RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780652|ref|YP_003065065.1| Fructose-bisphosphate aldolase
[Candidatus Liberibacter asiaticus str. psy62]
         (339 letters)



>3bv4_A Fructose-bisphosphate aldolase A; lyase, acetylation,
           glycolysis, phosphoprotein, schiff base; HET: 13P; 1.70A
           {Oryctolagus cuniculus} PDB: 1ado_A* 1ewd_A 1zai_A*
           1zah_A* 1zaj_A* 1zal_A 2ot0_A 2ot1_A* 2qut_A 2quv_A
           3lge_A 3b8d_A 6ald_A* 1ex5_A 1ewe_A 2quu_A 3dfn_A 3dfo_A
           3dfp_A 3dfq_A ... (A:)
          Length = 341

 Score =  371 bits (953), Expect = e-104
 Identities = 154/330 (46%), Positives = 207/330 (62%), Gaps = 3/330 (0%)

Query: 3   QDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAM-QY 61
           ++L +    ++  GKGILAADES  +I KR ++I  E+TE +RR YR++L  A D +   
Sbjct: 10  KELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNPC 69

Query: 62  ISSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLDV 121
           I  ++L+ ETLYQ A DG  F  +I S G +VGIKVD+G+ P     GE  T GL  L  
Sbjct: 70  IGGVILFHETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLVGLSE 129

Query: 122 RLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEVLM 181
           R  QYK  GA  AKWR VL + +  PS   +  N ++LARYA +CQ  G+VPIVEPE+L 
Sbjct: 130 RCAQYKKDGADFAKWRCVLKIGEHTPSALAIMENANVLARYASICQQNGIVPIVEPEILP 189

Query: 182 EGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAP-QVSDEEIASNT 240
           +GDH ++RC  VTE VL  ++  L    +  EG +LK NM+ PG +   + S EEIA  T
Sbjct: 190 DGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLKPNMVTPGHACTQKYSHEEIAMAT 249

Query: 241 IKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMG-DCPWRLSFSYGRALQESVLRA 299
           +   +R VP AV G+ FLSGGQSE++A+  L+A+N      PW L+FSYGRALQ S L+A
Sbjct: 250 VTALRRTVPPAVTGVTFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGRALQASALKA 309

Query: 300 WNGKQDNVVVAQRVLSHRAHMNSLATKGCW 329
           W GK++N+  AQ     RA  NSLA +G +
Sbjct: 310 WGGKKENLKAAQEEYVKRALANSLACQGKY 339


>2qap_A Fructose-1,6-bisphosphate aldolase; beta barrel, C-teminal
           tail, lyase; 1.59A {Leishmania mexicana} (A:)
          Length = 391

 Score =  365 bits (939), Expect = e-102
 Identities = 139/341 (40%), Positives = 203/341 (59%), Gaps = 3/341 (0%)

Query: 1   MMQDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQ 60
              +L  +V  +   GKG+LAADES  +  KRF+ I L +TE  RR YR ++  A+   Q
Sbjct: 41  YESELIATVKKLTTPGKGLLAADESIGSCTKRFQPIGLSNTEEHRRQYRALMLEAEGFEQ 100

Query: 61  YISSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLY-PGEHITVGLDDL 119
           YIS ++L++ET+ Q A +G +F + +++ GV+ GIK D GL P      GE +T GLD  
Sbjct: 101 YISGVILHDETVGQKASNGQTFPEYLTARGVVPGIKTDMGLCPLLEGAEGEQMTEGLDGY 160

Query: 120 DVRLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEV 179
             R   Y   G R  KWR V  + +   S + V+ N   LARYA+L Q +GLVPIVEPEV
Sbjct: 161 VKRASAYYKKGCRFCKWRNVYKIQNGTVSESAVRFNAETLARYAILSQMSGLVPIVEPEV 220

