RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780652|ref|YP_003065065.1| Fructose-bisphosphate aldolase
[Candidatus Liberibacter asiaticus str. psy62]
(339 letters)
>3bv4_A Fructose-bisphosphate aldolase A; lyase, acetylation, glycolysis,
phosphoprotein, schiff base; HET: 13P; 1.70A
{Oryctolagus cuniculus} PDB: 1ado_A* 1ewd_A 1zai_A*
1zah_A* 1zaj_A* 1zal_A 2ot0_A 2ot1_A* 2qut_A 2quv_A
3lge_A 3b8d_A 6ald_A* 1ex5_A 1ewe_A 2quu_A 3dfn_A 3dfo_A
3dfp_A 3dfq_A ...
Length = 341
Score = 445 bits (1147), Expect = e-126
Identities = 154/330 (46%), Positives = 206/330 (62%), Gaps = 3/330 (0%)
Query: 3 QDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAM-QY 61
++L + ++ GKGILAADES +I KR ++I E+TE +RR YR++L A D +
Sbjct: 10 KELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNPC 69
Query: 62 ISSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLDV 121
I ++L+ ETLYQ A DG F +I S G +VGIKVD+G+ P GE T GL L
Sbjct: 70 IGGVILFHETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLVGLSE 129
Query: 122 RLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEVLM 181
R QYK GA AKWR VL + + PS + N ++LARYA +CQ G+VPIVEPE+L
Sbjct: 130 RCAQYKKDGADFAKWRCVLKIGEHTPSALAIMENANVLARYASICQQNGIVPIVEPEILP 189
Query: 182 EGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGK-SAPQVSDEEIASNT 240
+GDH ++RC VTE VL ++ L + EG +LK NM+ PG + S EEIA T
Sbjct: 190 DGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLKPNMVTPGHACTQKYSHEEIAMAT 249
Query: 241 IKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDC-PWRLSFSYGRALQESVLRA 299
+ +R VP AV G+ FLSGGQSE++A+ L+A+N PW L+FSYGRALQ S L+A
Sbjct: 250 VTALRRTVPPAVTGVTFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGRALQASALKA 309
Query: 300 WNGKQDNVVVAQRVLSHRAHMNSLATKGCW 329
W GK++N+ AQ RA NSLA +G +
Sbjct: 310 WGGKKENLKAAQEEYVKRALANSLACQGKY 339
>3mmt_A Fructose-bisphosphate aldolase; ssgcid, structural genomics,
seattle structural GE center for infectious disease,
hydrolase; HET: 2FP; 2.35A {Bartonella henselae}
Length = 347
Score = 413 bits (1062), Expect = e-116
Identities = 188/341 (55%), Positives = 236/341 (69%), Gaps = 5/341 (1%)
Query: 1 MMQDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAM- 59
M + LE+ ++ AGKGILAADES ATI KRF++I +E TE++RR YREMLF AK+AM
Sbjct: 5 MNERLEDIALTLVGAGKGILAADESTATIGKRFESIGVECTEDNRRAYREMLFTAKEAME 64
Query: 60 QYISSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDL 119
IS ++L++ETL Q A G DLI +G + GIKVD G KP +P E IT GLD L
Sbjct: 65 SAISGVILFDETLRQKASTGQMLTDLIRDAGAVPGIKVDTGAKPLAAFPQETITEGLDGL 124
Query: 120 DVRLKQYKDAGARVAKWRVVLSVSD-VLPSMTVVKANMHILARYAVLCQNAGLVPIVEPE 178
RLK Y GAR AKWR V+++ LP+ + N LARYA LCQ AGLVPIVEPE
Sbjct: 125 RERLKDYYTLGARFAKWRAVIAIDAQTLPTRGAISQNAQALARYAALCQEAGLVPIVEPE 184
Query: 179 VLMEG---DHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAPQVSDEE 235
VLM+G H+I RC EVT+ VL T+F EL+ RV FEG++LK NM++ GK A S EE
Sbjct: 185 VLMDGPSRQHSITRCFEVTKVVLHTVFKELFEARVLFEGMILKPNMVIDGKDARIASVEE 244
Query: 236 IASNTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRALQES 295
