Query         gi|254780653|ref|YP_003065066.1| phosphoglycerate kinase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 400
No_of_seqs    131 out of 2640
Neff          5.9 
Searched_HMMs 33803
Date          Wed Jun  1 16:04:19 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780653.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >16pk_A PGK, 3-phosphoglycerat 100.0       0       0  516.9  19.8  212  188-399     1-212 (212)
  2 >1vpe_A Phosphoglycerate kinas 100.0       0       0  510.3  19.9  213  186-399     1-214 (216)
  3 >1php_A 3-phosphoglycerate kin 100.0       0       0  506.9  16.0  185    2-187     1-185 (185)
  4 >1ltk_A Phosphoglycerate kinas 100.0       0       0  501.3  19.3  212  187-399     1-214 (214)
  5 >1php_A 3-phosphoglycerate kin 100.0       0       0  500.0  19.2  209  188-399     1-209 (209)
  6 >1vpe_A Phosphoglycerate kinas 100.0       0       0  503.5  15.6  181    3-184     1-181 (182)
  7 >1v6s_A Phosphoglycerate kinas 100.0       0       0  500.6  17.5  181    4-186     1-181 (190)
  8 >1qpg_A PGK, 3-phosphoglycerat 100.0       0       0  499.0  18.5  211  188-399     1-213 (214)
  9 >2cun_A Phosphoglycerate kinas 100.0       0       0  502.1  14.2  186    4-192     1-193 (208)
 10 >1hdi_A PGK, phosphoglycerate  100.0       0       0  490.0  20.1  210  188-398     1-212 (213)
 11 >1zmr_A Phosphoglycerate kinas 100.0       0       0  499.8  11.5  186    2-194     1-188 (195)
 12 >1ltk_A Phosphoglycerate kinas 100.0       0       0  494.6  13.9  185    1-186    11-211 (211)
 13 >1fw8_A PGK P72, phosphoglycer 100.0       0       0  495.1  12.7  210  189-399     1-212 (215)
 14 >1qpg_A PGK, 3-phosphoglycerat 100.0       0       0  491.8  13.7  185    1-187     2-201 (201)
 15 >16pk_A PGK, 3-phosphoglycerat 100.0       0       0  488.5  15.2  182    3-187     1-203 (203)
 16 >1v6s_A Phosphoglycerate kinas 100.0       0       0  477.8  17.0  199  186-387     1-199 (200)
 17 >1hdi_A PGK, phosphoglycerate  100.0       0       0  473.3  14.3  183    3-187     1-200 (200)
 18 >1zmr_A Phosphoglycerate kinas 100.0       0       0  461.5  16.7  192  188-388     1-192 (192)
 19 >2cun_A Phosphoglycerate kinas 100.0       0       0  461.6  14.8  196  188-388     1-202 (202)
 20 >1fw8_A PGK P72, phosphoglycer 100.0 5.6E-43       0  297.3   6.5  118   72-190     2-133 (200)
 21 >1fw8_A PGK P72, phosphoglycer  99.9 1.8E-27 5.4E-32  197.2   8.2   68    2-70    132-200 (200)
 22 >1d5t_A Guanine nucleotide dis  74.9     5.2 0.00016   20.0   4.5  119  210-341     3-129 (135)
 23 >1xpj_A Hypothetical protein;   71.9     6.8  0.0002   19.3   4.5   29   37-65     24-52  (126)
 24 >1pjq_A CYSG, siroheme synthas  65.7     7.5 0.00022   19.0   3.6   44    4-62      1-44  (108)
 25 >1kyq_A Met8P, siroheme biosyn  64.4     5.9 0.00017   19.7   2.9   39   10-63      8-46  (145)
 26 >3lk7_A UDP-N-acetylmuramoylal  62.8      11 0.00032   18.0   4.1   45  187-231    35-79  (141)
 27 >1ig3_A Thiamin pyrophosphokin  61.7      11 0.00034   17.9   5.0  140  149-323     2-150 (263)
 28 >1ii2_A Phosphoenolpyruvate ca  60.3     6.5 0.00019   19.4   2.5   91  134-225    81-210 (283)
 29 >2h9a_B CO dehydrogenase/acety  57.4     8.7 0.00026   18.6   2.7  103  172-300   106-211 (310)
 30 >2yzs_A Putative uncharacteriz  53.2     1.4 4.1E-05   23.8  -1.9   60   14-73     15-78  (79)
 31 >1f2t_B RAD50 ABC-ATPase; DNA   50.0      16 0.00048   16.9   3.2   49  295-347    58-113 (125)
 32 >1ii8_B RAD50 ABC-ATPase; MRE1  46.9      18 0.00053   16.6   3.0   41  306-350   102-142 (151)
 33 >1ewq_A DNA mismatch repair pr  44.9     9.6 0.00028   18.3   1.3   23  173-195   120-142 (215)
 34 >2oln_A NIKD protein; flavopro  44.4      21 0.00063   16.1   3.8   95  210-305     1-101 (168)
 35 >1aoe_A DHFR, dihydrofolate re  43.7     4.8 0.00014   20.3  -0.4   23  191-219   108-132 (192)
 36 >2zos_A MPGP, mannosyl-3-phosp  42.8     8.5 0.00025   18.7   0.8   47   29-83      9-55  (165)
