Query gi|254780653|ref|YP_003065066.1| phosphoglycerate kinase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 400 No_of_seqs 131 out of 2640 Neff 5.9 Searched_HMMs 33803 Date Wed Jun 1 16:04:19 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780653.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >16pk_A PGK, 3-phosphoglycerat 100.0 0 0 516.9 19.8 212 188-399 1-212 (212) 2 >1vpe_A Phosphoglycerate kinas 100.0 0 0 510.3 19.9 213 186-399 1-214 (216) 3 >1php_A 3-phosphoglycerate kin 100.0 0 0 506.9 16.0 185 2-187 1-185 (185) 4 >1ltk_A Phosphoglycerate kinas 100.0 0 0 501.3 19.3 212 187-399 1-214 (214) 5 >1php_A 3-phosphoglycerate kin 100.0 0 0 500.0 19.2 209 188-399 1-209 (209) 6 >1vpe_A Phosphoglycerate kinas 100.0 0 0 503.5 15.6 181 3-184 1-181 (182) 7 >1v6s_A Phosphoglycerate kinas 100.0 0 0 500.6 17.5 181 4-186 1-181 (190) 8 >1qpg_A PGK, 3-phosphoglycerat 100.0 0 0 499.0 18.5 211 188-399 1-213 (214) 9 >2cun_A Phosphoglycerate kinas 100.0 0 0 502.1 14.2 186 4-192 1-193 (208) 10 >1hdi_A PGK, phosphoglycerate 100.0 0 0 490.0 20.1 210 188-398 1-212 (213) 11 >1zmr_A Phosphoglycerate kinas 100.0 0 0 499.8 11.5 186 2-194 1-188 (195) 12 >1ltk_A Phosphoglycerate kinas 100.0 0 0 494.6 13.9 185 1-186 11-211 (211) 13 >1fw8_A PGK P72, phosphoglycer 100.0 0 0 495.1 12.7 210 189-399 1-212 (215) 14 >1qpg_A PGK, 3-phosphoglycerat 100.0 0 0 491.8 13.7 185 1-187 2-201 (201) 15 >16pk_A PGK, 3-phosphoglycerat 100.0 0 0 488.5 15.2 182 3-187 1-203 (203) 16 >1v6s_A Phosphoglycerate kinas 100.0 0 0 477.8 17.0 199 186-387 1-199 (200) 17 >1hdi_A PGK, phosphoglycerate 100.0 0 0 473.3 14.3 183 3-187 1-200 (200) 18 >1zmr_A Phosphoglycerate kinas 100.0 0 0 461.5 16.7 192 188-388 1-192 (192) 19 >2cun_A Phosphoglycerate kinas 100.0 0 0 461.6 14.8 196 188-388 1-202 (202) 20 >1fw8_A PGK P72, phosphoglycer 100.0 5.6E-43 0 297.3 6.5 118 72-190 2-133 (200) 21 >1fw8_A PGK P72, phosphoglycer 99.9 1.8E-27 5.4E-32 197.2 8.2 68 2-70 132-200 (200) 22 >1d5t_A Guanine nucleotide dis 74.9 5.2 0.00016 20.0 4.5 119 210-341 3-129 (135) 23 >1xpj_A Hypothetical protein; 71.9 6.8 0.0002 19.3 4.5 29 37-65 24-52 (126) 24 >1pjq_A CYSG, siroheme synthas 65.7 7.5 0.00022 19.0 3.6 44 4-62 1-44 (108) 25 >1kyq_A Met8P, siroheme biosyn 64.4 5.9 0.00017 19.7 2.9 39 10-63 8-46 (145) 26 >3lk7_A UDP-N-acetylmuramoylal 62.8 11 0.00032 18.0 4.1 45 187-231 35-79 (141) 27 >1ig3_A Thiamin pyrophosphokin 61.7 11 0.00034 17.9 5.0 140 149-323 2-150 (263) 28 >1ii2_A Phosphoenolpyruvate ca 60.3 6.5 0.00019 19.4 2.5 91 134-225 81-210 (283) 29 >2h9a_B CO dehydrogenase/acety 57.4 8.7 0.00026 18.6 2.7 103 172-300 106-211 (310) 30 >2yzs_A Putative uncharacteriz 53.2 1.4 4.1E-05 23.8 -1.9 60 14-73 15-78 (79) 31 >1f2t_B RAD50 ABC-ATPase; DNA 50.0 16 0.00048 16.9 3.2 49 295-347 58-113 (125) 32 >1ii8_B RAD50 ABC-ATPase; MRE1 46.9 18 0.00053 16.6 3.0 41 306-350 102-142 (151) 33 >1ewq_A DNA mismatch repair pr 44.9 9.6 0.00028 18.3 1.3 23 173-195 120-142 (215) 34 >2oln_A NIKD protein; flavopro 44.4 21 0.00063 16.1 3.8 95 210-305 1-101 (168) 35 >1aoe_A DHFR, dihydrofolate re 43.7 4.8 0.00014 20.3 -0.4 23 191-219 108-132 (192) 36 >2zos_A MPGP, mannosyl-3-phosp 42.8 8.5 0.00025 18.7 0.8 47 29-83 9-55 (165) 37 >2w9h_A DHFR, dihydrofolate re 41.9 22 0.00064 16.1 2.7 34 180-221 80-113 (159) 38 >1j3b_A ATP-dependent phosphoe 40.2 10 0.0003 18.2 0.9 93 132-225 89-221 (295) 39 >2hcu_A 3-isopropylmalate dehy 40.2 8.4 0.00025 18.7 0.4 57 114-170 58-123 (213) 40 >1zdr_A Dihydrofolate reductas 39.9 24 0.00072 15.7 2.8 44 170-220 72-115 (164) 41 >2fi1_A Hydrolase, haloacid de 39.5 25 0.00075 15.6 3.4 78 39-119 18-95 (124) 42 >3k2w_A Betaine-aldehyde dehyd 38.8 26 0.00077 15.5 5.3 165 147-322 23-191 (191) 43 >1w2l_A Cytochrome oxidase sub 38.5 15 0.00046 17.0 1.6 28 159-186 35-62 (64) 44 >3dau_A Dihydrofolate reductas 38.0 22 0.00066 16.0 2.3 39 173-220 75-113 (159) 45 >1mv8_A GMD, GDP-mannose 6-deh 37.9 27 0.0008 15.5 3.4 126 10-162 20-146 (148) 46 >2bty_A Acetylglutamate kinase 36.9 28 0.00082 15.4 4.1 47 12-65 18-64 (282) 47 >2q3e_A UDP-glucose 6-dehydrog 36.9 28 0.00082 15.4 3.4 42 13-59 1-42 (141) 48 >2w3w_A Dihydrofolate reductas 36.4 20 0.00059 16.3 1.9 74 297-374 46-123 (167) 49 >3dfz_A SIRC, precorrin-2 dehy 36.0 25 0.00074 15.6 2.3 24 188-213 30-53 (126) 50 >2go7_A Hydrolase, haloacid de 34.9 30 0.00089 15.2 3.3 26 40-65 18-43 (137) 51 >2jfg_A UDP-N-acetylmuramoylal 34.8 30 0.00089 15.1 3.9 59 176-235 26-85 (145) 52 >2brx_A Uridylate kinase; UMP 33.4 32 0.00094 15.0 5.3 202 177-389 8-237 (244) 53 >2o8b_A DNA mismatch repair pr 31.5 29 0.00086 15.2 2.1 23 173-195 143-165 (241) 54 >1jbw_A Folylpolyglutamate syn 31.0 35 0.001 14.7 5.0 47 175-221 22-69 (131) 55 >3ia4_A Dihydrofolate reductas 30.5 30 0.00088 15.2 2.0 43 170-220 73-115 (162) 56 >1ae1_A Tropinone reductase-I; 30.3 36 0.0011 14.7 5.9 76 1-100 8-83 (273) 57 >1wb9_A DNA mismatch repair pr 29.8 36 0.0011 14.6 2.3 42 172-213 102-151 (201) 58 >1ges_A Glutathione reductase; 26.3 42 0.0012 14.2 6.8 119 165-300 6-125 (142) 59 >1ytm_A Phosphoenolpyruvate ca 25.7 16 0.00048 16.9 -0.1 73 131-204 87-160 (249) 60 >2gag_B Heterotetrameric sarco 25.2 44 0.0013 14.1 6.6 80 245-324 62-141 (199) 61 >2vk2_A YTFQ, ABC transporter 23.8 46 0.0014 13.9 5.8 59 163-221 7-66 (134) 62 >2r6f_A Excinuclease ABC subun 23.1 48 0.0014 13.8 4.3 24 38-61 115-138 (204) 63 >3gaf_A 7-alpha-hydroxysteroid 23.1 48 0.0014 13.8 5.5 67 11-100 8-74 (256) 64 >1mqs_A SLY1 protein, SLY1P; S 23.0 48 0.0014 13.8 3.4 33 188-221 207-243 (269) 65 >3kjr_A Dihydrofolate reductas 22.6 49 0.0014 13.8 4.4 23 191-219 119-143 (267) 66 >2pju_A Propionate catabolism 22.4 49 0.0015 13.8 3.2 24 347-370 63-86 (89) 67 >2o8b_B DNA mismatch repair pr 22.1 40 0.0012 14.3 1.4 17 192-208 96-112 (262) 68 >1vdr_A DHFR, dihydrofolate re 22.0 50 0.0015 13.7 3.0 22 192-219 97-118 (162) 69 >1yqz_A Coenzyme A disulfide r 21.6 51 0.0015 13.6 6.7 101 175-294 12-112 (115) 70 >1ig0_A Thiamin pyrophosphokin 21.5 52 0.0015 13.6 5.0 95 172-268 20-122 (319) 71 >1k2x_A Putative L-asparaginas 20.9 53 0.0016 13.6 4.7 53 183-235 14-66 (68) 72 >1ytl_A Acetyl-COA decarbonyla 20.7 53 0.0016 13.5 4.0 58 173-232 21-78 (174) 73 >1pjc_A Protein (L-alanine deh 20.6 54 0.0016 13.5 1.8 79 35-116 12-92 (169) 74 >1oao_C CODH, carbon monoxide 20.6 54 0.0016 13.5 7.1 71 166-236 130-202 (324) 75 >1efp_A ETF, protein (electron 20.4 34 0.001 14.8 0.7 48 176-223 1-48 (128) 76 >1nkt_A Preprotein translocase 20.3 55 0.0016 13.5 7.3 76 34-119 15-91 (160) No 1 >>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis, transferase, bisubstrate, analog; HET: BIS EPE; 1.60A {Trypanosoma brucei} (A:204-415) Probab=100.00 E-value=0 Score=516.88 Aligned_cols=212 Identities=40% Similarity=0.683 Sum_probs=208.5 Q ss_pred CCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEE Q ss_conf 78718999607802557889987730688886205789999983014343333100001356889987530245543035 Q gi|254780653|r 188 KKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRD 267 (400) Q Consensus 188 ~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D 267 (400) .||+++||||||+||||++|++|++|||+|++||+||||||+|+|++||+|++|++.++.++++++++++++++|++|+| T Consensus 1 pRP~vaIlGGaKvsdKi~~l~~ll~k~D~iligG~ma~~Fl~A~G~~iG~s~~e~~~~~~a~~i~~~a~~~~~kI~lPvD 80 (212) T 16pk_A 1 PRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMAYTFLKAQGYSIGKSKCEESKLEFARSLLKKAEDRKVQVILPID 80 (212) T ss_dssp CSSEEEEECSSCSGGGHHHHHHHGGGCSEEEECTTHHHHHHHHHTCCCTTCCCCGGGHHHHHHHHHHHHHTTCEEECCSS T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCEEEECCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 65517998525434379999988753543653222888999983982544312455443466774320025157752010 Q ss_pred EECCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCC Q ss_conf 41134323233331025321201334576520035677764057767999766253227436588999999998611148 Q gi|254780653|r 268 VVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKER 347 (400) Q Consensus 268 ~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~~~ 347 (400) |+|+++++...+.++++.+++|++|+++||||+|++.|+++|.+|+|||||||||+||+++|+.||.+++++++++++++ T Consensus 81 ~~v~~~~~~~~~~~~~~~~~i~~~~~~~DIG~~Ti~~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~l~~aia~~t~~~ 160 (212) T 16pk_A 81 HVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQTIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGTHEH 160 (212) T ss_dssp EEEESSSSCCSSCEECSSSCCCTTCEEEEECHHHHHHHHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHHH T ss_pred EEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCC T ss_conf 33031123344430023222346436777777666677776651245889555021115616389999999999841448 Q ss_pred CCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCHHHHHHCCC Q ss_conf 8589974804699899848876864687507998998748998689884079 Q gi|254780653|r 348 RIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALSGH 399 (400) Q Consensus 348 ~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~~L~G~~LPgi~aL~~~ 399 (400) +++||||||||++|++++|+.++|+||||||||+|+||+|++||||+||+++ T Consensus 161 ~a~sivGGGdt~aa~~~~g~~~~~shvSTgGGA~L~~L~Gk~LPgieaL~~~ 212 (212) T 16pk_A 161 GLMSIIGGGDSASAAELSGEAKRMSHVSTGGGASLELLEGKTLPGVTVLDDK 212 (212) T ss_dssp CCEEEECSHHHHHHHHHTTCTTTSSEECSCHHHHHHHHTTCCCHHHHTSCBC T ss_pred CCEEEECCHHHHHHHHHCCCCCCCEEEECCHHHHHHHHCCCCCCHHHHHHCC T ss_conf 9989987789999999719745870797778999999879996257785069 No 2 >>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability, crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga maritima} (A:183-398) Probab=100.00 E-value=0 Score=510.29 Aligned_cols=213 Identities=42% Similarity=0.722 Sum_probs=206.8 Q ss_pred CCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCE Q ss_conf 66787189996078025578899877306888862057899999830143433331000013568899875302455430 Q gi|254780653|r 186 ESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVP 265 (400) Q Consensus 186 ~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP 265 (400) ||+||+++||||+|++|||++|++|+++||++++||+|||+||+|+|++||+|++|++..+.++++++++++++++|++| T Consensus 1 nP~rP~vaIlGGaKv~dKi~vi~~ll~k~D~iligG~ma~~Fl~a~G~~iG~s~~e~~~~~~~~~i~~~a~~~~~~i~lP 80 (216) T 1vpe_A 1 NPEKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDKIDLAKELVEKAKEKGVEIVLP 80 (216) T ss_dssp CCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTTHHHHHHHTSCCCTTSCCCGGGHHHHHHHHHHHHHTTCEEECC T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEECCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 14675069985353230799999888630323324237899999759967876312125678999999767529864333 Q ss_pred EEEECCCCCCCCCCCCCCCCCE-ECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 3541134323233331025321-201334576520035677764057767999766253227436588999999998611 Q gi|254780653|r 266 RDVVVAREMKTGIPTQVVSAQS-VPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLT 344 (400) Q Consensus 266 ~D~~v~~~~~~~~~~~~~~~~~-i~~~~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~ 344 (400) +|++|+++++.+.++..++.++ +|++|+++||||+|++.|+++|.+|+|||||||||+||+++|+.||.+|++++++++ T Consensus 81 ~D~~v~~~~~~~~~~~~~~~~~~ip~~~~~~DIGp~Ti~~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~l~~aia~~t 160 (216) T 1vpe_A 81 VDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFKQKLSDAKTVVWNGPMGVFEIDDFAEGTKQVALAIAALT 160 (216) T ss_dssp SEEEEESSCSTTCCCEEEETTTCCCTTCEEEEECHHHHHHHHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHH T ss_pred CEEEECCCCCCCCCCCEECCCCCCCCCCEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 10232100145664202221237987753213662257899987455767999756122136624179999999999873 Q ss_pred CCCCCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCHHHHHHCCC Q ss_conf 1488589974804699899848876864687507998998748998689884079 Q gi|254780653|r 345 KERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALSGH 399 (400) Q Consensus 345 ~~~~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~~L~G~~LPgi~aL~~~ 399 (400) + ++++||+|||||++|++++|+.++|+||||||||+|+||+|++||||+||++. T Consensus 161 ~-~~~~sivGGGdt~~ai~~~g~~~~~shvSTgGGA~Le~L~Gk~LPgv~aL~~~ 214 (216) T 1vpe_A 161 E-KGAITVVGGGDSAAAVNKFGLEDKFSHVSTGGGASLEFLEGKELPGIASMRIK 214 (216) T ss_dssp H-TTCEEEEESHHHHHHHHHTTCGGGSSEEESCHHHHHHHHTSSCCHHHHTSCBC T ss_pred C-CCCEEEEECHHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCHHHHHHHHC T ss_conf 2-89989993789999999729867860895777999999879997189988635 No 3 >>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus stearothermophilus} (A:1-185) Probab=100.00 E-value=0 Score=506.87 Aligned_cols=185 Identities=41% Similarity=0.702 Sum_probs=182.5 Q ss_pred CCCCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHH Q ss_conf 88877101001599689998201671318577725899998898999998898099991377888984733224788887 Q gi|254780653|r 2 SRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSI 81 (400) Q Consensus 2 ~~~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~ 81 (400) |.++||+|+ |++||+||||||||||+++|+|+|++||++++|||++|+++||||||+||||||+|+.++++||+||+++ T Consensus 1 m~~~ti~d~-d~~gK~VlvRvD~NvP~~~g~i~d~~RI~a~lpTI~~l~~~gakvvl~SHlGRPk~~~~~~~Sl~~va~~ 79 (185) T 1php_A 1 MNKKTIRDV-DVRGKRVFCRVDFNVPMEQGAITDDTRIRAALPTIRYLIEHGAKVILASHLGRPKGKVVEELRLDAVAKR 79 (185) T ss_dssp CCBCBGGGS-CCTTCEEEEECCCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCSSCCGGGCSHHHHHH T ss_pred CCCCCCCCC-CCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHH T ss_conf 997740003-7689989999415878529968975899999999999997899899984888999988865675999999 Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCHHHHHHHHCCCCCEEEECCHHHHCCCCCCEEEC Q ss_conf 64310133545666310255665531364648982424303432100024665312436424754404401137633302 Q gi|254780653|r 82 AESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGL 161 (400) Q Consensus 82 l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n~~~f~k~La~laDiyVnDAF~~aHR~haS~~gi 161 (400) |+++||++|.|++||+|+.++++++.|++|+|+||||+|||+||++|+++|+++||+++|+|||||||||||+|||++|| T Consensus 80 L~~~L~~~V~f~~d~~g~~~~~~i~~l~~g~illLENlRf~~~E~~~d~~fa~~La~l~DiyVnDAFg~aHR~haS~~gi 159 (185) T 1php_A 80 LGELLERPVAKTNEAVGDEVKAAVDRLNEGDVLLLENVRFYPGEEKNDPELAKAFAELADLYVNDAFGAAHRAHASTEGI 159 (185) T ss_dssp HHHHHTSCCEECSCSSSHHHHHHHHTCCTTCEEECCCGGGSHHHHHTCHHHHHHHHTTCSEEEECCGGGTTSCCTTTTGG T ss_pred HHHHHCCCCCEECCCCCHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCHHHHHHHHHHHCCEEEECCCCHHHCCCCCCCCH T ss_conf 99754567310003356779999971688878853535546400105499999987428899855400120248641240 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 33210003325565777653310166 Q gi|254780653|r 162 SHLLPSYIGRAMQKELSMLESCFSES 187 (400) Q Consensus 162 ~~~lps~aG~l~ekEi~~L~~~l~~~ 187 (400) |+++|+|||+|||+|+++|++++++| T Consensus 160 ~~~lp~~aG~l~e~El~~L~k~~~~P 185 (185) T 1php_A 160 AHYLPAVAGFLMEKELEVLGKALSNP 185 (185) T ss_dssp GGTSCEEECHHHHHHHHHHHHHHHSC T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHCC T ss_conf 21163777878999999999997388 No 4 >>1ltk_A Phosphoglycerate kinase; PGK, glycolysis, glycerol, open conformation, ADP complex, selenomethionine, transferase; HET: AMP; 3.00A {Plasmodium falciparum} (A:212-425) Probab=100.00 E-value=0 Score=501.31 Aligned_cols=212 Identities=42% Similarity=0.667 Sum_probs=202.9 Q ss_pred CCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCE Q ss_conf 67871899960780255788998773068888620578999998-30143433331000013568899875302455430 Q gi|254780653|r 187 SKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVA-QGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVP 265 (400) Q Consensus 187 ~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A-~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP 265 (400) |+||+++||||+|++|||++|++|+++||+|++||+||||||+| +|+++|+|++|+++++.++++++.