Query: 180 LMEGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAPQV-SDEEIAS 238
           +++G H I+ C  V+E V R +   L    V +EG +LK NM++PG  + +  + E++A 
Sbjct: 221 MIDGKHDIDTCQRVSEHVWREVVAALQRHGVIWEGCLLKPNMVVPGAESGKTAAPEQVAH 280

Query: 239 NTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSM-GDCPWRLSFSYGRALQESVL 297
            T+    R +P  + G+ FLSGG SE  A+  L+A+N+     P+ LSFSY RALQ S L
Sbjct: 281 YTVMTLARTMPAMLPGVMFLSGGLSEVQASEYLNAINNSPLPRPYFLSFSYARALQSSAL 340

Query: 298 RAWNGKQDNVVVAQRVLSHRAHMNSLATKGCWKKSLENSNG 338
           +AW GK+  +   +R   HRA MNS+A  G +K+S ++++ 
Sbjct: 341 KAWGGKESGLAAGRRAFLHRARMNSMAQLGKYKRSDDDASS 381


>2pc4_A 41 kDa antigen, fructose-bisphosphate aldolase; invasion
           machinery, structural genomics, PSI, protein structure
           initiative; 2.40A {Plasmodium falciparum} PDB: 2eph_A
           1a5c_A (A:)
          Length = 369

 Score =  361 bits (927), Expect = e-101
 Identities = 152/339 (44%), Positives = 210/339 (61%), Gaps = 3/339 (0%)

Query: 1   MMQDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQ 60
           + ++L  +   ++QAGKGILAADES  TI+KRF  I LE+T  +R  YR++LF  K   +
Sbjct: 18  VAEELATTAQKLVQAGKGILAADESTQTIKKRFDNIKLENTIENRASYRDLLFGTKGLGK 77

Query: 61  YISSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLD 120
           +IS  +L+EETL+Q  + G   V+L+ +  ++ GIKVD+GL   P    E  T GLD L 
Sbjct: 78  FISGAILFEETLFQKNEAGVPMVNLLHNENIIPGIKVDKGLVNIPCTDEEKSTQGLDGLA 137

Query: 121 VRLKQYKDAGARVAKWRVVLSVSDV--LPSMTVVKANMHILARYAVLCQNAGLVPIVEPE 178
            R K+Y  AGAR AKWR VL +      P+   +      LARYA +CQ   LVPIVEPE
Sbjct: 138 ERCKEYYKAGARFAKWRTVLVIDTAKGKPTDLSIHETAWGLARYASICQQNRLVPIVEPE 197

Query: 179 VLMEGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAP-QVSDEEIA 237
           +L +G H+IE CA VT+ VL  +F  L    V  EG +LK NM+  G     + + +++ 
Sbjct: 198 ILADGPHSIEVCAVVTQKVLSCVFKALQENGVLLEGALLKPNMVTAGYECTAKTTTQDVG 257

Query: 238 SNTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRALQESVL 297
             T++  +R VP A+ G+ FLSGGQSE++A+  L+++N++G  PW L+FSYGRALQ SVL
Sbjct: 258 FLTVRTLRRTVPPALPGVVFLSGGQSEEEASVNLNSINALGPHPWALTFSYGRALQASVL 317

Query: 298 RAWNGKQDNVVVAQRVLSHRAHMNSLATKGCWKKSLENS 336
             W GK++NV  A+ VL  RA  NSLAT G +K      
Sbjct: 318 NTWQGKKENVAKAREVLLQRAEANSLATYGKYKGGAGGE 356


>3kx6_A Fructose-bisphosphate aldolase; ssgcid, NIH, niaid, SBRI,
           UW, emerald biostructures, glycolysis, lyase, structural
           genomics; HET: CIT; 2.10A {Babesia bovis} (A:)
          Length = 379

 Score =  359 bits (922), Expect = e-100
 Identities = 160/340 (47%), Positives = 207/340 (60%), Gaps = 3/340 (0%)

Query: 1   MMQDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQ 60
             ++L  + + +   GKGILAADES  TIQKRF  + +E+TE +R +YR +LF  K   +
Sbjct: 30  RAKELAENASFIASPGKGILAADESTGTIQKRFDNVGVENTEKNRAEYRSILFTTKGLGK 89

