Query gi|254780652|ref|YP_003065065.1| Fructose-bisphosphate aldolase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 339 No_of_seqs 143 out of 956 Neff 4.4 Searched_HMMs 33803 Date Wed Jun 1 15:12:00 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780652.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2qap_A Fructose-1,6-bisphosph 100.0 0 0 1021.6 37.7 338 1-338 41-381 (391) 2 >2pc4_A 41 kDa antigen, fructo 100.0 0 0 1021.9 33.8 338 2-339 19-359 (369) 3 >3kx6_A Fructose-bisphosphate 100.0 0 0 1013.4 35.3 337 2-338 31-370 (379) 4 >3bv4_A Fructose-bisphosphate 100.0 0 0 1008.8 35.9 330 2-331 9-341 (341) 5 >2iqt_A Fructose-bisphosphate 100.0 0 0 814.1 20.9 284 2-326 3-295 (296) 6 >3iv3_A Tagatose 1,6-diphospha 100.0 6.6E-40 2E-44 280.7 9.3 287 22-319 1-308 (332) 7 >1to3_A Putative aldolase YIHT 90.6 1.3 3.9E-05 24.1 10.8 250 14-303 14-268 (304) 8 >3fok_A Uncharacterized protei 63.9 10 0.00031 18.2 8.8 136 124-294 135-278 (307) 9 >3ju2_A Uncharacterized protei 60.1 12 0.00036 17.7 5.2 95 81-179 50-146 (284) 10 >1jgt_A Beta-lactam synthetase 51.1 17 0.0005 16.8 5.4 18 83-100 45-63 (300) 11 >1fwx_A Nitrous oxide reductas 45.0 9.2 0.00027 18.5 1.3 12 254-265 15-26 (115) 12 >2bkx_A Glucosamine-6-phosphat 41.7 24 0.0007 15.8 3.9 21 253-273 191-211 (242) 13 >2qul_A D-tagatose 3-epimerase 38.8 26 0.00077 15.6 8.2 216 80-318 50-281 (290) 14 >3ief_A TRNA (guanine-N(1)-)-m 37.3 28 0.00082 15.4 2.8 28 176-203 23-50 (65) 15 >1uuf_A YAHK, zinc-type alcoho 34.9 30 0.00089 15.2 2.7 40 134-177 155-195 (226) 16 >1qni_A Nitrous-oxide reductas 34.2 16 0.00047 17.0 1.1 13 254-266 20-32 (140) 17 >2vxb_A DNA repair protein RHP 32.9 14 0.00041 17.3 0.6 23 297-319 15-37 (77) 18 >1wdk_A Fatty oxidation comple 32.8 24 0.00071 15.8 1.8 22 113-134 12-33 (50) 19 >1y89_A DEVB protein; structur 31.8 18 0.00055 16.5 1.1 98 167-272 85-204 (238) 20 >1hdo_A Biliverdin IX beta red 31.6 34 0.001 14.8 5.8 173 79-263 16-206 (206) 21 >3eb9_A 6-phosphogluconolacton 30.7 35 0.001 14.7 3.6 20 252-271 211-230 (266) 22 >1oy5_A TRNA (guanine-N(1)-)-m 28.1 22 0.00066 16.0 1.0 20 176-195 22-41 (50) 23 >2juz_A UPF0352 protein HI0840 27.7 29 0.00087 15.2 1.5 26 192-217 10-37 (80) 24 >1ual_A TRNA (guanine-N(1)-)-m 25.9 42 0.0013 14.2 2.8 28 176-203 23-50 (85) 25 >2p0y_A Hypothetical protein L 24.8 32 0.00095 15.0 1.3 28 18-45 38-65 (341) 26 >2jrx_A UPF0352 protein YEJL; 24.7 31 0.00093 15.0 1.2 31 192-223 10-42 (83) 27 >1ne7_A Glucosamine-6-phosphat 24.0 46 0.0014 13.9 3.3 20 252-271 196-215 (289) No 1 >>2qap_A Fructose-1,6-bisphosphate aldolase; beta barrel, C-teminal tail, lyase; 1.59A {Leishmania mexicana} (A:) Probab=100.00 E-value=0 Score=1021.58 Aligned_cols=338 Identities=41% Similarity=0.671 Sum_probs=332.5 Q ss_pred CHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHEECCCCHHEEEEEECCHHHHHHCCCCCC Q ss_conf 94799999999974799099914688775787885789998678875456410077802304643467788410004887 Q gi|254780652|r 1 MMQDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQYISSILLYEETLYQNAQDGT 80 (339) Q Consensus 1 m~~eL~~~a~~~~~~gKGilAaDeS~gt~~Krl~~igventeenr~~~R~~l~tsp~~~~~IsGvILfeeTl~q~~~~g~ 80 (339) +.+||.+||++|+++||||||||||+|||||||++|||||||||||+||+||||||+|++||||||||||||||++++|+ T Consensus 41 ~~~eL~~~a~~i~~~GkGIlAaDES~gT~~Krl~~iGventeenrr~~R~ll~tsp~~~~~IsGaILFeeTl~q~~~~g~ 120 (391) T 2qap_A 41 YESELIATVKKLTTPGKGLLAADESIGSCTKRFQPIGLSNTEEHRRQYRALMLEAEGFEQYISGVILHDETVGQKASNGQ 120 (391) T ss_dssp THHHHHHHHHHHTCTTCEEEEECCCTTTHHHHHGGGTCCCCHHHHHHHHHHHHTCTTGGGTEEEEEECHHHHTCBCTTSS T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHCEEEEECCHHHCCCCCCCCC T ss_conf 89999999999816998698715889827777886599997999999999873797655554689813554077157998 Q ss_pred CHHHHHHHCCCEEEEEECCCEEECC-CCCCCCCCCCHHHHHHHHHHHHHCCCEEECCEECCCCCCCCCHHHHHHHHHHHH Q ss_conf 4679899579878994278542178-999862157835799999985433955501000233677874088889989999 Q gi|254780652|r 81 SFVDLISSSGVLVGIKVDRGLKPYP-LYPGEHITVGLDDLDVRLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHIL 159 (339) Q Consensus 81 ~~~~~l~~kGIvpgIKVDkGl~~l~-g~~~e~~t~GLD~L~eR~~~y~~~Ga~faKwRaVi~i~~~~Ps~~~I~~na~~l 159 (339) +|+++|+++|||||||||||++|++ |+++|++|+|||||++||++||+.|||||||||||+|+++.||+++|.+|+++| T Consensus 121 ~~~~ll~~kGIvPgIKVDkGl~~l~~G~~~e~~t~GLD~L~~R~~~y~~~Ga~faKwRsVi~i~~~~ps~~~I~~na~~l 200 (391) T 2qap_A 121 TFPEYLTARGVVPGIKTDMGLCPLLEGAEGEQMTEGLDGYVKRASAYYKKGCRFCKWRNVYKIQNGTVSESAVRFNAETL 200 (391) T ss_dssp BHHHHHHHTTCEEEEECCCCEEECSSSSTTCEEECCCTTHHHHHHHHHHTTCCEEEEEEEECCBTTBCCHHHHHHHHHHH T ss_pred CHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHH T ss_conf 55899984666254543765146778997352056635799999988742332130234213677774167777667999 Q ss_pred HHHHHHHHHCCCCCEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHH Q ss_conf 9999999844787201101103775798999999999999999998763853111000025565764443-589889987 Q gi|254780652|r 160 ARYAVLCQNAGLVPIVEPEVLMEGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAP-QVSDEEIAS 238 (339) Q Consensus 160 arYA~i~Q~~GLVPIVEPEVl~dG~H~ie~~~~vte~vL~~lf~~L~~~~V~leg~lLKpnMv~pG~~~~-~~~~eevA~ 238 (339) ||||+|||++||||||||||+|||+|++++|+.||++||++||++|.+|+|+|||+|||||||+||.+|+ +++|++||. T Consensus 201 aryA~icq~~GLVPIVEPEVlidg~h~~e~~~~vte~vl~~v~~~l~~~~V~LEg~lLKpnMv~pG~~~~k~~~peeva~ 280 (391) T 2qap_A 201 ARYAILSQMSGLVPIVEPEVMIDGKHDIDTCQRVSEHVWREVVAALQRHGVIWEGCLLKPNMVVPGAESGKTAAPEQVAH 280 (391) T ss_dssp HHHHHHHHHTTCEEEEEEEECCCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEECCCCCCCCTTSSCCCCHHHHHH T ss_pred HHHHHHHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH T ss_conf 99999999739774235223314667526889999999999998886401434477453245567742122389666223 Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCC-CCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH Q ss_conf 7799985028743862586058888999999899986278-998059985107863788988189988999999999999 Q gi|254780652|r 239 NTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMG-DCPWRLSFSYGRALQESVLRAWNGKQDNVVVAQRVLSHR 317 (339) Q Consensus 239 ~T~~~l~~~vP~~VpgIvFLSGGqs~eeAt~~LnaiNk~~-~~pW~lsfSygRALQ~~~Lk~W~G~~eN~~~aQ~~~~~R 317 (339) ||+++++|||||+||||||||||||++|||.||||||++. +.||.||||||||||+++|++|+|++||++++|++|++| T Consensus 281 ~t~~~l~r~VPpaVpgVvfLSGGqS~eeAt~~LnaiN~~~~~~pw~LsfSfgRALq~s~Lk~w~g~~en~~aaq~al~~r 360 (391) T 2qap_A 281 YTVMTLARTMPAMLPGVMFLSGGLSEVQASEYLNAINNSPLPRPYFLSFSYARALQSSALKAWGGKESGLAAGRRAFLHR 360 (391) T ss_dssp HHHHHHHHHSBTTCCEEEECCTTCCHHHHHHHHHHHTTCCSCCCSEEEEEESHHHHHHHHHHHTTSGGGHHHHHHHHHHH T ss_pred HHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 44443314678667722314687538999999999852357899858998217660679988489716399999999999 Q ss_pred HHHHHHHHCCCCCCCCCCCCC Q ss_conf 974158978974867682125 Q gi|254780652|r 318 AHMNSLATKGCWKKSLENSNG 338 (339) Q Consensus 318 ak~ns~A~~G~y~~~~e~~~~ 338 (339) +++|++|++|+|.+++|.