RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780652|ref|YP_003065065.1| Fructose-bisphosphate aldolase
[Candidatus Liberibacter asiaticus str. psy62]
(339 letters)
>gnl|CDD|185401 PTZ00019, PTZ00019, fructose-bisphosphate aldolase; Provisional.
Length = 355
Score = 400 bits (1030), Expect = e-112
Identities = 164/324 (50%), Positives = 209/324 (64%), Gaps = 4/324 (1%)
Query: 12 MLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQYISSILLYEET 71
+ GKGILAADES TI+KRF I LE+TE +RR YRE+LF + QYIS ++L+EET
Sbjct: 14 IAAPGKGILAADESTGTIKKRFDPIGLENTEENRRAYRELLFTTEGLEQYISGVILFEET 73
Query: 72 LYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLDVRLKQYKDAGA 131
+YQ A G +FV+L+ G++ GIKVD+GL P GE T GLD L R K+Y AGA
Sbjct: 74 VYQKAPSGKTFVELLKEKGIVPGIKVDKGLVTLPGTDGETSTQGLDGLAERAKKYYKAGA 133
Query: 132 RVAKWRVVLSVSDV--LPSMTVVKANMHILARYAVLCQNAGLVPIVEPEVLMEGDHTIER 189
R AKWR VL + PS ++ N LARYA +CQ GLVPIVEPE+L++G H+IE
Sbjct: 134 RFAKWRAVLKIDPAKGKPSELAIQENAWTLARYAAICQENGLVPIVEPEILIDGSHSIEV 193
Query: 190 CAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAPQ-VSDEEIASNTIKIFKRVV 248
C +VTE VL +F L V EG +LK NM+ PG + +E+A T++ R V
Sbjct: 194 CQKVTEKVLAEVFKALNDHGVLLEGCLLKPNMVTPGSDCGVKATPQEVAFYTVRTLSRTV 253
Query: 249 PCAVQGIAFLSGGQSEQDATARLSAMNSM-GDCPWRLSFSYGRALQESVLRAWNGKQDNV 307
P A+ G+ FLSGGQSE++A+ L+AMN + PW LSFSYGRALQ S L+ W GK +NV
Sbjct: 254 PPALPGVMFLSGGQSEEEASLNLNAMNKLTLPRPWALSFSYGRALQSSALKTWKGKDENV 313
Query: 308 VVAQRVLSHRAHMNSLATKGCWKK 331
AQ+ L HRA NSLA G +K
Sbjct: 314 AAAQKALLHRAKANSLAQLGKYKG 337
>gnl|CDD|178074 PLN02455, PLN02455, fructose-bisphosphate aldolase.
Length = 358
Score = 382 bits (983), Expect = e-107
Identities = 163/316 (51%), Positives = 210/316 (66%), Gaps = 1/316 (0%)
Query: 16 GKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQYISSILLYEETLYQN 75
GKGILAADES TI KR +I++E+ E++R+ RE+LF A A+QY+S ++L+EETLYQ
Sbjct: 23 GKGILAADESTGTIGKRLASINVENVESNRQALRELLFTAPGALQYLSGVILFEETLYQK 82
Query: 76 AQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLDVRLKQYKDAGARVAK 135
DG FVD++ +GVL GIKVD+G GE T GLD L R +Y +AGAR AK
Sbjct: 83 TSDGKPFVDVLKENGVLPGIKVDKGTVELAGTNGETTTQGLDGLGARCAKYYEAGARFAK 142
Query: 136 WRVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEVLMEGDHTIERCAEVTE 195
WR VL + PS ++ N LARYA++CQ GLVPIVEPE+L++G H I++CA VTE
Sbjct: 143 WRAVLKIGPTEPSELAIQENAQGLARYAIICQENGLVPIVEPEILVDGSHDIKKCAAVTE 202
Query: 196 FVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAPQVSDEEIASNTIKIFKRVVPCAVQGI 255
VL + L V EG +LK NM+ PG +P+VS E IA T++ +R VP AV GI
Sbjct: 203 RVLAACYKALNDHHVLLEGTLLKPNMVTPGSDSPKVSPEVIAEYTVRALQRTVPPAVPGI 262
Query: 256 AFLSGGQSEQDATARLSAMNSM-GDCPWRLSFSYGRALQESVLRAWNGKQDNVVVAQRVL 314
FLSGGQSE++AT L+AMN + PW LSFS+GRALQ+S L+AW GK++NV AQ
Sbjct: 263 VFLSGGQSEEEATLNLNAMNKLKTLKPWTLSFSFGRALQQSTLKAWAGKKENVAKAQAAF 322
Query: 315 SHRAHMNSLATKGCWK 330
R NS AT G +K
Sbjct: 323 LVRCKANSEATLGKYK 338
>gnl|CDD|178045 PLN02425, PLN02425, probable fructose-bisphosphate aldolase.
