RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780652|ref|YP_003065065.1| Fructose-bisphosphate aldolase [Candidatus Liberibacter asiaticus str. psy62] (339 letters) >3bv4_A Fructose-bisphosphate aldolase A; lyase, acetylation, glycolysis, phosphoprotein, schiff base; HET: 13P; 1.70A {Oryctolagus cuniculus} PDB: 1ado_A* 1ewd_A 1zai_A* 1zah_A* 1zaj_A* 1zal_A 2ot0_A 2ot1_A* 2qut_A 2quv_A 3lge_A 3b8d_A 6ald_A* 1ex5_A 1ewe_A 2quu_A 3dfn_A 3dfo_A 3dfp_A 3dfq_A ... (A:) Length = 341 Score = 371 bits (953), Expect = e-104 Identities = 154/330 (46%), Positives = 207/330 (62%), Gaps = 3/330 (0%) Query: 3 QDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAM-QY 61 ++L + ++ GKGILAADES +I KR ++I E+TE +RR YR++L A D + Sbjct: 10 KELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNPC 69 Query: 62 ISSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLDV 121 I ++L+ ETLYQ A DG F +I S G +VGIKVD+G+ P GE T GL L Sbjct: 70 IGGVILFHETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLVGLSE 129 Query: 122 RLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEVLM 181 R QYK GA AKWR VL + + PS + N ++LARYA +CQ G+VPIVEPE+L Sbjct: 130 RCAQYKKDGADFAKWRCVLKIGEHTPSALAIMENANVLARYASICQQNGIVPIVEPEILP 189 Query: 182 EGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAP-QVSDEEIASNT 240 +GDH ++RC VTE VL ++ L + EG +LK NM+ PG + + S EEIA T Sbjct: 190 DGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLKPNMVTPGHACTQKYSHEEIAMAT 249 Query: 241 IKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMG-DCPWRLSFSYGRALQESVLRA 299 + +R VP AV G+ FLSGGQSE++A+ L+A+N PW L+FSYGRALQ S L+A Sbjct: 250 VTALRRTVPPAVTGVTFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGRALQASALKA 309 Query: 300 WNGKQDNVVVAQRVLSHRAHMNSLATKGCW 329 W GK++N+ AQ RA NSLA +G + Sbjct: 310 WGGKKENLKAAQEEYVKRALANSLACQGKY 339 >2qap_A Fructose-1,6-bisphosphate aldolase; beta barrel, C-teminal tail, lyase; 1.59A {Leishmania mexicana} (A:) Length = 391 Score = 365 bits (939), Expect = e-102 Identities = 139/341 (40%), Positives = 203/341 (59%), Gaps = 3/341 (0%) Query: 1 MMQDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQ 60 +L +V + GKG+LAADES + KRF+ I L +TE RR YR ++ A+ Q Sbjct: 41 YESELIATVKKLTTPGKGLLAADESIGSCTKRFQPIGLSNTEEHRRQYRALMLEAEGFEQ 100 Query: 61 YISSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLY-PGEHITVGLDDL 119 YIS ++L++ET+ Q A +G +F + +++ GV+ GIK D GL P GE +T GLD Sbjct: 101 YISGVILHDETVGQKASNGQTFPEYLTARGVVPGIKTDMGLCPLLEGAEGEQMTEGLDGY 160 Query: 120 DVRLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEV 179 R Y G R KWR V + + S + V+ N LARYA+L Q +GLVPIVEPEV Sbjct: 161 VKRASAYYKKGCRFCKWRNVYKIQNGTVSESAVRFNAETLARYAILSQMSGLVPIVEPEV 220 Query: 180 LMEGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAPQV-SDEEIAS 238 +++G H I+ C V+E V R + L V +EG +LK NM++PG + + + E++A Sbjct: 221 MIDGKHDIDTCQRVSEHVWREVVAALQRHGVIWEGCLLKPNMVVPGAESGKTAAPEQVAH 280 Query: 239 NTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSM-GDCPWRLSFSYGRALQESVL 297 T+ R +P + G+ FLSGG SE A+ L+A+N+ P+ LSFSY RALQ S L Sbjct: 281 