 37 >2w9h_A DHFR, dihydrofolate re  41.9      22 0.00064   16.1   2.7   34  180-221    80-113 (159)
 38 >1j3b_A ATP-dependent phosphoe  40.2      10  0.0003   18.2   0.9   93  132-225    89-221 (295)
 39 >2hcu_A 3-isopropylmalate dehy  40.2     8.4 0.00025   18.7   0.4   57  114-170    58-123 (213)
 40 >1zdr_A Dihydrofolate reductas  39.9      24 0.00072   15.7   2.8   44  170-220    72-115 (164)
 41 >2fi1_A Hydrolase, haloacid de  39.5      25 0.00075   15.6   3.4   78   39-119    18-95  (124)
 42 >3k2w_A Betaine-aldehyde dehyd  38.8      26 0.00077   15.5   5.3  165  147-322    23-191 (191)
 43 >1w2l_A Cytochrome oxidase sub  38.5      15 0.00046   17.0   1.6   28  159-186    35-62  (64)
 44 >3dau_A Dihydrofolate reductas  38.0      22 0.00066   16.0   2.3   39  173-220    75-113 (159)
 45 >1mv8_A GMD, GDP-mannose 6-deh  37.9      27  0.0008   15.5   3.4  126   10-162    20-146 (148)
 46 >2bty_A Acetylglutamate kinase  36.9      28 0.00082   15.4   4.1   47   12-65     18-64  (282)
 47 >2q3e_A UDP-glucose 6-dehydrog  36.9      28 0.00082   15.4   3.4   42   13-59      1-42  (141)
 48 >2w3w_A Dihydrofolate reductas  36.4      20 0.00059   16.3   1.9   74  297-374    46-123 (167)
 49 >3dfz_A SIRC, precorrin-2 dehy  36.0      25 0.00074   15.6   2.3   24  188-213    30-53  (126)
 50 >2go7_A Hydrolase, haloacid de  34.9      30 0.00089   15.2   3.3   26   40-65     18-43  (137)
 51 >2jfg_A UDP-N-acetylmuramoylal  34.8      30 0.00089   15.1   3.9   59  176-235    26-85  (145)
 52 >2brx_A Uridylate kinase; UMP   33.4      32 0.00094   15.0   5.3  202  177-389     8-237 (244)
 53 >2o8b_A DNA mismatch repair pr  31.5      29 0.00086   15.2   2.1   23  173-195   143-165 (241)
 54 >1jbw_A Folylpolyglutamate syn  31.0      35   0.001   14.7   5.0   47  175-221    22-69  (131)
 55 >3ia4_A Dihydrofolate reductas  30.5      30 0.00088   15.2   2.0   43  170-220    73-115 (162)
 56 >1ae1_A Tropinone reductase-I;  30.3      36  0.0011   14.7   5.9   76    1-100     8-83  (273)
 57 >1wb9_A DNA mismatch repair pr  29.8      36  0.0011   14.6   2.3   42  172-213   102-151 (201)
 58 >1ges_A Glutathione reductase;  26.3      42  0.0012   14.2   6.8  119  165-300     6-125 (142)
 59 >1ytm_A Phosphoenolpyruvate ca  25.7      16 0.00048   16.9  -0.1   73  131-204    87-160 (249)
 60 >2gag_B Heterotetrameric sarco  25.2      44  0.0013   14.1   6.6   80  245-324    62-141 (199)
 61 >2vk2_A YTFQ, ABC transporter   23.8      46  0.0014   13.9   5.8   59  163-221     7-66  (134)
 62 >2r6f_A Excinuclease ABC subun  23.1      48  0.0014   13.8   4.3   24   38-61    115-138 (204)
 63 >3gaf_A 7-alpha-hydroxysteroid  23.1      48  0.0014   13.8   5.5   67   11-100     8-74  (256)
 64 >1mqs_A SLY1 protein, SLY1P; S  23.0      48  0.0014   13.8   3.4   33  188-221   207-243 (269)
 65 >3kjr_A Dihydrofolate reductas  22.6      49  0.0014   13.8   4.4   23  191-219   119-143 (267)
 66 >2pju_A Propionate catabolism   22.4      49  0.0015   13.8   3.2   24  347-370    63-86  (89)
 67 >2o8b_B DNA mismatch repair pr  22.1      40  0.0012   14.3   1.4   17  192-208    96-112 (262)
 68 >1vdr_A DHFR, dihydrofolate re  22.0      50  0.0015   13.7   3.0   22  192-219    97-118 (162)
 69 >1yqz_A Coenzyme A disulfide r  21.6      51  0.0015   13.6   6.7  101  175-294    12-112 (115)
 70 >1ig0_A Thiamin pyrophosphokin  21.5      52  0.0015   13.6   5.0   95  172-268    20-122 (319)
 71 >1k2x_A Putative L-asparaginas  20.9      53  0.0016   13.6   4.7   53  183-235    14-66  (68)
 72 >1ytl_A Acetyl-COA decarbonyla  20.7      53  0.0016   13.5   4.0   58  173-232    21-78  (174)
 73 >1pjc_A Protein (L-alanine deh  20.6      54  0.0016   13.5   1.8   79   35-116    12-92  (169)
 74 >1oao_C CODH, carbon monoxide   20.6      54  0.0016   13.5   7.1   71  166-236   130-202 (324)
 75 >1efp_A ETF, protein (electron  20.4      34   0.001   14.8   0.7   48  176-223     1-48  (128)
 76 >1nkt_A Preprotein translocase  20.3      55  0.0016   13.5   7.3   76   34-119    15-91  (160)