+A T+ + K+ VP AV GIAFLSGGQ++++ATA LSAMN++G PW+L+FSYGRALQ +
Sbjct: 245 VAEKTVHVLKQTVPAAVPGIAFLSGGQTDEEATAHLSAMNALGALPWKLTFSYGRALQAA 304
Query: 296 VLRAWNGKQDNVVVAQRVLSHRAHMNSLATKGCWKKSLENS 336
L+AW GK +N+VVAQ+ HRA MN LA G W K E S
Sbjct: 305 ALKAWAGKNENIVVAQKAFCHRARMNHLAALGQWTKDQEKS 345
>3kx6_A Fructose-bisphosphate aldolase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, glycolysis, lyase, structural
genomics; HET: CIT; 2.10A {Babesia bovis}
Length = 379
Score = 410 bits (1056), Expect = e-115
Identities = 160/340 (47%), Positives = 207/340 (60%), Gaps = 3/340 (0%)
Query: 1 MMQDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQ 60
++L + + + GKGILAADES TIQKRF + +E+TE +R +YR +LF K +
Sbjct: 30 RAKELAENASFIASPGKGILAADESTGTIQKRFDNVGVENTEKNRAEYRSILFTTKGLGK 89
Query: 61 YISSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLD 120
YIS +L+EETL+Q A +G + VDL+ + G+L GIKVD+GL P E T GLD L
Sbjct: 90 YISGCILFEETLFQQAPNGQNMVDLLRAEGILPGIKVDKGLVTIPNTDEEVSTTGLDGLA 149
Query: 121 VRLKQYKDAGARVAKWRVVLSV--SDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPE 178
R ++Y +AGAR AKWR VLS+ PS + H LARYA +CQ GLVPIVEPE
Sbjct: 150 ERCQKYYNAGARFAKWRAVLSIDVKKNKPSNLSILETAHTLARYAAICQENGLVPIVEPE 209
Query: 179 VLMEGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGK-SAPQVSDEEIA 237
+L +GDH+IE CAEVTE VL +F L +V EG +LK NM+ G + + + +
Sbjct: 210 ILADGDHSIEVCAEVTERVLAAVFKALNDHKVLLEGALLKPNMVTQGVDCKDKPAPQTVG 269
Query: 238 SNTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRALQESVL 297
T + +R VP A+ G+ FLSGGQSE AT L+ +N PW LSFSYGRALQ SVL
Sbjct: 270 FLTSRALRRTVPPALPGVMFLSGGQSESMATRHLNEINKCNKHPWSLSFSYGRALQSSVL 329
Query: 298 RAWNGKQDNVVVAQRVLSHRAHMNSLATKGCWKKSLENSN 337
+ WNG N AQ VL A NS A+ G K L +
Sbjct: 330 KTWNGSMSNAAAAQDVLMKLAQQNSEASLGSLKTDLSDDG 369
>3mbd_A Fructose-bisphosphate aldolase; glycolysis, lyase, schiff base,
structural genomics; 2.00A {Encephalitozoon cuniculi}
PDB: 3mbf_A*
Length = 342
Score = 384 bits (987), Expect = e-107
Identities = 124/333 (37%), Positives = 193/333 (57%), Gaps = 5/333 (1%)
Query: 2 MQDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQY 61
+ L + +L+ GKGILAADE+ T+ +RF+ + + +TE +RR +RE+LF K +Y
Sbjct: 11 LLRLGMTAKKILENGKGILAADETPKTLGRRFEKLGITNTEENRRKFREILFSTKGIERY 70
Query: 62 ISSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLDV 121
I ++L +ET Q + G +L+ G+ +GIK+D+GL E I+VGL+DLD+
Sbjct: 71 IGGVILNQETFEQTSGSGVPLTELLKKKGIEIGIKLDKGLI--DYKEKEKISVGLEDLDL 128
Query: 122 RLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEVLM 181
R K A AKWR + D +PS + N ILA+YA++CQ GLVPIVEPEV +
Sbjct: 129 RCKSSAFKDATFAKWRSLFYFYDGIPSEDCINENCSILAKYAIICQKNGLVPIVEPEVFL 188
Query: 182 EGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAP-QVSDEEIASNT 240
EGD++++R EVT +L TL L V G+++K++ + G+ + + + +++A+ T
Sbjct: 189 EGDYSMKRSYEVTRQILSTLMKYLNYELVYIPGVLIKASYVTSGQLSNEKYTPKKVATFT 248
Query: 241 IKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDC-PWRLSFSYGRALQESVLRA 299
++ +PC + GI FLSGG +DA L+A+N C W LSFS+ RAL + VL
Sbjct: 249 LRALLSTIPCGIPGIVFLSGGHGSEDAIGFLNAINMERGCRTWSLSFSFARALTDGVLET 308