Query: 61  YISSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLD 120
           YIS  +L+EETL+Q A +G + VDL+ + G+L GIKVD+GL   P    E  T GLD L 
Sbjct: 90  YISGCILFEETLFQQAPNGQNMVDLLRAEGILPGIKVDKGLVTIPNTDEEVSTTGLDGLA 149

Query: 121 VRLKQYKDAGARVAKWRVVLSVSDV--LPSMTVVKANMHILARYAVLCQNAGLVPIVEPE 178
            R ++Y +AGAR AKWR VLS+      PS   +    H LARYA +CQ  GLVPIVEPE
Sbjct: 150 ERCQKYYNAGARFAKWRAVLSIDVKKNKPSNLSILETAHTLARYAAICQENGLVPIVEPE 209

Query: 179 VLMEGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAP-QVSDEEIA 237
           +L +GDH+IE CAEVTE VL  +F  L   +V  EG +LK NM+  G     + + + + 
Sbjct: 210 ILADGDHSIEVCAEVTERVLAAVFKALNDHKVLLEGALLKPNMVTQGVDCKDKPAPQTVG 269

Query: 238 SNTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRALQESVL 297
             T +  +R VP A+ G+ FLSGGQSE  AT  L+ +N     PW LSFSYGRALQ SVL
Sbjct: 270 FLTSRALRRTVPPALPGVMFLSGGQSESMATRHLNEINKCNKHPWSLSFSYGRALQSSVL 329

Query: 298 RAWNGKQDNVVVAQRVLSHRAHMNSLATKGCWKKSLENSN 337
           + WNG   N   AQ VL   A  NS A+ G  K  L +  
Sbjct: 330 KTWNGSMSNAAAAQDVLMKLAQQNSEASLGSLKTDLSDDG 369


>2iqt_A Fructose-bisphosphate aldolase class 1; TIM berrel,
           structural genomics, PSI-2, protein structure
           initiative; 2.46A {Porphyromonas gingivalis W83} (A:)
          Length = 296

 Score =  280 bits (718), Expect = 1e-76
 Identities = 54/333 (16%), Positives = 101/333 (30%), Gaps = 50/333 (15%)

Query: 2   MQDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDY--------REMLF 53
             + E  +    QA   + A D+S  +  K  KA  ++       +         R    
Sbjct: 3   AXNKE-QLQQXRQAPGFVGALDQSGGSTPKALKAYGIQPDAYQSEEEXFDLIHQXRTRXI 61

Query: 54  RAKDAM-QYISSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHI 112
            +       I  ++L+E T     +   +   L     ++  +KVD+GL+      G  +
Sbjct: 62  TSPAFATGKIIGVILFERTXRGKIEGXPTADFLWEKRHIVPFLKVDKGLQD--EANGVQL 119

Query: 113 TVGLDDLDVRLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLV 172
                +L    ++         K R V+       +   ++  +    ++     + GLV
Sbjct: 120 XKPFPELGKLCEEAVGYHVFGTKXRSVIKQ----ANEQGIRDIVEQQFQWGKEILSHGLV 175

Query: 173 PIVEPEVLMEGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAPQVS 232
           PI+EPEV +      +    +   +L  L           E + LK  +        +  
Sbjct: 176 PILEPEVDIHCPEKAKAEEILKRELLAQL-------DKXTEPVXLKITIPTVDNFYKE-- 226

Query: 233 DEEIASNTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRAL 292
                         +       +  LSGG S + A   LS           +  S+ RAL
Sbjct: 227 -------------IIEHPXXLRVVALSGGYSREQANELLS-------RNHGVIASFSRAL 266

Query: 293 QESVLRAWNGKQDNVVVAQRVLSHRAHMNSLAT 325
               L A     +     +            A+
Sbjct: 267 V-EGLSARQTDAEFNAXLE----ASIEDVYQAS 294