Length = 390
Score = 293 bits (752), Expect = 3e-80
Identities = 156/325 (48%), Positives = 200/325 (61%), Gaps = 3/325 (0%)
Query: 16 GKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQYISSILLYEETLYQN 75
G+GILA DESNAT KR +I L++TE +R+ YR++L +YIS +L+EETLYQ+
Sbjct: 58 GRGILAIDESNATCGKRLASIGLDNTETNRQAYRQLLLTTPGLGEYISGAILFEETLYQS 117
Query: 76 AQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLDVRLKQYKDAGARVAK 135
DG FVD + ++ GIKVD+GL P P E GLD L R +Y GAR AK
Sbjct: 118 TTDGKKFVDCLRDQNIVPGIKVDKGLVPLPGSNNESWCQGLDGLASRSAEYYKQGARFAK 177
Query: 136 WRVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEVLMEGDHTIERCAEVTE 195
WR V+S+ PS VK LARYA + Q+ GLVPIVEPE+L++GDH IER EV E
Sbjct: 178 WRTVVSIP-CGPSALAVKEAAWGLARYAAISQDNGLVPIVEPEILLDGDHPIERTLEVAE 236
Query: 196 FVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAPQ-VSDEEIASNTIKIFKRVVPCAVQG 254
V +F L V FEG++LK +M+ PG + S E IA T+ + +R VP AV G
Sbjct: 237 KVWSEVFFYLAQNNVLFEGILLKPSMVTPGAEHKEKASPETIAKYTLTMLRRRVPPAVPG 296
Query: 255 IAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRALQESVLRAWNGKQDNVVVAQRVL 314
I FLSGGQSE +AT L+AMN + PW +SFSY RALQ SVL+ W G+ +NV AQ+ L
Sbjct: 297 IMFLSGGQSEVEATLNLNAMNQSPN-PWHVSFSYARALQNSVLKTWQGRPENVEAAQKAL 355
Query: 315 SHRAHMNSLATKGCWKKSLENSNGR 339
RA NSLA G + E+ +
Sbjct: 356 LVRAKANSLAQLGRYSAEGESEEAK 380
>gnl|CDD|177872 PLN02227, PLN02227, fructose-bisphosphate aldolase I.
Length = 399
Score = 268 bits (686), Expect = 2e-72
Identities = 151/337 (44%), Positives = 206/337 (61%), Gaps = 3/337 (0%)
Query: 4 DLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQYIS 63
+L + + G GI+A DESNAT KR +I LE+TE +R+ YR +L A QYIS
Sbjct: 55 ELVKTAKTIASPGHGIMAMDESNATCGKRLASIGLENTEANRQAYRTLLVSAPGLGQYIS 114
Query: 64 SILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLDVRL 123
+L+EETLYQ+ DG VD++ ++ GIKVD+GL P E GLD L R
Sbjct: 115 GAILFEETLYQSTTDGKKMVDVLVEQNIVPGIKVDKGLVPLVGSYDESWCQGLDGLASRT 174
Query: 124 KQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEVLMEG 183
Y GAR AKWR V+S+ + PS VK LARYA + Q++GLVPIVEPE++++G
Sbjct: 175 AAYYQQGARFAKWRTVVSIPNG-PSALAVKEAAWGLARYAAISQDSGLVPIVEPEIMLDG 233
Query: 184 DHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAP-QVSDEEIASNTIK 242
+H I+R +V E V +F L V FEG++LK +M+ PG A + + E++AS T+K
Sbjct: 234 EHGIDRTYDVAEKVWAEVFFYLAQNNVMFEGILLKPSMVTPGAEATDRATPEQVASYTLK 293
Query: 243 IFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRALQESVLRAWNG 302
+ + +P AV GI FLSGGQSE +AT L+AMN + PW +SFSY RALQ + L+ W G
Sbjct: 294 LLRNRIPPAVPGIMFLSGGQSELEATLNLNAMNQAPN-PWHVSFSYARALQNTCLKTWGG 352
Query: 303 KQDNVVVAQRVLSHRAHMNSLATKGCWKKSLENSNGR 339
K++NV AQ +L RA NSLA G + E+ +
Sbjct: 353 KEENVKAAQDILLARAKANSLAQLGKYTGEGESEEAK 389
>gnl|CDD|180045 PRK05377, PRK05377, fructose-1,6-bisphosphate aldolase; Reviewed.