+++++++|++| T Consensus 1 P~rP~vaIiGGaKvsdKi~vl~~ll~k~D~iligG~~a~~Fl~A~~g~~vg~sl~e~~~~~~a~~~~~~~~~~g~~I~lP 80 (214) T 1ltk_A 1 PQRPLLAILGGAKVSDKIQLIKNLLDKVDRXIIGGGXAYTFKKVLNNXKIGTSLFDEAGSKIVGEIXEKAKAKNVQIFLP 80 (214) T ss_dssp CCSSEEEEEECSCSGGGHHHHHHHHTTCSEEEEESSHHHHHHHHHHCCCCTTSCCCTTGGGTHHHHHHHHHHTTCEEECC T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 89882799837743038999998886246289632799999987327877863024566789999999998639965556 Q ss_pred EEEECCCCCCCCCCCCCC-CCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 354113432323333102-5321201334576520035677764057767999766253227436588999999998611 Q gi|254780653|r 266 RDVVVAREMKTGIPTQVV-SAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLT 344 (400) Q Consensus 266 ~D~~v~~~~~~~~~~~~~-~~~~i~~~~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~ 344 (400) +|++|+++++.+.+.+.+ +.+.+|++|+++||||+|++.|+++|++|+|||||||||+||+++|+.||.+|++++++++ T Consensus 81 vD~~v~~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~i~~aia~~t 160 (214) T 1ltk_A 81 VDFKIADNFDNNANTKFVTDEEGIPDNWXGLDAGPKSIENYKDVILTSKTVIWNGPQGVFEXPNFAKGSIECLNLVVEVT 160 (214) T ss_dssp SEEEEESSSSSSSCEEEEETTTCCCTTCEEEEECHHHHHHHHHHHHTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHH T ss_pred CCEEEEECCCCCCCCEEECCCCCCCCCCEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 66477503456776306324346764342111360667899987553888999898566567625379999999999984 Q ss_pred CCCCCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCHHHHHHCCC Q ss_conf 1488589974804699899848876864687507998998748998689884079 Q gi|254780653|r 345 KERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALSGH 399 (400) Q Consensus 345 ~~~~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~~L~G~~LPgi~aL~~~ 399 (400) + +++|||||||||++|++++|+.++|+||||||||+|+||+|++||||+||++. T Consensus 161 ~-~~~~sivGGGdt~~ai~~~g~~~~~shvSTGGGA~L~~L~Gk~LPgv~aL~~k 214 (214) T 1ltk_A 161 K-KGAITIVGGGDTASLVEQQNKKNEISHVSTGGGASLELLEGKELPGVLALSNK 214 (214) T ss_dssp H-TTCEEEECCSTTHHHHHHHTCGGGSSEECCCSHHHHHHHTTCCCHHHHTSCC- T ss_pred H-CCCEEEEECHHHHHHHHHCCCCCCCEEEECCHHHHHHHHCCCCCCHHHHHCCC T ss_conf 1-89979993889999999739856883897677999999879996436673169 No 5 >>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus stearothermophilus} (A:186-394) Probab=100.00 E-value=0 Score=500.01 Aligned_cols=209 Identities=41% Similarity=0.693 Sum_probs=204.3 Q ss_pred CCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEE Q ss_conf 78718999607802557889987730688886205789999983014343333100001356889987530245543035 Q gi|254780653|r 188 KKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRD 267 (400) Q Consensus 188 ~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D 267 (400) +||+++||||||+||||++|++|+++||+|++||+|||+||+|+|++||+|++|++.++.+++++++|++++++|++|+| T Consensus 1 erP~vaIlGGaKvsdKi~~l~~ll~k~D~iligG~~a~~Fl~a~G~~iG~s~~e~~~~~~~~~~~~~ak~~~~ki~~p~D 80 (209) T 1php_A 1 DRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEEDKIELAKSFMEKAKEKGVRFYMPVD 80 (209) T ss_dssp CSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTHHHHHHHHTTCCCTTSCCCGGGHHHHHHHHHHHHHHTCEEECCSE T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCE T ss_conf 99769998467377689999999753241676418999999986997773334300277999999876643984058842 Q ss_pred EECCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCC Q ss_conf 41134323233331025321201334576520035677764057767999766253227436588999999998611148 Q gi|254780653|r 268 VVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKER 347 (400) Q Consensus 268 ~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~~~ 347 (400) ++|+++++.+.++...++++||++|+++||||+|++.|+++|++|+|||||||||+||+++|+.||.+++++++++ + T Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~DIG~~Ti~~~~~~I~~akti~wNGP~GvfE~~~F~~GT~~i~~aia~~---s 157 (209) T 1php_A 81 VVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRDVIRESKLVVWNGPMGVFEMDAFAHGTKAIAEALAEA---L 157 (209) T ss_dssp EEEESSSSTTSCEEEEEGGGCCTTCEEEEECHHHHHHHHHHHHTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHC---T T ss_pred EEECCCCCCCCCCEEEEHHHCCCCCEEEEECHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHC---C T ss_conf 4520035565672586523415686589827178999998645478899987835534663428999999999965---8 Q ss_pred CCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCHHHHHHCCC Q ss_conf 8589974804699899848876864687507998998748998689884079 Q gi|254780653|r 348 RIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALSGH 399 (400) Q Consensus 348 ~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~~L~G~~LPgi~aL~~~ 399 (400) +++||||||||++|++++|+.++|+||||||||+|+||+|++||||++|+|+ T Consensus 158 ~a~sivGGGdt~~ai~~~g~~~~~shvSTgGGA~L~~L~Gk~LPgieaL~~~ 209 (209) T 1php_A 158 DTYSVIGGGDSAAAVEKFGLADKMDHISTGGGASLEFMEGKQLPGVVALEDK 209 (209) T ss_dssp TCEEEECSHHHHHHHHHTTCGGGSSEECSCTHHHHHHHTTCCCHHHHTSCBC T ss_pred CCEEEEECHHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCCHHHHHCCC T ss_conf 9869994759999999749867884795677999999879997458774069 No 6 >>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability, crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga maritima} (A:1-182) Probab=100.00 E-value=0 Score=503.48 Aligned_cols=181 Identities=39% Similarity=0.662 Sum_probs=178.5 Q ss_pred CCCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH Q ss_conf 88771010015996899982016713185777258999988989999988980999913778889847332247888876 Q gi|254780653|r 3 RLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIA 82 (400) Q Consensus 3 ~~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l 82 (400) +++||+|+ |++||+||||+|||||+++|+|+|++||++++|||++|+++||||||+||||||+|+..+.+||+||+++| T Consensus 1 ~~~ti~d~-d~~gK~VlvRvD~NVP~~~g~I~dd~RI~~~lpTI~~ll~~gakvvl~SHlGRPk~~~~~~~SL~~va~~L 79 (182) T 1vpe_A 1 EKMTIRDV-DLKGKRVIMRVDFNVPVKDGVVQDDTRIRAALPTIKYALEQGAKVILLSHLGRPKGEPSPEFSLAPVAKRL 79 (182) T ss_dssp CBCBGGGS-CCTTCEEEEECCCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCSSCCGGGCSHHHHHHH T ss_pred CCCCHHHC-CCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHH T ss_conf 98762003-74799899994347751299378758999999999999978998999827889999879766879999999 Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCHHHHHHHHCCCCCEEEECCHHHHCCCCCCEEECC Q ss_conf 43101335456663102556655313646489824243034321000246653124364247544044011376333023 Q gi|254780653|r 83 ESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLS 162 (400) Q Consensus 83 ~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n~~~f~k~La~laDiyVnDAF~~aHR~haS~~gi~ 162 (400) +++|+++|.|++||+|+.++++++.|++|+|+||||+|||+||++|+++|+++||+++|+|||||||||||+||||+||| T Consensus 80 ~~~L~~~V~f~~d~~g~~~~~~i~~l~~G~ilLLEN~RF~~~E~~n~~~fa~~LA~l~DiyVnDAFg~aHR~haS~~gi~ 159 (182) T 1vpe_A 80 SELLGKEVKFVPAVVGDEVKKAVEELKEGEVLLLENTRFHPGETKNDPELAKFWASLADIHVNDAFGTAHRAHASNVGIA 159 (182) T ss_dssp HHHHTSCCEEESCSSSHHHHHHHHTCCTTEEEEECCGGGSTHHHHTCHHHHHHHHTTCSEEEECCGGGTTSCCTTTTGGG T ss_pred HHHHCCCEEEEECCCCHHHHHHHHCCCCCCEEEEHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHCCCCCEECHH T ss_conf 98636536885035865889986147887589726555320223324778999860666256254246650587500222 Q ss_pred CCCCCCCCHHHHHHHHHHHHHC Q ss_conf 3210003325565777653310 Q gi|254780653|r 163 HLLPSYIGRAMQKELSMLESCF 184 (400) Q Consensus 163 ~~lps~aG~l~ekEi~~L~~~l 184 (400) +++|||||+|||+|+++|++++ T Consensus 160 ~~lp~~aG~l~ekEl~~l~k~l 181 (182) T 1vpe_A 160 QFIPSVAGFLMEKEIKFLSKVT 181 (182) T ss_dssp GTSCEEECHHHHHHHHHHHHHH T ss_pred HHCCHHCCHHHHHHHHHHHHHH T ss_conf 4260000157898898764220 No 7 >>1v6s_A Phosphoglycerate kinase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 1.50A {Thermus thermophilus} (A:1-180,A:381-390) Probab=100.00 E-value=0 Score=500.62 Aligned_cols=181 Identities=40% Similarity=0.603 Sum_probs=177.4 Q ss_pred CCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 87710100159968999820167131857772589999889899999889809999137788898473322478888764 Q gi|254780653|r 4 LRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIAE 83 (400) Q Consensus 4 ~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l~ 83 (400) |+||+|+ |++||+||||+|||||+++|+|+|++||++++|||+||+++|||+||+||||||+++ ++++||+||+++|+ T Consensus 1 ~~ti~d~-d~~gK~VlvRvD~NVP~~~G~I~dd~RI~a~lpTIk~ll~~gakvvl~SHlGRP~~~-~~~~Sl~~va~~L~ 78 (190) T 1v6s_A 1 MRTLLDL-DPKGKRVLVRVDYNVPVQDGKVQDETRILESLPTLRHLLAGGASLVLLSHLGRPKGP-DPKYSLAPVGEALR 78 (190) T ss_dssp CCBGGGS-CCTTCEEEEECCCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCSSC-CGGGCSHHHHHHHH T ss_pred CCCHHHC-CCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC-CCCCCHHHHHHHHH T ss_conf 9730215-878999999940476763993897489999999999999789989999448999998-97712799999997 Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCHHHHHHHHCCCCCEEEECCHHHHCCCCCCEEECCC Q ss_conf 31013354566631025566553136464898242430343210002466531243642475440440113763330233 Q gi|254780653|r 84 SILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSH 163 (400) Q Consensus 84 ~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n~~~f~k~La~laDiyVnDAF~~aHR~haS~~gi~~ 163 (400) ++||++|.|++||+|+.++++++.|++|+|+||||+|||+||++|+++|+++||+++|+|||||||||||+|||++|||+ T Consensus 79 ~lLg~~V~f~~d~~g~~~~~~i~~l~~G~IlLLENlRf~~~Ee~n~~~fa~~LA~l~DiyVNDAF~~aHR~haS~~gi~~ 158 (190) T 1v6s_A 79 AHLPEARFAPFPPGSEEARREAEALRPGEVLLLENVRFEPGEEKNDPELSARYARLGEAFVLDAFGSAHRAHASVVGVAR 158 (190) T ss_dssp HHCTTEEECCSCTTSHHHHHHHHTCCTTCEEECSCGGGSTTTTTTCHHHHHHHGGGCSEEEECCGGGTTSCCCCCCCGGG T ss_pred HHCCCCEEEEECCCCCCHHHCCCCCCCCCEEEEHHHHHCCCCCCCCHHHHHHHHHCCCEEEECCHHHHHHHCCCHHCCCC T ss_conf 52375326542024431000013466652787521332454000662776766523777886214666551422105200 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCC Q ss_conf 21000332556577765331016 Q gi|254780653|r 164 LLPSYIGRAMQKELSMLESCFSE 186 (400) Q Consensus 164 ~lps~aG~l~ekEi~~L~~~l~~ 186 (400) ++|||||++||+|+++|+++++. T Consensus 159 ~lps~aG~lmekEl~~L~k~l~~ 181 (190) T 1v6s_A 159 LLPAYAGFLMEKEVRALSRLLKT 181 (190) T ss_dssp TSCEEECHHHHHHHHHHHTTTSC T ss_pred CCHHHHHHHHHHHHHHHHHHHHC T ss_conf 02056789999999999999859 No 8 >>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A {Saccharomyces cerevisiae} (A:202-415) Probab=100.00 E-value=0 Score=498.99 Aligned_cols=211 Identities=37% Similarity=0.606 Sum_probs=201.8 Q ss_pred CCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHH-HHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEE Q ss_conf 787189996078025578899877306888862057899999-8301434333310000135688998753024554303 Q gi|254780653|r 188 KKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLV-AQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPR 266 (400) Q Consensus 188 ~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~-A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~ 266 (400) .||+++|+||||+||||++|++|+++||+|++||+|||+||+ |+|++||+|++|++.++.++++++.+++++++|++|+ T Consensus 1 tRP~vaIlGGaKvsdKi~~l~~Ll~kvD~iligG~~a~~Fl~aa~G~~ig~s~~e~~~~~~~~~~~~~~~~~~~~I~lPv 80 (214) T 1qpg_A 1 TRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPV 80 (214) T ss_dssp CSSEEEEECSSCSGGGHHHHHHHTTTCSEEEECGGGHHHHHHHHSCCCCCSCCCCHHHHHHHHHHHHHHHHHTCEEECCS T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECC T ss_conf 99869998446353589999988752022551528999998742335578516665400028999999997499473024 Q ss_pred EEECCCCCCCCCCCC-CCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHC Q ss_conf 541134323233331-0253212013345765200356777640577679997662532274365889999999986111 Q gi|254780653|r 267 DVVVAREMKTGIPTQ-VVSAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTK 345 (400) Q Consensus 267 D~~v~~~~~~~~~~~-~~~~~~i~~~~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~ 345 (400) |++|+++++.+.+.+ +.+.+.+|++|+++||||+|++.|+++|++|+|||||||||+||+++|+.||.++++++++.++ T Consensus 81 D~~v~~~~~~~~~~~~v~~~~~ip~~~~~~DIG~~Ti~~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~i~~aia~~~~ 160 (214) T 1qpg_A 81 DFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSA 160 (214) T ss_dssp EEEEESSSSSSCCCCEEETTTCCCTTCEEEEECHHHHHHHHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHH T ss_pred CEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCC T ss_conf 67984454554673252563546876500345577899999999877988997675453565240689999999997116 Q ss_pred CCCCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCHHHHHHCCC Q ss_conf 488589974804699899848876864687507998998748998689884079 Q gi|254780653|r 346 ERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALSGH 399 (400) Q Consensus 346 ~~~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~~L~G~~LPgi~aL~~~ 399 (400) .+++||+|||||++|++++|+.++|+||||||||+|+||+|++||||+||+++ T Consensus 161 -~~~~sivGGGdt~~Ai~~~g~~~~~shvSTGGGA~L~~L~Gk~LPgieaL~~~ 213 (214) T 1qpg_A 161 -AGNTVIIGGGDTATVAKKYGVTDKISHVSTGGGASLELLEGKELPGVAFLSEK 213 (214) T ss_dssp -HTCEEEECCHHHHHHHHHTTCGGGSSEECCCTHHHHHHHTSCCCHHHHTSCBC T ss_pred -CCCEEEEECHHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCCHHHHHHHC T ss_conf -89839995789999999749856882593678999999879997279887508 No 9 >>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000, riken structural genomics/proteomics initiative, RSGI, NPPSFA; HET: 3PG; 2.10A {Pyrococcus horikoshii OT3} (A:1-188,A:391-410) Probab=100.00 E-value=0 Score=502.07 Aligned_cols=186 Identities=32% Similarity=0.555 Sum_probs=180.3 Q ss_pred CCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 87710100159968999820167131857772589999889899999889809999137788898473322478888764 Q gi|254780653|r 4 LRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIAE 83 (400) Q Consensus 4 ~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l~ 83 (400) |+||+|+ |++||+||||+|||||+++|+|+|++||++++|||++|+++||||||+||||||+|+ +++||.||+++|+ T Consensus 1 i~ti~D~-dl~gK~VlvRvD~NVPi~~g~I~dd~RI~a~lpTIk~Ll~~gakVvl~SHlGRP~~~--~~~SL~pva~~Ls 77 (208) T 2cun_A 1 MFRLEDF-NFHNKTVFLRVDLNSPMKDGKIISDARFKAVLPTIRYLIESGAKVVIGTHQGKPYSE--DYTTTEEHARVLS 77 (208) T ss_dssp CCBGGGS-CCTTCEEEEECCCCCCEETTEECCCHHHHHTHHHHHHHHHTTCEEEEECCCSCTTCT--TCCCSHHHHHHHH T ss_pred CCCCCCC-CCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC--CCCCHHHHHHHHH T ss_conf 9860006-878999999942686530995897789999999999999789989997568999998--7675578999999 Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCHH-------HHHHHHCCCCCEEEECCHHHHCCCCC Q ss_conf 31013354566631025566553136464898242430343210002-------46653124364247544044011376 Q gi|254780653|r 84 SILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEERNDP-------DFVRMLSRNGDFYINDAFSVSHRAHA 156 (400) Q Consensus 84 ~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n~~-------~f~k~La~laDiyVnDAF~~aHR~ha 156 (400) ++||++|.|++||+|+.++++++.|++|+|+||||+|||+||++|++ +|+++||+++|+|||||||||||+|| T Consensus 78 ~~Lg~~V~fv~d~~G~~a~~~i~~l~~G~ilLLENvRF~~eE~~n~~~e~~~~~~~ak~LA~l~DiyVNDAFg~aHR~ha 157 (208) T 2cun_A 78 ELLDQHVEYIEDIFGRYAREKIKELKSGEVAILENLRFSAEEVKNKPIEECEKTFLVKKLSKVIDYVVNDAFATAHRSQP 157 (208) T ss_dssp HHHTSCEEECSCSSSHHHHHHHHTCCTTCEEECSCGGGBTTTTSCCCHHHHTTSHHHHHHHTTCSEEEECCGGGTTCCCH T ss_pred HHHCCCCCCCCCCCHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCHHHHHHCCC T ss_conf 98587522354211144543101466750797054012654111345033219999999852152002164466650354 Q ss_pred CEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEE Q ss_conf 333023321000332556577765331016678718 Q gi|254780653|r 157 SITGLSHLLPSYIGRAMQKELSMLESCFSESKKPLV 192 (400) Q Consensus 157 S~~gi~~~lps~aG~l~ekEi~~L~~~l~~~~~P~v 192 (400) |++|||+++|+|||+|||+|+++|++++++|.-|.+ T Consensus 158 S~~gi~~~lp~~AG~LmekEi~~L~k~~~~p~~~~~ 193 (208) T 2cun_A 158 SLVGFARIKPMIMGFLMEKEIEALMRAYYSKELPVL 193 (208) T ss_dssp HHHTTTTTSCEEECHHHHHHHHHHHHHHTCCCCHHH T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHH T ss_conf 323301246420048999999875432127787379 No 10 >>1hdi_A PGK, phosphoglycerate kinase; phosphotransferase, ternary complex, glycolysis; HET: AMP 3PG; 1.8A {Sus scrofa} (A:201-413) Probab=100.00 E-value=0 Score=489.97 Aligned_cols=210 Identities=39% Similarity=0.607 Sum_probs=201.8 Q ss_pred CCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEE Q ss_conf 7871899960780255788998773068888620578999998-301434333310000135688998753024554303 Q gi|254780653|r 188 KKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVA-QGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPR 266 (400) Q Consensus 188 ~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A-~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~ 266 (400) +||+++|+||||+||||++|++|++|+|++++||+|+|||++| +|++||+|++|+++.