Query gi|254780651|ref|YP_003065064.1| hypothetical protein CLIBASIA_02690 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 30 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 31 17:46:45 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780651.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2pmr_A Uncharacterized protein 5.8 1.9E+02 0.0079 13.3 1.4 20 1-20 1-20 (87) 2 2dla_A 397AA long hypothetical 5.6 1.1E+02 0.0048 14.3 0.2 14 1-14 4-17 (222) 3 3npd_A Putative secreted prote 3.9 2.8E+02 0.012 12.4 1.7 17 8-24 75-91 (118) 4 2qb0_B Telsam domain - lysozym 3.4 3.2E+02 0.013 12.2 2.1 16 5-20 221-236 (241) 5 2oo2_A Hypothetical protein AF 3.4 3.2E+02 0.013 12.2 1.3 19 2-20 4-22 (86) 6 2pbi_A Regulator of G-protein 2.7 2.8E+02 0.012 12.4 0.2 12 19-30 93-105 (424) 7 2g9p_A Antimicrobial peptide l 2.6 4E+02 0.017 11.7 1.3 10 4-13 2-11 (26) 8 2l49_A C protein; P2 bacteriop 2.5 4.1E+02 0.017 11.6 1.2 14 1-14 1-14 (99) 9 1jbw_A Folylpolyglutamate synt 2.3 4.5E+02 0.019 11.5 1.3 26 3-28 389-414 (428) 10 1swy_A Lysozyme; RB+ binding s 2.2 4.5E+02 0.019 11.5 2.1 14 6-19 143-156 (164) No 1 >2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; 1.32A {Methanothermobacterthermautotrophicus str} SCOP: a.8.11.1 Probab=5.81 E-value=1.9e+02 Score=13.28 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=14.7 Q ss_pred CCHHHHHHHHHHHHHHHHCC Q ss_conf 95047889999999985041 Q gi|254780651|r 1 MADSFGKRIKGYLKIMESGL 20 (30) Q Consensus 1 madsfgkrikgylkimesgl 20 (30) |+...-.|++-|+++++..| T Consensus 1 M~~el~ErvekYi~~~eeAl 20 (87) T 2pmr_A 1 MSLDCRERIEKDLELLEKNL 20 (87) T ss_dssp ----CHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHH T ss_conf 97079999999999999999 No 2 >2dla_A 397AA long hypothetical protein; helix bundle, twisted beta-sheet, replication; 2.90A {Pyrococcus horikoshii OT3} Probab=5.65 E-value=1.1e+02 Score=14.33 Aligned_cols=14 Identities=43% Similarity=0.674 Sum_probs=10.4 Q ss_pred CCHHHHHHHHHHHH Q ss_conf 95047889999999 Q gi|254780651|r 1 MADSFGKRIKGYLK 14 (30) Q Consensus 1 madsfgkrikgylk 14 (30) |-|.||+|-|-.+| T Consensus 4 MLDPFg~kAk~Llk 17 (222) T 2dla_A 4 MLDPFSEKAKELLK 17 (222) T ss_dssp CSCTTSHHHHHHTT T ss_pred EECCHHHHHHHHHH T ss_conf 43623089999999 No 3 >3npd_A Putative secreted protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: CXS; 1.60A {Pseudomonas aeruginosa} Probab=3.92 E-value=2.8e+02 Score=12.43 Aligned_cols=17 Identities=24% Similarity=0.532 Sum_probs=14.0 Q ss_pred HHHHHHHHHHHCCEEEC Q ss_conf 99999999850413346 Q gi|254780651|r 8 RIKGYLKIMESGLVLRN 24 (30) Q Consensus 8 rikgylkimesglvlrn 24 (30) +-.||-+.|..|-|+|- T Consensus 75 ~N~gyR~LmakGAvmrY 91 (118) T 3npd_A 75 SNTGYRQLLARGAILTY 91 (118) T ss_dssp TCHHHHHHHTTTCEEEE T ss_pred CCCCHHHHHHCCCEEEE T ss_conf 58128999847766998 No 4 >2qb0_B Telsam domain - lysozyme chimera; helical polymer, hydrolase regulator; 2.56A {Escherichia coli} Probab=3.43 E-value=3.2e+02 Score=12.20 Aligned_cols=16 Identities=19% Similarity=0.275 Sum_probs=13.1 Q ss_pred HHHHHHHHHHHHHHCC Q ss_conf 7889999999985041 Q gi|254780651|r 5 FGKRIKGYLKIMESGL 20 (30) Q Consensus 5 fgkrikgylkimesgl 20 (30) -|+|.++..