+++ T Consensus 361 a~an~~A~~Gky~~~~~~~~~ 381 (391) T 2qap_A 361 ARMNSMAQLGKYKRSDDDASS 381 (391) T ss_dssp HHHHHHHHTTCCCGGGCC--- T ss_pred HHHHHHHHCCCCCCCCCCCCC T ss_conf 986069867745799986556 No 2 >>2pc4_A 41 kDa antigen, fructose-bisphosphate aldolase; invasion machinery, structural genomics, PSI, protein structure initiative; 2.40A {Plasmodium falciparum} PDB: 2eph_A 1a5c_A (A:) Probab=100.00 E-value=0 Score=1021.92 Aligned_cols=338 Identities=45% Similarity=0.740 Sum_probs=333.1 Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHEECCCCHHEEEEEECCHHHHHHCCCCCCC Q ss_conf 47999999999747990999146887757878857899986788754564100778023046434677884100048874 Q gi|254780652|r 2 MQDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQYISSILLYEETLYQNAQDGTS 81 (339) Q Consensus 2 ~~eL~~~a~~~~~~gKGilAaDeS~gt~~Krl~~igventeenr~~~R~~l~tsp~~~~~IsGvILfeeTl~q~~~~g~~ 81 (339) .+||.+||++|+++||||||||||+|||||||++|||||||||||+||+||||||+|++||||||||||||||+++||++ T Consensus 19 ~~eL~~~a~~i~~~GKGilAaDES~gT~~Krl~~iGventeenr~~yR~~l~ttp~~~~~IsGvILfeeTl~qk~~~g~~ 98 (369) T 2pc4_A 19 AEELATTAQKLVQAGKGILAADESTQTIKKRFDNIKLENTIENRASYRDLLFGTKGLGKFISGAILFEETLFQKNEAGVP 98 (369) T ss_dssp HHHHHHHHHHHTCTTCEEEEECCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHTCTTCTTTEEEEEECHHHHTCBCTTSCB T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHCEEEEECCHHHHHCCCCCCCC T ss_conf 99999999998158986987258898277789865999967889999886117876564446897658776140446787 Q ss_pred HHHHHHHCCCEEEEEECCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCEECCCCCC--CCCHHHHHHHHHHHH Q ss_conf 679899579878994278542178999862157835799999985433955501000233677--874088889989999 Q gi|254780652|r 82 FVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLDVRLKQYKDAGARVAKWRVVLSVSD--VLPSMTVVKANMHIL 159 (339) Q Consensus 82 ~~~~l~~kGIvpgIKVDkGl~~l~g~~~e~~t~GLD~L~eR~~~y~~~Ga~faKwRaVi~i~~--~~Ps~~~I~~na~~l 159 (339) |+++|+++|||||||||||++|++|.++|++|+|||||++||++||+.|||||||||||+|++ ++||..+|.+|+++| T Consensus 99 ~~~ll~~kGIVPgIKVDkGl~~l~g~~ge~~t~GLD~L~~R~~~y~~~Ga~faKwRsVi~i~~~~g~PS~~aI~~na~~l 178 (369) T 2pc4_A 99 MVNLLHNENIIPGIKVDKGLVNIPCTDEEKSTQGLDGLAERCKEYYKAGARFAKWRTVLVIDTAKGKPTDLSIHETAWGL 178 (369) T ss_dssp HHHHHHHHTCEEEEECCCCEEECTTSSSCEEECCCTTHHHHHHHHHHHTCCEEEEEEEECCBGGGTBSCHHHHHHHHHHH T ss_pred HHHHHHHCCCCEEEECCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHCCCEECCHHHHHCCCCCCCCCCHHHHHHHHHHH T ss_conf 01589975981224248641058898544225650349999999997682322023322046455899689999999888 Q ss_pred HHHHHHHHHCCCCCEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHH Q ss_conf 9999999844787201101103775798999999999999999998763853111000025565764443-589889987 Q gi|254780652|r 160 ARYAVLCQNAGLVPIVEPEVLMEGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAP-QVSDEEIAS 238 (339) Q Consensus 160 arYA~i~Q~~GLVPIVEPEVl~dG~H~ie~~~~vte~vL~~lf~~L~~~~V~leg~lLKpnMv~pG~~~~-~~~~eevA~ 238 (339) ||||+|||++||||||||||+|||+|++++|++||++||++||++|.+|+|+|||||||||||+||.+|+ +++|++||. T Consensus 179 aryA~icq~~GLVPIVEPEVl~dg~h~~e~~~~vte~vl~~l~~~l~~~~V~Legtllkpnmv~pg~~~~~~~~~eevA~ 258 (369) T 2pc4_A 179 ARYASICQQNRLVPIVEPEILADGPHSIEVCAVVTQKVLSCVFKALQENGVLLEGALLKPNMVTAGYECTAKTTTQDVGF 258 (369) T ss_dssp HHHHHHHHHTTCEEEEEEEECCCSSCCHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEECCCCCCCCTTCSSCCCHHHHHH T ss_pred HHHHHHHHHCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH T ss_conf 99999999739763445465405851078888999999999999887424545685032333576554766689788632 Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH Q ss_conf 77999850287438625860588889999998999862789980599851078637889881899889999999999999 Q gi|254780652|r 239 NTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRALQESVLRAWNGKQDNVVVAQRVLSHRA 318 (339) Q Consensus 239 ~T~~~l~~~vP~~VpgIvFLSGGqs~eeAt~~LnaiNk~~~~pW~lsfSygRALQ~~~Lk~W~G~~eN~~~aQ~~~~~Ra 318 (339) +|++||+|||||+||||||||||||++|||.||||||+++++||.||||||||||+++|++|+|+++|++++|++|++|| T Consensus 259 ~Tv~~l~~tvppaVpgVvfLSGGqS~eeAt~~Lna~N~~~~~pw~lsfSy~RALq~~~lk~w~g~~en~~aaq~~~~~ra 338 (369) T 2pc4_A 259 LTVRTLRRTVPPALPGVVFLSGGQSEEEASVNLNSINALGPHPWALTFSYGRALQASVLNTWQGKKENVAKAREVLLQRA 338 (369) T ss_dssp HHHHHHHHHCCTTSCEEEECCTTCCHHHHHHHHHHHHHTCCCSSEEEEEESHHHHHHHHHTTTTCTTTHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 32545530489888655525688758899999998740589998589972186607899984787663999999999999 Q ss_pred HHHHHHHCCCCCCCCCCCCCC Q ss_conf 741589789748676821259 Q gi|254780652|r 319 HMNSLATKGCWKKSLENSNGR 339 (339) Q Consensus 319 k~ns~A~~G~y~~~~e~~~~~ 339 (339) ++||+|++|+|.+++|.++++ T Consensus 339 ~ans~A~~G~y~~~~~~~~~~ 359 (369) T 2pc4_A 339 EANSLATYGKYKGGAGGENAG 359 (369) T ss_dssp HHHHHHHHTCCCCCCC----- T ss_pred HHHHHHHCCCCCCCCCCCCCC T ss_conf 972798658457888765445 No 3 >>3kx6_A Fructose-bisphosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, glycolysis, lyase, structural genomics; HET: CIT; 2.10A {Babesia bovis} (A:) Probab=100.00 E-value=0 Score=1013.36 Aligned_cols=337 Identities=47% Similarity=0.752 Sum_probs=332.1 Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHEECCCCHHEEEEEECCHHHHHHCCCCCCC Q ss_conf 47999999999747990999146887757878857899986788754564100778023046434677884100048874 Q gi|254780652|r 2 MQDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQYISSILLYEETLYQNAQDGTS 81 (339) Q Consensus 2 ~~eL~~~a~~~~~~gKGilAaDeS~gt~~Krl~~igventeenr~~~R~~l~tsp~~~~~IsGvILfeeTl~q~~~~g~~ 81 (339) .+||.+||++|+++||||||||||+|||||||++|||||||+|||+||+||||||+|++||||||||||||||++++|++ T Consensus 31 ~~eL~~~a~~i~~~gkGIlAaDES~gT~~Krl~~iGvente~nr~~~R~~l~tsp~~~~~I~GvILfeeTl~q~~~~g~~ 110 (379) T 3kx6_A 31 AKELAENASFIASPGKGILAADESTGTIQKRFDNVGVENTEKNRAEYRSILFTTKGLGKYISGCILFEETLFQQAPNGQN 110 (379) T ss_dssp HHHHHHHHHHHTCTTCEEEEECCCHHHHHHHHHTTTCCCCHHHHHHHHHHHHTCTTGGGTEEEEEECHHHHTCBCTTSCB T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHCEEEEECCHHHHCCCCCCCCC T ss_conf 99999999998179984887357888266678865999866889999886327874551567897546761662569978 Q ss_pred HHHHHHHCCCEEEEEECCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCEECCCCCC--CCCHHHHHHHHHHHH Q ss_conf 679899579878994278542178999862157835799999985433955501000233677--874088889989999 Q gi|254780652|r 82 FVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLDVRLKQYKDAGARVAKWRVVLSVSD--VLPSMTVVKANMHIL 159 (339) Q Consensus 82 ~~~~l~~kGIvpgIKVDkGl~~l~g~~~e~~t~GLD~L~eR~~~y~~~Ga~faKwRaVi~i~~--~~Ps~~~I~~na~~l 159 (339) |+++|+++||||||||||||+|++|.++|++|+|||||++||++||+.|||||||||||+|++ ++||..+|.+|+++| T Consensus 111 ~~~ll~~kGIvPgIKVDkGl~~l~~~~~e~~t~gLdgL~~r~~~y~~~Ga~faKwRsVi~i~~~~g~PS~~~i~~na~~l 190 (379) T 3kx6_A 111 MVDLLRAEGILPGIKVDKGLVTIPNTDEEVSTTGLDGLAERCQKYYNAGARFAKWRAVLSIDVKKNKPSNLSILETAHTL 190 (379) T ss_dssp HHHHHHHHTCEEEEECCCCEEECTTSSSCEEECCCTTHHHHHHHHHHTTCCEEEEEEEECCBTTTTBSCHHHHHHHHHHH T ss_pred HHHHHHHCCCEEEEEECCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHH T ss_conf 79999837976889816886358999755436881679999999987789603321478626778999889999999999 Q ss_pred HHHHHHHHHCCCCCEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHH Q ss_conf 9999999844787201101103775798999999999999999998763853111000025565764443-589889987 Q gi|254780652|r 160 ARYAVLCQNAGLVPIVEPEVLMEGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAP-QVSDEEIAS 238 (339) Q Consensus 160 arYA~i~Q~~GLVPIVEPEVl~dG~H~ie~~~~vte~vL~~lf~~L~~~~V~leg~lLKpnMv~pG~~~~-~~~~eevA~ 238 (339) ||||++||++||||||||||+|||+|++++|++||++||.