+.++++++.+++++++|++|+ T Consensus 1 ~rP~vaIlGGaKvsdKi~vl~~Ll~k~d~lilgGgla~~fl~a~~G~~iG~s~~e~~~~~~~~~~~~~ak~~~~~i~lP~ 80 (213) T 1hdi_A 1 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEAGKKIVKNLMSKAAANGVKITLPV 80 (213) T ss_dssp CSSEEEEECCSCSGGGHHHHHHHHTTCSEEEECGGGHHHHHHHHHCCCBTTCCCCTTGGGTHHHHHHHHHHHTCEEECCC T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 99869997402112289999978840788999145899999986598678763105667776899999877224667885 Q ss_pred EEECCCCCCCCCCCCC-CCCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHC Q ss_conf 5411343232333310-253212013345765200356777640577679997662532274365889999999986111 Q gi|254780653|r 267 DVVVAREMKTGIPTQV-VSAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTK 345 (400) Q Consensus 267 D~~v~~~~~~~~~~~~-~~~~~i~~~~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~ 345 (400) |++|+.+++.+.+++. .+.+.+|++|+++||||+|++.|+++|++|+|||||||||+||.++|+.||.+++++++++++ T Consensus 81 D~~v~~~~~~~~~~~~~~~~~~i~~~~~~~DIGp~Ti~~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~i~~aia~~~~ 160 (213) T 1hdi_A 81 DFVTADKFDEQAKIGQATVASGIPAGWMGLDCGPKSSAKYSEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVVKATS 160 (213) T ss_dssp EEEEESSSSTTCCEEEEETTTCBCTTCEEEEECHHHHHHHHHHHHHCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHH T ss_pred CEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCC T ss_conf 33422333443333333333444410100225616799999985248779997871342366253899999999997415 Q ss_pred CCCCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCHHHHHHCC Q ss_conf 48858997480469989984887686468750799899874899868988407 Q gi|254780653|r 346 ERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALSG 398 (400) Q Consensus 346 ~~~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~~L~G~~LPgi~aL~~ 398 (400) ++|+||+|||||++|++++|+.++|+||||||||+|+||+|++||||++|++ T Consensus 161 -~ga~sivGGGdt~~ai~~~g~~~~~shvSTGGGA~L~~L~Gk~LPgieaL~~ 212 (213) T 1hdi_A 161 -RGCITIIGGGDTATCCAKWNTEDNVSHVSTGGGASLELLEGKVLPGVDALSN 212 (213) T ss_dssp -TTCEEEECTTHHHHHHHHTTCTTTSSEECSCHHHHHHHHTTCCCHHHHTSCB T ss_pred -CCCEEEEECHHHHHHHHHCCCCCCCEEEECCHHHHHHHHCCCCCCHHHHHHC T ss_conf -8988999488999999975997784089787799999987999726867413 No 11 >>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A {Escherichia coli} (A:1-181,A:374-387) Probab=100.00 E-value=0 Score=499.78 Aligned_cols=186 Identities=34% Similarity=0.549 Sum_probs=179.1 Q ss_pred CCCCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC-CCCCCCCHHHHHH Q ss_conf 888771010015996899982016713185777258999988989999988980999913778889-8473322478888 Q gi|254780653|r 2 SRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQS-KSDKDCSLFKVVS 80 (400) Q Consensus 2 ~~~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg-~~~~~~Sl~~v~~ 80 (400) |+++||+|+ |++||+||||||||||+++|+|+|++||++++|||++|+++||||||+||||||+| ++++.+||+||++ T Consensus 1 M~~~ti~d~-d~~gK~VlvRvD~NVPi~~g~I~dd~RI~a~lpTI~~ll~~gakvvl~SHlGRPk~~~~~~~~SL~~va~ 79 (195) T 1zmr_A 1 MSVIKMTDL-DLAGKRVFIRADLNVPVKDGKVTSDARIRASLPTIELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVN 79 (195) T ss_dssp -CCCBGGGS-CCTTCEEEEECCCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSSCBTTBCCGGGCSHHHHH T ss_pred CCCCCCCCC-CCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHCHHHHHH T ss_conf 997605544-7589999999604777639918973999999999999997899899980489998998580216156999 Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCHHHHHHHHCCCCCEEEECCHHHHCCCCCCEEE Q ss_conf 76431013354566631025566553136464898242430343210002466531243642475440440113763330 Q gi|254780653|r 81 IAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITG 160 (400) Q Consensus 81 ~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n~~~f~k~La~laDiyVnDAF~~aHR~haS~~g 160 (400) +|+++|+++|.|++||+|+++ |++|+|+||||+|||+||++|++.|+++||+++|+|||||||||||+|||++| T Consensus 80 ~L~~~Lg~~V~fv~D~~g~~~------l~~GeilLLENlRf~~eE~~nd~~fa~~LA~l~DiyVNDAFg~aHR~haS~~g 153 (195) T 1zmr_A 80 YLKDKLSNPVRLVKDYLDGVD------VAEGELVVLENVRFNKGEKKDDETLSKKYAALCDVFVMDAFGTAHRAQASTHG 153 (195) T ss_dssp HHHHHCSSCEEEESCCTTCCC------CCTTCEEEECCGGGSTTTTTTCHHHHHHHHHTCSEEEECCGGGTTSCCCCCCC T ss_pred HHHHHHCCCCEEEEECCCHHH------CCCCCEEEHHHHHHCCCCCCCCCHHHHHHCCCCCEEEECCHHHHHCCCCCCCC T ss_conf 999985898434210256022------28763887043451547655641223200455618995460033046753112 Q ss_pred CCCCCC-CCCCHHHHHHHHHHHHHCCCCCCCEEEE Q ss_conf 233210-0033255657776533101667871899 Q gi|254780653|r 161 LSHLLP-SYIGRAMQKELSMLESCFSESKKPLVAI 194 (400) Q Consensus 161 i~~~lp-s~aG~l~ekEi~~L~~~l~~~~~P~v~I 194 (400) ||+++| ||||+|||+|+++|++++++|--|.++. T Consensus 154 i~~~lp~s~AG~lmekEl~~L~~~~~~p~~~~~~~ 188 (195) T 1zmr_A 154 IGKFADVACAGPLLAAELDALGKALKEPVLPAVAM 188 (195) T ss_dssp HHHHSSEEEECHHHHHHHHHHHHHHSSCCCHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH T ss_conf 16665677889999999999999982888715999 No 12 >>1ltk_A Phosphoglycerate kinase; PGK, glycolysis, glycerol, open conformation, ADP complex, selenomethionine, transferase; HET: AMP; 3.00A {Plasmodium falciparum} (A:1-211) Probab=100.00 E-value=0 Score=494.60 Aligned_cols=185 Identities=35% Similarity=0.615 Sum_probs=179.6 Q ss_pred CCCCCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCC-EEEEEECCCCCCCCCCCCCCHHHHH Q ss_conf 988877101001599689998201671318577725899998898999998898-0999913778889847332247888 Q gi|254780653|r 1 MSRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKA-KVVIFSHLGRPQSKSDKDCSLFKVV 79 (400) Q Consensus 1 M~~~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~a-kvii~SH~GRPkg~~~~~~Sl~~v~ 79 (400) |+.++||+|+.|++||+||||||||||+++|+|+||+||++++|||+||+++|| ||||+||||||+|+.++.+||+||+ T Consensus 11 m~~~~tl~d~~d~~gK~VlvRvD~NvPi~~g~I~Dd~RI~a~lpTIk~ll~~ga~kVil~SHlGRPkg~~~~~~SL~~va 90 (211) T 1ltk_A 11 LGNKLSISDLKDIKNKKVLVRVDFNVPIENGIIKDTNRITATLPTINHLKKEGASKIILISHCGRPDGLRNEKYTLKPVA 90 (211) T ss_dssp SSSCCBSSSCCCCTTCEEEEEECCCCCEETTEESCTHHHHHTHHHHHHHHTTCCSEEEEECCCSCCTTSCCGGGCSHHHH T ss_pred HCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHH T ss_conf 03676002122258998999941156513993897889999999999999879983999857888999889875759999 Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCC---------------CCHHHHHHHHCCCCCEEE Q ss_conf 87643101335456663102556655313646489824243034321---------------000246653124364247 Q gi|254780653|r 80 SIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEE---------------RNDPDFVRMLSRNGDFYI 144 (400) Q Consensus 80 ~~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~---------------~n~~~f~k~La~laDiyV 144 (400) ++|+++|+++|.|++||+|+.++++++.|++|+|+||||+|||+||+ +|+++|+++||++||+|| T Consensus 91 ~~L~~lLg~~V~f~~d~~g~~~~~~i~~l~~G~vlLLENlRf~~eE~~~~~~~~~~~~~~e~~n~~~~a~~LA~l~DiyV 170 (211) T 1ltk_A 91 ETLKGLLGEEVLFLNDCVGKEVEDKINAAKENSVILLENLRFHIEEEGKGVDANGNKVKANKEDVEKFQNDLTKLADVFI 170 (211) T ss_dssp HHHHHHHTSCCEECSCSSSHHHHHHHHSSCTTEEEECCCGGGSHHHHSEEECTTCCEEECCHHHHHHHHHHHHTSCSEEE T ss_pred HHHHHHHCCCCEECCCCCCHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCEEE T ss_conf 99999868775012566660167665227888889970375223123467432101221011217999999864167876 Q ss_pred ECCHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCC Q ss_conf 544044011376333023321000332556577765331016 Q gi|254780653|r 145 NDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLESCFSE 186 (400) Q Consensus 145 nDAF~~aHR~haS~~gi~~~lps~aG~l~ekEi~~L~~~l~~ 186 (400) |||||||||+|||++||| ++|+|||+|||+|+++|++++++ T Consensus 171 NDAFg~aHR~haS~~gi~-~~~s~aG~lmekEl~~L~~~~~n 211 (211) T 1ltk_A 171 NDAFGTAHRAHSSXVGVK-LNVKASGFLXKKELEYFSKALEN 211 (211) T ss_dssp EECTTSCSSCCHHHHCCC-CSEEEECHHHHHHHHHHHHHHTS T ss_pred ECCCCCCCCCCCCHHHHH-HCCCCCHHHHHHHHHHHHHHHHC T ss_conf 145532343555211110-01354225699999999999848 No 13 >>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycolysis, mutant, permutation, permuted sequence, protein folding; 2.30A {Saccharomyces cerevisiae} (A:132-346) Probab=100.00 E-value=0 Score=495.05 Aligned_cols=210 Identities=37% Similarity=0.609 Sum_probs=201.2 Q ss_pred CCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHH-HHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEE Q ss_conf 87189996078025578899877306888862057899999-83014343333100001356889987530245543035 Q gi|254780653|r 189 KPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLV-AQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRD 267 (400) Q Consensus 189 ~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~-A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D 267 (400) ||+++|+||+|++|||++|++|++|||+|++||+|||+||+ ++|++||+|++|+++++.++++++.+++++++|++|+| T Consensus 1 RP~vaIlGGaKv~dki~vl~~ll~k~D~iligG~~a~~Fl~aa~G~~ig~s~~e~~~~~~~~~~~~~~~~~~~~I~lPvD 80 (215) T 1fw8_A 1 RPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVD 80 (215) T ss_dssp CSSEEEEEECSCSTTTHHHHHHHHTTCSEEEEEGGGHHHHHHHHSCCCCCSCCCCHHHHHHHHHHHHHHHHHTCEEECCS T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 89838998402075799999999963670897137999999875032358630446788899999998654113466566 Q ss_pred EECCCCCCCCCCCC-CCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCC Q ss_conf 41134323233331-02532120133457652003567776405776799976625322743658899999999861114 Q gi|254780653|r 268 VVVAREMKTGIPTQ-VVSAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKE 346 (400) Q Consensus 268 ~~v~~~~~~~~~~~-~~~~~~i~~~~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~~ 346 (400) |+|+++++.+.+++ +.+.+++|++|+++||||+|++.|+++|++|+|||||||||+||+++|+.||.++++++++.++ T Consensus 81 ~~v~~~~~~~~~~~~~~~~~~ip~~~~~~DIG~~Ti~~~~~~I~~aktI~wNGP~GvfE~~~F~~GT~~i~~aia~~~~- 159 (215) T 1fw8_A 81 FIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSA- 159 (215) T ss_dssp EEEEESSSSTTCCEEEEETTTCCCTTCEEEEECHHHHHHHHHHHHHCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHH- T ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHC- T ss_conf 4688655457765444464123566662114430358999987412777999777024236625189999999999603- Q ss_pred CCCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCHHHHHHCCC Q ss_conf 88589974804699899848876864687507998998748998689884079 Q gi|254780653|r 347 RRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALSGH 399 (400) Q Consensus 347 ~~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~~L~G~~LPgi~aL~~~ 399 (400) .+++||+|||||++|++++|+.++|+||||||||+|+||+|++||||+||++. T Consensus 160 ~~~~sivGGGdt~~A~~~~g~~~~~shiSTGGGA~Le~L~Gk~LPgieaL~~~ 212 (215) T 1fw8_A 160 AGNTVIIGGGDTATVAKKYGVTDKISHVSTGGGASLELLEGKELPGVAFLSEK 212 (215) T ss_dssp HTTCEEEECTTHHHHHHHHTTCGGGSSEECSCSHHHHHHHTTCCCHHHHTSCS T ss_pred CCCCEEEEECHHHHHHHHHCCCCCCCEEEECCHHHHHHHHCCCCCCHHHHHHH T ss_conf 68988999487999999972986797079787799999987999708999986 No 14 >>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A {Saccharomyces cerevisiae} (A:1-201) Probab=100.00 E-value=0 Score=491.83 Aligned_cols=185 Identities=36% Similarity=0.610 Sum_probs=180.1 Q ss_pred CCCCCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCE-EEEEECCCCCCCCCCCCCCHHHHH Q ss_conf 9888771010015996899982016713185777258999988989999988980-999913778889847332247888 Q gi|254780653|r 1 MSRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAK-VVIFSHLGRPQSKSDKDCSLFKVV 79 (400) Q Consensus 1 M~~~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~ak-vii~SH~GRPkg~~~~~~Sl~~v~ 79 (400) ||+++||+|+ |++||+||||||||||+++|+|+|++||++++|||++|+++||| ||++||+|||+|+.++++||+||+ T Consensus 2 m~~~~tl~d~-d~~gK~VlvRvD~NvPi~~g~I~dd~RI~a~lpTIk~l~~~gak~Vil~sHlGrpkg~~~~~~SL~~va 80 (201) T 1qpg_A 2 LSSKLSVQDL-DLKDKRVFIRVDFNVPLDGKKITSNQRIVAALPTIKYVLEHHPRYVVLASHLGQPNGERNEKYSLAPVA 80 (201) T ss_dssp TTSBCBGGGC-CCTTCEEEEECCCCCCBSSSSBSCCHHHHHHHHHHHHHHTTCCSEEEEECCCSCCCSSCCGGGCSHHHH T ss_pred CCCCCCHHHC-CCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHH T ss_conf 8667853542-757998999940566634996897589999999999999879988999733899999889876869999 Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCC--------------CCHHHHHHHHCCCCCEEEE Q ss_conf 87643101335456663102556655313646489824243034321--------------0002466531243642475 Q gi|254780653|r 80 SIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEE--------------RNDPDFVRMLSRNGDFYIN 145 (400) Q Consensus 80 ~~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~--------------~n~~~f~k~La~laDiyVn 145 (400) ++|+++||++|.|++||+|+.++++++.|++|+|+||||+|||+||+ +|++.|+++||++||+||| T Consensus 81 ~~L~~lLg~~V~f~~d~~g~~~~~~i~~l~~GeilLLENlRF~~eE~~~~~~~~~~~~~e~~n~~~fa~~LA~l~DiyVn 160 (201) T 1qpg_A 81 KELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENLRYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADVYIN 160 (201) T ss_dssp HHHHHHHTSCCEEESCSSSHHHHHHHHTCCTTEEEEECCGGGSHHHHTEEEETTEEEECCHHHHHHHHHHHHHTCSEEEE T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEC T ss_conf 99999878971885576650455433116888689975022143300155432233322243289999998631557431 Q ss_pred CCHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 440440113763330233210003325565777653310166 Q gi|254780653|r 146 DAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLESCFSES 187 (400) Q Consensus 146 DAF~~aHR~haS~~gi~~~lps~aG~l~ekEi~~L~~~l~~~ 187 (400) ||||+|||+|||++||+ ++|+|||+|||+|+++|++++++| T Consensus 161 DAFg~aHR~haS~~gi~-~~~s~aG~lmekEi~~L~~~~~~P 201 (201) T 1qpg_A 161 DAFGTAHRAHSSMVGFD-LPQRAAGFLLEKELKYFGKALENP 201 (201) T ss_dssp CCGGGTTSCCHHHHCCC-CSCEEECHHHHHHHHHHHHHHSSC T ss_pred CCCCCCCCCCCEEECCC-CCCCCCHHHHHHHHHHHHHHHHCC T ss_conf 53110020444011346-685513187999999999997098 No 15 >>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis, transferase, bisubstrate, analog; HET: BIS EPE; 1.60A {Trypanosoma brucei} (A:1-203) Probab=100.00 E-value=0 Score=488.47 Aligned_cols=182 Identities=32% Similarity=0.647 Sum_probs=174.9 Q ss_pred CCCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC-------------- Q ss_conf 887710100159968999820167131857772589999889899999889809999137788898-------------- Q gi|254780653|r 3 RLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSK-------------- 68 (400) Q Consensus 3 ~~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~-------------- 68 (400) +++||+|+ |++||+||||||||||+++|+|+|++||++++|||++|+++||||||+||||||||+ T Consensus 1 ~~~ti~d~-d~~gK~VlvRvD~NVPi~~g~I~dd~RI~a~lpTI~~ll~~gakvil~SHlGRPk~~~~~~~~~~~~~~~~ 79 (203) T 16pk_A 1 EKKSINEC-DLKGKKVLIRVDFNVPVKNGKITNDYRIRSALPTLKKVLTEGGSCVLMSHLGRPKGIPMAQAGKIRSTGGV 79 (203) T ss_dssp CBCBGGGS-CCTTCEEEEEECCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCCBCGGGHHHHHHTTCC T ss_pred CCCCCCCC-CCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC T ss_conf 98740123-87899899993567555599589748899999999999978998999916899898765532222222331 Q ss_pred --CCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCC----CHHHHHHHHCCCCCE Q ss_conf --47332247888876431013354566631025566553136464898242430343210----002466531243642 Q gi|254780653|r 69 --SDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEER----NDPDFVRMLSRNGDF 142 (400) Q Consensus 69 --~~~~~Sl~~v~~~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~----n~~~f~k~La~laDi 142 (400) .++++||.||+++|+++|+++|.|++||+|. +++++.|++|+|+||||+|||+||++ |+++|+++||+++|+ T Consensus 80 ~~~~~~~SL~~va~~L~~lLg~~V~f~~d~~g~--~~~i~~l~~G~vlLLEN~RF~~eE~~~~~~n~~~fa~~LA~l~Di 157 (203) T 16pk_A 80 PGFQQKATLKPVAKRLSELLLRPVTFAPDCLNA--ADVVSKMSPGDVVLLENVRFYKEEGSKKAKDREAMAKILASYGDV 157 (203) T ss_dssp TTCCGGGCSHHHHHHHHHHHTSCCEEESCTTSC--HHHHHTCCTTCEEEECCGGGBGGGGCSSHHHHHHHHHHHHTTCSE T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCH--HHHHHCCCCCEEEEECCHHCCCCCCCCCCCCHHHHHHHHHCCCCE T ss_conf 236833470889999999867563235432100--001212566406861100023432332333027889988524758 Q ss_pred EEECCHHHHCCCCCCEEECCCCCCC-CCCHHHHHHHHHHHHHCCCC Q ss_conf 4754404401137633302332100-03325565777653310166 Q gi|254780653|r 143 YINDAFSVSHRAHASITGLSHLLPS-YIGRAMQKELSMLESCFSES 187 (400) Q Consensus 143 yVnDAF~~aHR~haS~~gi~~~lps-~aG~l~ekEi~~L~~~l~~~ 187 (400) |||||||||||+||||+|||+++|+ |||+|||+|+++|++++++| T Consensus 158 yVnDAFg~aHR~haS~~gi~~~lp~~~aG~L~ekEi~~L~~~~~~P 203 (203) T 16pk_A 158 YISDAFGTAHRDSATMTGIPKILGNGAAGYLMEKEISYFAKVLGNP 203 (203) T ss_dssp EEEECGGGTTSCCTTTTHHHHHHTCCEECHHHHHHHHHHHHHHSCC T ss_pred EEECCCCHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 9945620210467513412200102567999999999899997297 No 16 >>1v6s_A Phosphoglycerate kinase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 1.50A {Thermus thermophilus} (A:181-380) Probab=100.00 E-value=0 Score=477.80 Aligned_cols=199 Identities=40% Similarity=0.695 Sum_probs=194.8 Q ss_pred CCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCE Q ss_conf 66787189996078025578899877306888862057899999830143433331000013568899875302455430 Q gi|254780653|r 186 ESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVP 265 (400) Q Consensus 186 ~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP 265 (400) ||+||+++|+||||++|||++|++|++|||+|++||+|||+||+|+|++||+|++|++..