++
Sbjct: 415 AAKDVEPAYLYEMNDPVEKKIEILAKEIYRAGRVEFS---DTAKNALKFIKK 463
>3ej6_A Catalase-3; heme, hydrogen peroxide, iron, metal-binding,
oxidoreductase, peroxidase; HET: NAG HEM; 2.30A
{Neurospora crassa}
Length = 688
Score = 28.0 bits (62), Expect = 1.3
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 78 LQRALEDGN---MTLE-QVMSEKEKIKFDYSGLDSTVPGWTE 115
L A+E GN L Q++ E + + + LD T E
Sbjct: 265 LWDAIESGNAPSWELAVQLIDEDKAQAYGFDLLDPTKF-LPE 305
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin
biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces
cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Length = 168
Score = 27.4 bits (61), Expect = 1.5
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Query: 109 TVPGWTELPCFFKNLVERSSQLQRRI-------VLLDQEIYRADF--DEISRGPNHVQTQ 159
TVPG ELP K V+R ++L + + VL+ ++ D + ++Q +
Sbjct: 56 TVPGSYELPWGTKRFVDRQAKLGKPLDVVIPIGVLIKGSTMHFEYISDSTTHALMNLQEK 115
>1m7s_A Catalase; beta barrel, alpha helical domain, oxidoreductase; HET:
HEM; 1.80A {Pseudomonas syringae} SCOP: e.5.1.1
Length = 484
Score = 27.5 bits (61), Expect = 1.6
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 78 LQRALEDGN---MTLE-QVMSEKEKIKFDYSGLDSTVPGWTELP 117
L A++ G+ L QV+ +E KFD+ LD+T W ++P
Sbjct: 241 LVGAIKKGDFPKWDLYVQVLKPEELAKFDFDPLDATKI-WPDVP 283
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.3 bits (59), Expect = 1.8
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 42 EGHLLSKTLPRAISKLYTSES--VLLTTRLMQ 71
E L K L +A KLY +S L M+
Sbjct: 18 EKQALKK-L-QASLKLYADDSAPALAIKATME 47
>1qwl_A KATA catalase; beta barrel, azide complex, oxyferryl complex,
oxidoreductase; HET: HEM; 1.60A {Helicobacter pylori}
SCOP: e.5.1.1 PDB: 1qwm_A* 2a9e_A* 2iqf_A*
Length = 505
Score = 26.4 bits (58), Expect = 3.5
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 78 LQRALEDGN---MTLE-QVMSEKEKIKFDYSGLDSTVPGWTE 115
L A+ G+ L QVM E++ K+ + D T +T+
Sbjct: 246 LFDAIARGDYPKWKLSIQVMPEEDAKKYRFHPFDVTKIWYTQ 287
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate,
citrulline, structural genomics, structural genomics
consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Length = 413
Score = 26.1 bits (57), Expect = 3.9
Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 93 MSEKEKIKFDYS-GLDSTV 110
MS K + YS GLD++
Sbjct: 2 MSSKGSVVLAYSGGLDTSC 20
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske
non-heme dioxygenase, substrate specificity iron-
sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP:
b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A*
2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A
1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Length = 447
Score = 26.1 bits (56), Expect = 4.5
Identities = 7/30 (23%), Positives = 18/30 (60%)
Query: 120 FKNLVERSSQLQRRIVLLDQEIYRADFDEI 149
++NLV + Q+ ++ D+E+++ + I
Sbjct: 3 YQNLVSEAGLTQKLLIHGDKELFQHELKTI 32
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.135 0.387
Gapped
Lambda K H
0.267 0.0590 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,376,402
Number of extensions: 57690
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 12
Length of query: 170
Length of database: 5,693,230
Length adjustment: 86
Effective length of query: 84
Effective length of database: 3,608,246
Effective search space: 303092664
Effective search space used: 303092664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)