>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate
           binding, tagatose-bisphosphate aldolase,
           D-tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A
           {Streptococcus mutans} PDB: 3jrk_A (A:)
          Length = 332

 Score =  188 bits (477), Expect = 1e-48
 Identities = 41/335 (12%), Positives = 89/335 (26%), Gaps = 27/335 (8%)

Query: 22  ADESNATIQK--RFKAIHLESTENS------RRDYREMLFRAKDAMQYISSILLYEETLY 73
           ++    + QK      +   +   S      R   + +  + +     ++     +  + 
Sbjct: 1   SNAXILSQQKYNYLAKVSDSNGVISALAFDQRGALKCLXAQYQXKEPTVAQXEELKVLVS 60

Query: 74  QNAQDGTSFVDLIS----SSGVLVGIKVDRGLKPYPLYPGEHITVGLDDL--DVRLKQYK 127
           +      S + L       +      +    L         + T  L D   D  +K+ K
Sbjct: 61  EELTPYASSILLDPEYGLPAAQARDREAGLLLAYEKTGYDANTTSRLPDCLVDWSIKRLK 120

Query: 128 DAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEVL--MEGDH 185
           +AGA   K+ +   V                + R    CQ   +   +E         ++
Sbjct: 121 EAGADAVKFLLYYDVDGDPQVN---VQKQAYIERIGSECQAEDIPFFLEILTYDETISNN 177

Query: 186 TIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAPQ-VSDEEIASNTIKIF 244
           +    A+V    +          R   + L ++  +                     + F
Sbjct: 178 SSVEFAKVKVHKVNDAXKVFSAERFGIDVLKVEVPVNXVYVEGFAEGEVVYSKEEAAQAF 237

Query: 245 KRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRALQESVLRAWNGKQ 304
           +           +LS G S +     L   +  G          GRA     ++ +  + 
Sbjct: 238 REQEASTDLPYIYLSAGVSAELFQETLVFAHKAG--AKFNGVLCGRATWAGSVQVYXEEG 295

Query: 305 DNVVVAQRVLSHRAHMNSL-----ATKGCWKKSLE 334
                     S   ++N L      T   W + + 
Sbjct: 296 KEAARQWLRTSGLQNINELNKVLKTTASPWTEKVS 330


>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA
           domain, beta-sandwich, antiparallel beta-sheets,
           phosphopeptide binding motif; NMR {Mus musculus} (A:)
          Length = 119

 Score = 33.0 bits (75), Expect = 0.057
 Identities = 9/71 (12%), Positives = 20/71 (28%), Gaps = 2/71 (2%)

Query: 54  RAKDAMQYISSILLYEETLYQNAQDGTSFVDLISSSGVLV-GIKVDRGLKPYPLYPGEHI 112
           R              +  L  + +  T  V  +  +   V   ++  G     L  G+ +
Sbjct: 42  RGPLTQVTDRKCSRNQVELIADPESRTVAVKQLGVNPSTVGVQELKPG-LSGSLSLGDVL 100

Query: 113 TVGLDDLDVRL 123
            +      + L
Sbjct: 101 YLVNGLYPLTL 111


>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP
           hydrolase, alternative splicing, disease mutation, DNA
           damage, DNA repair, DNA-binding; 1.65A {Homo sapiens}
           (A:)
          Length = 102

 Score = 32.6 bits (74), Expect = 0.086
 Identities = 6/54 (11%), Positives = 18/54 (33%), Gaps = 2/54 (3%)

Query: 71  TLYQNAQDGTSFVDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVGLDDLDVRL 123
            L      G   V  +  +   +  + + +  +   L PG+ + +  +     +
Sbjct: 46  QLKAECNKGYVKVKQVGVNPTSIDSVVIGKD-QEVKLQPGQVLHMVNELYPYIV 98


>3gnf_B MVP, major vault protein; beta sheets, acetylation,
           cytoplasm, phosphoprotein, ribonucleoprotein, structural
           protein; 2.10A {Mus musculus} PDB: 3gf5_A 3gng_A 1y7x_A
           (B:283-387)
          Length = 105