+.++++++++++++++|++| T Consensus 1 nP~rP~vaIlGGaKv~dKi~vl~~ll~k~D~il~gG~ian~Fl~A~G~~iG~s~~e~~~~~~~~~~~~~ak~~~~~i~~P 80 (200) T 1v6s_A 1 DPERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRLDLAKDLLGRAEALGVRVYLP 80 (200) T ss_dssp SCCSSEEEEECCSCGGGTHHHHHHHGGGCSEEEECSTTHHHHHHHTTCBCTTCCCCGGGHHHHHHHHHHHHHHTCEEECC T ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHEEEEEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 43675089983454023699999887526368754307799999769867862444123566777777765305654322 Q ss_pred EEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHC Q ss_conf 35411343232333310253212013345765200356777640577679997662532274365889999999986111 Q gi|254780653|r 266 RDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTK 345 (400) Q Consensus 266 ~D~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~ 345 (400) +|++|+.+++.+.+++..+.+++|++|+++||||+|++.|+++|++|+|||||||||+||+++|+.||.+|++++++ T Consensus 81 ~D~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~Ti~~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~i~~aia~--- 157 (200) T 1v6s_A 81 EDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFARALEGARTVFWNGPMGVFEVPPFDEGTLAVGQAIAA--- 157 (200) T ss_dssp SEEEEESSCCTTCCCEEEETTBCCTTCEEEEECHHHHHHHHHHTTTCSEEEEESCSSCTTSTTTTHHHHHHHHHHHT--- T ss_pred EEEEECCCCCCCCCCCCCCCCEECCHHHHHCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH--- T ss_conf 01100122367753335551000110222100103466788765036459997574551357440799999999985--- Q ss_pred CCCCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHCC Q ss_conf 488589974804699899848876864687507998998748 Q gi|254780653|r 346 ERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEG 387 (400) Q Consensus 346 ~~~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~~L~G 387 (400) .++|+||+|||||++|++++|+.++|+||||||||+|+|||. T Consensus 158 ~s~a~sivGGGdt~~ai~~~g~~~~~shvSTGGGA~L~~Le~ 199 (200) T 1v6s_A 158 LEGAFTVVGGGDSVAAVNRLGLKERFGHVSTGGGASLEFLEK 199 (200) T ss_dssp CSSCEEEEESHHHHHHHHTTTCGGGSSEECCSSSHHHHHHHH T ss_pred CCCCEEEEECHHHHHHHHHCCCCCCCEEEECCHHHHHHHHCC T ss_conf 589979994889999999739867870898888999999879 No 17 >>1hdi_A PGK, phosphoglycerate kinase; phosphotransferase, ternary complex, glycolysis; HET: AMP 3PG; 1.8A {Sus scrofa} (A:1-200) Probab=100.00 E-value=0 Score=473.27 Aligned_cols=183 Identities=37% Similarity=0.596 Sum_probs=174.2 Q ss_pred CCCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCE-EEEEECCCCCCCC-CCCCCCHHHHHH Q ss_conf 88771010015996899982016713185777258999988989999988980-9999137788898-473322478888 Q gi|254780653|r 3 RLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAK-VVIFSHLGRPQSK-SDKDCSLFKVVS 80 (400) Q Consensus 3 ~~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~ak-vii~SH~GRPkg~-~~~~~Sl~~v~~ 80 (400) .++||+|+ |++|||||||||||||+++|+|+|++||++++|||++|+++||| |||+||||||+++ +++++||+||++ T Consensus 1 ~~~tl~d~-d~~gK~VlvRvD~NVP~~~g~I~Dd~RI~a~lpTI~~l~~~gak~Vil~sHlgRPk~~~~~~~~SL~~va~ 79 (200) T 1hdi_A 1 NKLTLDKL-NVKGKRVVMRVDFNVPMAAAQITNNARIKAAVPSIKFCLDDGAKSVVLMSHLGRPDGSPMPDKYSLQPVAA 79 (200) T ss_dssp CBCBGGGS-CCTTCEEEEECCCCCCBSSSSBSCCHHHHHHHHHHHHHHHTTCSEEEEECCCSCCCSSCCTTTSCSHHHHH T ss_pred CCCCHHHC-CCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHH T ss_conf 98766334-85899899995046557599588789999999999999987999899987888999997885458799999 Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCC---------------CCCCHHHHHHHHCCCCCEEEE Q ss_conf 76431013354566631025566553136464898242430343---------------210002466531243642475 Q gi|254780653|r 81 IAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSE---------------EERNDPDFVRMLSRNGDFYIN 145 (400) Q Consensus 81 ~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~---------------E~~n~~~f~k~La~laDiyVn 145 (400) +|+++||++|.|++||+|+.+++++..|++|+|+||||+|||++ |++|++.|+++||+++|+||| T Consensus 80 ~L~~~Lg~~V~f~~d~~g~~~~~~i~~l~~G~illLENvRF~~eE~~~~~~~~~~~~~~E~~~~~~~a~~LA~~~DiyVn 159 (200) T 1hdi_A 80 ELKSALGKAVLFLKDCVGPAVEKACADPAAGSVILLENLRFHVEEEGKGKDASGNKAAGEPAKIKAFRASLSALGDVYVN 159 (200) T ss_dssp HHHHHHTSCCEECSCSSSHHHHHHHHSCCTTEEEECCCGGGSHHHHTEEECTTSCEEECCHHHHHHHHHHHHHTCSEEEE T ss_pred HHHHHHCCCEEEECCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCEEEE T ss_conf 99998586567741542056776652035676799530003642124663135543001100149999998630567650 Q ss_pred CCHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 440440113763330233210003325565777653310166 Q gi|254780653|r 146 DAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLESCFSES 187 (400) Q Consensus 146 DAF~~aHR~haS~~gi~~~lps~aG~l~ekEi~~L~~~l~~~ 187 (400) ||||+|||+|||++||+ ++|+|||++||+|+++|++++++| T Consensus 160 DAF~~aHR~haS~~gi~-~~~~~aG~l~ekEi~~L~~~l~~P 200 (200) T 1hdi_A 160 DAFGTAHRAHSSMVGVN-LPKKAGAFLMKKELNYFAAAAESP 200 (200) T ss_dssp CCGGGTTCCCHHHHCCC-CSCEEECHHHHHHHHHHHHHHTSC T ss_pred CCCHHHHCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHCCC T ss_conf 54004311450101101-343024779999999987763379 No 18 >>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A {Escherichia coli} (A:182-373) Probab=100.00 E-value=0 Score=461.52 Aligned_cols=192 Identities=46% Similarity=0.782 Sum_probs=186.3 Q ss_pred CCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEE Q ss_conf 78718999607802557889987730688886205789999983014343333100001356889987530245543035 Q gi|254780653|r 188 KKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRD 267 (400) Q Consensus 188 ~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D 267 (400) .||+++||||||+||||++|++|++|||+|++||+||||||+|+|++||+|++|++.++.|+++++++ +|++|+| T Consensus 1 aRP~vaIlGGaKvsdKi~~l~~ll~kvD~iligG~ma~~Fl~a~G~~ig~s~~e~~~~~~a~~ll~~~-----~i~lp~d 75 (192) T 1zmr_A 1 ARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIANTFIAAQGHDVGKSLYEADLVDEAKRLLTTC-----NIPVPSD 75 (192) T ss_dssp SSSEEEEEEESCTTTTHHHHHHHHTTCSEEEEEEHHHHHHHHHTTCCCTTCSCCGGGHHHHHHHHTTS-----CCCCCSE T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC-----CCCCCCC T ss_conf 99879998231265678999988740444786316899999981981387520101567899876402-----7651332 Q ss_pred EECCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCC Q ss_conf 41134323233331025321201334576520035677764057767999766253227436588999999998611148 Q gi|254780653|r 268 VVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKER 347 (400) Q Consensus 268 ~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~~~ 347 (400) ++|+++++.+.++++++.+++|++|+++||||+|++.|+++|++|+|||||||||+||+++|+.||.+++++++ ++ T Consensus 76 ~~va~~~~~~~~~~~~~~~~i~~~~~~~DIGp~Ti~~~~~~i~~akti~wNGP~GvfE~~~F~~GT~~i~~a~a----~~ 151 (192) T 1zmr_A 76 VRVATEFSETAPATLKSVNDVKADEQILDIGDASAQELAEILKNAKTILWNGPVGVFEFPNFRKGTEIVANAIA----DS 151 (192) T ss_dssp EEEESSSSSSCCCEEEEGGGCCTTCEEEEECHHHHHHHHHHHHHCSEEEEESCSBCTTSGGGCHHHHHHHHHHH----HS T ss_pred EECCCCCCCCCCCEEEECCCCCCCCEEEEEHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH----HC T ss_conf 66122234688735962422456760255002445789987505657999533454256625389999999998----68 Q ss_pred CCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCC Q ss_conf 85899748046998998488768646875079989987489 Q gi|254780653|r 348 RIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGK 388 (400) Q Consensus 348 ~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~~L~G~ 388 (400) +++||+|||||++|++++|+.++|+||||||||+|+||||| T Consensus 152 ~~~sviGGGdt~~a~~~~gl~d~~shvSTgGGA~L~~LeGk 192 (192) T 1zmr_A 152 EAFSIAGGGDTLAAIDLFGIADKISYISTGGGAFLEFVEGK 192 (192) T ss_dssp SSEEEECSHHHHHHHHHHTCGGGSSEECCCTHHHHHHHTTC T ss_pred CCEEEECCHHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCC T ss_conf 99899968899999998098578818977789999998799 No 19 >>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000, riken structural genomics/proteomics initiative, RSGI, NPPSFA; HET: 3PG; 2.10A {Pyrococcus horikoshii OT3} (A:189-390) Probab=100.00 E-value=0 Score=461.64 Aligned_cols=196 Identities=29% Similarity=0.462 Sum_probs=184.9 Q ss_pred CCCEEEEEEECCHHHHHHHHHHHHH--CCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCHHHH----HHHHHHHHCCCC Q ss_conf 7871899960780255788998773--0688886205789999983014343333100001356----889987530245 Q gi|254780653|r 188 KKPLVAIVGGSKVSTKITLLINLVK--KVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNVH----QIAWEAKRSACE 261 (400) Q Consensus 188 ~~P~v~IiGGaKisdKi~~i~~L~~--k~D~iiigG~lantfL~A~G~~IG~Sl~e~~~~~~ak----~i~~~a~~~~~~ 261 (400) +||+++||||||+||||++|++|++ +||+|++||+||||||+|+|++||+|++|++..+.++ ++.+.+++++++ T Consensus 1 erP~vaIlGGaKvsdKi~vl~~Ll~~~kvD~iiigG~ma~~Fl~a~G~~ig~sl~e~~~~~~~~~~i~~~~~~~~~~~~~ 80 (202) T 2cun_A 1 DSPKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANVFTLAKGFDLGRKNVEFMKKKGLLDYVKHAEEILDEFYPY 80 (202) T ss_dssp CSCEEEEECSSCHHHHHHHHHHHHHTTSCSEEEECHHHHHHHHHHHTCCCCHHHHHHHHTTTGGGGHHHHHHHHHHHGGG T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHCCCCCCCCCC T ss_conf 77659997456310168999987500246189972442022555432114532110455521454300000123234541 Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 54303541134323233331025321201334576520035677764057767999766253227436588999999998 Q gi|254780653|r 262 IIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVA 341 (400) Q Consensus 262 I~lP~D~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia 341 (400) |++|+||+|+++++...+..+++.++||++|+++||||+|++.|+++|++|+|||||||||+||+++|+.||.+++++++ T Consensus 81 i~lP~D~~~~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~i~~aia 160 (202) T 2cun_A 81 IRTPVDFAVDYKGERVEIDLLSENRGLLHQYQIMDIGKRTAEKYREILMKARIIVANGPMGVFEREEFAIGTVEVFKAIA 160 (202) T ss_dssp EECCSEEEEEETTEEEEEESSSGGGGGGGTSCEEEECHHHHHHHHHHHHTCSEEEEESCSSCTTSGGGCHHHHHHHHHHH T ss_pred EEECCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHH T ss_conf 33212111211134555331103434445565777126666665456612998999664345565406499999999998 Q ss_pred HHHCCCCCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCC Q ss_conf 61114885899748046998998488768646875079989987489 Q gi|254780653|r 342 KLTKERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGK 388 (400) Q Consensus 342 ~~~~~~~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~~L~G~ 388 (400) +++++||+|||||++|++++|+.+ |+||||||||+|+||||| T Consensus 161 ----~~~a~sivGGGdt~~a~~~~g~~~-~shvSTgGGA~Le~LeGk 202 (202) T 2cun_A 161 ----DSPAFSVLGGGHSIASIQKYGITG-ITHISTGGGAMLSFFAGE 202 (202) T ss_dssp ----HSSSEEEEECGGGGGGGGGSCCCC-CSEECSCSHHHHHHHTTC T ss_pred ----HCCCEEEECCHHHHHHHHHCCCCC-CCEEECCHHHHHHHHCCC T ss_conf ----289989995769999999749988-815956779999998799 No 20 >>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycolysis, mutant, permutation, permuted sequence, protein folding; 2.30A {Saccharomyces cerevisiae} (A:1-131,A:347-416) Probab=100.00 E-value=5.6e-43 Score=297.25 Aligned_cols=118 Identities=35% Similarity=0.579 Sum_probs=113.7 Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCC--------------CCHHHHHHHHC Q ss_conf 3224788887643101335456663102556655313646489824243034321--------------00024665312 Q gi|254780653|r 72 DCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEE--------------RNDPDFVRMLS 137 (400) Q Consensus 72 ~~Sl~~v~~~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~--------------~n~~~f~k~La 137 (400) ++||+||+++|+++||++|.|++||+|+.++++++.|++|+|+||||+|||+||+ +|+++|+++|| T Consensus 2 ~~SL~~va~~L~~~Lg~~V~f~~d~~g~~~~~~i~~l~~GeilLLENvRF~~eE~~~~~~~~~~~~~e~~~~~~fa~~LA 81 (200) T 1fw8_A 2 KYSLAPVAKELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENLRYHIEEEGSRKVDGQKVKASKEDVQKFRHELS 81 (200) T ss_dssp TTCSHHHHHHHHHHHTSCEEECSCSSSHHHHHHHHTSCTTEEEECCCGGGSHHHHSEEEETTEEEECCHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHH T ss_conf 30569999999999789838568778878999997079997899852688812013654320000221012599999988 Q ss_pred CCCCEEEECCHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCC Q ss_conf 43642475440440113763330233210003325565777653310166787 Q gi|254780653|r 138 RNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLESCFSESKKP 190 (400) Q Consensus 138 ~laDiyVnDAF~~aHR~haS~~gi~~~lps~aG~l~ekEi~~L~~~l~~~~~P 190 (400) +++|+|||||||||||+|||++||+ ++|+|||+|||+|+++|++++++|+.+ T Consensus 82 ~l~DvyVnDAFg~aHR~haS~~gi~-~~~~~aG~LmekEi~~L~~~~~~p~m~ 133 (200) T 1fw8_A 82 SLADVYINDAFGTAHRAHSSMVGFD-LPQRAAGFLLEKELKYFGKALENPTSS 133 (200) T ss_dssp TTCSEEEECCGGGTTSCCHHHHCCC-CSCEEECHHHHHHHHHHHHHHHSCSSC T ss_pred HHCCEEEECCCCHHCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHCCCHHH T ss_conf 5488998743000112344443424-675655267899999999986378331 No 21 >>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycolysis, mutant, permutation, permuted sequence, protein folding; 2.30A {Saccharomyces cerevisiae} (A:1-131,A:347-416) Probab=99.94 E-value=1.8e-27 Score=197.21 Aligned_cols=68 Identities=38% Similarity=0.652 Sum_probs=64.1 Q ss_pred CCCCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCE-EEEEECCCCCCCCCC Q ss_conf 888771010015996899982016713185777258999988989999988980-999913778889847 Q gi|254780653|r 2 SRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAK-VVIFSHLGRPQSKSD 70 (400) Q Consensus 2 ~~~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~ak-vii~SH~GRPkg~~~ 70 (400) |.++||+|+ |++||+||||||||||+++|+|+|++||++++|||++|+++||| |||+||||||||+.| T Consensus 132 m~~~ti~d~-d~~gK~VlvRvD~NvPi~~g~I~Dd~RI~a~lpTI~~ll~~gak~vIL~SHlGRPkgk~d 200 (200) T 1fw8_A 132 SSKLSVQDL-DLKDKRVFIRVDFNVPLDGKKITSNQRIVAALPTIKYVLEHHPRYVVLASHLGRPNGERN 200 (200) T ss_dssp SCSCBGGGS-CCTTCEEEEECCCCCCBSSSSBSCTHHHHHHHHHHHHHHHTCCSEEEEECCCSCCCSSCC T ss_pred HHCCCCCCC-CCCCCEEEEEEECCCCCCCCCCCCHHHHHHHCCHHHHHHHCCCCEEEEHHHCCCCCCCCC T ss_conf 313010232-346847999985267666010430677875231579998559828986864389987889 No 22 >>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution; 1.04A {Bos taurus} (A:1-41,A:233-288,A:396-433) Probab=74.93 E-value=5.2 Score=20.04 Aligned_cols=119 Identities=12% Similarity=0.085 Sum_probs=66.0 Q ss_pred HHHCCCEEEECHHHHHHHH----HHHCCCCCCCCCCCCC---CHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCC Q ss_conf 7730688886205789999----9830143433331000---01356889987530245543035411343232333310 Q gi|254780653|r 210 LVKKVDKLVIGGGMANSFL----VAQGMGVGRSLCQRDF---SDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQV 282 (400) Q Consensus 210 L~~k~D~iiigG~lantfL----~A~G~~IG~Sl~e~~~---~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~~~ 282 (400) |-++.+-++||||.+-.+. .-.|+++ .++|... -+.+..+.+.++++|.+|++-..+.--..-+....... T Consensus 3 ~~~~~~vvviG~G~~g~~~a~~l~~~g~~v--~~ie~~~~~d~~l~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~~~v~~ 80 (135) T 1d5t_A 3 MDEEYDVIVLGTGLTECILSGIMSVNGKKV--LHMDRNPYYLGELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVK 80 (135) T ss_dssp CCSBCSEEEECCSHHHHHHHHHHHHTTCCE--EEECSSSSSTTHHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEE T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCE--EEECCCCCCHHHHHHHHHHHHHHCCCEEECCCCEEEEEEECCEEEEEE T ss_conf 998768899895989999999999889979--998899999689999999999852690984893479999899999999 Q ss_pred CCCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCC-CHHHHHHHHHHHHH Q ss_conf 253212013345765200356777640577679997662532274-36588999999998 Q gi|254780653|r 283 VSAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIE-PFDRATVEVAHYVA 341 (400) Q Consensus 283 ~~~~~i~~~~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~GvfE~~-~F~~GT~~l~~~ia 341 (400) .