No 1  
>>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis, transferase, bisubstrate, analog; HET: BIS EPE; 1.60A {Trypanosoma brucei} (A:204-415)
Probab=100.00  E-value=0  Score=516.88  Aligned_cols=212  Identities=40%  Similarity=0.683  Sum_probs=208.5

Q ss_pred             CCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             78718999607802557889987730688886205789999983014343333100001356889987530245543035
Q gi|254780653|r  188 KKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRD  267 (400)
Q Consensus       188 ~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D  267 (400)
                      .||+++||||||+||||++|++|++|||+|++||+||||||+|+|++||+|++|++.++.++++++++++++++|++|+|
T Consensus         1 pRP~vaIlGGaKvsdKi~~l~~ll~k~D~iligG~ma~~Fl~A~G~~iG~s~~e~~~~~~a~~i~~~a~~~~~kI~lPvD   80 (212)
T 16pk_A            1 PRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMAYTFLKAQGYSIGKSKCEESKLEFARSLLKKAEDRKVQVILPID   80 (212)
T ss_dssp             CSSEEEEECSSCSGGGHHHHHHHGGGCSEEEECTTHHHHHHHHHTCCCTTCCCCGGGHHHHHHHHHHHHHTTCEEECCSS
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHCCEEEECCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             65517998525434379999988753543653222888999983982544312455443466774320025157752010