+||++|.+|+|+|||+|||||||+||.+|+ +++|++||. T Consensus 191 aryA~icq~~GLVPIVEPEVlidg~h~~~~~~~vt~~vl~~~~~~l~~~~V~Leg~LlKpnmv~~G~~~~~~~~peeva~ 270 (379) T 3kx6_A 191 ARYAAICQENGLVPIVEPEILADGDHSIEVCAEVTERVLAAVFKALNDHKVLLEGALLKPNMVTQGVDCKDKPAPQTVGF 270 (379) T ss_dssp HHHHHHHHHTTCEEEEEEEECCCSSCCHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEECCCCCCCCTTCSCCCCHHHHHH T ss_pred HHHHHHHHHCCCCCEECCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH T ss_conf 99999999739863235000158987699999999999999998764424664563325566665521233378778878 Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH Q ss_conf 77999850287438625860588889999998999862789980599851078637889881899889999999999999 Q gi|254780652|r 239 NTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRALQESVLRAWNGKQDNVVVAQRVLSHRA 318 (339) Q Consensus 239 ~T~~~l~~~vP~~VpgIvFLSGGqs~eeAt~~LnaiNk~~~~pW~lsfSygRALQ~~~Lk~W~G~~eN~~~aQ~~~~~Ra 318 (339) ||++||+|||||+||||||||||||++|||.||||||+++++||.||||||||||+++|++|.|+++|+.++|++|++|| T Consensus 271 ~T~~~l~~tvPpaVpgIvfLSGGqSeeeAt~~Lna~N~~~~~pw~LsfSfgRALq~~~lk~w~g~~~n~~~aq~~~i~rA 350 (379) T 3kx6_A 271 LTSRALRRTVPPALPGVMFLSGGQSESMATRHLNEINKCNKHPWSLSFSYGRALQSSVLKTWNGSMSNAAAAQDVLMKLA 350 (379) T ss_dssp HHHHHHHTTCCTTSCEEEECCTTCCHHHHHHHHHHHHHTCCCSSEEEEEESHHHHHHHHHHHTTCGGGHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH T ss_conf 89999975279888869983698689999999999840679997699971496617899984798241999999999999 Q ss_pred HHHHHHHCCCCCCCCCCCCC Q ss_conf 74158978974867682125 Q gi|254780652|r 319 HMNSLATKGCWKKSLENSNG 338 (339) Q Consensus 319 k~ns~A~~G~y~~~~e~~~~ 338 (339) ++||+|++|+|.+++|.++. T Consensus 351 ~~ns~A~~G~y~~~~~~~~~ 370 (379) T 3kx6_A 351 QQNSEASLGSLKTDLSDDGE 370 (379) T ss_dssp HHHHHHTTTCCC-------- T ss_pred HHHHHHHCCCCCCCCCCCCC T ss_conf 86459767766787766665 No 4 >>3bv4_A Fructose-bisphosphate aldolase A; lyase, acetylation, glycolysis, phosphoprotein, schiff base; HET: 13P; 1.70A {Oryctolagus cuniculus} PDB: 1ado_A* 1ewd_A 1zai_A* 1zah_A* 1zaj_A* 1zal_A 2ot0_A 2ot1_A* 2qut_A 2quv_A 3lge_A 3b8d_A 6ald_A* 1ex5_A 1ewe_A 2quu_A 3dfn_A 3dfo_A 3dfp_A 3dfq_A ... (A:) Probab=100.00 E-value=0 Score=1008.78 Aligned_cols=330 Identities=47% Similarity=0.762 Sum_probs=325.2 Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHEECCCC-HHEEEEEECCHHHHHHCCCCCC Q ss_conf 479999999997479909991468877578788578999867887545641007780-2304643467788410004887 Q gi|254780652|r 2 MQDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDA-MQYISSILLYEETLYQNAQDGT 80 (339) Q Consensus 2 ~~eL~~~a~~~~~~gKGilAaDeS~gt~~Krl~~igventeenr~~~R~~l~tsp~~-~~~IsGvILfeeTl~q~~~~g~ 80 (339) -+||..||++|+++||||||||||+|||||||++|||||||||||+||+||||||+| ++||||||||||||||++++|+ T Consensus 9 ~~eL~~~a~~i~~~gKGIlAaDES~gT~~Krl~~iGventeenrr~~R~~l~tsp~f~~~~IsGvILfeeTl~q~~~~g~ 88 (341) T 3bv4_A 9 KKELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNPCIGGVILFHETLYQKADDGR 88 (341) T ss_dssp HHHHHHHHHHHTCTTCEEEEECCCHHHHHHHHHTTTCCCCHHHHHHHHHHHHTCCGGGTTTEEEEEECHHHHTCBCTTSC T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHCCEEEEECCHHHCCCCCCCCC T ss_conf 99999999997379986998447898468889866999857789999999732860320544689810422035177997 Q ss_pred CHHHHHHHCCCEEEEEECCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCEECCCCCCCCCHHHHHHHHHHHHH Q ss_conf 46798995798789942785421789998621578357999999854339555010002336778740888899899999 Q gi|254780652|r 81 SFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLDVRLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHILA 160 (339) Q Consensus 81 ~~~~~l~~kGIvpgIKVDkGl~~l~g~~~e~~t~GLD~L~eR~~~y~~~Ga~faKwRaVi~i~~~~Ps~~~I~~na~~la 160 (339) +|+++|+++|||||||||||++|++|.++|++|+|||||++||++||+.|||||||||||+|++++||..+|.+|++.|| T Consensus 89 ~~~~ll~~~GIvPgIKVDkGl~~l~~~~ge~~t~gLd~L~~r~~~y~~~GarfaKwRsVi~i~~~~ps~~~v~~na~~LA 168 (341) T 3bv4_A 89 PFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLVGLSERCAQYKKDGADFAKWRCVLKIGEHTPSALAIMENANVLA 168 (341) T ss_dssp BHHHHHHTTTCEEEEECCCCEEECTTSSSCEEECCCTTHHHHHHHHHHTTCCEEEEEEEECCBTTBSCHHHHHHHHHHHH T ss_pred CHHHHHHHCCCEEEEEECCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHH T ss_conf 88999997798466883799746689999872378767999999999859984534456523789982899999999999 Q ss_pred HHHHHHHHCCCCCEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHH Q ss_conf 999999844787201101103775798999999999999999998763853111000025565764443-5898899877 Q gi|254780652|r 161 RYAVLCQNAGLVPIVEPEVLMEGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAP-QVSDEEIASN 239 (339) Q Consensus 161 rYA~i~Q~~GLVPIVEPEVl~dG~H~ie~~~~vte~vL~~lf~~L~~~~V~leg~lLKpnMv~pG~~~~-~~~~eevA~~ 239 (339) |||+|||++||||||||||+|||+|++++|++||++||++||++|++|+|+|||+|||||||+||.+|+ +.++++||.+ T Consensus 169 rYA~icq~~GLVPIVEPEVl~dg~h~ie~~~~vte~vl~~v~~~l~~~~V~LeG~lLkpnmv~pg~~~~~~~~~~~vA~~ 248 (341) T 3bv4_A 169 RYASICQQNGIVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLKPNMVTPGHACTQKYSHEEIAMA 248 (341) T ss_dssp HHHHHHHHTTCEEEEEEEECCCSSCCHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEECCCCCCCCTTCSSCCCHHHHHHH T ss_pred HHHHHHHHCCCCEEECCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHH T ss_conf 99999998697234544334789852899999999999999987775477326845136675676435320788999999 Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCC-CCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH Q ss_conf 799985028743862586058888999999899986278-9980599851078637889881899889999999999999 Q gi|254780652|r 240 TIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMG-DCPWRLSFSYGRALQESVLRAWNGKQDNVVVAQRVLSHRA 318 (339) Q Consensus 240 T~~~l~~~vP~~VpgIvFLSGGqs~eeAt~~LnaiNk~~-~~pW~lsfSygRALQ~~~Lk~W~G~~eN~~~aQ~~~~~Ra 318 (339) |++||+|||||+||||||||||||++|||.||||||+++ ..||.