 Score = 31.9 bits (73), Expect = 0.12
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 10/53 (18%)

Query: 96  KVDRGLKPYPLYPGEHITVGLDDLDV----------RLKQYKDAGARVAKWRV 138
           +V +G K + L PGE +  G+ D+ V           L+  ++          
Sbjct: 22  RVVKGEKSFFLQPGERLERGIQDVYVLSEQQGLLLKALQPLEEGEGEERVAHQ 74


>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domain; beta
           sandwich, P-loop, transferase; 2.80A {Mus musculus} (C:)
          Length = 143

 Score = 32.0 bits (72), Expect = 0.12
 Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 2/54 (3%)

Query: 71  TLYQNAQDGTSFVDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVGLDDLDVRL 123
            L  + +  T  V  +  +   V   ++  G     L  G+ + +      + L
Sbjct: 52  ELIADPESRTVAVKQLGVNPSTVGVHELKPG-LSGSLSLGDVLYLVNGLYPLTL 104


>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured
           domain, forkhead-associated domain (FHA) domain,
           PRE-mRNA retention and splicing; 2.40A {Saccharomyces
           cerevisiae} PDB: 2jkd_A (A:)
          Length = 205

 Score = 31.2 bits (69), Expect = 0.22
 Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 83  VDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVGLDDLDVRL 123
           +DL SS+G  +  + +    +   L  G+ +T+   + D   
Sbjct: 158 MDLDSSNGTCLNNVVIPGA-RYIELRSGDVLTLSEFEEDNDY 198


>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein
           kinase, FHA domain, alternative splicing, ATP-binding,
           cell cycle, disease mutation; 3.00A {Homo sapiens} PDB:
           3i6w_A (A:1-125)
          Length = 125

 Score = 30.8 bits (69), Expect = 0.28
 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 73  YQNAQDGTSFVDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVGLDDLDVRL 123
                   ++++  S +G  V    V +G K  PL     I + L    V +
Sbjct: 67  VGPKNSYIAYIEDHSGNGTFVNTELVGKG-KRRPLNNNSEIALSLSRNKVFV 117


>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain,
           NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
           (A:)
          Length = 140

 Score = 30.4 bits (68), Expect = 0.31
 Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 71  TLYQNAQDGTSFV-DLISSSGVLV-GIKVDRGLKPYPLYPGEHITVGLDDLDVRLKQ 125
            L  +      F+ DL S+ G  +  I+++   KP  +     ++ G       L++
Sbjct: 81  ALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPH-KPQQIPIDSTVSFGASTRAYTLRE 136


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
          Length = 258

 Score = 30.2 bits (68), Expect = 0.43
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 13/69 (18%)

Query: 3   QDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREML------FRAK 56
             +EN +   L+     + +++ N  + +R + IH E    +    R         F  +
Sbjct: 42  DWVENELEA-LKLEAEEIPSEDQNEFLLERTREIHNE----AESQLRAAQQQWGNDFYKR 96

Query: 57  DAMQYISSI 65
           D    I+ +
Sbjct: 97  D--PRIAPL 103



 Score = 27.2 bits (60), Expect = 3.2
 Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 26/92 (28%)

Query: 16 GKGIL-AADESNAT----------------IQKRFKAIHLESTENSRRDYREMLFRAK-- 56
          GKGIL  A E +++                +  R   I  +  EN     +         
Sbjct: 3  GKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIK-DWVENELEALKLEAEEIPSE 61

Query: 57 DAMQYIS--SILLYEETLYQ--NAQD--GTSF 82
          D  +++   +  ++ E   Q   AQ   G  F
Sbjct: 62 DQNEFLLERTREIHNEAESQLRAAQQQWGNDF 93


>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured
           domain, forkhead-associated domain (FHA) domain,
           PRE-mRNA retention and splicing; 1.80A {Saccharomyces
           cerevisiae} (A:)
          Length = 158