Q ss_pred             EECCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf             41134323233331025321201334576520035677764057767999766253227436588999999998611148
Q gi|254780653|r  268 VVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKER  347 (400)
Q Consensus       268 ~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~~~  347 (400)
                      |+|+++++...+.++++.+++|++|+++||||+|++.|+++|.+|+|||||||||+||+++|+.||.+++++++++++++
T Consensus        81 ~~v~~~~~~~~~~~~~~~~~i~~~~~~~DIG~~Ti~~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~l~~aia~~t~~~  160 (212)
T 16pk_A           81 HVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQTIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGTHEH  160 (212)
T ss_dssp             EEEESSSSCCSSCEECSSSCCCTTCEEEEECHHHHHHHHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             33031123344430023222346436777777666677776651245889555021115616389999999999841448


Q ss_pred             CCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCHHHHHHCCC
Q ss_conf             8589974804699899848876864687507998998748998689884079
Q gi|254780653|r  348 RIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALSGH  399 (400)
Q Consensus       348 ~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~~L~G~~LPgi~aL~~~  399 (400)
                      +++||||||||++|++++|+.++|+||||||||+|+||+|++||||+||+++
T Consensus       161 ~a~sivGGGdt~aa~~~~g~~~~~shvSTgGGA~L~~L~Gk~LPgieaL~~~  212 (212)
T 16pk_A          161 GLMSIIGGGDSASAAELSGEAKRMSHVSTGGGASLELLEGKTLPGVTVLDDK  212 (212)
T ss_dssp             CCEEEECSHHHHHHHHHTTCTTTSSEECSCHHHHHHHHTTCCCHHHHTSCBC
T ss_pred             CCEEEECCHHHHHHHHHCCCCCCCEEEECCHHHHHHHHCCCCCCHHHHHHCC
T ss_conf             9989987789999999719745870797778999999879996257785069


No 2  
>>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability, crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga maritima} (A:183-398)
Probab=100.00  E-value=0  Score=510.29  Aligned_cols=213  Identities=42%  Similarity=0.722  Sum_probs=206.8

Q ss_pred             CCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCE
Q ss_conf             66787189996078025578899877306888862057899999830143433331000013568899875302455430
Q gi|254780653|r  186 ESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVP  265 (400)
Q Consensus       186 ~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP  265 (400)
                      ||+||+++||||+|++|||++|++|+++||++++||+|||+||+|+|++||+|++|++..+.++++++++++++++|++|
T Consensus         1 nP~rP~vaIlGGaKv~dKi~vi~~ll~k~D~iligG~ma~~Fl~a~G~~iG~s~~e~~~~~~~~~i~~~a~~~~~~i~lP   80 (216)
T 1vpe_A            1 NPEKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDKIDLAKELVEKAKEKGVEIVLP   80 (216)
T ss_dssp             CCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTTHHHHHHHTSCCCTTSCCCGGGHHHHHHHHHHHHHTTCEEECC
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEECCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             14675069985353230799999888630323324237899999759967876312125678999999767529864333