||||||||||+++|++|+||+||++++|++|++|| T Consensus 249 Tv~~l~rtvp~aVpgVvfLSGGqS~eeAt~~LnamN~~~~~~pw~lsfSfgRALq~~~Lk~w~g~~en~~aaq~a~~~ra 328 (341) T 3bv4_A 249 TVTALRRTVPPAVTGVTFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGRALQASALKAWGGKKENLKAAQEEYVKRA 328 (341) T ss_dssp HHHHHHTTSCTTSCEEEECCTTCCHHHHHHHHHHHHHCCSCCCSEEEEEESHHHHHHHHHHHTTCGGGHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 99998604896688688578999989999999987057778997467854886517899884797363999999999999 Q ss_pred HHHHHHHCCCCCC Q ss_conf 7415897897486 Q gi|254780652|r 319 HMNSLATKGCWKK 331 (339) Q Consensus 319 k~ns~A~~G~y~~ 331 (339) ++||+|++|+|+. T Consensus 329 ~~ns~A~~G~y~a 341 (341) T 3bv4_A 329 LANSLACQGKYTS 341 (341) T ss_dssp HHHHHHTTTCCCC T ss_pred HHHHHHHCCCCCC T ss_conf 8636987598679 No 5 >>2iqt_A Fructose-bisphosphate aldolase class 1; TIM berrel, structural genomics, PSI-2, protein structure initiative; 2.46A {Porphyromonas gingivalis W83} (A:) Probab=100.00 E-value=0 Score=814.12 Aligned_cols=284 Identities=19% Similarity=0.157 Sum_probs=269.7 Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCHHHH--------HHHHHHHEECCCC-HHEEEEEECCHHHH Q ss_conf 47999999999747990999146887757878857899986788--------7545641007780-23046434677884 Q gi|254780652|r 2 MQDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSR--------RDYREMLFRAKDA-MQYISSILLYEETL 72 (339) Q Consensus 2 ~~eL~~~a~~~~~~gKGilAaDeS~gt~~Krl~~igventeenr--------~~~R~~l~tsp~~-~~~IsGvILfeeTl 72 (339) |+||..|+++++++| ||||+|||+|||||||++|||||||+|| |+||+||||||+| ++|||||||||||| T Consensus 3 ~~el~~~a~~~~~~G-gIlA~DES~gT~~Krl~~iGvente~nr~~~mf~~~~~~R~~l~t~p~~~~~~I~GaILfeeTl 81 (296) T 2iqt_A 3 AXNKEQLQQXRQAPG-FVGALDQSGGSTPKALKAYGIQPDAYQSEEEXFDLIHQXRTRXITSPAFATGKIIGVILFERTX 81 (296) T ss_dssp HHHHHHHHHHHHCCS-EEEEECCCGGGHHHHHHHTTCCGGGCCSHHHHHHHHHHHHHHHHHSGGGGSSSEEEEEECHHHH T ss_pred CCCHHHHHHHHCCCC-CEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHH T ss_conf 338999999845898-3897417888357789975998765677788999999999998568530025531444216762 Q ss_pred HHCCCCCCCHHHHHHHCCCEEEEEECCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCEECCCCCCCCCHHHHH Q ss_conf 10004887467989957987899427854217899986215783579999998543395550100023367787408888 Q gi|254780652|r 73 YQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLDVRLKQYKDAGARVAKWRVVLSVSDVLPSMTVV 152 (339) Q Consensus 73 ~q~~~~g~~~~~~l~~kGIvpgIKVDkGl~~l~g~~~e~~t~GLD~L~eR~~~y~~~Ga~faKwRaVi~i~~~~Ps~~~I 152 (339) ||++++|++|+++|+++||||||||||||+|++ +||++|+|||||++||++||+.|||||||||||+| ||..+| T Consensus 82 ~q~~~~g~~~~~ll~~kgIvpgIKVDkGl~~l~--~ge~~t~gLdgL~~r~~~y~~~Ga~faKwRsVi~i----ps~~~I 155 (296) T 2iqt_A 82 RGKIEGXPTADFLWEKRHIVPFLKVDKGLQDEA--NGVQLXKPFPELGKLCEEAVGYHVFGTKXRSVIKQ----ANEQGI 155 (296) T ss_dssp TSEETTEEHHHHHHHHHCCEEEEECCCCBCCCB--TTEECBCCCTTHHHHHHHHHHTTCCEEEEEEEECS----CCHHHH T ss_pred CCCCCCCCCHHHHHHCCCCCEEEECCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCC----CCCCCH T ss_conf 762689944899986478531342356778754--67551135345999999999860665124412036----763146 Q ss_pred HHHHHHHHHHHHHHHHCCCCCEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 99899999999999844787201101103775798999999999999999998763853111000025565764443589 Q gi|254780652|r 153 KANMHILARYAVLCQNAGLVPIVEPEVLMEGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAPQVS 232 (339) Q Consensus 153 ~~na~~larYA~i~Q~~GLVPIVEPEVl~dG~H~ie~~~~vte~vL~~lf~~L~~~~V~leg~lLKpnMv~pG~~~~~~~ 232 (339) .+|+++|||||++||++||||||||||+|||+|++++|+.|+++||+.+ +|++||+|||||||+||.. T Consensus 156 ~~na~~la~yA~i~q~~GLVPIVEPEVlidg~h~~e~~~~v~~~vl~~~-------~~~~egvlLK~smv~~g~~----- 223 (296) T 2iqt_A 156 RDIVEQQFQWGKEILSHGLVPILEPEVDIHCPEKAKAEEILKRELLAQL-------DKXTEPVXLKITIPTVDNF----- 223 (296) T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEEEECTTCTTHHHHHHHHHHHHHHHH-------HHCSSCEEEEEECCSSTTT----- T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHH-------CCCCCCCEEEECCCCCCCC----- T ss_conf 9999998899999996597024445434566314999999999999984-------7545784563012556887----- Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHH Q ss_conf 88998777999850287438625860588889999998999862789980599851078637889881899889999999 Q gi|254780652|r 233 DEEIASNTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRALQESVLRAWNGKQDNVVVAQR 312 (339) Q Consensus 233 ~eevA~~T~~~l~~~vP~~VpgIvFLSGGqs~eeAt~~LnaiNk~~~~pW~lsfSygRALQ~~~Lk~W~G~~eN~~~aQ~ 312 (339) |..++|||+||||||||||||++|||.|||+ ||.|||||||||| ++|++|+||+||.++ T Consensus 224 ----------~~~~~vppaV~gVvfLSGGqS~eeAt~~Ln~-------pw~lsfSf~RALq-~~L~~w~g~~e~~~~--- 282 (296) T 2iqt_A 224 ----------YKEIIEHPXXLRVVALSGGYSREQANELLSR-------NHGVIASFSRALV-EGLSARQTDAEFNAX--- 282 (296) T ss_dssp ----------THHHHTSTTEEEEEEECTTCCHHHHHHHHTT-------STTCEEEESHHHH-TTCCTTSCHHHHHHH--- T ss_pred ----------CHHHCCCCCCCEEEECCCCCCHHHHHHHHCC-------CCCCEEEHHHHHH-HHHCCCCCHHHHHHH--- T ss_conf ----------5311388667603336887788888534248-------8641545699877-574236588999999--- Q ss_pred HHHHHHHHHHHHHC Q ss_conf 99999974158978 Q gi|254780652|r 313 VLSHRAHMNSLATK 326 (339) Q Consensus 313 ~~~~Rak~ns~A~~ 326 (339) +.+|+++|++|+. T Consensus 283 -~~~ra~~n~~Asl 295 (296) T 2iqt_A 283 -LEASIEDVYQASI 295 (296) T ss_dssp -HHHHHHHHHHHHH T ss_pred -HHHHHHHHHHHHC T ss_conf -9999999998655 No 6 >>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolase, D-tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3jrk_A (A:) Probab=100.00 E-value=6.6e-40 Score=280.73 Aligned_cols=287 Identities=11% Similarity=0.017 Sum_probs=244.6 Q ss_pred ECCCCCCHHH--HHHHCCCCCCH------HHHHHHHHHHEECCCCHHEEEEEECCHHHHHHCCCCCCCHH---------H Q ss_conf 1468877578--78857899986------78875456410077802304643467788410004887467---------9 Q gi|254780652|r 22 ADESNATIQK--RFKAIHLESTE------NSRRDYREMLFRAKDAMQYISSILLYEETLYQNAQDGTSFV---------D 84 (339) Q Consensus 22 aDeS~gt~~K--rl~~igvente------enr~~~R~~l~tsp~~~~~IsGvILfeeTl~q~~~~g~~~~---------~ 84 (339) +|||+.|++| ||..+..+|.+ ++|..||+++|.++....+|+|+++|++|++|...+|...+ . T Consensus 1 ~de~~~~~gk~~Rl~ri~~~~g~~~ilA~Dhr~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~vl~~~g~~~~~ 80 (332) T 3iv3_A 1 SNAXILSQQKYNYLAKVSDSNGVISALAFDQRGALKCLXAQYQXKEPTVAQXEELKVLVSEELTPYASSILLDPEYGLPA 80 (332) T ss_dssp ---CEECHHHHHHHHHTSCTTSCEEEEEECCSHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHGGGSSEEEECTTTCHHH T ss_pred CCCCEECHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHH T ss_conf 99754249999999997498898899982671799999998389987266899999999997047898899667761788 Q ss_pred HHHHCCCEEEEEECCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCEECCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 89957987899427854217899986215783579999998543395550100023367787408888998999999999 Q gi|254780652|r 85 LISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLDVRLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYAV 164 (339) Q Consensus 85 ~l~~kGIvpgIKVDkGl~~l~g~~~e~~t~GLD~L~eR~~~y~~~Ga~faKwRaVi~i~~~~Ps~~~I~~na~~larYA~ 164 (339) .....+-++.+.+..+..++++..++..+++++ .++.+++.+||+|.||+..+.+++..|.. ..+...++||+. T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~a~~~GAdavk~l~~~~~d~~~~~~---~~~~~~la~~~~ 154 (332) T 3iv3_A 81 AQARDREAGLLLAYEKTGYDANTTSRLPDCLVD---WSIKRLKEAGADAVKFLLYYDVDGDPQVN---VQKQAYIERIGS 154 (332) T ss_dssp HHTSCTTCEEEEECBCCCCCTTSSCCCCCBCTT---CCHHHHHHTTCSEEEEEEEECTTSCHHHH---HHHHHHHHHHHH T ss_pred HHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCC---CCHHHHHHCCCCEEEEEEECCCCCCHHHH---HHHHHHHHHHHH T ss_conf 873267876799985577766777766532346---78999974456736899854799648999---999999999999 Q ss_pred HHHHCCCCCEECHHHCCCCCCCH--HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHH Q ss_conf 99844787201101103775798--99999999999999999876385311100002556576444-3589889987779 Q gi|254780652|r 165 LCQNAGLVPIVEPEVLMEGDHTI--ERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSA-PQVSDEEIASNTI 241 (339) Q Consensus 165 i~Q~~GLVPIVEPEVl~dG~H~i--e~~~~vte~vL~~lf~~L~~~~V~leg~lLKpnMv~pG~~~-~~~~~eevA~~T~ 241 (339) .