BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780650|ref|YP_003065063.1| hypothetical protein
CLIBASIA_02685 [Candidatus Liberibacter asiaticus str. psy62]
         (170 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780650|ref|YP_003065063.1| hypothetical protein CLIBASIA_02685 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 170

 Score =  350 bits (898), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 170/170 (100%), Positives = 170/170 (100%)

Query: 1   MSNRVSGSISCLNRRLFSMRLKVLYKESIALVEETSCYFDREGHLLSKTLPRAISKLYTS 60
           MSNRVSGSISCLNRRLFSMRLKVLYKESIALVEETSCYFDREGHLLSKTLPRAISKLYTS
Sbjct: 1   MSNRVSGSISCLNRRLFSMRLKVLYKESIALVEETSCYFDREGHLLSKTLPRAISKLYTS 60

Query: 61  ESVLLTTRLMQMVSWLFLQRALEDGNMTLEQVMSEKEKIKFDYSGLDSTVPGWTELPCFF 120
           ESVLLTTRLMQMVSWLFLQRALEDGNMTLEQVMSEKEKIKFDYSGLDSTVPGWTELPCFF
Sbjct: 61  ESVLLTTRLMQMVSWLFLQRALEDGNMTLEQVMSEKEKIKFDYSGLDSTVPGWTELPCFF 120

Query: 121 KNLVERSSQLQRRIVLLDQEIYRADFDEISRGPNHVQTQIKLLEACFENF 170
           KNLVERSSQLQRRIVLLDQEIYRADFDEISRGPNHVQTQIKLLEACFENF
Sbjct: 121 KNLVERSSQLQRRIVLLDQEIYRADFDEISRGPNHVQTQIKLLEACFENF 170


>gi|254780569|ref|YP_003064982.1| phosphoribosylaminoimidazole synthetase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 357

 Score = 26.9 bits (58), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 43  GHLLSKTLPRAISKLYTSESVLLTTRLMQMVSWL 76
           G  L++ +PRAI    T+   L +  + Q++SWL
Sbjct: 256 GGGLTENIPRAIPAHLTASINLNSVEVPQIISWL 289


>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 1828

 Score = 23.5 bits (49), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 7/44 (15%)

Query: 127 SSQLQRRIVLLDQEIYRADFDEISRGP---NHVQTQIKLLEACF 167
           SS +++ IVL+ +EI RA    ISR       V+++I++LE  +
Sbjct: 197 SSAVRKEIVLMTEEIDRA----ISRASELEKTVRSEIEVLENNY 236


>gi|254780445|ref|YP_003064858.1| isoleucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 963

 Score = 23.5 bits (49), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 76  LFLQRALEDGNMTLEQVMSEKEKIKF 101
           L + + L DG+    + +SE EKI+F
Sbjct: 450 LHMDKKLGDGSTLRSRALSEVEKIRF 475


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.135    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,900
Number of Sequences: 1233
Number of extensions: 3410
Number of successful extensions: 11
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 5
length of query: 170
length of database: 328,796
effective HSP length: 68
effective length of query: 102
effective length of database: 244,952
effective search space: 24985104
effective search space used: 24985104
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 35 (18.1 bits)