YTVMTLARTMPAMLPGVMFLSGGLSEVQASEYLNAINNSPLPRPYFLSFSYARALQSSAL 340 Query: 298 RAWNGKQDNVVVAQRVLSHRAHMNSLATKGCWKKSLENSNG 338 +AW GK+ + +R HRA MNS+A G +K+S ++++ Sbjct: 341 KAWGGKESGLAAGRRAFLHRARMNSMAQLGKYKRSDDDASS 381 >2pc4_A 41 kDa antigen, fructose-bisphosphate aldolase; invasion machinery, structural genomics, PSI, protein structure initiative; 2.40A {Plasmodium falciparum} PDB: 2eph_A 1a5c_A (A:) Length = 369 Score = 361 bits (927), Expect = e-101 Identities = 152/339 (44%), Positives = 210/339 (61%), Gaps = 3/339 (0%) Query: 1 MMQDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQ 60 + ++L + ++QAGKGILAADES TI+KRF I LE+T +R YR++LF K + Sbjct: 18 VAEELATTAQKLVQAGKGILAADESTQTIKKRFDNIKLENTIENRASYRDLLFGTKGLGK 77 Query: 61 YISSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLD 120 +IS +L+EETL+Q + G V+L+ + ++ GIKVD+GL P E T GLD L Sbjct: 78 FISGAILFEETLFQKNEAGVPMVNLLHNENIIPGIKVDKGLVNIPCTDEEKSTQGLDGLA 137 Query: 121 VRLKQYKDAGARVAKWRVVLSVSDV--LPSMTVVKANMHILARYAVLCQNAGLVPIVEPE 178 R K+Y AGAR AKWR VL + P+ + LARYA +CQ LVPIVEPE Sbjct: 138 ERCKEYYKAGARFAKWRTVLVIDTAKGKPTDLSIHETAWGLARYASICQQNRLVPIVEPE 197 Query: 179 VLMEGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAP-QVSDEEIA 237 +L +G H+IE CA VT+ VL +F L V EG +LK NM+ G + + +++ Sbjct: 198 ILADGPHSIEVCAVVTQKVLSCVFKALQENGVLLEGALLKPNMVTAGYECTAKTTTQDVG 257 Query: 238 SNTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRALQESVL 297 T++ +R VP A+ G+ FLSGGQSE++A+ L+++N++G PW L+FSYGRALQ SVL Sbjct: 258 FLTVRTLRRTVPPALPGVVFLSGGQSEEEASVNLNSINALGPHPWALTFSYGRALQASVL 317 Query: 298 RAWNGKQDNVVVAQRVLSHRAHMNSLATKGCWKKSLENS 336 W GK++NV A+ VL RA NSLAT G +K Sbjct: 318 NTWQGKKENVAKAREVLLQRAEANSLATYGKYKGGAGGE 356 >3kx6_A Fructose-bisphosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, glycolysis, lyase, structural genomics; HET: CIT; 2.10A {Babesia bovis} (A:) Length = 379 Score = 359 bits (922), Expect = e-100 Identities = 160/340 (47%), Positives = 207/340 (60%), Gaps = 3/340 (0%) Query: 1 MMQDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQ 60 ++L + + + GKGILAADES TIQKRF + +E+TE +R +YR +LF K + Sbjct: 30 RAKELAENASFIASPGKGILAADESTGTIQKRFDNVGVENTEKNRAEYRSILFTTKGLGK 89 Query: 61 YISSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLD 120 YIS +L+EETL+Q A +G + VDL+ + G+L GIKVD+GL P E T GLD L Sbjct: 90 YISGCILFEETLFQQAPNGQNMVDLLRAEGILPGIKVDKGLVTIPNTDEEVSTTGLDGLA 149 Query: 121 VRLKQYKDAGARVAKWRVVLSVSDV--LPSMTVVKANMHILARYAVLCQNAGLVPIVEPE 178 R ++Y +AGAR AKWR VLS+ PS + H LARYA +CQ GLVPIVEPE Sbjct: 150 ERCQKYYNAGARFAKWRAVLSIDVKKNKPSNLSILETAHTLARYAAICQENGLVPIVEPE 209 Query: 179 VLMEGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAP-QVSDEEIA 237 +L +GDH+IE CAEVTE VL +F L +V EG +LK NM+ G + + + + Sbjct: 210 ILADGDHSIEVCAEVTERVLAAVFKALNDHKVLLEGALLKPNMVTQGVDCKDKPAPQTVG 269 Query: 238 SNTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRALQESVL 297 T + +R VP A+ G+ FLSGGQSE AT L+ +N PW LSFSYGRALQ SVL Sbjct: 270 FLTSRALRRTVPPALPGVMFLSGGQSESMATRHLNEINKCNKHPWSLSFSYGRALQSSVL 329 Query: 298 RAWNGKQDNVVVAQRVLSHRAHMNSLATKGCWKKSLENSN 337 + WNG N AQ VL A NS A+ G K L + Sbjct: 330 KTWNGSMSNAAAAQDVLMKLAQQNSEASLGSLKTDLSDDG 369 >2iqt_A Fructose-bisphosphate aldolase class 1; TIM berrel, structural genomics, PSI-2, protein structure initiative; 2.46A {Porphyromonas gingivalis W83} (A:) Length = 296 Score = 280 bits (718), Expect = 1e-76 Identities = 54/333 (16%), Positives = 101/333 (30%), Gaps = 50/333 (15%) Query: 2 MQDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDY--------REMLF 53 + E + QA + A D+S + K KA ++ + R Sbjct: 3 AXNKE-QLQQXRQAPGFVGALDQSGGSTPKALKAYGIQPDAYQSEEEXFDLIHQXRTRXI 61 Query: 54 RAKDAM-QYISSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHI 112 + I ++L+E T + + L ++ +KVD+GL+ G + Sbjct: 62 TSPAFATGKIIGVILFERTXRGKIEGXPTADFLWEKRHIVPFLKVDKGLQD--EANGVQL 119 Query: 113 TVGLDDLDVRLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLV 172 +L ++ K R V+ + ++ + ++ + GLV Sbjct: 120 XKPFPELGKLCEEAVGYHVFGTKXRSVIKQ----ANEQGIRDIVEQQFQWGKEILSHGLV 175 Query: 173 PIVEPEVLMEGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAPQVS 232 PI+EPEV + + + +L L E + LK + + Sbjct: 176 PILEPEVDIHCPEKAKAEEILKRELLAQL-------DKXTEPVXLKITIPTVDNFYKE-- 226 Query: 233 DEEIASNTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRAL 292 + + LSGG S + A LS + S+ RAL Sbjct: 227 -------------IIEHPXXLRVVALSGGYSREQANELLS-------RNHGVIASFSRAL 266 Query: 293 QESVLRAWNGKQDNVVVAQRVLSHRAHMNSLAT 325 L A + + A+ Sbjct: 267 V-EGLSARQTDAEFNAXLE----ASIEDVYQAS 294 >3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolase, D-tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3jrk_A (A:) Length = 332 Score = 188 bits (477), Expect = 1e-48 Identities = 41/335 (12%), Positives = 89/335 (26%), Gaps = 27/335 (8%) Query: 22 ADESNATIQK--RFKAIHLESTENS------RRDYREMLFRAKDAMQYISSILLYEETLY 73 ++ + QK + + S R + + + + ++ + + Sbjct: 1 SNAXILSQQKYNYLAKVSDSNGVISALAFDQRGALKCLXAQYQXKEPTVAQXEELKVLVS 60 Query: 74 QNAQDGTSFVDLIS----SSGVLVGIKVDRGLKPYPLYPGEHITVGLDDL--DVRLKQYK 127 + S + L + + L + T L D D +K+ K Sbjct: 61 EELTPYASSILLDPEYGLPAAQARDREAGLLLAYEKTGYDANTTSRLPDCLVDWSIKRLK 120 Query: 128 DAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEVL--MEGDH 185 +AGA K+ + V + R CQ + +E ++ Sbjct: 121 EAGADAVKFLLYYDVDGDPQVN---VQKQAYIERIGSECQAEDIPFFLEILTYDETISNN 177 Query: 186 TIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAPQ-VSDEEIASNTIKIF 244 + A+V + R + L ++ + + F Sbjct: 178 SSVEFAKVKVHKVNDAXKVFSAERFGIDVLKVEVPVNXVYVEGFAEGEVVYSKEEAAQAF 237 Query: 245 KRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRALQESVLRAWNGKQ 304 + +LS G S + L + G GRA ++ + + Sbjct: 238 REQEASTDLPYIYLSAGVSAELFQETLVFAHKAG--AKFNGVLCGRATWAGSVQVYXEEG 295 Query: 305 DNVVVAQRVLSHRAHMNSL-----ATKGCWKKSLE 334 S ++N L T W + + Sbjct: 296 KEAARQWLRTSGLQNINELNKVLKTTASPWTEKVS 330 >1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} (A:) Length = 119 Score = 33.0 bits (75), Expect = 0.057 Identities = 9/71 (12%), Positives = 20/71 (28%), Gaps = 2/71 (2%) Query: 54 RAKDAMQYISSILLYEETLYQNAQDGTSFVDLISSSGVLV-GIKVDRGLKPYPLYPGEHI 112 R + L + + T V + + V ++ G L G+ + Sbjct: 42 RGPLTQVTDRKCSRNQVELIADPESRTVAVKQLGVNPSTVGVQELKPG-LSGSLSLGDVL 