Query: 300 WNGKQDNVVVAQRVLSHRAHMNSLATKG-CWKK 331
W G N+ AQ++L + +G W +
Sbjct: 309 WRGDDSNIEEAQKILLETSFKACRGAEGKLWDQ 341
>2qap_A Fructose-1,6-bisphosphate aldolase; beta barrel, C-teminal tail,
lyase; 1.59A {Leishmania mexicana} SCOP: c.1.10.1 PDB:
2qdg_A* 2qdh_A* 1epx_A 1f2j_A
Length = 391
Score = 351 bits (902), Expect = 1e-97
Identities = 139/337 (41%), Positives = 201/337 (59%), Gaps = 3/337 (0%)
Query: 3 QDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQYI 62
+L +V + GKG+LAADES + KRF+ I L +TE RR YR ++ A+ QYI
Sbjct: 43 SELIATVKKLTTPGKGLLAADESIGSCTKRFQPIGLSNTEEHRRQYRALMLEAEGFEQYI 102
Query: 63 SSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKP-YPLYPGEHITVGLDDLDV 121
S ++L++ET+ Q A +G +F + +++ GV+ GIK D GL P GE +T GLD
Sbjct: 103 SGVILHDETVGQKASNGQTFPEYLTARGVVPGIKTDMGLCPLLEGAEGEQMTEGLDGYVK 162
Query: 122 RLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEVLM 181
R Y G R KWR V + + S + V+ N LARYA+L Q +GLVPIVEPEV++
Sbjct: 163 RASAYYKKGCRFCKWRNVYKIQNGTVSESAVRFNAETLARYAILSQMSGLVPIVEPEVMI 222
Query: 182 EGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAP-QVSDEEIASNT 240
+G H I+ C V+E V R + L V +EG +LK NM++PG + + E++A T
Sbjct: 223 DGKHDIDTCQRVSEHVWREVVAALQRHGVIWEGCLLKPNMVVPGAESGKTAAPEQVAHYT 282
Query: 241 IKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMG-DCPWRLSFSYGRALQESVLRA 299
+ R +P + G+ FLSGG SE A+ L+A+N+ P+ LSFSY RALQ S L+A
Sbjct: 283 VMTLARTMPAMLPGVMFLSGGLSEVQASEYLNAINNSPLPRPYFLSFSYARALQSSALKA 342
Query: 300 WNGKQDNVVVAQRVLSHRAHMNSLATKGCWKKSLENS 336
W GK+ + +R HRA MNS+A G +K+S +++
Sbjct: 343 WGGKESGLAAGRRAFLHRARMNSMAQLGKYKRSDDDA 379
>2pc4_A 41 kDa antigen, fructose-bisphosphate aldolase; invasion machinery,
structural genomics, PSI, protein structure initiative;
2.40A {Plasmodium falciparum} PDB: 2eph_A 1a5c_A
Length = 369
Score = 342 bits (879), Expect = 6e-95
Identities = 151/339 (44%), Positives = 210/339 (61%), Gaps = 3/339 (0%)
Query: 1 MMQDLENSVAMMLQAGKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQ 60
+ ++L + ++QAGKGILAADES TI+KRF I LE+T +R YR++LF K +
Sbjct: 18 VAEELATTAQKLVQAGKGILAADESTQTIKKRFDNIKLENTIENRASYRDLLFGTKGLGK 77
Query: 61 YISSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLD 120
+IS +L+EETL+Q + G V+L+ + ++ GIKVD+GL P E T GLD L
Sbjct: 78 FISGAILFEETLFQKNEAGVPMVNLLHNENIIPGIKVDKGLVNIPCTDEEKSTQGLDGLA 137
Query: 121 VRLKQYKDAGARVAKWR--VVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPE 178
R K+Y AGAR AKWR +V+ + P+ + LARYA +CQ LVPIVEPE
Sbjct: 138 ERCKEYYKAGARFAKWRTVLVIDTAKGKPTDLSIHETAWGLARYASICQQNRLVPIVEPE 197
Query: 179 VLMEGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAPQVSD-EEIA 237
+L +G H+IE CA VT+ VL +F L V EG +LK NM+ G + +++
Sbjct: 198 ILADGPHSIEVCAVVTQKVLSCVFKALQENGVLLEGALLKPNMVTAGYECTAKTTTQDVG 257
Query: 238 SNTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRALQESVL 297
T++ +R VP A+ G+ FLSGGQSE++A+ L+++N++G PW L+FSYGRALQ SVL
Sbjct: 258 FLTVRTLRRTVPPALPGVVFLSGGQSEEEASVNLNSINALGPHPWALTFSYGRALQASVL 317
Query: 298 RAWNGKQDNVVVAQRVLSHRAHMNSLATKGCWKKSLENS 336