||++||++|+||.+..++.|+. +.+.+++.+++...|+.+....+..+.+-+|++|..+|..+ .+.++++++..|+ T Consensus 155 ~c~~~glp~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~a~elgaD~~Kl~~p~~~~~~~~~~~~~~~~~a~~~~ 234 (332) T 3iv3_A 155 ECQAEDIPFFLEILTYDETISNNSSVEFAKVKVHKVNDAXKVFSAERFGIDVLKVEVPVNXVYVEGFAEGEVVYSKEEAA 234 (332) T ss_dssp HHHHHTCCEEEEEEECBTTBSCTTSHHHHTTHHHHHHHHHHHHTSGGGCCSEEEECCSSCGGGBTTTCSSCCCBCHHHHH T ss_pred HHHHCCCCEEEEEECCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHCCCCCHHHCHHHHH T ss_conf 99976998599984157666665326665206699999999997367699889813888766642023210010248899 Q ss_pred HHHHHCCCCCCCEEEEECCCCCHHHHHHHHH-HHHCCCCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH Q ss_conf 9985028743862586058888999999899-98627899805998510786378898818998899999999999997 Q gi|254780652|r 242 KIFKRVVPCAVQGIAFLSGGQSEQDATARLS-AMNSMGDCPWRLSFSYGRALQESVLRAWNGKQDNVVVAQRVLSHRAH 319 (339) Q Consensus 242 ~~l~~~vP~~VpgIvFLSGGqs~eeAt~~Ln-aiNk~~~~pW~lsfSygRALQ~~~Lk~W~G~~eN~~~aQ~~~~~Rak 319 (339) +++++.|++.+++|||||||+++++....++ ||+. .||...|+|||+++++++.+|-.+.. ..++..+..++. T Consensus 235 ~~~~~~v~~~~~pvviLgGg~~~e~~~~~~~~a~~~---ga~~~G~~~GR~i~q~~~~~~~~~~~--~~~v~~~~~~a~ 308 (332) T 3iv3_A 235 QAFREQEASTDLPYIYLSAGVSAELFQETLVFAHKA---GAKFNGVLCGRATWAGSVQVYXEEGK--EAARQWLRTSGL 308 (332) T ss_dssp HHHHHHHHTCSSCEEEECTTCCHHHHHHHHHHHHHH---TCCCCEEEECHHHHTTHHHHHHHHCH--HHHHHHHTTHHH T ss_pred HHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHC---CCCCEEEEECHHHHHHHHHHHHHCCH--HHHHHHHHHHHH T ss_conf 999999724899889983998989999999999980---99964898154764868999984165--889999999999 No 7 >>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} (A:) Probab=90.61 E-value=1.3 Score=24.06 Aligned_cols=250 Identities=17% Similarity=0.147 Sum_probs=125.7 Q ss_pred HCCCEEE-EECCCCCCHHHHHHHCCCCCC-HHHHHHHHHHHEECCCCHHEEEEEECCHHHHHHCCCCCCCHHHHHHHCC- Q ss_conf 4799099-914688775787885789998-6788754564100778023046434677884100048874679899579- Q gi|254780652|r 14 QAGKGIL-AADESNATIQKRFKAIHLEST-ENSRRDYREMLFRAKDAMQYISSILLYEETLYQNAQDGTSFVDLISSSG- 90 (339) Q Consensus 14 ~~gKGil-AaDeS~gt~~Krl~~igvent-eenr~~~R~~l~tsp~~~~~IsGvILfeeTl~q~~~~g~~~~~~l~~kG- 90 (339) ..||.++ |.||-..-..+-+..-|.... .+...+.++++-.+ ...+..|+.+...-.. +....+...+ T Consensus 14 ~~g~~~~lA~Dhr~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a--~~~~~~~v~v~~~~~~-------~~~~~~~~~~~ 84 (304) T 1to3_A 14 ASGGFAXLAVDQREAXRLXFAAAGAKTPVADSVLTDFKVNAAKI--LSPYASAVLLDQQFCY-------RQAVEQNAVAK 84 (304) T ss_dssp TTSCEEEEECCCCHHHHHHHHHTTCCSSCCHHHHHHHHHHHHHH--HGGGCSEEEECTTTTH-------HHHHHTTCSCT T ss_pred CCCCEEEEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH--HHCCCCEEEECHHHHH-------HHHHHCCCCCC T ss_conf 98988999666738999999984688888421689999999986--2055855677567768-------88874003478 Q ss_pred -CEEEEEECCCEEE-CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf -8789942785421-78999862157835799999985433955501000233677874088889989999999999984 Q gi|254780652|r 91 -VLVGIKVDRGLKP-YPLYPGEHITVGLDDLDVRLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYAVLCQN 168 (339) Q Consensus 91 -IvpgIKVDkGl~~-l~g~~~e~~t~GLD~L~eR~~~y~~~Ga~faKwRaVi~i~~~~Ps~~~I~~na~~larYA~i~Q~ 168 (339) +.--|+++.+... ++ .+...++-.. .-..++...||..-|.-.-+.-++ + -..+...+.+....|.. T Consensus 85 ~v~~~i~~~~~~~~~~~--~g~~~~~~~~---~~ve~a~~~GAd~v~~~~~~g~~~--~----~~~~~~~i~~v~~~~~~ 153 (304) T 1to3_A 85 SCAXIVAADDFIPGNGI--PVDNVVLDKK---INAQAVKRDGAKALKLLVLWRSDE--D----AQQRLNXVKEFNELCHS 153 (304) T ss_dssp TSEEEEECEEEEEETTE--EEEEEEECSS---CCHHHHHHTTCCEEEEEEEECTTS--C----HHHHHHHHHHHHHHHHT T ss_pred CCEEEEEECCCCCCCCC--CCCCCCCCCC---CCHHHHHHCCCCEEEEEEECCCCC--C----HHHHHHHHHHHHHHHHH T ss_conf 80699984576468887--6443244455---689999863888899986248765--6----99999999999999987 Q ss_pred CCCCCEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC Q ss_conf 47872011011037757989999999999999999987638531110000255657644435898899877799985028 Q gi|254780652|r 169 AGLVPIVEPEVLMEGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAPQVSDEEIASNTIKIFKRVV 248 (339) Q Consensus 169 ~GLVPIVEPEVl~dG~H~ie~~~~vte~vL~~lf~~L~~~~V~leg~lLKpnMv~pG~~~~~~~~eevA~~T~~~l~~~v 248 (339) +|+-=|+|+=+.-..-.+- +.+........+...+.++++ +|.+.. +. ++....+ .+..+++.+ T Consensus 154 ~g~~vile~i~~~~~~~d~----~~~~~~i~~a~~~a~e~GaD~----iKt~~~--~~--~~~~~~~----~v~~~~~~~ 217 (304) T 1to3_A 154 NGLLSIIEPVVRPPRCGDK----FDREQAIIDAAKELGDSGADL----YKVEXP--LY--GKGARSD----LLTASQRLN 217 (304) T ss_dssp TTCEEEEEEEECCCSSCSC----CCHHHHHHHHHHHHTTSSCSE----EEECCG--GG--GCSCHHH----HHHHHHHHH T ss_pred CCCCEEEEEECCCCCCCCC----CCHHHHHHHHHHHHHHCCCEE----EEEECC--CC--CHHHHHH----HHHHHHHHH T ss_conf 3997389873147776765----540889999999876439769----994078--76--0456678----999999987 Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHCCC Q ss_conf 7438625860588889999998999862789980599851078637889881899 Q gi|254780652|r 249 PCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRALQESVLRAWNGK 303 (339) Q Consensus 249 P~~VpgIvFLSGGqs~eeAt~~LnaiNk~~~~pW~lsfSygRALQ~~~Lk~W~G~ 303 (339) +..-.+|+.+|||.|.+++-..+.+....+-. -|..||++=++.+..|.-. T Consensus 218 ~~~~~pv~vaGG~~~~~~~~~~i~~a~~~Ga~----G~~~GR~i~~~~~~~~~a~ 268 (304) T 1to3_A 218 GHINXPWVILSSGVDEKLFPRAVRVAXEAGAS----GFLAGRAVWSSVIGLPDTE 268 (304) T ss_dssp HTCCSCEEECCTTSCTTTHHHHHHHHHHTTCC----EEEESHHHHGGGTTCSCHH T ss_pred HCCCCCEEEEECCCCHHHHHHHHHHHHHCCCE----EEEECHHHHHCCCCCCHHH T ss_conf 25899689992898989999999999967993----9985636434822561199 No 8 >>3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum} (A:) Probab=63.95 E-value=10 Score=18.17 Aligned_cols=136 Identities=16% Similarity=0.083 Sum_probs=75.5 Q ss_pred HHHHHCCCEEECCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHC------CCCCCCHHHHHHHHHHH Q ss_conf 985433955501000233677874088889989999999999984478720110110------37757989999999999 Q gi|254780652|r 124 KQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEVL------MEGDHTIERCAEVTEFV 197 (339) Q Consensus 124 ~~y~~~Ga~faKwRaVi~i~~~~Ps~~~I~~na~~larYA~i~Q~~GLVPIVEPEVl------~dG~H~ie~~~~vte~v 197 (339) .+...+||.+.|--.-+.-+ .|.+ ..+...+++...-|++.|+-=++||=+. .+.+.+.+ . T Consensus 135 e~a~~~GAdaVk~lv~~g~d--d~~e---~~ql~~l~~v~~~~~~~glp~l~E~l~~~p~g~~~~~~~~p~--------~ 201 (307) T 3fok_A 135 SSXVDRGVDFAKTLVRINLS--DAGT---APTLEATAHAVNEAAAAQLPIXLEPFXSNWVNGKVVNDLSTD--------A 201 (307) T ss_dssp HHHHHHTCCEEEEEEEECTT--CTTH---HHHHHHHHHHHHHHHHTTCCEEEEEEEEEEETTEEEECCSHH--------H T ss_pred HHHHHCCCCEEEEEEEECCC--CCCH---HHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHH--------H T ss_conf 99997589978899874799--8564---999999999999999769966999875125776566777889--------9 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHH--HHHHHHHHHH Q ss_conf 99999998763853111000025565764443589889987779998502874386258605888899--9999899986 Q gi|254780652|r 198 LRTLFNELYTMRVCFEGLVLKSNMILPGKSAPQVSDEEIASNTIKIFKRVVPCAVQGIAFLSGGQSEQ--DATARLSAMN 275 (339) Q Consensus 198 L~~lf~~L~~~~V~leg~lLKpnMv~pG~~~~~~~~eevA~~T~~~l~~~vP~~VpgIvFLSGGqs~e--eAt~~LnaiN 275 (339) +....