+-+.++.+..++-+|..+. ...|-.+....+.. .++.+..-+.-.+. T Consensus 81 ~dG~~i~aD~VI~a~G~~~~-----------~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (135) T 1d5t_A 81 SEGEVARCKQLICDPSYSES-----------QVFCSCSYDATTHFETTCNDIKDIYKRMA 129 (135) T ss_dssp ETTEEEECSEEEECGGGTTT-----------CEEECCCCCSCSBSHHHHHHHHHHHHHHH T ss_pred ECCEEEECCEEEECCCCCCC-----------CEEECCCCCCCCCHHHHHHHHHHHHHHHC T ss_conf 59989994989999000888-----------88977898865577899999999999853 No 23 >>1xpj_A Hypothetical protein; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics, unknown function; HET: TLA; 2.30A {Vibrio cholerae} (A:) Probab=71.91 E-value=6.8 Score=19.33 Aligned_cols=29 Identities=14% Similarity=0.024 Sum_probs=24.7 Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 89999889899999889809999137788 Q gi|254780653|r 37 TRIERVVPTILELVEKKAKVVIFSHLGRP 65 (400) Q Consensus 37 ~RI~~~~pTI~~l~~~~akvii~SH~GRP 65 (400) .=+..+..+|+.+.++|.++|+.|.|+.. T Consensus 24 ~~~p~v~e~l~~l~~~G~~ivi~Tnq~~~ 52 (126) T 1xpj_A 24 LPRLDVIEQLREYHQLGFEIVISTARNMR 52 (126) T ss_dssp CBCHHHHHHHHHHHHTTCEEEEEECTTTT T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 85799999999999789999999566532 No 24 >>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} (A:1-108) Probab=65.66 E-value=7.5 Score=19.05 Aligned_cols=44 Identities=18% Similarity=0.266 Sum_probs=33.1 Q ss_pred CCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECC Q ss_conf 87710100159968999820167131857772589999889899999889809999137 Q gi|254780653|r 4 LRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHL 62 (400) Q Consensus 4 ~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~ 62 (400) |+++.=+.|++||+|+| +-.|++ ...+.+.|.+.|++++++.-- T Consensus 1 M~~~p~~~~l~gk~vlV-------iG~G~i--------G~~~a~~L~~~G~~v~vi~~~ 44 (108) T 1pjq_A 1 MDHLPIFCQLRDRDCLI-------VGGGDV--------AERKARLLLEAGARLTVNALT 44 (108) T ss_dssp CCCEEEEECCBTCEEEE-------ECCSHH--------HHHHHHHHHHTTBEEEEEESS T ss_pred CCCCCCEEECCCCEEEE-------ECCCHH--------HHHHHHHHHHCCCEEEEECCC T ss_conf 98016168838983999-------889899--------999999998689879999389 No 25 >>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} (A:1-145) Probab=64.44 E-value=5.9 Score=19.71 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=30.7 Q ss_pred HHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 001599689998201671318577725899998898999998898099991377 Q gi|254780653|r 10 LRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLG 63 (400) Q Consensus 10 ~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~G 63 (400) +.|++||+||| +..|++ +.-.++.|++.||+|.++|..- T Consensus 8 ~l~l~~k~VLV-------iGgG~v--------A~rk~~~ll~~ga~v~vva~~~ 46 (145) T 1kyq_A 8 AHQLKDKRILL-------IGGGEV--------GLTRLYKLXPTGCKLTLVSPDL 46 (145) T ss_dssp EECCTTCEEEE-------EEESHH--------HHHHHHHHGGGTCEEEEEEEEE T ss_pred CEEECCCEEEE-------ECCCHH--------HHHHHHHHHHCCCEEEEEECCC T ss_conf 16818986999-------899899--------9999999997899699990898 No 26 >>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} (A:311-451) Probab=62.85 E-value=11 Score=18.01 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=36.1 Q ss_pred CCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHH Q ss_conf 678718999607802557889987730688886205789999983 Q gi|254780653|r 187 SKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQ 231 (400) Q Consensus 187 ~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~ 231 (400) +.++.++|+||-+=.+....+.+....++.+++.|.-......+. T Consensus 35 ~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 79 (141) T 3lk7_A 35 DNTKVILIAGGLDRGNEFDELIPDITGLKHXVVLGESASRVKRAA 79 (141) T ss_dssp CGGGEEEEECCSCCSCCCGGGHHHHTTCSEEEECSTTHHHHHHHH T ss_pred CCCCCEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHH T ss_conf 788716964774556659999999867988999799989999999 No 27 >>1ig3_A Thiamin pyrophosphokinase; beta barrel, alpha/beta/alpha sandwich, transferase; HET: VIB; 1.90A {Mus musculus} (A:) Probab=61.67 E-value=11 Score=17.87 Aligned_cols=140 Identities=19% Similarity=0.219 Sum_probs=74.2 Q ss_pred HHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHH Q ss_conf 44011376333023321000332556577765331016678718999607802557889987730688886205789999 Q gi|254780653|r 149 SVSHRAHASITGLSHLLPSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFL 228 (400) Q Consensus 149 ~~aHR~haS~~gi~~~lps~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL 228 (400) +-.||.|+|--+-. --|..|++++..+.-...+...+.++|++|..+++. ...+..+.|.++-.=+=|+-.+ T Consensus 2 ~~~~~~~~~~~~~~-----~~~~~m~~~~~~~~~l~~~~~~~~~~Iv~ng~~~~~---~~~~~~~~~~~I~aDgGa~~l~ 73 (263) T 1ig3_A 2 GSSHHHHHHSSGLV-----PRGSHMEHAFTPLEPLLPTGNLKYCLVVLNQPLDAR---FRHLWKKALLRACADGGANHLY 73 (263) T ss_dssp --------CCCSSC-----CCSCCCCEEECTTGGGSSSCCCCEEEEECSSCCCTT---HHHHHHHCSEEEEETTHHHHHH T ss_pred CCCCCCCCCCCCCC-----CCCCCHHHHCCCHHCCCCCCCCCEEEEEECCCCHHH---HHHHHHHCCEEEEEECHHHHHH T ss_conf 86554433355756-----477426552780111788887656999978981799---9999965889999828899998 Q ss_pred HH-----HCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHH Q ss_conf 98-----3014343333100001356889987530245543035411343232333310253212013345765200356 Q gi|254780653|r 229 VA-----QGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVE 303 (400) Q Consensus 229 ~A-----~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~Ti~ 303 (400) .. .|+.- .++=-|+...-.+..+.++.++..++.|-|= +-. | ..+.++ T Consensus 74 ~~~~~~~~gi~P--d~iiGDfDSi~~~~~~~~~~~~~~~~~~p~k------------------D~T------D-~e~Al~ 126 (263) T 1ig3_A 74 DLTEGERESFLP--EFVSGDFDSIRPEVKEYYTKKGCDLISTPDQ------------------DHT------D-FTKCLQ 126 (263) T ss_dssp HTCTTCGGGCCC--SEEEECTTSSCHHHHHHHHHTTCEEEECCCT------------------TSC------H-HHHHHH T ss_pred HHHCCCCCCCCC--CEEECCCCCCCHHHHHHHHHCCCEEEECCCC------------------CCC------H-HHHHHH T ss_conf 740121238888--9898747899979999987569738889766------------------768------7-999999 Q ss_pred HHHH----HHCCCCEEEEECCCCC Q ss_conf 7776----4057767999766253 Q gi|254780653|r 304 YIKQ----VIAQARTVMWNGPLGV 323 (400) Q Consensus 304 ~~~~----~I~~AktI~WNGP~Gv 323 (400) ...+ .=.++..|+.-|-+|- T Consensus 127 ~~~~~~~~~~~~~~~i~i~Ga~Gg 150 (263) T 1ig3_A 127 VLQRKIEEKELQVDVIVTLGGLGG 150 (263) T ss_dssp HHHHHHHHTTCCCSEEEEECCSSS T ss_pred HHHHHHHHHCCCCCEEEEEECCCC T ss_conf 998742321269876999955889 No 28 >>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} (A:1-198,A:241-325) Probab=60.32 E-value=6.5 Score=19.42 Aligned_cols=91 Identities=12% Similarity=0.207 Sum_probs=54.1 Q ss_pred HHHCCCCC-EEEECCHHHHCCCCCCEEECCCCCCC---CCCHHH----HHHHHHHHH----------------------- Q ss_conf 53124364-24754404401137633302332100---033255----657776533----------------------- Q gi|254780653|r 134 RMLSRNGD-FYINDAFSVSHRAHASITGLSHLLPS---YIGRAM----QKELSMLES----------------------- 182 (400) Q Consensus 134 k~La~laD-iyVnDAF~~aHR~haS~~gi~~~lps---~aG~l~----ekEi~~L~~----------------------- 182 (400) .+..+-.| +||-|+|..+++.|.--+-+-.-.+. ++=.++ .+|++.... T Consensus 81 ~~yl~~~d~lyV~D~~vGaD~~~rlkvRvite~Aw~aLF~~nlfirP~~eel~~f~ePdftI~~aP~~~adp~~~Gl~Se 160 (283) T 1ii2_A 81 KEFLDTREHLFVVDCFAGHDERYRLKVRVFTTRPYHALFMRDMLIVPTPEELATFGEPDYVIYNAGECKADPSIPGLTST 160 (283) T ss_dssp HHHHHTSSEEEEEEEEECSSTTTCEEEEEEESSHHHHHHHHHHSBCCCHHHHHTCCSCSEEEEEETTSCCCTTSTTCCSS T ss_pred HHHHHCCCCEEEEEEEEECCHHHCEEEEEEECHHHHHHHHHHHCCCCCHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCC T ss_conf 99984178689998776468312301799971454889987334899857852357987699537663451000578887 Q ss_pred --HCCCCCCCEEEEEEECCHHH-----HHHHHHHHHH-CCCEEEECHHHHH Q ss_conf --10166787189996078025-----5788998773-0688886205789 Q gi|254780653|r 183 --CFSESKKPLVAIVGGSKVST-----KITLLINLVK-KVDKLVIGGGMAN 225 (400) Q Consensus 183 --~l~~~~~P~v~IiGGaKisd-----Ki~~i~~L~~-k~D~iiigG~lan 225 (400) ++-+.++ .+++|||.-..- -+.++..|+. +.+++.-.|++.| T Consensus 161 ~fiiin~~~-~~~lI~Gt~YaGEiKKgiFTvmNylLP~r~e~~~~d~~v~~ 210 (283) T 1ii2_A 161 TCVALNFKT-REQVILGTEYAGEMKKGILTVMFELMPQMDEHVWTDRGVFN 210 (283) T ss_dssp CEEEEETTT-TEEEEESCCCTHHHHHHHHHHHHHHHHHTSCEEECSSCEEE T ss_pred CEEEEECCC-CEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCEEE T ss_conf 379998025-98999675467788999999974441435661365886685 No 29 >>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} (B:) Probab=57.38 E-value=8.7 Score=18.62 Aligned_cols=103 Identities=10% Similarity=0.096 Sum_probs=62.3 Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHC-CCEE-EECHHHHHHHHHHHCCCCCCCCCCCCCCHHHH Q ss_conf 556577765331016678718999607802557889987730-6888-86205789999983014343333100001356 Q gi|254780653|r 172 AMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKK-VDKL-VIGGGMANSFLVAQGMGVGRSLCQRDFSDNVH 249 (400) Q Consensus 172 l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k-~D~i-iigG~lantfL~A~G~~IG~Sl~e~~~~~~ak 249 (400) -.++|++.+..+++.-+.|+. +++++--+.+-.+++..++. +|.+ +|.|. ..+..+ T Consensus 106 ~~~~~~~~i~~v~~~i~~~~~-~~~~siDt~~~ev~~~aL~~g~d~~~~Ins~---------------------~~~~~~ 163 (310) T 2h9a_B 106 SGAELAEVCKAVADAIDVPLM-IIGCGVEEKDAEIFPVIGEALSGRNCLLSSA---------------------TKDNYK 163 (310) T ss_dssp CHHHHHHHHHHHHHHCSSCEE-EECCSCHHHHHHHHHHHHHHTTTSCCEEEEE---------------------CTTTHH T ss_pred CHHHHHHHHHHHHHHCCCCEE-EECCCCCCHHHHHHHHHHHHHCHHCCCCCCC---------------------CCCCHH T ss_conf 999999999999986589836-7326644110999999999734004660013---------------------522458 Q ss_pred HHHHHHHHCCCCCCC-EEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCH Q ss_conf 889987530245543-035411343232333310253212013345765200 Q gi|254780653|r 250 QIAWEAKRSACEIIV-PRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFK 300 (400) Q Consensus 250 ~i~~~a~~~~~~I~l-P~D~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~ 300 (400) .+.+.++++++..++ ..|-.-. ............++.++.++|.|.. T Consensus 164 ~~~~la~~~~~~vVv~~~~~~~~----~~~~~~~~~~~~i~~~~ivlDpg~~ 211 (310) T 2h9a_B 164 PIVATCMVHGHSVVASAPLDINL----SKQLNIMIMEMNLAPNRIIMDPLIG 211 (310) T ss_dssp HHHHHHHHHTCEEEEECSSCHHH----HHHHHHHHHTTTCCGGGEEEECCCC T ss_pred HHHHHHHHHCCCEEEECCCHHHH----HHHHHHHHHHCCCCHHHEEEECCCC T ss_conf 99999998199899988646889----9999999998699977889815765 No 30 >>2yzs_A Putative uncharacterized protein; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; 2.00A {Aquifex aeolicus} (A:1-79) Probab=53.17 E-value=1.4 Score=23.80 Aligned_cols=60 Identities=10% Similarity=0.005 Sum_probs=40.1 Q ss_pred CCCEEEEEEE---CCCCCCC-CEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC Q ss_conf 9968999820---1671318-5777258999988989999988980999913778889847332 Q gi|254780653|r 14 RGLRCLLRVD---WNVPFID-GKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDC 73 (400) Q Consensus 14 ~gk~VlvRvD---~NvPi~~-g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~ 73 (400) ++.++.++-+ .-+|+.+ ..|.=..++.-+-+-+..|+++|..++.+|+-|||.|...+.. T Consensus 15 ~~~~l~v~~~~~~~~iPl~~i~~Ivi~g~v~ist~~l~~l~~~gI~v~f~s~~G~~~G~l~p~~ 78 (79) T 2yzs_A 15 HENTLRFENAEVKKDIPVEDVEEIFVFAELSLNTKLLNFLASKGIPLHFFNYYGYYTGTFYPRE 78 (79) T ss_dssp ETTEEEEECSSCEEEECGGGCSEEEECSCEEEEHHHHHHHHHHTCCEEEECTTSCEEEEEEECC T ss_pred ECCEEEEEECCEEEEECHHHCCEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEECCCC T ss_conf 7899999978989997358868899958970679999999987997999999997858845865 No 31 >>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} (B:1-125) Probab=50.01 E-value=16 Score=16.85 Aligned_cols=49 Identities=8% Similarity=0.120 Sum_probs=29.9 Q ss_pred CCCCCHH-------HHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCC Q ss_conf 7652003-------5677764057767999766253227436588999999998611148 Q gi|254780653|r 295 LDVGFKT-------VEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKER 347 (400) Q Consensus 295 ~DIGp~T-------i~~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~~~ 347 (400) +--|.+. +........+++.+++--|...-.. .+...+.+++.+..+.. T Consensus 58 LSGGek~~~~la~rlala~~l~~~~~~lilDEPT~~LD~----~~~~~l~~~l~~~~~~~ 113 (125) T 1f2t_B 58 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDE----ERRRKLITIMERYLKKI 113 (125) T ss_dssp SCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCH----HHHHHHHHHHHHTGGGS T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCH----HHHHHHHHHHHHHHHCC T ss_conf 878887247888999999997069998997188665899----99999999999999669 No 32 >>1ii8_B RAD50 ABC-ATPase; MRE11, DNA double-strand break repair, replication; 3.02A {Pyrococcus furiosus} (B:1-151) Probab=46.89 E-value=18 Score=16.60 Aligned_cols=41 Identities=5% Similarity=0.098 Sum_probs=27.2 Q ss_pred HHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCE Q ss_conf 764057767999766253227436588999999998611148858 Q gi|254780653|r 306 KQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRII 350 (400) Q Consensus 306 ~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~~~~~~ 350 (400) .-...++..+|+--|....-. .....+++.+.+..+....+ T Consensus 102 ~~l~~~~~~liLDEPt~~LD~----~~~~~l~~~l~~l~~~~~~v 142 (151) T 1ii8_B 102 LYLAGEISLLILDEPTPYLDE----ERRRKLITIMERYLKKIPQV 142 (151) T ss_dssp HHHHSSCSEEEEECCSSSSCS----HHHHHHHHHHHHTGGGSSEE T ss_pred HHHCCCCCEEEECCCCCCCCH----HHHHHHHHHHHHHHHCCCEE T ss_conf 985669988996487566898----99999999999999669989 No 33 >>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} (A:249-271,A:543-734) Probab=44.90 E-value=9.6 Score=18.35 Aligned_cols=23 Identities=9% Similarity=0.174 Sum_probs=9.1 Q ss_pred HHHHHHHHHHHCCCCCCCEEEEE Q ss_conf 56577765331016678718999 Q gi|254780653|r 173 MQKELSMLESCFSESKKPLVAIV 195 (400) Q Consensus 173 ~ekEi~~L~~~l~~~~~P~v~Ii 195 (400) +..|+..+..++.......++++ T Consensus 120 F~~El~~i~~il~~~~~~sLvli 142 (215) T 1ewq_A 120 FXVEXEEVALILKEATENSLVLL 142 (215) T ss_dssp HHHHHHHHHHHHHHCCTTEEEEE T ss_pred HHHHHHHHHHHHHHCCCCCEEEE T ss_conf 99999999999985899818999 No 34 >>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 2q6u_A* (A:1-41,A:153-211,A:330-397) Probab=44.36 E-value=21 Score=16.10 Aligned_cols=95 Identities=15% Similarity=0.114 Sum_probs=58.3 Q ss_pred HHHCCCEEEECHHHHHHHHHHHCCCCC--CCCCCCC-CC---HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCC Q ss_conf 773068888620578999998301434--3333100-00---13568899875302455430354113432323333102 Q gi|254780653|r 210 LVKKVDKLVIGGGMANSFLVAQGMGVG--RSLCQRD-FS---DNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVV 283 (400) Q Consensus 210 L~~k~D~iiigG~lantfL~A~G~~IG--~Sl~e~~-~~---~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~~~~ 283 (400) |.++.|-++||||.+-.-+...--+.| -.++|.. .. +.+..+.+.+++.|.+|..-.-+.--. .+.+.-.... T Consensus 1 m~~~~~~~vig~g~~g~~~a~~~~~~g~~v~~~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~-~~~~~~~v~t 79 (168) T 2oln_A 1 MTESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNERGTLAALFTLAQAAGATLRAGETVTELV-PDADGVSVTT 79 (168) T ss_dssp --CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTCSHHHHHHHHHHHHHTTCEEEESCCEEEEE-EETTEEEEEE T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCCEEEEEECCCCC-CCCCCCEECC T ss_conf 998787899896899999999999889968999089988764332210011013432124443012320-0378630004 Q ss_pred CCCEECCCCCCCCCCCHHHHHH Q ss_conf 5321201334576520035677 Q gi|254780653|r 284 SAQSVPLDSIILDVGFKTVEYI 305 (400) Q Consensus 284 ~~~~i~~~~~i~DIGp~Ti~~~ 305 (400) +-..++.+..++=.|..+-... T Consensus 80 ~~g~i~a~~vV~aaG~~~~~l~ 101 (168) T 2oln_A 80 DRGTYRAGKVVLACGPYTNDLE 101 (168) T ss_dssp SSCEEEEEEEEECCGGGHHHHT T ss_pred CCCEEECCEEEEECCCCHHHHC T ss_conf 5873603769996782678779 No 35 >>1aoe_A DHFR, dihydrofolate reductase; oxidoreductase, antifungal target; HET: NDP GW3; 1.60A {Candida albicans} (A:) Probab=43.74 E-value=4.8 Score=20.29 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=11.7 Q ss_pred EEEEEEECCHHHHHHHHHHHHHC--CCEEEE Q ss_conf 18999607802557889987730--688886 Q gi|254780653|r 191 LVAIVGGSKVSTKITLLINLVKK--VDKLVI 219 (400) Q Consensus 191 ~v~IiGGaKisdKi~~i~~L~~k--~D~iii 219 (400) -+.|+||+.+ ...+++. +|.+.