100 Query: 113 TVGLDDLDVRL 123 + + L Sbjct: 101 YLVNGLYPLTL 111 >3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} (A:) Length = 102 Score = 32.6 bits (74), Expect = 0.086 Identities = 6/54 (11%), Positives = 18/54 (33%), Gaps = 2/54 (3%) Query: 71 TLYQNAQDGTSFVDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVGLDDLDVRL 123 L G V + + + + + + + L PG+ + + + + Sbjct: 46 QLKAECNKGYVKVKQVGVNPTSIDSVVIGKD-QEVKLQPGQVLHMVNELYPYIV 98 >3gnf_B MVP, major vault protein; beta sheets, acetylation, cytoplasm, phosphoprotein, ribonucleoprotein, structural protein; 2.10A {Mus musculus} PDB: 3gf5_A 3gng_A 1y7x_A (B:283-387) Length = 105 Score = 31.9 bits (73), Expect = 0.12 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 10/53 (18%) Query: 96 KVDRGLKPYPLYPGEHITVGLDDLDV----------RLKQYKDAGARVAKWRV 138 +V +G K + L PGE + G+ D+ V L+ ++ Sbjct: 22 RVVKGEKSFFLQPGERLERGIQDVYVLSEQQGLLLKALQPLEEGEGEERVAHQ 74 >1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domain; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} (C:) Length = 143 Score = 32.0 bits (72), Expect = 0.12 Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 2/54 (3%) Query: 71 TLYQNAQDGTSFVDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVGLDDLDVRL 123 L + + T V + + V ++ G L G+ + + + L Sbjct: 52 ELIADPESRTVAVKQLGVNPSTVGVHELKPG-LSGSLSLGDVLYLVNGLYPLTL 104 >3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domain (FHA) domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A (A:) Length = 205 Score = 31.2 bits (69), Expect = 0.22 Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 2/42 (4%) Query: 83 VDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVGLDDLDVRL 123 +DL SS+G + + + + L G+ +T+ + D Sbjct: 158 MDLDSSNGTCLNNVVIPGA-RYIELRSGDVLTLSEFEEDNDY 198 >3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, alternative splicing, ATP-binding, cell cycle, disease mutation; 3.00A {Homo sapiens} PDB: 3i6w_A (A:1-125) Length = 125 Score = 30.8 bits (69), Expect = 0.28 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 2/52 (3%) Query: 73 YQNAQDGTSFVDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVGLDDLDVRL 123 ++++ S +G V V +G K PL I + L V + Sbjct: 67 VGPKNSYIAYIEDHSGNGTFVNTELVGKG-KRRPLNNNSEIALSLSRNKVFV 117 >2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} (A:) Length = 140 Score = 30.4 bits (68), Expect = 0.31 Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 3/57 (5%) Query: 71 TLYQNAQDGTSFV-DLISSSGVLV-GIKVDRGLKPYPLYPGEHITVGLDDLDVRLKQ 125 L + F+ DL S+ G + I+++ KP + ++ G L++ Sbjct: 81 ALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPH-KPQQIPIDSTVSFGASTRAYTLRE 136 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688) Length = 258 Score = 30.2 bits (68), Expect = 0.43 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 13/69 (18%) Query: 3 QDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREML------FRAK 56 +EN + L+ + +++ N + +R + IH E + R F + Sbjct: 42 DWVENELEA-LKLEAEEIPSEDQNEFLLERTREIHNE----AESQLRAAQQQWGNDFYKR 96 Query: 57 DAMQYISSI 65 D I+ + Sbjct: 97 D--PRIAPL 103 Score = 27.2 