W GK++NV A+ VL RA NSLAT G +K
Sbjct: 318 NTWQGKKENVAKAREVLLQRAEANSLATYGKYKGGAGGE 356
>2iqt_A Fructose-bisphosphate aldolase class 1; TIM berrel, structural
genomics, PSI-2, protein structure initiative; 2.46A
{Porphyromonas gingivalis W83}
Length = 296
Score = 252 bits (646), Expect = 7e-68
Identities = 54/305 (17%), Positives = 100/305 (32%), Gaps = 45/305 (14%)
Query: 10 AMMLQAGKGILAADESNATIQKRFKAIHLESTENS--------RRDYREMLFRAKDAM-Q 60
M QA + A D+S + K KA ++ R + +
Sbjct: 10 QQMRQAPGFVGALDQSGGSTPKALKAYGIQPDAYQSEEEMFDLIHQMRTRMITSPAFATG 69
Query: 61 YISSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLD 120
I ++L+E T+ + + L ++ +KVD+GL+ G + +L
Sbjct: 70 KIIGVILFERTMRGKIEGMPTADFLWEKRHIVPFLKVDKGLQD--EANGVQLMKPFPELG 127
Query: 121 VRLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEVL 180
++ K R V+ + ++ + ++ + GLVPI+EPEV
Sbjct: 128 KLCEEAVGYHVFGTKMRSVIKQ----ANEQGIRDIVEQQFQWGKEILSHGLVPILEPEVD 183
Query: 181 MEGDHTIERCAEVTEFVLRTLFNELYTMRVCFEGLVLKSNMILPGKSAPQVSDEEIASNT 240
+ + + +L L E ++LK +
Sbjct: 184 IHCPEKAKAEEILKRELLAQL-------DKMTEPVMLKITIPTVDNFYK----------- 225
Query: 241 IKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRALQESVLRAW 300
+ + + + LSGG S + A LS + S+ RAL E L A
Sbjct: 226 ----EIIEHPMMLRVVALSGGYSREQANELLSR-------NHGVIASFSRALVEG-LSAR 273
Query: 301 NGKQD 305
+
Sbjct: 274 QTDAE 278
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 63.0 bits (153), Expect = 8e-11
Identities = 69/393 (17%), Positives = 109/393 (27%), Gaps = 182/393 (46%)
Query: 1 MMQDLENSVAMMLQAGKGI--LAA---DESNATIQKR-------FKAIHLESTENSRRDY 48
+ + EN L+ G I LAA E++ T+ K A + + +
Sbjct: 87 CLTEFENCY---LE-GNDIHALAAKLLQENDTTLVKTKELIKNYITARIM-AKRPFDKKS 141
Query: 49 REMLFRA---KDAMQYISSIL---------------LYEETLYQNAQDGTSFV-DLISSS 89
LFRA +A +I LY Y V DLI S
Sbjct: 142 NSALFRAVGEGNAQLV--AIFGGQGNTDDYFEELRDLY--QTYH------VLVGDLIKFS 191
Query: 90 G-VLVGIKVD--RGLKPYPLYPGEHITVGLDDLDVRLKQYKDAGARVAKW-----RV--- 138
L + K + GL+ + +W
Sbjct: 192 AETLSELIRTTLDAEKVFTQ--------GLN---------------ILEWLENPSNTPDK 228
Query: 139 --VLS--VSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEV--LMEG--DHT---- 186
+LS +S P + V++ LA Y V + G P E+ ++G H+
Sbjct: 229 DYLLSIPIS--CPLIGVIQ-----LAHYVVTAKLLGFTP---GELRSYLKGATGHSQGLV 278
Query: 187 ----IERCAEVT---EF------VLRTLFNELYTMRVCFEGLVLKSNMILPGKSAPQVSD 233
I AE F + LF F G ++ P S P
Sbjct: 279 TAVAI---AETDSWESFFVSVRKAITVLF---------FIG--VRCYEAYPNTSLP---- 320
Query: 234 EEIASNTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLSFSYGRALQ 293
P ++ S ++ S M S+ + + +Q
Sbjct: 321 ---------------PSILE--------DSLENNEGVPSPMLSISNLT-Q------EQVQ 350
Query: 294 ESV----------------LRAWNGKQDNVVVA 310
+ V L NG N+VV+
Sbjct: 351 DYVNKTNSHLPAGKQVEISLV--NG-AKNLVVS 380
Score = 38.4 bits (89), Expect = 0.003
Identities = 50/223 (22%), Positives = 79/223 (35%), Gaps = 77/223 (34%)
Query: 6 ENSVAMMLQA---GKGILAADESNATIQKRFKAIHLESTENSRRDYREMLFRAKDAMQYI 62
EN AM+ + GK +K FK I+ ST + R + +L A Q+
Sbjct: 1686 ENYSAMIFETIVDGK---------LKTEKIFKEINEHSTSYTFRSEKGLL----SATQFT 1732
Query: 63 SSILLYEETLYQNAQDGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLDVR 122
L TL + A +F DL S +GL P D
Sbjct: 1733 QPAL----TLMEKA----AFEDLKS-----------KGLIP---------------ADAT 1758
Query: 123 LKQYKDAGARVAKWRVVLSVSDVLPSMTVVKA------NMHI------LAR--YAVLCQN 168
AG + ++ + S++DV+ ++V+ M + L R Y ++ N
Sbjct: 1759 F-----AGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN 1813
Query: 169 AGLVPI-VEPEVLMEGDHTIERCAEVT----EFVLRTLFNELY 206
G V E L + +ER + T E V + N+ Y
Sbjct: 1814 PGRVAASFSQEAL---QYVVERVGKRTGWLVEIVNYNVENQQY 1853
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.7 bits (86), Expect = 0.003
Identities = 11/42 (26%), Positives = 14/42 (33%), Gaps = 16/42 (38%)
Query: 115 GLDDLDVRLKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANM 156
L L LK Y D D P++ +KA M
Sbjct: 21 ALKKLQASLKLYAD---------------DSAPALA-IKATM 46
Score = 28.4 bits (62), Expect = 2.2
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 12/34 (35%)
Query: 3 QDLENSVAMMLQAGKGILAADES------NATIQ 30
Q L+ LQA L AD+S AT++
Sbjct: 20 QALKK-----LQASLK-LYADDSAPALAIKATME 47
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide,
phosphoprotein, transferase; NMR {Saccharomyces
cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A*
1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Length = 164
Score = 31.1 bits (70), Expect = 0.42
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 78 DGTSFVDLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLD 117
DG ++ IS++G + + L G+ ITVG+
Sbjct: 96 DGNLLLNDISTNGTWLNGQKVEKNSNQLLSQGDEITVGVG 135
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA
splicing, transcription; NMR {Mus musculus}
Length = 140
Score = 30.4 bits (68), Expect = 0.55
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 71 TLYQNAQDGTSFV-DLISSSGVLVGIKVDRGLKPYPLYPGEHITVGLDDLDVRLK 124
L + F+ DL S+ G +G KP + ++ G L+
Sbjct: 81 ALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTRAYTLR 135
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain,
forkhead-associated domain (FHA) domain, PRE-mRNA
retention and splicing; 2.40A {Saccharomyces cerevisiae}
PDB: 2jkd_A
Length = 205
Score = 29.6 bits (66), Expect = 1.1
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 82 FVDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVG 115
+DL SS+G + + + + L G+ +T+
Sbjct: 157 VMDLDSSNGTCLNNVVIPGA-RYIELRSGDVLTLS 190
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 29.1 bits (65), Expect = 1.5
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 9/45 (20%)
Query: 186 TIERCAE----VTEFVLRTLFNELYTMRVCFE-GLVLKSNMILPG 225
+ C E + V R ++ VC GLVL ++
Sbjct: 20 IVLTCPECKVYPPKIVERFSEGDV----VCALCGLVLSDKLVDTR 60
Score = 26.4 bits (58), Expect = 8.7
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 14/73 (19%)
Query: 123 LKQYKDAGARVAKWRVVLSVSDVLPSMTVVKANMHILARYA---VLCQNAGLVPIVEPEV 179
+ + R + L++ P V I+ R++ V+C GLV +
Sbjct: 1 MMTRESIDKRAGRRGPNLNIVLTCPECKVYPPK--IVERFSEGDVVCALCGLV--LS--- 53
Query: 180 LMEGDHTIERCAE 192
D ++ +E
Sbjct: 54 ----DKLVDTRSE 62