+ T Consensus 108 ~i~viGG~~i------~~~~l~~~LvDei~l 132 (192) T 1aoe_A 108 RVFIIGGAEI------YNELINNSLVSHLLI 132 (192) T ss_dssp EEEECCCHHH------HHHHTTSTTEEEEEE T ss_pred EEEEECCHHH------HHHHHHCCCCCEEEE T ss_conf 3899564589------999742304899999 No 36 >>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A (A:1-94,A:179-249) Probab=42.84 E-value=8.5 Score=18.69 Aligned_cols=47 Identities=17% Similarity=0.104 Sum_probs=35.2 Q ss_pred CCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 1857772589999889899999889809999137788898473322478888764 Q gi|254780653|r 29 IDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIAE 83 (400) Q Consensus 29 ~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l~ 83 (400) .||+++++.--.....+|+.|.++|.++++.| ||| ..++.+..+.+. T Consensus 9 lDGTLl~~~i~~~~~~al~~l~~~G~~~~iaT--GR~------~~~~~~~~~~l~ 55 (165) T 2zos_A 9 IDKTLIPGYEPDPAKPIIEELKDXGFEIIFNS--SKT------RAEQEYYRKELE 55 (165) T ss_dssp CSTTTCTTSCSGGGHHHHHHHHHTTEEEEEBC--SSC------HHHHHHHHHHHT T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEC--CCC------HHHHHHHHHHHC T ss_conf 78767799988899999999998899999991--898------899999999734 No 37 >>2w9h_A DHFR, dihydrofolate reductase; NADP, trimethoprim, oxidoreductase, one-carbon metabolism; HET: TOP; 1.48A {Staphylococcus aureus} PDB: 2w9g_A* 3fyw_X* 3fyv_X* 3fy8_X* 3fy9_X* 3fq0_A* 3f0b_X* 3fqc_A* 3fqz_A* 3f0u_X* 3fqf_A* 3fqo_A* 3fqv_A* 2w9s_A* 2w9t_A (A:) Probab=41.88 E-value=22 Score=16.07 Aligned_cols=34 Identities=29% Similarity=0.497 Sum_probs=24.4 Q ss_pred HHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECH Q ss_conf 533101667871899960780255788998773068888620 Q gi|254780653|r 180 LESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGG 221 (400) Q Consensus 180 L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG 221 (400) +..+++..+. +.|+||++ +.+.+++.+|.+++.= T Consensus 80 ~~~~l~~~~~--i~viGG~~------i~~~~l~~~d~l~it~ 113 (159) T 2w9h_A 80 IEDIYQLPGH--VFIFGGQT------LFEEMIDKVDDMYITV 113 (159) T ss_dssp GGGGGGSCSC--EEEEECHH------HHHHHTTTCSEEEEEE T ss_pred HHHHHHCCCC--EEEECCHH------HHHHHHHHCCEEEEEE T ss_conf 9998620222--04674478------9998775437899998 No 38 >>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus HB8} (A:1-209,A:253-338) Probab=40.24 E-value=10 Score=18.16 Aligned_cols=93 Identities=15% Similarity=0.160 Sum_probs=54.4 Q ss_pred HHHHHCCCCCEEEECCHHHHCCCCCCEEECCCCCCC---CCCHHH--------HHHHHHHH------------------- Q ss_conf 665312436424754404401137633302332100---033255--------65777653------------------- Q gi|254780653|r 132 FVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLPS---YIGRAM--------QKELSMLE------------------- 181 (400) Q Consensus 132 f~k~La~laDiyVnDAF~~aHR~haS~~gi~~~lps---~aG~l~--------ekEi~~L~------------------- 181 (400) -+....+--|+||.|+|..+|+++.--+-+..-.+. ++=.++ ++|+.... T Consensus 89 ~~~~~l~~kdlyv~D~~vGaDp~~rl~vRvItE~Aw~~LF~~nLfirP~~~~~~eel~~~~PdftIi~~P~~~adp~~dG 168 (295) T 1j3b_A 89 RVVQYLSERDLYVQDLYAGADRRYRLAVRVVTESPWHALFARNMFILPRRFGNDDEVEAFVPGFTVVHAPYFQAVPERDG 168 (295) T ss_dssp HHHHHHHTSCEEEEEEEECSSTTTCEEEEEEESCHHHHHHHHHHSBCGGGGC------CCCCSEEEEEETTCCCCHHHHC T ss_pred HHHHHHHCCCEEEEEEEEECCHHHCEEEEEEEHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCEEEEECCCCCCCCCCCC T ss_conf 99999836976998657861730121289973267799999851678754553234532488718985566757845457 Q ss_pred -----HHCCCCCCCEEEEEEECCHHH-----HHHHHHHHHHCCCEEEECHHHHH Q ss_conf -----310166787189996078025-----57889987730688886205789 Q gi|254780653|r 182 -----SCFSESKKPLVAIVGGSKVST-----KITLLINLVKKVDKLVIGGGMAN 225 (400) Q Consensus 182 -----~~l~~~~~P~v~IiGGaKisd-----Ki~~i~~L~~k~D~iiigG~lan 225 (400) -++-++++ .+++|||.-..- -+.++..|+.+-.+++-.|++.| T Consensus 169 l~Setfiiin~~~-k~~lI~GT~YaGEiKKsiFTvmnyllPr~e~~~~~~~v~~ 221 (295) T 1j3b_A 169 TRSEVFVGISFQR-RLVLIVGTKYAGEIKKSIFTVMNYLMPKDEHGWSEDGVFN 221 (295) T ss_dssp CSSSCEEEEETTT-TEEEEESCCCTHHHHHHHHHHHHHHGGGSEEEECSSCEEE T ss_pred CCCCCEEEECHHC-CEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE T ss_conf 6664179971201-8799956378999889999999866665522626786798 No 39 >>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans} (A:) Probab=40.23 E-value=8.4 Score=18.72 Aligned_cols=57 Identities=23% Similarity=0.372 Sum_probs=35.7 Q ss_pred EECCHHHHCCCCCCCHHHHHHHHCCC--CCE-EEECCHHH-HCCCCCCE----EECCCCC-CCCCC Q ss_conf 98242430343210002466531243--642-47544044-01137633----3023321-00033 Q gi|254780653|r 114 ILAENVRFYSEEERNDPDFVRMLSRN--GDF-YINDAFSV-SHRAHASI----TGLSHLL-PSYIG 170 (400) Q Consensus 114 lLLEN~Rf~~~E~~n~~~f~k~La~l--aDi-yVnDAF~~-aHR~haS~----~gi~~~l-ps~aG 170 (400) .++++.|+..++....++|+....+. +.+ ...+.||| |.|.||=. .|+.-++ +||+- T Consensus 58 ~~f~~~r~~~~~~~~~~d~~~~~~~~~~~~IlVaG~nfG~GSSREhAa~al~~~Gi~aVIA~SFa~ 123 (213) T 2hcu_A 58 YLMYEWRYLDNNYTENPDFIFNQPEYREASILITGDNFGAGSSREHAAWALADYGFKVIVAGSFGD 123 (213) T ss_dssp GTTHHHHBSSTTCCBCTTSGGGSGGGTTCCEEEECSSBTCSSCCHHHHHHHHHHTCCEEEESCBCH T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEECHHH T ss_conf 301110021001345751000363356774897156100464257786768758604898600778 No 40 >>1zdr_A Dihydrofolate reductase; DHFR, NADP, oxidoreductase; 2.00A {Geobacillus stearothermophilus} (A:) Probab=39.89 E-value=24 Score=15.73 Aligned_cols=44 Identities=20% Similarity=0.349 Sum_probs=25.3 Q ss_pred CHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEEC Q ss_conf 325565777653310166787189996078025578899877306888862 Q gi|254780653|r 170 GRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIG 220 (400) Q Consensus 170 G~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiig 220 (400) +..+...++..-+....+.+ -+.|+||+++ .+.+++.+|.+++. T Consensus 72 ~~~~~~~~~~~~~~~~~~~~-~i~viGG~~i------~~~~l~~~d~~~lt 115 (164) T 1zdr_A 72 GCLVLHSLEEVKQWIASRAD-EVFIIGGAEL------FRATMPIVDRLYVT 115 (164) T ss_dssp TCEEECSHHHHHHHHHTCCS-CEEEEECHHH------HHHHGGGCCEEEEE T ss_pred CCEEECCHHHHHHHHHCCCC-EEEEECHHHH------HHHHHHHHHEEEEE T ss_conf 54023158899998615684-2999510999------99999872377988 No 41 >>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae TIGR4} (A:1-16,A:83-190) Probab=39.51 E-value=25 Score=15.62 Aligned_cols=78 Identities=8% Similarity=0.036 Sum_probs=37.6 Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCH Q ss_conf 99988989999988980999913778889847332247888876431013354566631025566553136464898242 Q gi|254780653|r 39 IERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAEN 118 (400) Q Consensus 39 I~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN 118 (400) ...+.++|+.|-++|-++.++|...++-.+.-..+. +.+++.......-.....--....+.+++.+.+.++++.++ T Consensus 18 ~pgv~e~L~~Lk~~g~~~~i~Sn~~~~~~~~l~~~~---l~~~fd~i~~~~~~~~~Kp~~~~~~~a~~~l~~~~~l~VgD 94 (124) T 2fi1_A 18 FEGVSDLLEDISNQGGRHFLVSHRNDQVLEILEKTS---IAAYFTEVVTSSSGFKRKPNPESMLYLREKYQISSGLVIGD 94 (124) T ss_dssp CTTHHHHHHHHHHTTCEEEEECSSCTHHHHHHHHTT---CGGGEEEEECGGGCCCCTTSCHHHHHHHHHTTCSSEEEEES T ss_pred CCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECC T ss_conf 620699986400120121202322222222223333---22222222222223445632999999999759997699907 Q ss_pred H Q ss_conf 4 Q gi|254780653|r 119 V 119 (400) Q Consensus 119 ~ 119 (400) . T Consensus 95 ~ 95 (124) T 2fi1_A 95 R 95 (124) T ss_dssp S T ss_pred C T ss_conf 9 No 42 >>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein structure initiative; 1.90A {Pseudoalteromonas atlantica T6C} (A:261-451) Probab=38.82 E-value=26 Score=15.55 Aligned_cols=165 Identities=12% Similarity=0.081 Sum_probs=82.2 Q ss_pred CHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCC-CCCC---EEEEEEECCHHHHHHHHHHHHHCCCEEEECHH Q ss_conf 4044011376333023321000332556577765331016-6787---18999607802557889987730688886205 Q gi|254780653|r 147 AFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLESCFSE-SKKP---LVAIVGGSKVSTKITLLINLVKKVDKLVIGGG 222 (400) Q Consensus 147 AF~~aHR~haS~~gi~~~lps~aG~l~ekEi~~L~~~l~~-~~~P---~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~ 222 (400) +|..+-....|.--+ -.-++.+-..+++-+..+.+.... +..+ +..+++......-...++....+-..++.||. T Consensus 23 ~~~~~Gq~C~a~~~i-~v~~~i~d~~~~~l~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~ga~~~~g~~ 101 (191) T 3k2w_A 23 RFANCGQVCTCVERL-YVHASVYDEFMAKFLPLVKGLKVGDPMDADSQMGPKCNQREIDNIDHIVHEAIKQGATVATGGK 101 (191) T ss_dssp HHGGGGCSTTSEEEE-EEETTTHHHHHHHHHHHHHTCCBSCTTSTTCSBCCCSCHHHHHHHHHHHHHHHHHHCEEEECCC T ss_pred HHHCCCCHHHCCCEE-EEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCC T ss_conf 986149851347789-9976689999998999997154366667554315313899999999997654327988996786 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHH Q ss_conf 78999998301434333310000135688998753024554303541134323233331025321201334576520035 Q gi|254780653|r 223 MANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTV 302 (400) Q Consensus 223 lantfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~Ti 302 (400) ....-....|+-+.-.+++....+ ..+.+ .+++-|+-.++..+... .-..+.........-.++-==...+ T Consensus 102 ~~~~~~~~~~~~~~ptii~~~~~~--~~~~~------~E~fgPvl~i~~~~~~e-eai~~~n~~~~glsa~i~s~d~~~~ 172 (191) T 3k2w_A 102 TATVEGFEGGCWYEPTVLVDVKQD--NIVVH------EETFGPILPIVKVSSME-QAIEFCNDSIYGLSAYVHTQSFANI 172 (191) T ss_dssp ---------CCCCCCEEEESCCTT--SHHHH------SCCCSSEEEEEEESCHH-HHHHHHTCSSEESEEEEECSBHHHH T ss_pred CCCCCCCCCCCEECCEEEECCCCC--CCCCC------CCCCCCEEEEEEECCHH-HHHHHHHCCCCCCEEEEEECCHHHH T ss_conf 577655678836747799704776--65345------43637569999969999-9999986799998699990899999 Q ss_pred HHHHHHHCCCCEEEEECCCC Q ss_conf 67776405776799976625 Q gi|254780653|r 303 EYIKQVIAQARTVMWNGPLG 322 (400) Q Consensus 303 ~~~~~~I~~AktI~WNGP~G 322 (400) +.+.+.+. +..|.||.|+| T Consensus 173 ~~~~~~~~-~G~v~vN~~ig 191 (191) T 3k2w_A 173 NQAISDLE-VGEVYINRGMG 191 (191) T ss_dssp HHHHHHCC-SSEEEESCCSC T ss_pred HHHHHHCC-EEEEEEECCCC T ss_conf 99998698-88999959988 No 43 >>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus} (A:1-18,A:54-99) Probab=38.48 E-value=15 Score=17.01 Aligned_cols=28 Identities=14% Similarity=0.362 Sum_probs=23.2 Q ss_pred EECCCCCCCCCCHHHHHHHHHHHHHCCC Q ss_conf 3023321000332556577765331016 Q gi|254780653|r 159 TGLSHLLPSYIGRAMQKELSMLESCFSE 186 (400) Q Consensus 159 ~gi~~~lps~aG~l~ekEi~~L~~~l~~ 186 (400) -|++..+|+|.|.|=+.|+.+|-.-+.+ T Consensus 35 ~Gy~pvMP~y~g~Lsd~Ei~aLIaYIKS 62 (64) T 1w2l_A 35 QGYPNVMPASYASLSEREVAALIEFIKQ 62 (64) T ss_dssp TTSCSCCCGGGGGCCHHHHHHHHHHHHT T ss_pred CCCCCCCCHHCCCCCHHHHHHHHHHHHH T ss_conf 2356642010258999999999999997 No 44 >>3dau_A Dihydrofolate reductase; oxidoreductase, pseudo-rossmann fold, adenine nucleotide binding domain, antibiotic resistance; HET: MTX NAP; 1.50A {Escherichia coli K12} PDB: 1ddr_A* 1dds_A* 1ra9_A* 1dre_A* 1drh_A* 1dyi_A* 1dyh_A* 1jol_A* 1jom_A* 1ra1_A* 1dyj_A* 1ra3_A* 1ra8_A* 1ra2_A* 1rb2_A* 1rb3_A* 1rc4_A* 1rd7_A* 1re7_A* 1rf7_A* ... (A:) Probab=37.95 E-value=22 Score=15.96 Aligned_cols=39 Identities=15% Similarity=0.388 Sum_probs=24.7 Q ss_pred HHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEEC Q ss_conf 565777653310166787189996078025578899877306888862 Q gi|254780653|r 173 MQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIG 220 (400) Q Consensus 173 ~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiig 220 (400) +..+-+++.++- ..+ -+.|+||+. +.+.+++.+|.+++. T Consensus 75 ~~s~~~~l~~~~-~~~--~i~iiGG~~------i~~~~l~~~del~it 113 (159) T 3dau_A 75 VKSVDEAIAACG-DVP--EIMVIGGGR------VYEQFLPKAQKLYLT 113 (159) T ss_dssp ESSHHHHHHTTC-SCS--CEEECCCHH------HHHHHGGGCSEEEEE T ss_pred CCCHHHHHHHHH-CCC--CEEEECCHH------HHHHHHHHCCEEEEE T ss_conf 103889999861-687--349975768------999987550789999 No 45 >>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with cofactor and product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} (A:289-436) Probab=37.90 E-value=27 Score=15.46 Aligned_cols=126 Identities=17% Similarity=0.144 Sum_probs=65.7 Q ss_pred HHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCC Q ss_conf 00159968999820167131857772589999889899999889809999137788898473322478888764310133 Q gi|254780653|r 10 LRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIAESILHKN 89 (400) Q Consensus 10 ~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l~~~l~~~ 89 (400) +.+++|+||.| +-.-.+.| +||+|=-.+++-++.|.++|+.+.+--.+-.+..- . .....+.... ..... T Consensus 20 i~~~~~~~V~v---lGlafK~~--t~D~R~Spa~~l~~~L~~~G~~v~~~DP~v~~~~~-~-~~~~~~~~~~---~~~~~ 89 (148) T 1mv8_A 20 ITSHDTRKVGL---LGLSFKAG--TDDLRESPLVELAEMLIGKGYELRIFDRNVEYARV-H-GANKEYIESK---IPHVS 89 (148) T ss_dssp HTTSSCCEEEE---ECCSSSTT--CCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTT-S-SSCHHHHHHT---SHHHH T ss_pred HHHCCCCEEEE---ECCCCCCC--CCCCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHH-C-CHHHHHCCCC---CCCCC T ss_conf 86215878966---55755899--97554786999999999789989998999987774-0-1012320012---45445 Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCHHHHHH-HHCCCCCEEEECCHHHHCCCCCCEEECC Q ss_conf 545666310255665531364648982424303432100024665-3124364247544044011376333023 Q gi|254780653|r 90 ILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEERNDPDFVR-MLSRNGDFYINDAFSVSHRAHASITGLS 162 (400) Q Consensus 90 V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n~~~f~k-~La~laDiyVnDAF~~aHR~haS~~gi~ 162 (400) +..+++ ..++++ .-+.+++= .+.++|.. .+..+..-.|.|..++-.+....-.|+. T Consensus 90 ~~~~~~-----~~ea~~---~ad~vvi~---------t~h~ef~~l~~~~~~~~~v~D~r~i~~~~~~~~~g~~ 146 (148) T 1mv8_A 90 SLLVSD-----LDEVVA---SSDVLVLG---------NGDELFVDLVNKTPSGKKLVDLVGFMPHTTTAQAEGI 146 (148) T ss_dssp TTBCSC-----HHHHHH---HCSEEEEC---------SCCGGGHHHHHSCCTTCEEEESSSCCSSSCCSSEEES T ss_pred CEECCC-----HHHHHH---CCCEEEEC---------CCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCEE T ss_conf 301388-----999986---49999990---------6888999789875089999989998687788452826 No 46 >>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} (A:) Probab=36.95 E-value=28 Score=15.36 Aligned_cols=47 Identities=17% Similarity=0.262 Sum_probs=37.3 Q ss_pred CCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 159968999820167131857772589999889899999889809999137788 Q gi|254780653|r 12 DIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRP 65 (400) Q Consensus 12 d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRP 65 (400) -++||++.|.++=++ ++|+.++...+..|..|.+.|-++||. |=|+| T Consensus 18 ~~~~k~iVIKiGGsv------i~d~~~~~~l~~dia~L~~~G~~iViV-hG~~~ 64 (282) T 2bty_A 18 EFYGKTFVIKFGGSA------MKQENAKKAFIQDIILLKYTGIKPIIV-HGGGP 64 (282) T ss_dssp HHTTCEEEEEECSHH------HHSHHHHHHHHHHHHHHHHTTCEEEEE-ECCSH T ss_pred HHCCCEEEEEECHHH------HCCHHHHHHHHHHHHHHHHCCCEEEEE-ECCCC T ss_conf 858998999979067------268528999999999999889959999-79975 No 47 >>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3itk_A* (A:327-467) Probab=36.95 E-value=28 Score=15.36 Aligned_cols=42 Identities=14% Similarity=0.193 Sum_probs=32.3 Q ss_pred CCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEE Q ss_conf 59968999820167131857772589999889899999889809999 Q gi|254780653|r 13 IRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIF 59 (400) Q Consensus 13 ~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~ 59 (400) ++|+||.| +-+-.+.+ +||.|--.+++-++.|.+.|+.|.+- T Consensus 1 l~~~kIav---lGlafK~~--tdD~R~Spa~~i~~~L~~~Ga~V~~~ 42 (141) T 2q3e_A 1 VTDKKIAI---LGFAFKKD--TGDTRESSSIYISKYLMDEGAHLHIY 42 (141) T ss_dssp CTTCEEEE---ECCSSSTT--CCCCTTCHHHHHHHHHHHTTCEEEEE T ss_pred CCCCEEEE---EEEECCCC--CCCCCCCHHHHHHHHHHHCCCEEEEC T ss_conf 57988999---98640443--42234560355799897569889867 No 48 >>2w3w_A Dihydrofolate reductase; nonclassical antifolates, one-carbon metabolism, lipophilic antifolates, NADP, oxidoreductase; HET: VG9 NDP; 1.60A {Mycobacterium avium} PDB: 2w3v_A* (A:) Probab=36.37 E-value=20 Score=16.31 Aligned_cols=74 Identities=14% Similarity=0.082 Sum_probs=31.5 Q ss_pred CCCHHHHHHHHH---HCCCCEEEEECCCCCCCCCC-HHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCCCC Q ss_conf 520035677764---05776799976625322743-65889999999986111488589974804699899848876864 Q gi|254780653|r 297 VGFKTVEYIKQV---IAQARTVMWNGPLGVFEIEP-FDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAGISNEFT 372 (400) Q Consensus 297 IGp~Ti~~~~~~---I~~AktI~WNGP~GvfE~~~-F~~GT~~l~~~ia~~~~~~~~~sivGGGdT~aai~~~g~~~~~~ 372 (400) .|.+|.+.+.+. ..+-..+.....+..-.... +.....+. +..+..... .-|+|||.+...+-+.++.+.