 Score = 30.2 bits (67), Expect = 0.45
 Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 83  VDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVGLDDLDVRL 123
           +DL SS+G  +  + +    +   L  G+ +T+   + D   
Sbjct: 111 MDLDSSNGTCLNNVVIPGA-RYIELRSGDVLTLSEFEEDNDY 151


>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich,
           ring finger protein 8, structural genomics, NPPSFA; NMR
           {Homo sapiens} (A:)
          Length = 145

 Score = 30.1 bits (67), Expect = 0.45
 Identities = 11/54 (20%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 71  TLYQNAQDGTSFVDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVGLDDLDVRL 123
            L QN +   + +D  S +GV +   +++   + Y ++ G++I +G+   +   
Sbjct: 65  VLKQNPEGQWTIMDNKSLNGVWLNRARLEPL-RVYSIHQGDYIQLGVPLENKEN 117


>1ro7_A Alpha-2,3/8-sialyltransferase; mixed alpha/beta, rossmann
           fold; HET: CSF; 1.80A {Campylobacter jejuni} (A:1-241)
          Length = 241

 Score = 29.4 bits (66), Expect = 0.71
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 6/61 (9%)

Query: 70  ETLYQNAQDGTSFVDLI-SSSGVLVGIKVDRGLKP-YPLYPGEHITV----GLDDLDVRL 123
            TL    Q+     +LI  S+     ++ +  +K  Y  +P  H+       L D +   
Sbjct: 60  YTLKHLIQNQEYETELIXCSNYNQAHLENENFVKTFYDYFPDAHLGYDFFKQLKDFNAYF 119

Query: 124 K 124
           K
Sbjct: 120 K 120


>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA
           domain, BRCT domain, phosphoprotein binding,
           phosphoserine binding, DNA repair; HET: DNA TPO; 2.15A
           {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
           (A:1-115)
          Length = 115

 Score = 29.2 bits (65), Expect = 0.73
 Identities = 7/44 (15%), Positives = 11/44 (25%), Gaps = 2/44 (4%)

Query: 82  FVDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVGLDDLDVRLK 124
             DL +  G  V    V +            I +G     +   
Sbjct: 70  VKDLDTKFGTKVNEKVVGQN-GDSYKEKDLKIQLGKCPFTINAY 112


>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex,
           cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae}
           (A:)
          Length = 127

 Score = 29.2 bits (65), Expect = 0.75
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 83  VDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVGLDDLDVRLK 124
           ++ IS++G  + G KV++      L  G+ ITVG+      L 
Sbjct: 73  LNDISTNGTWLNGQKVEKN-SNQLLSQGDEITVGVGVESDILS 114


>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel
           beta-sheets, phosphopeptide binding motif, structural
           genomics; NMR {Arabidopsis thaliana} (A:)
          Length = 118

 Score = 27.7 bits (61), Expect = 2.3
 Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 2/56 (3%)

Query: 77  QDGTSFVDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVGLDDLDVRLKQYKDAGA 131
                  DL SS+G L+    +D       L  G+ I +G     +       +  
Sbjct: 64  SGNWVIQDLGSSNGTLLNSNALDPE-TSVNLGDGDVIKLGEYTSILVNFVSGPSSG 118


>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN;
           1.80A {Homo sapiens} (A:178-336)
          Length = 159

 Score = 27.3 bits (60), Expect = 2.7
 Identities = 11/84 (13%), Positives = 26/84 (30%), Gaps = 10/84 (11%)

Query: 33  FKAIHLESTENSRRDYREMLFRAKDAMQYISSILL--------YEETLYQNAQDGTSFVD 84
              + L +     R +   +   K    Y  ++L+         E+ L+    D    + 
Sbjct: 2   VTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDH--QLT 59

Query: 85  LISSSGVLVGIKVDRGLKPYPLYP 108
            + +  + V    + G+      P
Sbjct: 60  EVGTMNIFVYWTHEDGVLELVTPP 83


>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel,
           Mn2+ and DCDP complex, lyase; HET: DCO; 2.35A
           {Escherichia coli} (A:648-818)
          Length = 171