>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+
and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia
coli} SCOP: c.1.12.3 PDB: 1fiy_A* 1qb4_A
Length = 883
Score = 28.5 bits (63), Expect = 2.4
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 137 RVVLSVSDVLPSMTVVKANMHILARYAVLCQNAGLVPIVEPEVLMEGDHTIERCAEVT 194
L + + M KA++ + Y + L P+ + E+ + I+ +
Sbjct: 761 STRLGMLE----MVFAKADLWLAEYYDQRLVDKALWPLGK-ELRNLQEEDIKVVLAIA 813
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain,
forkhead-associated domain (FHA) domain, PRE-mRNA
retention and splicing; 1.80A {Saccharomyces cerevisiae}
Length = 158
Score = 28.2 bits (62), Expect = 2.5
Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 73 YQNAQDGTSF--VDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVG 115
++N + +DL SS+G + + + + L G+ +T+
Sbjct: 99 FRNVRGILKCYVMDLDSSNGTCLNNVVIPGA-RYIELRSGDVLTLS 143
>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics,
PSI, protein structure initiative; 2.70A {Salmonella
typhimurium} SCOP: c.1.10.1
Length = 304
Score = 27.7 bits (61), Expect = 3.8
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 4/79 (5%)
Query: 226 KSAPQVSDEEIASNTIKIFKRVVPCAVQGIAFLSGGQSEQDATARLSAMNSMGDCPWRLS 285
K + + S+ + +R+ LS G E+ + G
Sbjct: 195 KVEMPLYGKGARSDLLTASQRLNGHINMPWVILSSGVDEKLFPRAVRVAMEAGAS----G 250
Query: 286 FSYGRALQESVLRAWNGKQ 304
F GRA+ SV+ + +
Sbjct: 251 FLAGRAVWSSVIGLPDTEL 269
>3gnf_B MVP, major vault protein; beta sheets, acetylation, cytoplasm,
phosphoprotein, ribonucleoprotein, structural protein;
2.10A {Mus musculus} PDB: 3gf5_A 3gng_A 1y7x_A
Length = 387
Score = 26.7 bits (59), Expect = 7.5
Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 17/114 (14%)
Query: 23 DESNATIQKRFKAIHLESTEN---SRRDYR----EMLFRAKDAMQYISSILLYEETL-YQ 74
D +A I A+HL + +N R E L +D ++ + YEE L
Sbjct: 218 DLVDAVILTEKTALHLRARQNFKDLRGVAHRTGEEWLVTVQDTEAHVPDV--YEEVLGVV 275
Query: 75 NAQDGTS-----FVDLISSSGV--LVGIKVDRGLKPYPLYPGEHITVGLDDLDV 121
+D + G L +V +G K + L PGE + G+ D+ V
Sbjct: 276 PITTLGPRHYCVILDPMGPDGKNQLGQKRVVKGEKSFFLQPGERLERGIQDVYV 329
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell
cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP:
b.26.1.2
Length = 127
Score = 26.5 bits (58), Expect = 8.7
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 77 QDGTSFVDLISSSGVLV-GIKVDRGLKPYPLYPGEHITVGLD 117
+DG ++ IS++G + G KV++ L G+ ITVG+
Sbjct: 67 EDGNLLLNDISTNGTWLNGQKVEKN-SNQLLSQGDEITVGVG 107
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.319 0.133 0.381
Gapped
Lambda K H
0.267 0.0549 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,700,274
Number of extensions: 119829
Number of successful extensions: 351
Number of sequences better than 10.0: 1
Number of HSP's gapped: 329
Number of HSP's successfully gapped: 22
Length of query: 339
Length of database: 5,693,230
Length adjustment: 93
Effective length of query: 246
Effective length of database: 3,438,538
Effective search space: 845880348
Effective search space used: 845880348
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.1 bits)