+. T Consensus 46 mGr~Tye~~~~~~~~l~~~~~iV~S~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-i~v~GG~~i~~~~l~~~lvdei~ 121 (167) T 2w3w_A 46 MGRRTWESLPAKVRPLPGRRNVVVSRRPDFVAEGARVAGSLEAA---LAYAGSDPA-PWVIGGAQIYLLALPHATRCEVT 121 (167) T ss_dssp EEHHHHHHSCGGGSSCTTSEEEEECSCTTCCCTTSEEESSHHHH---HHHTTTCSS-CEEEECHHHHHHHGGGCSEEEEE T ss_pred EECCHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEECCHHHHH---HHHHHCCCC-EEEEECHHHHHHHHCCCCEEEEE T ss_conf 80662342531450289981799843532012331000138999---998642650-69982078888651305789999 Q ss_pred EE Q ss_conf 68 Q gi|254780653|r 373 YV 374 (400) Q Consensus 373 hv 374 (400) .+ T Consensus 122 ~~ 123 (167) T 2w3w_A 122 EI 123 (167) T ss_dssp EE T ss_pred EE T ss_conf 99 No 49 >>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreductase, porphyrin biosynthesis; 2.30A {Bacillus megaterium} (A:1-126) Probab=36.00 E-value=25 Score=15.64 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=12.9 Q ss_pred CCCEEEEEEECCHHHHHHHHHHHHHC Q ss_conf 78718999607802557889987730 Q gi|254780653|r 188 KKPLVAIVGGSKVSTKITLLINLVKK 213 (400) Q Consensus 188 ~~P~v~IiGGaKisdKi~~i~~L~~k 213 (400) +...+.|+|+.++. ..+.+.|.+. T Consensus 30 ~~k~vlIiG~G~~G--~~~a~~L~~~ 53 (126) T 3dfz_A 30 KGRSVLVVGGGTIA--TRRIKGFLQE 53 (126) T ss_dssp TTCCEEEECCSHHH--HHHHHHHGGG T ss_pred CCCEEEEECCCHHH--HHHHHHHHHC T ss_conf 98859998998999--9999999638 No 50 >>2go7_A Hydrolase, haloacid dehalogenase-like family; NP_346487.1, structural genomics, PSI, protein structure initiative; 2.10A {Streptococcus pneumoniae TIGR4} (A:1-15,A:86-207) Probab=34.91 E-value=30 Score=15.16 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=22.0 Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 99889899999889809999137788 Q gi|254780653|r 40 ERVVPTILELVEKKAKVVIFSHLGRP 65 (400) Q Consensus 40 ~~~~pTI~~l~~~~akvii~SH~GRP 65 (400) ..+.+++++|-++|.+++++|+..++ T Consensus 18 pgv~~~L~~L~~~g~~i~i~Sn~~~~ 43 (137) T 2go7_A 18 PGAREVLAWADESGIQQFIYTHKGNN 43 (137) T ss_dssp TTHHHHHHHHHHTTCEEEEECSSCTH T ss_pred CHHHHHHHCCCCCCCCHHHHCCHHHH T ss_conf 25777653111222210332000577 No 51 >>2jfg_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; nucleotide-binding, peptidoglycan synthesis, MURD ligase, ATP-binding, cell division, UMA, ADP; HET: KCX UMA ADP; 1.52A {Escherichia coli} (A:301-445) Probab=34.80 E-value=30 Score=15.14 Aligned_cols=59 Identities=14% Similarity=0.013 Sum_probs=39.0 Q ss_pred HHHHHHHHCCCCCCCEEEEEEEC-CHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCC Q ss_conf 77765331016678718999607-8025578899877306888862057899999830143 Q gi|254780653|r 176 ELSMLESCFSESKKPLVAIVGGS-KVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGV 235 (400) Q Consensus 176 Ei~~L~~~l~~~~~P~v~IiGGa-KisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~I 235 (400) ++.++-..+..+.| .++|+||. ...+.-.++..+....|.+++.|.-+-.+..+.+.++ T Consensus 26 s~~a~l~~l~~~~r-~i~v~g~~~~~~~~~~~~~~~~~~~d~vi~~g~~~~~~~~~~~~~~ 85 (145) T 2jfg_A 26 STEAALNGLHVDGT-LHLLLGGDGKSADFSPLARYLNGDNVRLYCFGRDGAQLAALRPEVA 85 (145) T ss_dssp HHHHHHTTCCCSSC-EEEEEESBCTTCCCGGGGGGSCSSSEEEEEESTTHHHHHTTSGGGE T ss_pred HHHHHHHCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCC T ss_conf 88875410123233-3222235664014899999985138899998989899985377771 No 52 >>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} (A:) Probab=33.42 E-value=32 Score=15.00 Aligned_cols=202 Identities=16% Similarity=0.137 Sum_probs=87.7 Q ss_pred HHHHHHHCCCCCCCEEEEEEECCHHHH---HHH-------HHHHHHCCCEEE-ECHHHHHHHHHHHCCCCCCCCCCCCCC Q ss_conf 776533101667871899960780255---788-------998773068888-620578999998301434333310000 Q gi|254780653|r 177 LSMLESCFSESKKPLVAIVGGSKVSTK---ITL-------LINLVKKVDKLV-IGGGMANSFLVAQGMGVGRSLCQRDFS 245 (400) Q Consensus 177 i~~L~~~l~~~~~P~v~IiGGaKisdK---i~~-------i~~L~~k~D~ii-igG~lantfL~A~G~~IG~Sl~e~~~~ 245 (400) .+.++.+-.-..+..+.-+||+-+.++ ... +..+.+..+.++ .||+.......+.|...+.+....... T Consensus 8 ~~~~~~~~~~~~~~~viK~Ggs~i~~~~~~~~~l~~~~~~i~~~~~~~~~iiv~g~g~~~~~~~~~~~~~~~~~~~~~~~ 87 (244) T 2brx_A 8 HHSSGLVPRGSHMRIVFDIGGSVLVPENPDIDFIKEIAYQLTKVSEDHEVAVVVGGGKLARKYIEVAEKFNSSETFKDFI 87 (244) T ss_dssp -----------CCEEEEEECHHHHCSSSCCHHHHHHHHHHHHHHHHHSEEEEEECCHHHHHHHHHHHHTTTCCHHHHHHH T ss_pred CCCCCCCCCCCCCEEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 55778876776457999954554189999999999999999999859948999897633134788766531217889998 Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEC--CCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 13568899875302455430354113432323333102532120--1334576520035677764057767999766253 Q gi|254780653|r 246 DNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVP--LDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGV 323 (400) Q Consensus 246 ~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~~~~~~~~i~--~~~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~Gv 323 (400) ...-........ ....-+....+... .............+| .+..+..=+..+...+...+.--+-++|...-|+ T Consensus 88 ~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~l~~g~ipv~~g~~~~~~sD~~A~~lA~~l~A~~lii~tDV~GV 164 (244) T 2brx_A 88 GIQITRANAMLL--IAALREKAYPVVVE-DFWEAWKAVQLKKIPVMGGTHPGHTTDAVAALLAEFLKADLLVVITNVDGV 164 (244) T ss_dssp HHHHHHHHHHHH--HHHHGGGBCSSCBC-SHHHHHHHHHTTCBCEECCCSTTCCHHHHHHHHHHHTTCSEEEEECSSSSC T ss_pred HHHHHHHHHHHH--HHHHHHHHCCCCCC-CHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH T ss_conf 889999999999--99998612243234-689999986530134236889987602999999998280688876545442 Q ss_pred CCCCCHH--------HHHHHHHHHHHHHHCCCCCEEEECCC-----HHHHHHHHCCCCCCCCEEECC--HHHHHHHHCCC Q ss_conf 2274365--------88999999998611148858997480-----469989984887686468750--79989987489 Q gi|254780653|r 324 FEIEPFD--------RATVEVAHYVAKLTKERRIISIAGGG-----DTITALAHAGISNEFTYVSTA--GGAFLEWLEGK 388 (400) Q Consensus 324 fE~~~F~--------~GT~~l~~~ia~~~~~~~~~sivGGG-----dT~aai~~~g~~~~~~hvSTg--GGA~L~~L~G~ 388 (400) |..++-. .=|.+-+..++. .+. ..+.|| .++..+.+.|+. .||..+ -++..++|.|+ T Consensus 165 ~~~dp~~~~~a~~i~~ls~~e~~~l~~----~g~-~~~~ggm~~k~~a~~~a~~~gi~---v~I~~~~~p~~l~~~l~g~ 236 (244) T 2brx_A 165 YTADPKKDPTAKKIKKMKPEELLEIVG----KGI-EKAGSSSVIDPLAAKIIARSGIK---TIVIGKEDAKDLFRVIKGD 236 (244) T ss_dssp BSSCTTTCTTCCBCSEECHHHHHHHHH----C---------CCSCHHHHHHHHHHTCC---EEEECHHHHTCHHHHHTTC T ss_pred CCCCCCCCCCCCCCEEEECCHHHHHHH----CCC-CCCCCCCEECHHHHHHHHHCCCC---EEEEECCCCCHHHHHHCCC T ss_conf 136433477554544996055789850----777-65899981159999999987994---8997089973799997699 Q ss_pred C Q ss_conf 9 Q gi|254780653|r 389 D 389 (400) Q Consensus 389 ~ 389 (400) . T Consensus 237 ~ 237 (244) T 2brx_A 237 H 237 (244) T ss_dssp S T ss_pred C T ss_conf 9 No 53 >>2o8b_A DNA mismatch repair protein MSH2; DNA damage response, somatic hypermutation, protein-DNA complex, DNA mispair, cancer, ABC transporter ATPase; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 2o8e_A* (A:289-323,A:618-823) Probab=31.52 E-value=29 Score=15.24 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=10.3 Q ss_pred HHHHHHHHHHHCCCCCCCEEEEE Q ss_conf 56577765331016678718999 Q gi|254780653|r 173 MQKELSMLESCFSESKKPLVAIV 195 (400) Q Consensus 173 ~ekEi~~L~~~l~~~~~P~v~Ii 195 (400) +..|+..+..+++...+..++++ T Consensus 143 F~~El~~i~~il~~~t~~SLVLi 165 (241) T 2o8b_A 143 FMAEMLETASILRSATKDSLIII 165 (241) T ss_dssp HHHHHHHHHHHHTTCCTTSEEEE T ss_pred HHHHHHHHHHHHHHCCCCEEEEE T ss_conf 99999999999985899829998 No 54 >>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} (A:298-428) Probab=31.02 E-value=35 Score=14.75 Aligned_cols=47 Identities=11% Similarity=0.080 Sum_probs=31.1 Q ss_pred HHHHHHHHHCC-CCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECH Q ss_conf 57776533101-667871899960780255788998773068888620 Q gi|254780653|r 175 KELSMLESCFS-ESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGG 221 (400) Q Consensus 175 kEi~~L~~~l~-~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG 221 (400) ..++++-..+. .+.++.++|+|..+-.|.-.++..+.+..+.+++.. T Consensus 22 ~~i~~~~~~l~~~~~~~~~~v~~~~~dkd~~~~~~~l~~~~~~~~~~~ 69 (131) T 1jbw_A 22 DGINGLITALKQLFSQPITVIAGILADKDYAAMADRLTAAFSTVYLVP 69 (131) T ss_dssp HHHHHHHHHHHHHCSSCCEEEEECSSSTTHHHHHHHHHHHCSEEEECC T ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCEEEEEC T ss_conf 999999999998617882389974179799999999884489999999 No 55 >>3ia4_A Dihydrofolate reductase; NADPH, methotrexate, oxidoreductase; HET: NDP MTX; 1.70A {Moritella profunda} PDB: 3ia5_A (A:) Probab=30.55 E-value=30 Score=15.16 Aligned_cols=43 Identities=16% Similarity=0.279 Sum_probs=24.6 Q ss_pred CHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEEC Q ss_conf 325565777653310166787189996078025578899877306888862 Q gi|254780653|r 170 GRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIG 220 (400) Q Consensus 170 G~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiig 220 (400) |..+..++...-..++..+ -+.|+||+++ ...+++.+|.+.+. T Consensus 73 ~~~~~~~~~~~~~~~~~~~--~I~i~GG~~i------~~~~l~~~d~l~it 115 (162) T 3ia4_A 73 GVTVVATLEDAVVAAGDVE--ELMIIGGATI------YNQCLAAADRLYLT 115 (162) T ss_dssp TSEEESSHHHHHHHHTTCS--EEEECCCHHH------HHHHGGGCSEEEEE T ss_pred CEEEECCHHHHHHHHCCCC--CEEEECHHHH------HHHHHHHCCEEEEE T ss_conf 8089737899998726887--3799447999------99999779999998 No 56 >>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} (A:) Probab=30.27 E-value=36 Score=14.67 Aligned_cols=76 Identities=20% Similarity=0.105 Sum_probs=43.3 Q ss_pred CCCCCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHH Q ss_conf 98887710100159968999820167131857772589999889899999889809999137788898473322478888 Q gi|254780653|r 1 MSRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVS 80 (400) Q Consensus 1 M~~~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~ 80 (400) |++.++..-+ +|+||+||| .- -.+-|=+ -+-+.|.++|++|++.+ | + .-.++..++ T Consensus 8 ~~~~~~~~~~-~l~gKvvlV-------TG-----as~GIG~--aiA~~la~~Ga~V~i~~---r-----~-~~~l~~~~~ 63 (273) T 1ae1_A 8 MMNCNNEGRW-SLKGTTALV-------TG-----GSKGIGY--AIVEELAGLGARVYTCS---R-----N-EKELDECLE 63 (273) T ss_dssp --------CC-CCTTCEEEE-------ES-----CSSHHHH--HHHHHHHHTTCEEEEEE---S-----C-HHHHHHHHH T ss_pred CCCCCCCCCC-CCCCCEEEE-------EC-----CCCHHHH--HHHHHHHHCCCEEEEEE---C-----C-HHHHHHHHH T ss_conf 2467999966-699998999-------48-----8879999--99999998799999997---9-----9-899999999 Q ss_pred HHHHHCCCCCCCCCCCCHHH Q ss_conf 76431013354566631025 Q gi|254780653|r 81 IAESILHKNILFVNDCIGST 100 (400) Q Consensus 81 ~l~~~l~~~V~fi~d~~g~~ 100 (400) .+++.-+....+.-|...++ T Consensus 64 ~~~~~~~~~~~~~~d~~~~~ 83 (273) T 1ae1_A 64 IWREKGLNVEGSVCDLLSRT 83 (273) T ss_dssp HHHHTTCCEEEEECCTTCHH T ss_pred HHHHCCCCCEEEECCCCCHH T ss_conf 99842788335651569999 No 57 >>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, complete proteome, DNA binding, DNA repair; HET: DNA ADP; 2.10A {Escherichia coli} (A:568-768) Probab=29.84 E-value=36 Score=14.64 Aligned_cols=42 Identities=12% Similarity=0.210 Sum_probs=20.6 Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEEE----ECCHHHHHH----HHHHHHHC Q ss_conf 5565777653310166787189996----078025578----89987730 Q gi|254780653|r 172 AMQKELSMLESCFSESKKPLVAIVG----GSKVSTKIT----LLINLVKK 213 (400) Q Consensus 172 l~ekEi~~L~~~l~~~~~P~v~IiG----GaKisdKi~----~i~~L~~k 213 (400) .+..|+..+++++.+.....++++= |....|... +++.|+++ T Consensus 102 tF~~El~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~aile~l~~~ 151 (201) T 1wb9_A 102 TFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANK 151 (201) T ss_dssp -CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHC T ss_conf 69999999999998589980999805999988699999999999999863 No 58 >>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} (A:140-281) Probab=26.34 E-value=42 Score=14.23 Aligned_cols=119 Identities=12% Similarity=-0.036 Sum_probs=56.8 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 10003325565777653310166787189996078025578899877306888862057899999830143433331000 Q gi|254780653|r 165 LPSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDF 244 (400) Q Consensus 165 lps~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~Sl~e~~~ 244 (400) .|...|.-.-.-...+...-..+++ ++|+||.-+ -+.+...|....-++-+-- ++..+..+ .. T Consensus 6 ~p~ipG~~~~~~~~~~~~~~~~~k~--v~ViGgG~i--g~E~A~~l~~~g~~Vtli~---------~~~~i~~~----~~ 68 (142) T 1ges_A 6 HPDIPGVEYGIDSDGFFALPALPER--VAVVGAGYI--GVELGGVINGLGAKTHLFE---------MFDAPLPS----FD 68 (142) T ss_dssp CCCSTTGGGSBCHHHHHHCSSCCSE--EEEECCSHH--HHHHHHHHHHTTCEEEEEC---------SSSSSSTT----SC T ss_pred CCCCCCCCEEECCHHHHHHHHCCCE--EEEECCCHH--HHHHHHHHHHCCCEEEEEE---------ECCCCCCC----CC T ss_conf 7889997344113033346528961--999888416--9999999997598799852---------01356777----65 Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCC-CCCCCCCEECCCCCCCCCCCH Q ss_conf 01356889987530245543035411343232333-310253212013345765200 Q gi|254780653|r 245 SDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIP-TQVVSAQSVPLDSIILDVGFK 300 (400) Q Consensus 245 ~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~-~~~~~~~~i~~~~~i~DIGp~ 300 (400) .+....+.+..++++..+++.....-......... ....+-+.++-+..++-+|-. T Consensus 69 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~ 125 (142) T 1ges_A 69 PMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGRE 125 (142) T ss_dssp HHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEE T ss_pred HHHHHHHHHHHHHCCEEEECCEEEEEEEECCCCEEEEEECCCCEEEEEEEEEECCCC T ss_conf 666567776654325342015058999975894377770799657667999924751 No 59 >>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A (A:14-201,A:277-337) Probab=25.75 E-value=16 Score=16.87 Aligned_cols=73 Identities=7% Similarity=0.004 Sum_probs=38.5 Q ss_pred HHHHHHCCCCCEEEECCHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHH-HHCCCCCCCEEEEEEECCHHHHH Q ss_conf 466531243642475440440113763330233210003325565777653-31016678718999607802557 Q gi|254780653|r 131 DFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLE-SCFSESKKPLVAIVGGSKVSTKI 204 (400) Q Consensus 131 ~f~k~La~laDiyVnDAF~~aHR~haS~~gi~~~lps~aG~l~ekEi~~L~-~~l~~~~~P~v~IiGGaKisdKi 204 (400) +-+....+--|+||.|+|..+|..|.--+-+-.-.+- .-+-|..-+---+ .-+.+..-.++.+=-+....+++ T Consensus 87 ~~~~~yL~~kdlyV~D~~aGaDp~~rl~VRvIte~Aw-haLF~~nMfiRPt~eel~~f~pdfvI~n~~~f~a~~~ 160 (249) T 1ytm_A 87 ALAGKELSNKPLYVVDLFCGANENTRLKIRFVMEVAW-QAHFVTNMFIRPTEEELKGFEPDFVVLNASKAKVENF 160 (249) T ss_dssp HHHHHHHSSSEEEEEEEEESSCTTTCEEEEEEESCHH-HHHHHHHHSBCCCHHHHTTCCCSEEEEEETTCCCTTT T ss_pred HHHHHHHCCCCEEEEEEEECCCCCCCEEEEEEEEHHH-HHHHHHHHCCCCCHHHHHCCCCCEEEEECCCCCCCCC T ss_conf 9999985379879986477178453333799860103-8899987356873455402356258983575567983 No 60 >>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* (B:1-60,B:173-240,B:335-405) Probab=25.17 E-value=44 Score=14.09 Aligned_cols=80 Identities=10% Similarity=0.044 Sum_probs=51.3 Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCC Q ss_conf 01356889987530245543035411343232333310253212013345765200356777640577679997662532 Q gi|254780653|r 245 SDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVF 324 (400) Q Consensus 245 ~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~Gvf 324 (400) -+.++.+.+.++++|++|++-..+.--..-.........+-..++.+..++=+|..+-......=...-.....+....+ T Consensus 62 ~~l~~~l~~~~~~~GV~i~~~~~V~~i~~~~~~v~~v~t~~~~i~ad~VI~A~G~~~~~~~~~lg~~~~~~~~~~~~~~~ 141 (199) T 2gag_B 62 DHVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRGTIHAGKVALAGAGHSSVLAEMAGFEASPIISKTPIQNL 141 (199) T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTCCEEEEEEEECCGGGHHHHHHHHTCCSCCEEEECSSBTE T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEECCCEEEEEECCCCEEECCEEEECCCCHHHHHHHCCCCCCEEEEEECCCCE T ss_conf 99999999999867989994775899999699069999279745421058855704387898649729808988578999 No 61 >>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli} (A:1-108,A:251-276) Probab=23.83 E-value=46 Score=13.93 Aligned_cols=59 Identities=17% Similarity=0.082 Sum_probs=40.6 Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHC-CCEEEECH Q ss_conf 321000332556577765331016678718999607802557889987730-68888620 Q gi|254780653|r 163 HLLPSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKK-VDKLVIGG 221 (400) Q Consensus 163 ~~lps~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k-~D~iiigG 221 (400) -.+|..-...+..-++.+.+..+...--++..-+....++....++.++.+ +|.|++.