+...+.++++ +|..++....++ .+.|.. ..-..|+.|+||.+.. +.-..+. T Consensus 202 i~~a~r~~~elGaDi----~K~~~p~~~~~~----~~~v~~-----------~~~~pvvilGG~~~~d~~~~l~~~~--- 259 (307) T 3fok_A 202 VIQSVAIAAGLGNDS----SYTWXKLPVVEE----XERVXE-----------STTXPTLLLGGEGGNDPDATFASWE--- 259 (307) T ss_dssp HHHHHHHHHTCSSCC----SSEEEEEECCTT----HHHHGG-----------GCSSCEEEECCSCC--CHHHHHHHH--- T ss_pred HHHHHHHHHHHCCCE----EEECCCCCCHHH----HHHHHH-----------HCCCCEEEECCCCCCCHHHHHHHHH--- T ss_conf 999999999968877----861489980778----999998-----------0899789967998999999999999--- Q ss_pred CCCCCCCEEEEEHHHHHHH Q ss_conf 2789980599851078637 Q gi|254780652|r 276 SMGDCPWRLSFSYGRALQE 294 (339) Q Consensus 276 k~~~~pW~lsfSygRALQ~ 294 (339) ..-..+-.--|-+||.+-+ T Consensus 260 ~A~~~~Ga~G~~~GRniwq 278 (307) T 3fok_A 260 HALTLPGVRGLTVGRTLLY 278 (307) T ss_dssp HHTTSTTEEEEEECTTTSS T ss_pred HHHHHCCCEEEEECCCCCC T ss_conf 9998579828986701267 No 9 >>3ju2_A Uncharacterized protein SMC04130; structural genomics, PSI-2, TIM barrel protein, protein structure initiative, Zn binding domain; 1.80A {Sinorhizobium meliloti} (A:) Probab=60.14 E-value=12 Score=17.73 Aligned_cols=95 Identities=12% Similarity=0.044 Sum_probs=70.3 Q ss_pred CHHHHHHHCCCEEEEEECCCEEE--CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCEECCCCCCCCCHHHHHHHHHHH Q ss_conf 46798995798789942785421--7899986215783579999998543395550100023367787408888998999 Q gi|254780652|r 81 SFVDLISSSGVLVGIKVDRGLKP--YPLYPGEHITVGLDDLDVRLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHI 158 (339) Q Consensus 81 ~~~~~l~~kGIvpgIKVDkGl~~--l~g~~~e~~t~GLD~L~eR~~~y~~~Ga~faKwRaVi~i~~~~Ps~~~I~~na~~ 158 (339) .+.+.+.+.||- +..--.+ +...+.+.....++.+..-+.-...+|+....+.....-....+++......+.. T Consensus 50 ~~~~~l~~~gi~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 125 (284) T 3ju2_A 50 EAGRIVRANGLK----LTGLCRGGFFPAPDASGREKAIDDNRRAVDEAAELGADCLVLVAGGLPGGSKNIDAARRMVVEG 125 (284) T ss_dssp HHHHHHHHTTCE----ESCEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTBSCEEEECBCCCTTCCCHHHHHHHHHHH T ss_pred HHHHHHHHCCCE----EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 999999970986----8883577666799989999999999999899999689842133310246789999999999999 Q ss_pred HHHHHHHHHHCCCCCEECHHH Q ss_conf 999999998447872011011 Q gi|254780652|r 159 LARYAVLCQNAGLVPIVEPEV 179 (339) Q Consensus 159 larYA~i~Q~~GLVPIVEPEV 179 (339) +.+.+.++.+.|+.-.+||.- T Consensus 126 ~~~l~~~a~~~gi~l~iE~~~ 146 (284) T 3ju2_A 126 IAAVLPHARAAGVPLAIEPLH 146 (284) T ss_dssp HHHHHHHHHHHTCCEEECCCC T ss_pred HHHHHHHHHHCCEEEEECCCC T ss_conf 999999987504001103565 No 10 >>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic acid, AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} (A:214-513) Probab=51.06 E-value=17 Score=16.78 Aligned_cols=18 Identities=11% Similarity=0.169 Sum_probs=6.8 Q ss_pred HHHH-HHCCCEEEEEECCC Q ss_conf 7989-95798789942785 Q gi|254780652|r 83 VDLI-SSSGVLVGIKVDRG 100 (339) Q Consensus 83 ~~~l-~~kGIvpgIKVDkG 100 (339) ..++ +..+-+..+-+|.+ T Consensus 45 a~ll~~~~~~~~~~t~~~~ 63 (300) T 1jgt_A 45 AACAHRAAGELDTVSMGTD 63 (300) T ss_dssp HHHHHHHHSSCEEEEEECS T ss_pred HHHHHHCCCCCCEEECCCC T ss_conf 9987630344323522444 No 11 >>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site, oxidoreductase; 1.60A {Paracoccus denitrificans} (A:1-44,A:82-133,A:444-462) Probab=44.99 E-value=9.2 Score=18.51 Aligned_cols=12 Identities=42% Similarity=0.476 Sum_probs=9.2 Q ss_pred EEEEECCCCCHH Q ss_conf 258605888899 Q gi|254780652|r 254 GIAFLSGGQSEQ 265 (339) Q Consensus 254 gIvFLSGGqs~e 265 (339) =.+|+|||||-+ T Consensus 15 ~y~F~SgG~sGq 26 (115) T 1fwx_A 15 YYGFWSSGQSGE 26 (115) T ss_dssp EEEEECCBTTCE T ss_pred EEEEECCCCCCE T ss_conf 467742675531 No 12 >>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition, fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis} PDB: 2bkv_A* (A:) Probab=41.71 E-value=24 Score=15.85 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=14.1 Q ss_pred CEEEEECCCCCHHHHHHHHHH Q ss_conf 625860588889999998999 Q gi|254780652|r 253 QGIAFLSGGQSEQDATARLSA 273 (339) Q Consensus 253 pgIvFLSGGqs~eeAt~~Lna 273 (339) ..|+|+..|..-.++-.+.-. T Consensus 191 ~~v~~~~~G~~K~~~v~~~l~ 211 (242) T 2bkx_A 191 KRILLLISGKSKAEAVRKLLE 211 (242) T ss_dssp SCEEEEECSGGGHHHHHHHHH T ss_pred CEEEEEECCHHHHHHHHHHHH T ss_conf 316999768799999999982 No 13 >>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A* (A:) Probab=38.81 E-value=26 Score=15.56 Aligned_cols=216 Identities=10% Similarity=0.017 Sum_probs=110.2 Q ss_pred CCHHHHHHHCCC-EEEEEECCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCEECCC-----CCCCCCHHHHHH Q ss_conf 746798995798-78994278542178999862157835799999985433955501000233-----677874088889 Q gi|254780652|r 80 TSFVDLISSSGV-LVGIKVDRGLKPYPLYPGEHITVGLDDLDVRLKQYKDAGARVAKWRVVLS-----VSDVLPSMTVVK 153 (339) Q Consensus 80 ~~~~~~l~~kGI-vpgIKVDkGl~~l~g~~~e~~t~GLD~L~eR~~~y~~~Ga~faKwRaVi~-----i~~~~Ps~~~I~ 153 (339) ..+.+.+.+.|+ ++.+-....-..+...+.+..-+.++.+..-+.-...+|+.--..-.... ..........+. T Consensus 50 ~~i~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 129 (290) T 2qul_A 50 RELKAVADDLGLTVMCCIGLKSEYDFASPDKSVRDAGTEYVKRLLDDCHLLGAPVFAGLTFCAWPQSPPLDMKDKRPYVD 129 (290) T ss_dssp HHHHHHHHHHTCEEEEEEEECGGGCTTCSCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEEESSCCCCTTCCCCHHHHH T ss_pred HHHHHHHHHCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHH T ss_conf 99999999859970112144446798998999999999999999999999589568631443223578887435799999 Q ss_pred HHHHHHHHHHHHHHHCCCCCEECHHHCCCCC--CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 9899999999999844787201101103775--79899999999999999999876385311100002556576444358 Q gi|254780652|r 154 ANMHILARYAVLCQNAGLVPIVEPEVLMEGD--HTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAPQV 231 (339) Q Consensus 154 ~na~~larYA~i~Q~~GLVPIVEPEVl~dG~--H~ie~~~~vte~vL~~lf~~L~~~~V~leg~lLKpnMv~pG~~~~~~ 231 (339) ..+..|...+.++.+.|+.-.+||.....+. ++.+....+-+ .....+|-+..-+ -++...| . T Consensus 130 ~~~~~l~~~~~~a~~~Gi~~~iE~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~i~~D~--~h~~~~~-----~ 194 (290) T 2qul_A 130 RAIESVRRVIKVAEDYGIIYALEVVNRFEQWLCNDAKEAIAFAD--------AVDSPACKVQLDT--FHMNIEE-----T 194 (290) T ss_dssp HHHHHHHTTHHHHHHHTCEEEEECCCTTTCSSCCSHHHHHHHHH--------HHCCTTEEEEEEH--HHHHHHC-----S T ss_pred HHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHH--------HCCCCCCCCCCCC--HHHHHCC-----C T ss_conf 99999999876677625314311357655655587899866554--------2168642223442--6888739-----9 Q ss_pred CHHHHHHHHHHHHHHCCCCCCCE-----EEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHH--HHHHHHCCCH Q ss_conf 98899877799985028743862-----5860588889999998999862789980599851078637--8898818998 Q gi|254780652|r 232 SDEEIASNTIKIFKRVVPCAVQG-----IAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRALQE--SVLRAWNGKQ 304 (339) Q Consensus 232 ~~eevA~~T~~~l~~~vP~~Vpg-----IvFLSGGqs~eeAt~~LnaiNk~~~~pW~lsfSygRALQ~--~~Lk~W~G~~ 304 (339) ++.