Query gi|254780651|ref|YP_003065064.1| hypothetical protein CLIBASIA_02690 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 30
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 08:20:58 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780651.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u94a2 d.48.1.1 (A:269-328) R 14.0 25 0.0018 16.3 0.7 15 16-30 11-25 (60)
2 d1mo6a2 d.48.1.1 (A:270-329) R 10.2 49 0.0036 14.9 1.3 15 16-30 11-25 (60)
3 d1xp8a2 d.48.1.1 (A:283-341) R 6.8 76 0.0056 14.0 1.1 15 16-30 10-24 (59)
4 d1ei5a1 b.61.3.1 (A:336-417) D 6.3 72 0.0052 14.1 0.7 10 16-25 18-27 (82)
5 d2pmra1 a.8.11.1 (A:3-77) Unch 5.8 1.1E+02 0.0083 13.2 1.5 14 7-20 3-16 (75)
6 d2oo2a1 a.8.11.1 (A:1-75) Hypo 5.4 1.2E+02 0.0084 13.2 1.3 19 2-20 2-20 (75)
7 d1wb9a4 d.75.2.1 (A:2-116) DNA 3.6 1.3E+02 0.0093 12.9 0.5 22 9-30 13-38 (115)
8 d1ewqa4 d.75.2.1 (A:1-120) DNA 3.5 1.8E+02 0.013 12.2 2.5 21 9-29 17-41 (120)
9 d1xl7a1 c.43.1.3 (A:11-392) Pe 3.4 1.5E+02 0.011 12.6 0.6 10 20-29 183-192 (382)
10 d1r0va2 c.52.2.1 (A:215-305) D 3.1 2E+02 0.015 12.0 2.8 25 4-28 1-25 (91)
No 1
>d1u94a2 d.48.1.1 (A:269-328) RecA protein, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=14.04 E-value=25 Score=16.33 Aligned_cols=15 Identities=20% Similarity=0.725 Sum_probs=12.4
Q ss_pred HHHCCEEECCCEECC
Q ss_conf 850413346822049
Q gi|254780651|r 16 MESGLVLRNGSFYRF 30 (30)
Q Consensus 16 mesglvlrngsfyrf 30 (30)
.+-|+|-+.||+|.|
T Consensus 11 v~~~ii~KsGsWysy 25 (60)
T d1u94a2 11 VKEKLIEKAGAWYSY 25 (60)
T ss_dssp HHTTSEECCTTCEEE
T ss_pred HHCCCCCCCCCEEEE
T ss_conf 972940126450776
No 2
>d1mo6a2 d.48.1.1 (A:270-329) RecA protein, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=10.20 E-value=49 Score=14.90 Aligned_cols=15 Identities=20% Similarity=0.908 Sum_probs=12.3
Q ss_pred HHHCCEEECCCEECC
Q ss_conf 850413346822049
Q gi|254780651|r 16 MESGLVLRNGSFYRF 30 (30)
Q Consensus 16 mesglvlrngsfyrf 30 (30)
.+-++|-+.||+|.|
T Consensus 11 ~~~~ii~KsGaWysy 25 (60)
T d1mo6a2 11 VDQGLIRKSGAWFTY 25 (60)
T ss_dssp HTTTSSEESSSEEEC
T ss_pred HHCCHHHCCCCEEEE
T ss_conf 974836506863678
No 3
>d1xp8a2 d.48.1.1 (A:283-341) RecA protein, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=6.84 E-value=76 Score=14.00 Aligned_cols=15 Identities=27% Similarity=0.787 Sum_probs=11.8
Q ss_pred HHHCCEEECCCEECC
Q ss_conf 850413346822049
Q gi|254780651|r 16 MESGLVLRNGSFYRF 30 (30)
Q Consensus 16 mesglvlrngsfyrf 30 (30)
.+-|+|-+.||+|.|
T Consensus 10 v~~~ii~KsGaWysy 24 (59)
T d1xp8a2 10 ADMDIIKKAGSFYSY 24 (59)
T ss_dssp HHTTSSEEETTEEES
T ss_pred HHCCCEECCCCEEEE
T ss_conf 974964235023878
No 4
>d1ei5a1 b.61.3.1 (A:336-417) D-aminopeptidase, middle and C-terminal domains {Ochrobactrum anthropi [TaxId: 529]}
Probab=6.33 E-value=72 Score=14.13 Aligned_cols=10 Identities=50% Similarity=0.537 Sum_probs=7.2
Q ss_pred HHHCCEEECC
Q ss_conf 8504133468
Q gi|254780651|r 16 MESGLVLRNG 25 (30)
Q Consensus 16 mesglvlrng 25 (30)
-|+||||+-+
T Consensus 18 ~EtGLvLsle 27 (82)
T d1ei5a1 18 DETGLVLSLE 27 (82)
T ss_dssp TTTCCEEEEE
T ss_pred CCCCEEEEEE
T ss_conf 7763399962
No 5
>d2pmra1 a.8.11.1 (A:3-77) Uncharacterized protein MTH1690 {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=5.80 E-value=1.1e+02 Score=13.17 Aligned_cols=14 Identities=36% Similarity=0.622 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 89999999985041