Length = 296
Score = 40.2 bits (95), Expect = 7e-04
Identities = 64/245 (26%), Positives = 96/245 (39%), Gaps = 67/245 (27%)
Query: 67 LYEETLYQNAQDGTSFVD-LISSSGVLVGIKVDRGL----------KPYPLYPGEHITVG 115
L+E+T+ + +G D L GV+ +KVD+GL KP P
Sbjct: 74 LFEQTMDREI-EGKPTADYLWEKKGVVPFLKVDKGLAEEANGVQLMKPIP---------N 123
Query: 116 LDDLDVRLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIV 175
LDDL L + + G K R V+ ++ VV + + +L AGLVPI+
Sbjct: 124 LDDL---LDRAVEKGIFGTKMRSVIKEANEQGIAAVVAQQFEVAKQ--IL--AAGLVPII 176
Query: 176 EPEVLMEGDHTIERCAEVTEFVLRTLFNELYTM----RVCFEGLVL--KSNMILPGKSAP 229
EPEV D AE + + +L + +V + L + ++N+ P
Sbjct: 177 EPEV----DINSPDKAEAEAILKAEILKQLDALPEDQQVMLK-LTIPTEANLYKELIDHP 231
Query: 230 QVSDEEIASNTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYG 289
+V RVV LSGG S +A L+ + + SFS
Sbjct: 232 RVL-------------RVVA--------LSGGYSRDEANELLARNHGL-----IASFS-- 263
Query: 290 RALQE 294
RAL E
Sbjct: 264 RALTE 268
>gnl|CDD|181231 PRK08114, PRK08114, cystathionine beta-lyase; Provisional.
Length = 395
Score = 30.8 bits (70), Expect = 0.55
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 115 GLDDLDVRLKQYKDAGARVAKW 136
GL L VRL+Q++++ +VA+W
Sbjct: 255 GLRTLGVRLRQHEESSLKVAEW 276
>gnl|CDD|130410 TIGR01343, hacA_fam, homoaconitate hydratase family protein. This
model represents a subfamily of proteins consisting of
aconitase, homoaconitase, 3-isopropylmalate dehydratase,
and uncharacterized proteins. The majority of the
members of this family have been designated as
3-isopropylmalate dehydratase large subunit (LeuC) in
microbial genome annotation, but the only characterized
member is Thermus thermophilus homoaconitase, an enzyme
of a non-aspartate pathway of Lys biosynthesis.
Length = 412
Score = 29.3 bits (66), Expect = 1.5
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
Query: 104 YPLYPGEHITVGLDDLDV----------RLKQYKDAGARVAKWRVVLSVSDVLPSMTVVK 153
+Y G+ I +D V RL++Y + R+V+ V V+P+ T+
Sbjct: 13 KEVYAGDLIVAEIDQAMVHDITAPLAIRRLEEYGIDKVFDPE-RIVIVVDHVVPASTIKA 71
Query: 154 ANMHILAR 161
A M LAR
Sbjct: 72 AEMQKLAR 79
>gnl|CDD|181615 PRK09028, PRK09028, cystathionine beta-lyase; Provisional.
Length = 394
Score = 28.9 bits (65), Expect = 1.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 115 GLDDLDVRLKQYKDAGARVAKW 136
GL L VRL Q++ +VA W
Sbjct: 252 GLRTLGVRLAQHEKNALKVANW 273
>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional.