+ +.+.+.+.+.. .-++.-|+...+-..-+.++...+-.+|-..=.+.+.... ..+..|..-- T Consensus 195 ~~~~--------~l~~~~~~i~~iHi~D~~~~~~G~G~id~~~i~~~L~~~g~~g~~~lE~~~~~~~~~~~~~~~~~~~~ 266 (290) T 2qul_A 195 SFRD--------AILACKGKMGHFHLGEANRLPPGEGRLPWDEIFGALKEIGYDGTIVMEPFMRKGGSVSRAVGVWRDMS 266 (290) T ss_dssp CHHH--------HHHHTTTTEEEEEECCTTSCCTTSSCSCHHHHHHHHHHTTCCSCEEECCCCCCSSHHHHHTTCCSCCS T ss_pred CHHH--------HHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHC T ss_conf 9899--------87641570899996248889999976199999999998499748999868888737778888876402 Q ss_pred HH-HHHHHHHHHHHH Q ss_conf 89-999999999999 Q gi|254780652|r 305 DN-VVVAQRVLSHRA 318 (339) Q Consensus 305 eN-~~~aQ~~~~~Ra 318 (339) +. ......++..|+ T Consensus 267 ~~~~~~~~~~~~~~~ 281 (290) T 2qul_A 267 NGATDEEMDERARRS 281 (290) T ss_dssp TTCCHHHHHHHHHHH T ss_pred CCCCCCCHHHHHHHH T ss_conf 133433799999999 No 14 >>3ief_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious diseases; 2.50A {Bartonella henselae} (A:169-233) Probab=37.26 E-value=28 Score=15.40 Aligned_cols=28 Identities=21% Similarity=0.063 Sum_probs=19.8 Q ss_pred CHHHCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 1011037757989999999999999999 Q gi|254780652|r 176 EPEVLMEGDHTIERCAEVTEFVLRTLFN 203 (339) Q Consensus 176 EPEVl~dG~H~ie~~~~vte~vL~~lf~ 203 (339) =||||+.|+|..=..+.....+....+. T Consensus 23 VP~vLlsGnH~~I~~wr~~~sl~~T~~~ 50 (65) T 3ief_A 23 IPPVLTSGHHKAIANWRQQQAESLTRQR 50 (65) T ss_dssp CCGGGGSSCHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 8966607888999999999999999877 No 15 >>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} (A:1-171,A:315-369) Probab=34.89 E-value=30 Score=15.16 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=30.8 Q ss_pred ECCEECCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHCCCCCEECH Q ss_conf 0100023367787408-8889989999999999984478720110 Q gi|254780652|r 134 AKWRVVLSVSDVLPSM-TVVKANMHILARYAVLCQNAGLVPIVEP 177 (339) Q Consensus 134 aKwRaVi~i~~~~Ps~-~~I~~na~~larYA~i~Q~~GLVPIVEP 177 (339) ..++.|++|.+..|.. ..+++..+.|- .|-++++.|.||- T Consensus 155 v~~~~vv~IP~~l~~~~g~~~~~~eml~----f~~~~~i~~~ve~ 195 (226) T 1uuf_A 155 VHERYVLRIRHPQEQLAGGIPETQEMLD----FCAEHGIVADIEM 195 (226) T ss_dssp EEGGGCEECCSCGGGHHCCHHHHHHHHH----HHHHHTCCCCEEE T ss_pred EECCCCCCCCCCCHHHHCCHHHHHHHHH----HHHHCCCCCCEEE T ss_conf 2001333323333045579999999999----9980989877699 No 16 >>1qni_A Nitrous-oxide reductase; oxidoreductase, denitrification, MAD, electron transfer; 2.40A {Pseudomonas nautica} (A:1-123,A:436-452) Probab=34.24 E-value=16 Score=16.97 Aligned_cols=13 Identities=31% Similarity=0.434 Sum_probs=9.6 Q ss_pred EEEEECCCCCHHH Q ss_conf 2586058888999 Q gi|254780652|r 254 GIAFLSGGQSEQD 266 (339) Q Consensus 254 gIvFLSGGqs~ee 266 (339) =.+|.|||||-+- T Consensus 20 yY~F~SGG~SGev 32 (140) T 1qni_A 20 YYGFWSGGHQGEV 32 (140) T ss_dssp EEEEEECBTTCCE T ss_pred EEEEEECCCCCEE T ss_conf 7999407866238 No 17 >>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A* (A:150-226) Probab=32.94 E-value=14 Score=17.35 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=16.4 Q ss_pred HHHHCCCHHHHHHHHHHHHHHHH Q ss_conf 98818998899999999999997 Q gi|254780652|r 297 LRAWNGKQDNVVVAQRVLSHRAH 319 (339) Q Consensus 297 Lk~W~G~~eN~~~aQ~~~~~Rak 319 (339) -|.|+.|.||.++.|+++.|--. T Consensus 15 akswqkkienteqgqkalahvyh 37 (77) T 2vxb_A 15 AKSWQKKIENTEQGQKALAHVYH 37 (77) T ss_dssp ------------CHHHHHHHHHH T ss_pred CCCHHHHHHHHHHCCCEEEEECC T ss_conf 88899999999974980673035 No 18 >>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} (A:666-715) Probab=32.85 E-value=24 Score=15.80 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=18.9 Q ss_pred CCCHHHHHHHHHHHHHCCCEEE Q ss_conf 5783579999998543395550 Q gi|254780652|r 113 TVGLDDLDVRLKQYKDAGARVA 134 (339) Q Consensus 113 t~GLD~L~eR~~~y~~~Ga~fa 134 (339) +.|+|...++|.+|.+.|.+|. T Consensus 12 ~iGl~~iv~~l~~~a~~g~~~~ 33 (50) T 1wdk_A 12 SIGVAEFVALADQYAELGALYH 33 (50) T ss_dssp HHCHHHHHHHHHHTGGGCGGGC T ss_pred HHCHHHHHHHHHHHHHHCCCCC T ss_conf 9799999999999886488789 No 19 >>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, midwest center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str} (A:) Probab=31.78 E-value=18 Score=16.54 Aligned_cols=98 Identities=15% Similarity=0.148 Sum_probs=46.3 Q ss_pred HHCCCCCEECHH---HCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC------------- Q ss_conf 844787201101---1037757989999999999999999987638531110000255657644435------------- Q gi|254780652|r 167 QNAGLVPIVEPE---VLMEGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAPQ------------- 230 (339) Q Consensus 167 Q~~GLVPIVEPE---Vl~dG~H~ie~~~~vte~vL~~lf~~L~~~~V~leg~lLKpnMv~pG~~~~~------------- 230 (339) +++=+=|+=-|+ ..+|+..+.+.|..-.+..+.........++.+ ..++ ..|-.-|+-+.. T Consensus 85 ~~~l~~~~~~~~~~i~~~~~~~~~~~~a~~y~~~~~~~~~~i~~~~~~-Dl~l--lGiG~dGH~AslfP~~~~~~~~~~~ 161 (238) T 1y89_A 85 NALLFSKINXPAQNIHRILGENEPQAEAERFAQAXAHVIPTENGTPVF-DWIL--LGVGADGHTASLFPGQTDYADANLS 161 (238) T ss_dssp HHHTGGGSCCCGGGBCCCCTTSCHHHHHHHHHHHHHHHSCEETTEECC-SEEE--ECCCTTSCBTTBCTTTCCTTCCSSE T ss_pred HHHHHCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC-CEEE--ECCCCCCCEEECCCCCCCCCCCCEE T ss_conf 664302247653321135676674889999999999863431158877-6798--5367888512137997100346415 Q ss_pred ------CCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHH Q ss_conf ------898899877799985028743862586058888999999899 Q gi|254780652|r 231 ------VSDEEIASNTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLS 272 (339) Q Consensus 231 ------~~~eevA~~T~~~l~~~vP~~VpgIvFLSGGqs~eeAt~~Ln 272 (339) ..|.+--..|+.+|.+. -.|+|+.-|..-.++..++- T Consensus 162 ~~~~~~~~p~~riTlg~~~l~~a-----~~i~~~~~G~~Ka~~v~~~l 204 (238) T 1y89_A 162 VVASHPESGQLRVSKTAKVLQAA-----KRISYLVLGAGKAEIVEQIH 204 (238) T ss_dssp EEEECTTTCCEEEEECHHHHHHS-----SEEEEEECSGGGHHHHHHHH T ss_pred EECCCCCCCCCCCCCCHHHHHHH-----CEEEEEECCHHHHHHHHHHH T ss_conf 87158876621004679999720-----96899975868999999998 No 20 >>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} (A:) Probab=31.57 E-value=34 Score=14.81 Aligned_cols=173 Identities=10% Similarity=-0.009 Sum_probs=74.7 Q ss_pred CCCHHHHHHHCCCEEEEEECCCEEE-CCCCCCCCCCCC-HHHHHHHHHHHHHCCCEEECCEECCCCCCCCCHHHHHHHHH Q ss_conf 8746798995798789942785421-789998621578-35799999985433955501000233677874088889989 Q gi|254780652|r 79 GTSFVDLISSSGVLVGIKVDRGLKP-YPLYPGEHITVG-LDDLDVRLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANM 156 (339) Q Consensus 79 g~~~~~~l~~kGIvpgIKVDkGl~~-l~g~~~e~~t~G-LD~L~eR~~~y~~~Ga~faKwRaVi~i~~~~Ps~~~I~~na 156 (339) |..