Q ss_pred             EEEECCCCCCCCCCCCCCCCCE-ECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             3541134323233331025321-201334576520035677764057767999766253227436588999999998611
Q gi|254780653|r  266 RDVVVAREMKTGIPTQVVSAQS-VPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLT  344 (400)
Q Consensus       266 ~D~~v~~~~~~~~~~~~~~~~~-i~~~~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~  344 (400)
                      +|++|+++++.+.++..++.++ +|++|+++||||+|++.|+++|.+|+|||||||||+||+++|+.||.+|++++++++
T Consensus        81 ~D~~v~~~~~~~~~~~~~~~~~~ip~~~~~~DIGp~Ti~~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~l~~aia~~t  160 (216)
T 1vpe_A           81 VDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFKQKLSDAKTVVWNGPMGVFEIDDFAEGTKQVALAIAALT  160 (216)
T ss_dssp             SEEEEESSCSTTCCCEEEETTTCCCTTCEEEEECHHHHHHHHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCCCCCCEECCCCCCCCCCEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             10232100145664202221237987753213662257899987455767999756122136624179999999999873


Q ss_pred             CCCCCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCHHHHHHCCC
Q ss_conf             1488589974804699899848876864687507998998748998689884079
Q gi|254780653|r  345 KERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALSGH  399 (400)
Q Consensus       345 ~~~~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~~L~G~~LPgi~aL~~~  399 (400)
                      + ++++||+|||||++|++++|+.++|+||||||||+|+||+|++||||+||++.
T Consensus       161 ~-~~~~sivGGGdt~~ai~~~g~~~~~shvSTgGGA~Le~L~Gk~LPgv~aL~~~  214 (216)
T 1vpe_A          161 E-KGAITVVGGGDSAAAVNKFGLEDKFSHVSTGGGASLEFLEGKELPGIASMRIK  214 (216)
T ss_dssp             H-TTCEEEEESHHHHHHHHHTTCGGGSSEEESCHHHHHHHHTSSCCHHHHTSCBC
T ss_pred             C-CCCEEEEECHHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCHHHHHHHHC
T ss_conf             2-89989993789999999729867860895777999999879997189988635


No 3  
>>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus stearothermophilus} (A:1-185)
Probab=100.00  E-value=0  Score=506.87  Aligned_cols=185  Identities=41%  Similarity=0.702  Sum_probs=182.5

Q ss_pred             CCCCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHH
Q ss_conf             88877101001599689998201671318577725899998898999998898099991377888984733224788887
Q gi|254780653|r    2 SRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSI   81 (400)
Q Consensus         2 ~~~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~   81 (400)
                      |.++||+|+ |++||+||||||||||+++|+|+|++||++++|||++|+++||||||+||||||+|+.++++||+||+++
T Consensus         1 m~~~ti~d~-d~~gK~VlvRvD~NvP~~~g~i~d~~RI~a~lpTI~~l~~~gakvvl~SHlGRPk~~~~~~~Sl~~va~~   79 (185)
T 1php_A            1 MNKKTIRDV-DVRGKRVFCRVDFNVPMEQGAITDDTRIRAALPTIRYLIEHGAKVILASHLGRPKGKVVEELRLDAVAKR   79 (185)
T ss_dssp             CCBCBGGGS-CCTTCEEEEECCCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCSSCCGGGCSHHHHHH
T ss_pred             CCCCCCCCC-CCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHH
T ss_conf             997740003-7689989999415878529968975899999999999997899899984888999988865675999999