Q gi|254780651|r 7 KRIKGYLKIMESGL 20 (30)
Q Consensus 7 krikgylkimesgl 20 (30)
.||+-|++++|..|
T Consensus 3 ErvekYi~~~eeAl 16 (75)
T d2pmra1 3 ERIEKDLELLEKNL 16 (75)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 88999999999999
No 6
>d2oo2a1 a.8.11.1 (A:1-75) Hypothetical protein AF1782 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=5.36 E-value=1.2e+02 Score=13.15 Aligned_cols=19 Identities=11% Similarity=0.303 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHHHHHCC
Q ss_conf 5047889999999985041
Q gi|254780651|r 2 ADSFGKRIKGYLKIMESGL 20 (30)
Q Consensus 2 adsfgkrikgylkimesgl 20 (30)
.+-...|++-|++++|..|
T Consensus 2 e~el~eriekYi~~~eeaL 20 (75)
T d2oo2a1 2 EEELRRETLKWLERIEERV 20 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHHHHH
T ss_conf 2799999999999899999
No 7
>d1wb9a4 d.75.2.1 (A:2-116) DNA repair protein MutS, domain I {Escherichia coli [TaxId: 562]}
Probab=3.64 E-value=1.3e+02 Score=12.93 Aligned_cols=22 Identities=36% Similarity=0.706 Sum_probs=14.1
Q ss_pred HHHHHHHH----HHCCEEECCCEECC
Q ss_conf 99999998----50413346822049
Q gi|254780651|r 9 IKGYLKIM----ESGLVLRNGSFYRF 30 (30)
Q Consensus 9 ikgylkim----esglvlrngsfyrf 30 (30)
.+-|+.|. ++=|..|.|+||.+
T Consensus 13 ~~Qy~eiK~~~pd~ill~rvG~FYE~ 38 (115)
T d1wb9a4 13 MQQYLRLKAQHPEILLFYRMGDFYTL 38 (115)
T ss_dssp HHHHHHHHHHSTTSEEEEEETTEEEE
T ss_pred HHHHHHHHHHCCCEEEEEEECCCHHH
T ss_conf 99999999878986999996865122
No 8
>d1ewqa4 d.75.2.1 (A:1-120) DNA repair protein MutS, domain I {Thermus aquaticus [TaxId: 271]}
Probab=3.51 E-value=1.8e+02 Score=12.24 Aligned_cols=21 Identities=24% Similarity=0.651 Sum_probs=13.7
Q ss_pred HHHHHHHHH----HCCEEECCCEEC
Q ss_conf 999999985----041334682204
Q gi|254780651|r 9 IKGYLKIME----SGLVLRNGSFYR 29 (30)
Q Consensus 9 ikgylkime----sglvlrngsfyr 29 (30)
++-|..+.+ +=+..|.|+||.
T Consensus 17 ~~qY~~~K~~~~d~Ivl~qvG~FYE 41 (120)
T d1ewqa4 17 LQQYVELRDQYPDYLLLFQVGDFYE 41 (120)
T ss_dssp HHHHHHHHHHCTTSEEEEEETTEEE
T ss_pred HHHHHHHHHHCCCEEEEEEECCEEE
T ss_conf 9999999987899699998288989
No 9
>d1xl7a1 c.43.1.3 (A:11-392) Peroxisomal carnitine O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.39 E-value=1.5e+02 Score=12.60 Aligned_cols=10 Identities=30% Similarity=0.384 Sum_probs=5.6
Q ss_pred CEEECCCEEC
Q ss_conf 1334682204
Q gi|254780651|r 20 LVLRNGSFYR 29 (30)
Q Consensus 20 lvlrngsfyr 29 (30)
+|++||-||.
T Consensus 183 vVl~~g~~yk 192 (382)
T d1xl7a1 183 AVLCRGRAFV 192 (382)
T ss_dssp EEEETTEEEE
T ss_pred EEEECCCEEE
T ss_conf 9997893089
No 10
>d1r0va2 c.52.2.1 (A:215-305) Dimeric tRNA splicing endonuclease, domains 2 and 4 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=3.06 E-value=2e+02 Score=12.00 Aligned_cols=25 Identities=28% Similarity=0.619 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHCCEEECCCEE
Q ss_conf 4788999999998504133468220
Q gi|254780651|r 4 SFGKRIKGYLKIMESGLVLRNGSFY 28 (30)
Q Consensus 4 sfgkrikgylkimesglvlrngsfy 28 (30)
+|-.+-.-|-...+.|.+++.|.-|
T Consensus 1 ~F~~~y~vy~~lr~~G~vv~~G~Kf 25 (91)
T d1r0va2 1 NFDRRYEVYRNLKERGFVVKTGFKF 25 (91)
T ss_dssp THHHHHHHHHHHHHTTCEEEECGGG
T ss_pred CHHHHHHHHHHHHHCCCEECCCCCC
T ss_conf 9678759999999888898777642
Done!