+++.|.++|.-..+=+...-.. ...........+ .++...-... . ...-.||..............+. T Consensus 16 G~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~d~vi~~a~~~~~~~~~~~~~ 88 (206) T 1hdo_A 16 GLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKT--V-----AGQDAVIVLLGTRNDLSPTTVMS 88 (206) T ss_dssp HHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHH--H-----TTCSEEEECCCCTTCCSCCCHHH T ss_pred HHHHHHHHHHCCCEEEEEECCHHHCCCCCCCCEEEEECCCHHHHHHHHH--H-----CCCCEEEEEEECCCCCCCHHHHH T ss_conf 9999999997869899998482545443442001342242015458987--6-----48888999752365544103556 Q ss_pred HHHHHHHHHHHHCCCCCEEC---HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC---------- Q ss_conf 99999999998447872011---01103775798999999999999999998763853111000025565---------- Q gi|254780652|r 157 HILARYAVLCQNAGLVPIVE---PEVLMEGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMIL---------- 223 (339) Q Consensus 157 ~~larYA~i~Q~~GLVPIVE---PEVl~dG~H~ie~~~~vte~vL~~lf~~L~~~~V~leg~lLKpnMv~---------- 223 (339) .........+...+...++- -.+....+.... ...............+..++ ++-+++-|..+. T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~~~~~-~~~~~~~~~~~~e~~~~~~~--~~~~i~R~~~i~g~~~~~~~~~ 165 (206) T 1hdo_A 89 EGARNIVAAMKAHGVDKVVACTSAFLLWDPTKVPP-RLQAVTDDHIRMHKVLRESG--LKYVAVMPPHIGDQPLTGAYTV 165 (206) T ss_dssp HHHHHHHHHHHHHTCCEEEEECCGGGTSCTTCSCG-GGHHHHHHHHHHHHHHHHTC--SEEEEECCSEEECCCCCSCCEE T ss_pred HHHHHHHHHHHHCCCCEEEEEECCEECCCCCCCCC-CHHHHHHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCEEE T ss_conf 78889999999809997999952452168765772-00245789999999999729--9989997875047766673487 Q ss_pred CCCCC---CCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC Q ss_conf 76444---35898899877799985028743862586058888 Q gi|254780652|r 224 PGKSA---PQVSDEEIASNTIKIFKRVVPCAVQGIAFLSGGQS 263 (339) Q Consensus 224 pG~~~---~~~~~eevA~~T~~~l~~~vP~~VpgIvFLSGGqs 263 (339) ++... .-.+.+++|.+.+.++.+ |....+++.++|.+| T Consensus 166 ~~~~~~~~~~i~~~Dva~ai~~~l~~--~~~~g~~~~i~~~~s 206 (206) T 1hdo_A 166 TLDGRGPSRVISKHDLGHFMLRCLTT--DEYDGHSTYPSHQYQ 206 (206) T ss_dssp ESSSCSSCSEEEHHHHHHHHHHTTSC--STTTTCEEEEECCC- T ss_pred ECCCCCCCCEECHHHHHHHHHHHHCC--CCCCCCCCCCCCCCC T ss_conf 31886776808499999999999658--886588778774059 No 21 >>3eb9_A 6-phosphogluconolactonase; catalytic mechanism, pentose phosphate pathway, hydrolase, zinc binding site; HET: FLC; 2.00A {Trypanosoma brucei} PDB: 2j0e_A* 3e7f_A* (A:) Probab=30.66 E-value=35 Score=14.72 Aligned_cols=20 Identities=10% Similarity=0.237 Sum_probs=14.3 Q ss_pred CCEEEEECCCCCHHHHHHHH Q ss_conf 86258605888899999989 Q gi|254780652|r 252 VQGIAFLSGGQSEQDATARL 271 (339) Q Consensus 252 VpgIvFLSGGqs~eeAt~~L 271 (339) .-.|+|+..|..-.++..+. T Consensus 211 a~~i~~~~~G~~K~~~v~~~ 230 (266) T 3eb9_A 211 ARNVIVLATGAEKKWVVDGI 230 (266) T ss_dssp CSEEEEEECCGGGHHHHHHH T ss_pred CCEEEEEECCHHHHHHHHHH T ss_conf 67799997588999999999 No 22 >>1oy5_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, TRMD, tRNA (M1G37) methyltransferase, BSGC structure funded by NIH; 2.60A {Aquifex aeolicus} (A:172-221) Probab=28.09 E-value=22 Score=16.01 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=13.0 Q ss_pred CHHHCCCCCCCHHHHHHHHH Q ss_conf 10110377579899999999 Q gi|254780652|r 176 EPEVLMEGDHTIERCAEVTE 195 (339) Q Consensus 176 EPEVl~dG~H~ie~~~~vte 195 (339) =||||+.|+|..=..+.... T Consensus 22 VP~vLlSGnH~~I~~wr~~~ 41 (50) T 1oy5_A 22 VPEELLSGHHKLIELWKLWH 41 (50) T ss_dssp CCGGGTSCSSSTTTHHHHHH T ss_pred CCHHHCCCCHHHHHHHHHHH T ss_conf 98544079879999999999 No 23 >>2juz_A UPF0352 protein HI0840; homodimer, helix, structural genomics, PSI-2, protein structure initiative; NMR {Haemophilus influenzae} (A:) Probab=27.73 E-value=29 Score=15.23 Aligned_cols=26 Identities=12% Similarity=0.125 Sum_probs=18.4 Q ss_pred HHHHHHHHHHHHHHHHCC--CCCCCCCC Q ss_conf 999999999999987638--53111000 Q gi|254780652|r 192 EVTEFVLRTLFNELYTMR--VCFEGLVL 217 (339) Q Consensus 192 ~vte~vL~~lf~~L~~~~--V~leg~lL 217 (339) +--|.+|.+++..|..|+ ++|..++| T Consensus 10 ~qvE~il~el~~VLeKH~Ap~DLSLMvL 37 (80) T 2juz_A 10 AQLSAIVNDMIAVLEKHKAPVDLSLIAL 37 (80) T ss_dssp HHHHHHHHHHHHHHHHHTCCSHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHH T ss_conf 9999999999999985599941599999 No 24 >>1ual_A TRNA (guanine-N(1)-)-methyltransferase; spout class, TRMD, tRNA(M1G37) methyltransferase, tRNA modification; HET: SAH; 1.80A {Haemophilus influenzae} (A:190-274) Probab=25.94 E-value=42 Score=14.18 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=17.9 Q ss_pred CHHHCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 1011037757989999999999999999 Q gi|254780652|r 176 EPEVLMEGDHTIERCAEVTEFVLRTLFN 203 (339) Q Consensus 176 EPEVl~dG~H~ie~~~~vte~vL~~lf~ 203 (339) =||||+-|+|..=..+...+.+....+. T Consensus 23 VP~vLlSGnH~~I~~WR~~~sl~rT~~~ 50 (85) T 1ual_A 23 VPPVLMSGHHEEIRKWRLKQSLQRTWLR 50 (85) T ss_dssp CCGGGGSCCHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 9952125986999999999999999876 No 25 >>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum} (A:) Probab=24.81 E-value=32 Score=14.98 Aligned_cols=28 Identities=4% Similarity=0.103 Sum_probs=19.7 Q ss_pred EEEEECCCCCCHHHHHHHCCCCCCHHHH Q ss_conf 0999146887757878857899986788 Q gi|254780652|r 18 GILAADESNATIQKRFKAIHLESTENSR 45 (339) Q Consensus 18 GilAaDeS~gt~~Krl~~igventeenr 45 (339) -|...-+++||+++-.+.+|+.-.-+-| T Consensus 38 ~IV~~~DdGgSsg~lr~~~g~~~~gDir 65 (341) T 2p0y_A 38 AVVTVADDGGSSGIIRNYVNVVPPGDIR 65 (341) T ss_dssp EECC----------------------CH T ss_pred EEEECCCCCCCCHHHHHHCCCCCCCHHH T ss_conf 9998874873322389865999998399 No 26 >>2jrx_A UPF0352 protein YEJL; homodimer, alpha helix, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} (A:) Probab=24.65 E-value=31 Score=15.04 Aligned_cols=31 Identities=32% Similarity=0.367 Sum_probs=20.9 Q ss_pred HHHHHHHHHHHHHHHHCC--CCCCCCCCCCCCCC Q ss_conf 999999999999987638--53111000025565 Q gi|254780652|r 192 EVTEFVLRTLFNELYTMR--VCFEGLVLKSNMIL 223 (339) Q Consensus 192 ~vte~vL~~lf~~L~~~~--V~leg~lLKpnMv~ 223 (339) +--|.+|.+++..|..|+ ++|..++| -|||| T Consensus 10 ~qvE~il~eli~VLeKH~Ap~DLSLMvL-GN~vT 42 (83) T 2jrx_A 10 EQVEQLLAELLNVLEKHKAPTDLSLMVL-GNMVT 42 (83) T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHH-HHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHH T ss_conf 9999999999999985599930699999-89999 No 27 >>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} (A:) Probab=23.97 E-value=46 Score=13.95 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=13.9 Q ss_pred CCEEEEECCCCCHHHHHHHH Q ss_conf 86258605888899999989 Q gi|254780652|r 252 VQGIAFLSGGQSEQDATARL 271 (339) Q Consensus 252 VpgIvFLSGGqs~eeAt~~L 271 (339) ...|+|+-.|..-.++...+ T Consensus 196 ak~i~ll~~G~~Ka~av~~~ 215 (289) T 1ne7_A 196 AREVMILITGAHKAFALYKA 215 (289) T ss_dssp SSCEEEEECSGGGHHHHHHH T ss_pred CCEEEEEECCHHHHHHHHHH T ss_conf 45089998487899999999 Done!