bits (60), Expect = 3.2 Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 26/92 (28%) Query: 16 GKGIL-AADESNAT----------------IQKRFKAIHLESTENSRRDYREMLFRAK-- 56 GKGIL A E +++ + R I + EN + Sbjct: 3 GKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIK-DWVENELEALKLEAEEIPSE 61 Query: 57 DAMQYIS--SILLYEETLYQ--NAQD--GTSF 82 D +++ + ++ E Q AQ G F Sbjct: 62 DQNEFLLERTREIHNEAESQLRAAQQQWGNDF 93 >3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domain (FHA) domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} (A:) Length = 158 Score = 30.2 bits (67), Expect = 0.45 Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 2/42 (4%) Query: 83 VDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVGLDDLDVRL 123 +DL SS+G + + + + L G+ +T+ + D Sbjct: 111 MDLDSSNGTCLNNVVIPGA-RYIELRSGDVLTLSEFEEDNDY 151 >2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Length = 145 Score = 30.1 bits (67), Expect = 0.45 Identities = 11/54 (20%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Query: 71 TLYQNAQDGTSFVDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVGLDDLDVRL 123 L QN + + +D S +GV + +++ + Y ++ G++I +G+ + Sbjct: 65 VLKQNPEGQWTIMDNKSLNGVWLNRARLEPL-RVYSIHQGDYIQLGVPLENKEN 117 >1ro7_A Alpha-2,3/8-sialyltransferase; mixed alpha/beta, rossmann fold; HET: CSF; 1.80A {Campylobacter jejuni} (A:1-241) Length = 241 Score = 29.4 bits (66), Expect = 0.71 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 6/61 (9%) Query: 70 ETLYQNAQDGTSFVDLI-SSSGVLVGIKVDRGLKP-YPLYPGEHITV----GLDDLDVRL 123 TL Q+ +LI S+ ++ + +K Y +P H+ L D + Sbjct: 60 YTLKHLIQNQEYETELIXCSNYNQAHLENENFVKTFYDYFPDAHLGYDFFKQLKDFNAYF 119 Query: 124 K 124 K Sbjct: 120 K 120 >3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosphoserine binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A* (A:1-115) Length = 115 Score = 29.2 bits (65), Expect = 0.73 Identities = 7/44 (15%), Positives = 11/44 (25%), Gaps = 2/44 (4%) Query: 82 FVDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVGLDDLDVRLK 124 DL + G V V + I +G + Sbjct: 70 VKDLDTKFGTKVNEKVVGQN-GDSYKEKDLKIQLGKCPFTINAY 112 >1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} (A:) Length = 127 Score = 29.2 bits (65), Expect = 0.75 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%) Query: 83 VDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVGLDDLDVRLK 124 ++ IS++G + G KV++ L G+ ITVG+ L Sbjct: 73 LNDISTNGTWLNGQKVEKN-SNQLLSQGDEITVGVGVESDILS 114 >1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} (A:) Length = 118 Score = 27.7 bits (61), Expect = 2.3 Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 2/56 (3%) Query: 77 QDGTSFVDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVGLDDLDVRLKQYKDAGA 131 DL SS+G L+ +D L G+ I +G + + Sbjct: 64 SGNWVIQDLGSSNGTLLNSNALDPE-TSVNLGDGDVIKLGEYTSILVNFVSGPSSG 118 >2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} (A:178-336) Length = 159 Score = 27.3 bits (60), Expect = 2.7 Identities = 11/84 (13%), Positives = 26/84 (30%), Gaps = 10/84 (11%) Query: 33 FKAIHLESTENSRRDYREMLFRAKDAMQYISSILL--------YEETLYQNAQDGTSFVD 84 + L + R + + K Y ++L+ E+ L+ D + Sbjct: 2 VTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDH--QLT 59 Query: 85 LISSSGVLVGIKVDRGLKPYPLYP 108 + + + V + G+ P Sbjct: 60 EVGTMNIFVYWTHEDGVLELVTPP 83 >1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+ and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia coli} (A:648-818) Length = 171 Score = 27.5 bits (61), Expect = 2.9 Identities = 22/141 (15%), Positives = 47/141 (33%), Gaps = 12/141 (8%) Query: 42 ENSRRDYREMLFRAKDAMQYISSILLYEETLYQNA------QDGTSFVDLISSSGVLVGI 95 S YR + KD + Y S +E + T V+ + + + Sbjct: 15 VISCDVYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAW 74 Query: 96 KVDRGLKPYPLYPGEHITVGLDDLDVRLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKAN 155 +R + P L G + ++D + + + + L + + M KA+ Sbjct: 75 TQNRLMLPAWLGAGTALQKVVED--GKQSELEAMCRDWPFFSTRLGMLE----MVFAKAD 128 Query: 156 MHILARYAVLCQNAGLVPIVE 176 + + Y + L P+ + Sbjct: 129 LWLAEYYDQRLVDKALWPLGK 149 >2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural genomics, PSI-2, protein structure initiative; 1.60A {Thermobifida fusca YX} PDB: 2qvh_A* (A:73-188) Length = 116 Score = 27.5 bits (61), Expect = 3.0 Identities = 6/27 (22%), Positives = 10/27 (37%) Query: 112 ITVGLDDLDVRLKQYKDAGARVAKWRV 138 TV + + +G AK +V Sbjct: 2 ATVPAVGPEEAARIVASSGCTTAKVKV 28 >2p25_A Glyoxylase family protein; structural genomics, MCSG, PSI-2, protein structure initiative, midwest center for structural genomics; 1.70A {Enterococcus faecalis V583} (A:68-126) Length = 59 Score = 26.2 bits (58), Expect = 6.3 Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 1/36 (2%) Query: 104 YPLYPGE-HITVGLDDLDVRLKQYKDAGARVAKWRV 138 YP G H+ ++ ++ + + G RV Sbjct: 1 YPEALGLRHLAFKVEHIEEVIAFLNEQGIETEPLRV 36 >1jqo_A Phosphoenolpyruvate carboxylase; beta barrel, carbon dioxide fixation, lyase; 3.00A {Zea mays} (A:708-880) Length = 173 Score = 25.9 bits (57), Expect = 7.7 Identities = 22/141 (15%), Positives = 42/141 (29%), Gaps = 10/141 (7%) Query: 42 ENSRRDYREMLFRAKDAMQYISSILLYEETLYQN------AQDGTSFVDLISSSGVLVGI 95 + +YR ++ + ++Y S E N + + + + + Sbjct: 15 VVATEEYRSVVVKEARFVEYFRSATPETEYGRMNIGSRPAKRRPGGGITTLRAIPWIFSW 74 Query: 96 KVDRGLKPYPLYPGEHITVGLDDLDVRLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKAN 155 R P L G +D + K+ +RV L + + M K + Sbjct: 75 TQTRFHLPVWLGVGAAFKFAIDKDVRNFQVLKEMYNEWPFFRVTLDLLE----MVFAKGD 130 Query: 156 MHILARYAVLCQNAGLVPIVE 176 I Y L L P + Sbjct: 131 PGIAGLYDELLVAEELKPFGK 151 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.319 0.133 0.381 Gapped Lambda K H 0.267 0.0565 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,379,699 Number of extensions: 101001 Number of successful extensions: 326 Number of sequences better than 10.0: 1 Number of HSP's gapped: 304 Number of HSP's successfully gapped: 27 Length of query: 339 Length of database: 4,956,049 Length adjustment: 89 Effective length of query: 250 Effective length of database: 1,947,404 Effective search space: 486851000 Effective search space used: 486851000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 55 (25.3 bits)