 Score = 27.5 bits (61), Expect = 2.9
 Identities = 22/141 (15%), Positives = 47/141 (33%), Gaps = 12/141 (8%)

Query: 42  ENSRRDYREMLFRAKDAMQYISSILLYEETLYQNA------QDGTSFVDLISSSGVLVGI 95
             S   YR  +   KD + Y  S    +E            +  T  V+ + +   +   
Sbjct: 15  VISCDVYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAW 74

Query: 96  KVDRGLKPYPLYPGEHITVGLDDLDVRLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKAN 155
             +R + P  L  G  +   ++D   +  + +        +   L + +    M   KA+
Sbjct: 75  TQNRLMLPAWLGAGTALQKVVED--GKQSELEAMCRDWPFFSTRLGMLE----MVFAKAD 128

Query: 156 MHILARYAVLCQNAGLVPIVE 176
           + +   Y     +  L P+ +
Sbjct: 129 LWLAEYYDQRLVDKALWPLGK 149


>2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural
           genomics, PSI-2, protein structure initiative; 1.60A
           {Thermobifida fusca YX} PDB: 2qvh_A* (A:73-188)
          Length = 116

 Score = 27.5 bits (61), Expect = 3.0
 Identities = 6/27 (22%), Positives = 10/27 (37%)

Query: 112 ITVGLDDLDVRLKQYKDAGARVAKWRV 138
            TV     +   +    +G   AK +V
Sbjct: 2   ATVPAVGPEEAARIVASSGCTTAKVKV 28


>2p25_A Glyoxylase family protein; structural genomics, MCSG, PSI-2,
           protein structure initiative, midwest center for
           structural genomics; 1.70A {Enterococcus faecalis V583}
           (A:68-126)
          Length = 59

 Score = 26.2 bits (58), Expect = 6.3
 Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 1/36 (2%)

Query: 104 YPLYPGE-HITVGLDDLDVRLKQYKDAGARVAKWRV 138
           YP   G  H+   ++ ++  +    + G      RV
Sbjct: 1   YPEALGLRHLAFKVEHIEEVIAFLNEQGIETEPLRV 36


>1jqo_A Phosphoenolpyruvate carboxylase; beta barrel, carbon dioxide
           fixation, lyase; 3.00A {Zea mays} (A:708-880)
          Length = 173

 Score = 25.9 bits (57), Expect = 7.7
 Identities = 22/141 (15%), Positives = 42/141 (29%), Gaps = 10/141 (7%)

Query: 42  ENSRRDYREMLFRAKDAMQYISSILLYEETLYQN------AQDGTSFVDLISSSGVLVGI 95
             +  +YR ++ +    ++Y  S     E    N       +     +  + +   +   
Sbjct: 15  VVATEEYRSVVVKEARFVEYFRSATPETEYGRMNIGSRPAKRRPGGGITTLRAIPWIFSW 74

Query: 96  KVDRGLKPYPLYPGEHITVGLDDLDVRLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKAN 155
              R   P  L  G      +D      +  K+       +RV L + +    M   K +
Sbjct: 75  TQTRFHLPVWLGVGAAFKFAIDKDVRNFQVLKEMYNEWPFFRVTLDLLE----MVFAKGD 130

Query: 156 MHILARYAVLCQNAGLVPIVE 176
             I   Y  L     L P  +
Sbjct: 131 PGIAGLYDELLVAEELKPFGK 151


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.319    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0565    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,379,699
Number of extensions: 101001
Number of successful extensions: 326
Number of sequences better than 10.0: 1
Number of HSP's gapped: 304
Number of HSP's successfully gapped: 27
Length of query: 339
Length of database: 4,956,049
Length adjustment: 89
Effective length of query: 250
Effective length of database: 1,947,404
Effective search space: 486851000
Effective search space used: 486851000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.3 bits)