Length = 334
Score = 28.5 bits (64), Expect = 2.9
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 255 IAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRALQESVLRAWN--GKQDNVVVAQR 312
+A L GG + A A + P +F A+ E+ L AW K +V Q
Sbjct: 87 MALLPGGGYAEYAVA---HKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQS 143
Query: 313 VLSHRA 318
VL H
Sbjct: 144 VLIHAG 149
>gnl|CDD|182707 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 28.4 bits (64), Expect = 3.0
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query: 213 EGLVL----KSNMILPG-----KSAPQV--SDEEIA-SNTIKIFKRVVPCAVQGIAFLSG 260
+GLVL K NM L ++ + +DE+ A S+ I++F P Q I LSG
Sbjct: 339 DGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSG 398
Query: 261 GQSEQDATAR 270
G ++ A AR
Sbjct: 399 GNQQKVAIAR 408
>gnl|CDD|161735 TIGR00157, TIGR00157, ribosome small subunit-dependent GTPase A.
The Aquifex aeolicus ortholog is split into consecutive
open reading frames. Consequently, this model was build
in fragment mode (-f option).
Length = 245
Score = 27.8 bits (62), Expect = 4.0
Identities = 10/39 (25%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Query: 137 RVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIV 175
++V+ S VLP + +++ L R+ V+ + + PI+
Sbjct: 39 QIVIVSSAVLPEL-----SLNQLDRFLVVAEAQNIEPII 72
>gnl|CDD|130391 TIGR01324, cysta_beta_ly_B, cystathionine beta-lyase, bacterial.
This model represents cystathionine beta-lyase
(alternate name: beta-cystathionase), one of several
pyridoxal-dependent enzymes of cysteine, methionine, and
homocysteine metabolism. This enzyme is involved in the
biosynthesis of Met from Cys.
Length = 377
Score = 27.1 bits (60), Expect = 6.5
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 115 GLDDLDVRLKQYKDAGARVAKW 136
GL L VRLKQ++++ +AKW
Sbjct: 241 GLRTLGVRLKQHQESSLAIAKW 262
>gnl|CDD|106966 PHA00657, PHA00657, crystallin beta/gamma motif-containing protein.
Length = 2052
Score = 27.1 bits (59), Expect = 6.9
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 249 PCAVQGIAFLSGGQSEQDATAR 270
P A+ G+A ++GGQS QDA ++
Sbjct: 245 PAALGGMASMTGGQSYQDARSQ 266
>gnl|CDD|181073 PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase;
Provisional.
Length = 239
Score = 27.0 bits (60), Expect = 7.4
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 1 MMQDLENSVAMMLQAGKGI 19
M Q L+ A++ AG+GI
Sbjct: 1 MAQSLQGKNALITGAGRGI 19
>gnl|CDD|179361 PRK02048, PRK02048, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase; Provisional.
Length = 611
Score = 26.7 bits (59), Expect = 8.4
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
Query: 272 SAMNSMGDCPWRLSFSYGR--ALQESVLRAWNGKQDNVVVAQ-----RVLSHRAHMNSLA 324
+ + M C L F + AL + VL + VV+ Q RV HRA + L
Sbjct: 384 AQLELMETCAAELKFLFLPYMALTDEVLACLKAHPEVVVILQSNHPNRVGEHRALAHQLM 443
Query: 325 TKGC 328
G
Sbjct: 444 VAGL 447
>gnl|CDD|184003 PRK13364, PRK13364, protocatechuate 4,5-dioxygenase subunit beta;
Provisional.
Length = 278
Score = 26.6 bits (59), Expect = 9.6
Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 281 PWRLSFSYGRALQESVLRAWNGKQDNVVVAQRVLSHR 317
R + G+A+ ++ +W + VV+ LSH+
Sbjct: 159 ARR-CYKLGQAIGRAI-ASWPSDERVVVIGTGGLSHQ 193
>gnl|CDD|184142 PRK13558, PRK13558, bacterio-opsin activator; Provisional.
Length = 665
Score = 26.7 bits (59), Expect = 9.6
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 70 ETLYQNAQDGTSFVDLISSSGV-LVGIKVDRG 100
E L + G S V L+S G + + DR
Sbjct: 523 ECLVEFTLSGDSLVRLLSERGGRVQDMHADRD 554
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.319 0.133 0.381
Gapped
Lambda K H
0.267 0.0661 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,279,274
Number of extensions: 332662
Number of successful extensions: 644
Number of sequences better than 10.0: 1
Number of HSP's gapped: 634
Number of HSP's successfully gapped: 23
Length of query: 339
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 245
Effective length of database: 3,963,321
Effective search space: 971013645
Effective search space used: 971013645
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.9 bits)