+ T Consensus 7 vi~~~~~~~f~~~i~~gi~~~a~~~G~~l~i~~~~~d~~~e~~~i~~l~~~~vDGIIi~~ 66 (134) T 2vk2_A 7 FSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAP 66 (134) T ss_dssp EEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECC T ss_pred EEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 996899899999999999999998599899995899999999999999975999999832 No 62 >>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, ATP-binding cassette, cytoplasm; HET: ADP; 3.20A {Geobacillus stearothermophilus 10} (A:620-714,A:864-972) Probab=23.10 E-value=48 Score=13.84 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=7.9 Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEC Q ss_conf 999988989999988980999913 Q gi|254780653|r 38 RIERVVPTILELVEKKAKVVIFSH 61 (400) Q Consensus 38 RI~~~~pTI~~l~~~~akvii~SH 61 (400) .....+..|+.|-++|..||+++| T Consensus 115 ~~~~l~~~L~~L~~~G~TVIiVtH 138 (204) T 2r6f_A 115 DIARLLDVLHRLVDNGDTVLVIEH 138 (204) T ss_dssp HHHHHHHHHHHHHHTTCEEEEECC T ss_pred HHHHHHHHHHHHHHCCCEEEEEEC T ss_conf 999999999999976999999917 No 63 >>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} (A:) Probab=23.10 E-value=48 Score=13.84 Aligned_cols=67 Identities=10% Similarity=-0.053 Sum_probs=40.0 Q ss_pred HCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCC Q ss_conf 01599689998201671318577725899998898999998898099991377888984733224788887643101335 Q gi|254780653|r 11 RDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIAESILHKNI 90 (400) Q Consensus 11 ~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l~~~l~~~V 90 (400) .+++||+||| .- -..-| -.-+-+.|.++|++|++.++. .-.+....+.+++.-...+ T Consensus 8 ~~l~gK~vlI-------TG-----as~GI--G~aiA~~la~~Ga~Vii~~r~---------~~~~~~~~~~~~~~~~~~~ 64 (256) T 3gaf_A 8 FHLNDAVAIV-------TG-----AAAGI--GRAIAGTFAKAGASVVVTDLK---------SEGAEAVAAAIRQAGGKAI 64 (256) T ss_dssp TCCTTCEEEE-------CS-----CSSHH--HHHHHHHHHHHTCEEEEEESS---------HHHHHHHHHHHHHTTCCEE T ss_pred CCCCCCEEEE-------EC-----CCCHH--HHHHHHHHHHCCCEEEEEECC---------HHHHHHHHHHHHHCCCCEE T ss_conf 6999998999-------38-----78789--999999999879999999798---------8999999999997499589 Q ss_pred CCCCCCCHHH Q ss_conf 4566631025 Q gi|254780653|r 91 LFVNDCIGST 100 (400) Q Consensus 91 ~fi~d~~g~~ 100 (400) .+..|...++ T Consensus 65 ~~~~d~~~~~ 74 (256) T 3gaf_A 65 GLECNVTDEQ 74 (256) T ss_dssp EEECCTTCHH T ss_pred EEECCCCCHH T ss_conf 9983479999 No 64 >>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} (A:1-45,A:167-277,A:559-671) Probab=22.99 E-value=48 Score=13.83 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=18.0 Q ss_pred CCCEEEEEEECCHHHHHHHHHHHHHCC----CEEEECH Q ss_conf 787189996078025578899877306----8888620 Q gi|254780653|r 188 KKPLVAIVGGSKVSTKITLLINLVKKV----DKLVIGG 221 (400) Q Consensus 188 ~~P~v~IiGGaKisdKi~~i~~L~~k~----D~iiigG 221 (400) .+-.|+|+||+-.+ -+..+..+.++. -.|++|| T Consensus 207 ~~viVFviGG~Tys-E~r~~~e~s~~~~~~~~~ViiGs 243 (269) T 1mqs_A 207 NKSLVFVVGGGNYL-EYQNLQEWAHSQLHNPKKVXYGS 243 (269) T ss_dssp SEEEEEEETCBCHH-HHHHHHHHHTTCCSSCCEEEEEE T ss_pred CEEEEEEECCCCHH-HHHHHHHHHHHCCCCCCEEEEEE T ss_conf 88999998991899-99999999985268994899943 No 65 >>3kjr_A Dihydrofolate reductase/thymidylate synthase; microfluidics, slipchip,structural genomics, PSI-2, protein structure initiative; HET: NAP NHE; 1.95A {Babesia bovis T2BO} PDB: 3i3r_A* 3k2h_A* (A:1-227,A:472-511) Probab=22.58 E-value=49 Score=13.77 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=12.0 Q ss_pred EEEEEEECCHHHHHHHHHHHHHC--CCEEEE Q ss_conf 18999607802557889987730--688886 Q gi|254780653|r 191 LVAIVGGSKVSTKITLLINLVKK--VDKLVI 219 (400) Q Consensus 191 ~v~IiGGaKisdKi~~i~~L~~k--~D~iii 219 (400) -+.|+||+.+ ...+++. +|.|.+ T Consensus 119 ~I~ViGG~~i------~~~~L~~~lvDei~l 143 (267) T 3kjr_A 119 KIFILGGSFL------YKEVLDNGLCDKIYL 143 (267) T ss_dssp CEEECCCHHH------HHHHHHTTCEEEEEE T ss_pred EEEEECCHHH------HHHHCCCCCCCEEEE T ss_conf 0899740999------998706245878999 No 66 >>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} (A:91-179) Probab=22.44 E-value=49 Score=13.76 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=15.7 Q ss_pred CCCEEEECCCHHHHHHHHCCCCCC Q ss_conf 885899748046998998488768 Q gi|254780653|r 347 RRIISIAGGGDTITALAHAGISNE 370 (400) Q Consensus 347 ~~~~sivGGGdT~aai~~~g~~~~ 370 (400) .++-.||||+-+....+++|+..- T Consensus 63 ~G~~vVIG~~~~~~~A~~~Gl~~v 86 (89) T 2pju_A 63 NGTEAVVGAGLITDLAEEAGMTGI 86 (89) T ss_dssp TTCCEEEESHHHHHHHHHTTSEEE T ss_pred CCCCEEECCHHHHHHHHHCCCCEE T ss_conf 699799998699999998499789 No 67 >>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutation, protein-DNA complex, DNA mispair, cancer, ABC transporter ATPase; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* (B:382-418,B:733-957) Probab=22.11 E-value=40 Score=14.33 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=6.9 Q ss_pred EEEEEECCHHHHHHHHH Q ss_conf 89996078025578899 Q gi|254780653|r 192 VAIVGGSKVSTKITLLI 208 (400) Q Consensus 192 v~IiGGaKisdKi~~i~ 208 (400) +.||-|+..+-|=-.|+ T Consensus 96 v~iITGpN~gGKSt~Lk 112 (262) T 2o8b_B 96 CVLVTGPNMGGKSTLMR 112 (262) T ss_dssp EEEEECCTTSSHHHHHH T ss_pred EEEEECCCCCCCHHHHH T ss_conf 89996788777188999 No 68 >>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} (A:) Probab=22.00 E-value=50 Score=13.70 Aligned_cols=22 Identities=18% Similarity=0.542 Sum_probs=12.0 Q ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEE Q ss_conf 8999607802557889987730688886 Q gi|254780653|r 192 VAIVGGSKVSTKITLLINLVKKVDKLVI 219 (400) Q Consensus 192 v~IiGGaKisdKi~~i~~L~~k~D~iii 219 (400) +.|+||+. +...+++.+|.+.+ T Consensus 97 i~v~GG~~------i~~~~l~liDel~l 118 (162) T 1vdr_A 97 AYVIGGAA------IYALFQPHLDRMVL 118 (162) T ss_dssp EEEEECHH------HHHHHGGGCSEEEE T ss_pred EEEEECHH------HHHHHHHHCCEEEE T ss_conf 99992648------87655521777999 No 69 >>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} (A:123-237) Probab=21.58 E-value=51 Score=13.65 Aligned_cols=101 Identities=14% Similarity=0.123 Sum_probs=50.8 Q ss_pred HHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 57776533101667871899960780255788998773068888620578999998301434333310000135688998 Q gi|254780653|r 175 KELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNVHQIAWE 254 (400) Q Consensus 175 kEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~Sl~e~~~~~~ak~i~~~ 254 (400) .+...+...+..+..-.++|+||.-+ -+.+...|...--++.+ ++-+..+...-..+....+.+. T Consensus 12 ~~~~~~~~~~~~~~~~~i~IiGgG~~--g~e~A~~l~~~g~~v~l-------------v~~~~~~~~~~~~~~~~~~~~~ 76 (115) T 1yqz_A 12 EDTDAIDQFIKANQVDKVLVVGAGYV--SLEVLENLYERGLHPTL-------------IHRSDKINKLMDADMNQPILDE 76 (115) T ss_dssp HHHHHHHHHHHHHTCCEEEEECCSHH--HHHHHHHHHHHTCEEEE-------------EESSSCCSTTSCGGGGHHHHHH T ss_pred CCCCCCCCCCCCCCCCEEEEEEEEEE--CCCCCCCEECCCCCCCE-------------EECCCCCCCCCHHHHHHHHHHH T ss_conf 43322122212345550578631100--01222110003232100-------------1100022332013455555421 Q ss_pred HHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCC Q ss_conf 7530245543035411343232333310253212013345 Q gi|254780653|r 255 AKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSII 294 (400) Q Consensus 255 a~~~~~~I~lP~D~~v~~~~~~~~~~~~~~~~~i~~~~~i 294 (400) .+++|.++++-.-+..-.+ ......+-+.++.+..+ T Consensus 77 l~~~gI~~~~~~~v~~i~~----~~v~~~~g~~i~~D~vi 112 (115) T 1yqz_A 77 LDKREIPYRLNEEINAING----NEITFKSGKVEHYDMII 112 (115) T ss_dssp HHHTTCCEEESCCEEEEET----TEEEETTSCEEECSEEE T ss_pred CCCCEEEEEECCEEEEEEE----CCCCCCCCCCCCCCCCE T ss_conf 1234069985767777640----23322111222233422 No 70 >>1ig0_A Thiamin pyrophosphokinase; protein-substrate complex, compound active site, alpha-beta- alpha, beta sandwich, transferase; HET: VIB; 1.80A {Saccharomyces cerevisiae} (A:) Probab=21.48 E-value=52 Score=13.63 Aligned_cols=95 Identities=13% Similarity=0.110 Sum_probs=56.0 Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHH--------CCCCCCCCCCCC Q ss_conf 556577765331016678718999607802557889987730688886205789999983--------014343333100 Q gi|254780653|r 172 AMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQ--------GMGVGRSLCQRD 243 (400) Q Consensus 172 l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~--------G~~IG~Sl~e~~ 243 (400) .|++++..+.-+..+...+.++|+.|..+......+..+.++++.++-.=|=||-.+..+ |+.- .-++ -| T Consensus 20 ~~~~~~~~~~~l~~~~~~~~~~Iilng~~~~~~~~~~~~~~~~~~~I~aDGGan~L~d~~~~~~~~~~g~~P-d~ii-GD 97 (319) T 1ig0_A 20 NIRNKMNLKELIHPNEDENSTLLILNQKIDIPRPLFYKIWKLHDLKVCADGAANRLYDYLDDDETLRIKYLP-NYII-GD 97 (319) T ss_dssp CCCEEEESGGGTSCCTTSEEEEEECSSCCCSCHHHHHHHHHHCSEEEEETTHHHHHHHHSCSCHHHHTTSCC-SEEE-EC T ss_pred HCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCEEEEECCCHHHHHHHHCCCCCHHCCCCC-CEEE-CC T ss_conf 231412620134755677745999899788887999999966898999258488877654133202207889-9797-54 Q ss_pred CCHHHHHHHHHHHHCCCCCCCEEEE Q ss_conf 0013568899875302455430354 Q gi|254780653|r 244 FSDNVHQIAWEAKRSACEIIVPRDV 268 (400) Q Consensus 244 ~~~~ak~i~~~a~~~~~~I~lP~D~ 268 (400) +...-.+.....+.++++++-+.|. T Consensus 98 fDS~~~~~~~~~~~~~~~~~~~~d~ 122 (319) T 1ig0_A 98 LDSLSEKVYKYYRKNKVTIIKQTTQ 122 (319) T ss_dssp CTTSCHHHHHHHHHTTCEEEECCCS T ss_pred CCCCCHHHHHHHHHCCCEEEECCCC T ss_conf 8799989999998679769989876 No 71 >>1k2x_A Putative L-asparaginase; NTN hydrolase, asparginase, autoproteolysis; HET: CME; 1.65A {Escherichia coli} (A:72-139) Probab=20.90 E-value=53 Score=13.56 Aligned_cols=53 Identities=17% Similarity=0.210 Sum_probs=43.8 Q ss_pred HCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCC Q ss_conf 10166787189996078025578899877306888862057899999830143 Q gi|254780653|r 183 CFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGV 235 (400) Q Consensus 183 ~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~I 235 (400) +++...+-+-+|.+=..+..-|.+-+.++++..+.++.|--|..|.+..|+++ T Consensus 14 iMdG~t~~~gaV~~v~~v~nPi~vAr~vl~~~~h~~L~G~gA~~fA~~~G~~~ 66 (68) T 1k2x_A 14 VMDGNTLKAGAVAGVSHLRNPVLAARLVMEQSPHVMMIGEGAENFAFARGMER 66 (68) T ss_dssp EEETTTCCEEEEEEESSCSCHHHHHHHHHHHSSCSEEEHHHHHHHHHTTTCCC T ss_pred EEECCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCC T ss_conf 89779986136865155567899999998349984775377999999849963 No 72 >>1ytl_A Acetyl-COA decarbonylase/synthase complex epsilon subunit 2; structural genomics, protein structure initiative; 1.80A {Archaeoglobus fulgidus} (A:) Probab=20.73 E-value=53 Score=13.53 Aligned_cols=58 Identities=16% Similarity=0.286 Sum_probs=40.2 Q ss_pred HHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHC Q ss_conf 565777653310166787189996078025578899877306888862057899999830 Q gi|254780653|r 173 MQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQG 232 (400) Q Consensus 173 ~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G 232 (400) -...++.+-..+.+.+||.+ +-|.-+..--..+..|+++..--++.-.|+-..+..+| T Consensus 21 ~~~~i~~~~~~l~~AkrPvi--i~G~~~~~a~~~l~~lae~~~~pv~~t~~g~~~~~~kg 78 (174) T 1ytl_A 21 LLEKGKPVANMIKKAKRPLL--IVGPDMTDEMFERVKKFVEKDITVVATGSAITRFIDAG 78 (174) T ss_dssp ECCCHHHHHHHHHHCSSEEE--EECSCCCHHHHHHHHHHHTSSSEEEEETTHHHHHHHTT T ss_pred CHHHHHHHHHHHHHCCCCEE--EECCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCC T ss_conf 98999999999997799589--96975316599999999863998897134244302367 No 73 >>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} (A:1-123,A:316-361) Probab=20.64 E-value=54 Score=13.52 Aligned_cols=79 Identities=16% Similarity=0.217 Sum_probs=43.4 Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHH--HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCC Q ss_conf 258999988989999988980999913778889847332247--888876431013354566631025566553136464 Q gi|254780653|r 35 DVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLF--KVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGG 112 (400) Q Consensus 35 d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~--~v~~~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ 112 (400) +.+|.--+=.+++.|.+.|.+|.+-+--|..-+=.|..|.-. .+++.-+.+-..+|.+ .+.+...+.+..|++|. T Consensus 12 ~ErRValtP~~v~~L~~~G~~V~VE~GAG~~a~fsDe~Y~~aGA~I~~~~e~~~~aDiIl---~Vk~P~~~ei~~lk~G~ 88 (169) T 1pjc_A 12 QEFRVGLSPSSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAWSREMVV---KVKEPLPAEYDLMQKDQ 88 (169) T ss_dssp TCCCCSCCHHHHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHHTSSEEE---CSSCCCGGGGGGCCTTC T ss_pred CCCEECCCHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHCCCEEECCHHHHHCCCCEE---EECCCCHHHHHHHCCCC T ss_conf 981616789999999978999999689862479898999983999978878871278558---84589978986314675 Q ss_pred EEEC Q ss_conf 8982 Q gi|254780653|r 113 IILA 116 (400) Q Consensus 113 ilLL 116 (400) +++= T Consensus 89 ~lis 92 (169) T 1pjc_A 89 LLFT 92 (169) T ss_dssp EEEE T ss_pred EEEE T ss_conf 8999 No 74 >>1oao_C CODH, carbon monoxide dehydrogenase alpha subunit; electron transfer, oxidoreductase, acetyl-COA formation, WOOD/ljungdahl pathway; 1.90A {Moorella thermoacetica} (C:1-324) Probab=20.58 E-value=54 Score=13.51 Aligned_cols=71 Identities=15% Similarity=0.062 Sum_probs=54.6 Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCC-EEEEEEECCHHHH-HHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCC Q ss_conf 0003325565777653310166787-1899960780255-788998773068888620578999998301434 Q gi|254780653|r 166 PSYIGRAMQKELSMLESCFSESKKP-LVAIVGGSKVSTK-ITLLINLVKKVDKLVIGGGMANSFLVAQGMGVG 236 (400) Q Consensus 166 ps~aG~l~ekEi~~L~~~l~~~~~P-~v~IiGGaKisdK-i~~i~~L~~k~D~iiigG~lantfL~A~G~~IG 236 (400) ....||..+.+++.|-..+.+.+=| +++|+|.+.-++. ..+.+.|+++==-++..|-.+..|.++-+...| T Consensus 130 ~~~~Gf~~d~ilr~lg~~iv~G~I~Gv~~ivGC~~~~~~~~~iakel~~~d~lVl~~GC~~~~~~~~g~~t~~ 202 (324) T 1oao_C 130 PPWTGFIGDPVVRRFGIKMVDWTIPGEAIILGRAKDSKALAKIVKELMGMGFMLFICDEAVEQLLEENVKLGI 202 (324) T ss_dssp TTCCSSCCHHHHHHTHHHHTTTSSCCEEEEEECCSCHHHHHHHHHHHHHTTCEEEEETHHHHHHHHTTCCCBG T ss_pred CCCCCCCCCHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCC T ss_conf 8730666608899749751058777158996069984899999999986683787601089999870710277 No 75 >>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} (A:180-307) Probab=20.42 E-value=34 Score=14.81 Aligned_cols=48 Identities=15% Similarity=0.078 Sum_probs=29.3 Q ss_pred HHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHH Q ss_conf 777653310166787189996078025578899877306888862057 Q gi|254780653|r 176 ELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGM 223 (400) Q Consensus 176 Ei~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~l 223 (400) ||+.+-+++.+.+||.+.+=+|+.-+.-...+..|.++..--++.-.+ T Consensus 1 ~i~~~~~~l~~A~rPvii~G~g~~~~~a~~~l~~lae~~g~pv~~t~~ 48 (128) T 1efp_A 1 EVAESDRPELTSARRVVSGGRGLGSKESFAIIEELADKLGAAVGASRA 48 (128) T ss_dssp EECCCCSCCTTTCSEEEEECGGGCSSSTTHHHHHHHHHHTCEEEECHH T ss_pred EEECCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCEEEECHH T ss_conf 860134544245748998577446888999999999986994786076 No 76 >>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} (A:427-523,A:579-641) Probab=20.28 E-value=55 Score=13.47 Aligned_cols=76 Identities=14% Similarity=0.030 Sum_probs=53.5 Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC-CCCHHHHHHHHHHCCCCC Q ss_conf 7258999988989999988980999913778889847332247888876431013354566-631025566553136464 Q gi|254780653|r 34 ADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIAESILHKNILFVN-DCIGSTLSQSIASLSEGG 112 (400) Q Consensus 34 ~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l~~~l~~~V~fi~-d~~g~~~~~~i~~l~~g~ 112 (400) ....++...+.-|+.++++|-++++.++. .-+...++++|... +.++..+. +.....-...++.++.|. T Consensus 15 ~~~~k~~~~~~~i~~~~~~~~kvlIf~~~---------~~~~~~l~~~L~~~-~~~~~~~~g~~~~~~r~~~~~~f~~~~ 84 (160) T 1nkt_A 15 TEEAKYIAVVDDVAERYAKGQPVLIGTTS---------VERSEYLSRQFTKR-RIPHNVLNAKYHEQEATIIAVAGRRGG 84 (160) T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEESC---------HHHHHHHHHHHHHT-TCCCEEECSSCHHHHHHHHHTTTSTTC T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEECH---------HHHHHHHHHHHHHC-CCCHHHHCCHHHHHHHHHHHHCCCCCE T ss_conf 58999999999999999649977998401---------98899999999876-981532100104656767862789871 Q ss_pred EEECCHH Q ss_conf 8982424 Q gi|254780653|r 113 IILAENV 119 (400) Q Consensus 113 ilLLEN~ 119 (400) |++.-++ T Consensus 85 vlv~t~~ 91 (160) T 1nkt_A 85 VTVATNM 91 (160) T ss_dssp EEEEETT T ss_pred EEEEECC T ss_conf 8997223 Done!