++|+||. T Consensus 221 ~~~R~~~l~~~mrtG~ 236 (241) T 2qb0_B 221 TPNRAKRVITTFRTGT 236 (241) T ss_dssp SHHHHHHHHHHHHHSS T ss_pred CCHHHHHHHHHHHCCC T ss_conf 6763599999997677 No 5 >2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein structure initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1 Probab=3.41 E-value=3.2e+02 Score=12.18 Aligned_cols=19 Identities=11% Similarity=0.303 Sum_probs=13.6 Q ss_pred CHHHHHHHHHHHHHHHHCC Q ss_conf 5047889999999985041 Q gi|254780651|r 2 ADSFGKRIKGYLKIMESGL 20 (30) Q Consensus 2 adsfgkrikgylkimesgl 20 (30) ..-...|++-|+.+++..| T Consensus 4 ~~el~Er~eKYi~~~eeal 22 (86) T 2oo2_A 4 EEELRRETLKWLERIEERV 22 (86) T ss_dssp HHHHHHHHHHHHHHHHHHG T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 6999999999999999999 No 6 >2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, beta propeller, signaling protein; 1.95A {Mus musculus} Probab=2.67 E-value=2.8e+02 Score=12.42 Aligned_cols=12 Identities=50% Similarity=1.124 Sum_probs=6.3 Q ss_pred CCEEE-CCCEECC Q ss_conf 41334-6822049 Q gi|254780651|r 19 GLVLR-NGSFYRF 30 (30) Q Consensus 19 glvlr-ngsfyrf 30 (30) +++++ .++|||| T Consensus 93 ~~~~kdd~t~YRf 105 (424) T 2pbi_A 93 NLILKPDSSLYRF 105 (424) T ss_dssp CCSCCSSSCEEEE T ss_pred CCEECCCCEEEEE T ss_conf 4414489714752 No 7 >2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic} Probab=2.56 E-value=4e+02 Score=11.70 Aligned_cols=10 Identities=50% Similarity=0.644 Sum_probs=6.6 Q ss_pred HHHHHHHHHH Q ss_conf 4788999999 Q gi|254780651|r 4 SFGKRIKGYL 13 (30) Q Consensus 4 sfgkrikgyl 13 (30) -|||-||-+- T Consensus 2 lfgklikkfg 11 (26) T 2g9p_A 2 LFGKLIKKFG 11 (26) T ss_dssp HHHHHHHHHT T ss_pred CHHHHHHHHH T ss_conf 3789999991 No 8 >2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A Probab=2.48 E-value=4.1e+02 Score=11.64 Aligned_cols=14 Identities=21% Similarity=0.313 Sum_probs=10.0 Q ss_pred CCHHHHHHHHHHHH Q ss_conf 95047889999999 Q gi|254780651|r 1 MADSFGKRIKGYLK 14 (30) Q Consensus 1 madsfgkrikgylk 14 (30) |-.+||+|||-.-+ T Consensus 1 m~~~ig~rik~~R~ 14 (99) T 2l49_A 1 MSNTISEKIVLMRK 14 (99) T ss_dssp CCCCTTHHHHHHHH T ss_pred CCHHHHHHHHHHHH T ss_conf 95799999999999 No 9 >1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A Probab=2.27 E-value=4.5e+02 Score=11.49 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=15.9 Q ss_pred HHHHHHHHHHHHHHHHCCEEECCCEE Q ss_conf 04788999999998504133468220 Q gi|254780651|r 3 DSFGKRIKGYLKIMESGLVLRNGSFY 28 (30) Q Consensus 3 dsfgkrikgylkimesglvlrngsfy 28 (30) ++.-+-|+--++..+.+.+|--|||| T Consensus 389 ~~~~eAi~~a~~~~~~d~ilI~GS~y 414 (428) T 1jbw_A 389 DSWQEALAASLNDVPDQPIVITGSLY 414 (428) T ss_dssp SSHHHHHHHHHHHCTTSCEEEEESHH T ss_pred CCHHHHHHHHHHHCCCCCEEEECHHH T ss_conf 88999999999748999699976799 No 10 >1swy_A Lysozyme; RB+ binding sites, AB initio direct methods, hydrolase; 1.06A {Enterobacteria phage T4} SCOP: d.2.1.3 PDB: 1swz_A 1sx2_A 1sx7_A 3fad_A 3f9l_A 2nzn_A 3c8s_A 3cdr_A 2nzb_A 3c8q_A 3c7w_A 3cdq_A 3f8v_A 1l34_A 3c7y_A 2lzm_A 1t6h_A* 1lyd_A 3lzm_A 4lzm_A ... Probab=2.24 E-value=4.5e+02 Score=11.47 Aligned_cols=14 Identities=21% Similarity=0.396 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHC Q ss_conf 88999999998504 Q gi|254780651|r 6 GKRIKGYLKIMESG 19 (30) Q Consensus 6 gkrikgylkimesg 19 (30) |+|.++..++|.+| T Consensus 143 ~~R~~~~~~~~r~g 156 (164) T 1swy_A 143 PNRAKRVITTFRTG 156 (164) T ss_dssp HHHHHHHHHHHHHS T ss_pred CHHHHHHHHHHHCC T ss_conf 55799999999768 Done!