Q ss_pred             HHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCHHHHHHHHCCCCCEEEECCHHHHCCCCCCEEEC
Q ss_conf             64310133545666310255665531364648982424303432100024665312436424754404401137633302
Q gi|254780653|r   82 AESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGL  161 (400)
Q Consensus        82 l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n~~~f~k~La~laDiyVnDAF~~aHR~haS~~gi  161 (400)
                      |+++||++|.|++||+|+.++++++.|++|+|+||||+|||+||++|+++|+++||+++|+|||||||||||+|||++||
T Consensus        80 L~~~L~~~V~f~~d~~g~~~~~~i~~l~~g~illLENlRf~~~E~~~d~~fa~~La~l~DiyVnDAFg~aHR~haS~~gi  159 (185)
T 1php_A           80 LGELLERPVAKTNEAVGDEVKAAVDRLNEGDVLLLENVRFYPGEEKNDPELAKAFAELADLYVNDAFGAAHRAHASTEGI  159 (185)
T ss_dssp             HHHHHTSCCEECSCSSSHHHHHHHHTCCTTCEEECCCGGGSHHHHHTCHHHHHHHHTTCSEEEECCGGGTTSCCTTTTGG
T ss_pred             HHHHHCCCCCEECCCCCHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCHHHHHHHHHHHCCEEEECCCCHHHCCCCCCCCH
T ss_conf             99754567310003356779999971688878853535546400105499999987428899855400120248641240


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             33210003325565777653310166
Q gi|254780653|r  162 SHLLPSYIGRAMQKELSMLESCFSES  187 (400)
Q Consensus       162 ~~~lps~aG~l~ekEi~~L~~~l~~~  187 (400)
                      |+++|+|||+|||+|+++|++++++|
T Consensus       160 ~~~lp~~aG~l~e~El~~L~k~~~~P  185 (185)
T 1php_A          160 AHYLPAVAGFLMEKELEVLGKALSNP  185 (185)
T ss_dssp             GGTSCEEECHHHHHHHHHHHHHHHSC
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             21163777878999999999997388


No 4  
>>1ltk_A Phosphoglycerate kinase; PGK, glycolysis, glycerol, open conformation, ADP complex, selenomethionine, transferase; HET: AMP; 3.00A {Plasmodium falciparum} (A:212-425)
Probab=100.00  E-value=0  Score=501.31  Aligned_cols=212  Identities=42%  Similarity=0.667  Sum_probs=202.9

Q ss_pred             CCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCE
Q ss_conf             67871899960780255788998773068888620578999998-30143433331000013568899875302455430
Q gi|254780653|r  187 SKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVA-QGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVP  265 (400)
Q Consensus       187 ~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A-~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP  265 (400)
                      |+||+++||||+|++|||++|++|+++||+|++||+||||||+| +|+++|+|++|+++++.++++++.+++++++|++|
T Consensus         1 P~rP~vaIiGGaKvsdKi~vl~~ll~k~D~iligG~~a~~Fl~A~~g~~vg~sl~e~~~~~~a~~~~~~~~~~g~~I~lP   80 (214)
T 1ltk_A            1 PQRPLLAILGGAKVSDKIQLIKNLLDKVDRXIIGGGXAYTFKKVLNNXKIGTSLFDEAGSKIVGEIXEKAKAKNVQIFLP   80 (214)
T ss_dssp             CCSSEEEEEECSCSGGGHHHHHHHHTTCSEEEEESSHHHHHHHHHHCCCCTTSCCCTTGGGTHHHHHHHHHHTTCEEECC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             89882799837743038999998886246289632799999987327877863024566789999999998639965556


Q ss_pred             EEEECCCCCCCCCCCCCC-CCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             354113432323333102-5321201334576520035677764057767999766253227436588999999998611
Q gi|254780653|r  266 RDVVVAREMKTGIPTQVV-SAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLT  344 (400)
Q Consensus       266 ~D~~v~~~~~~~~~~~~~-~~~~i~~~~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~  344 (400)
                      +|++|+++++.+.+.+.+ +.+.+|++|+++||||+|++.|+++|++|+|||||||||+||+++|+.||.+|++++++++
T Consensus        81 vD~~v~~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~i~~aia~~t  160 (214)
T 1ltk_A           81 VDFKIADNFDNNANTKFVTDEEGIPDNWXGLDAGPKSIENYKDVILTSKTVIWNGPQGVFEXPNFAKGSIECLNLVVEVT  160 (214)
T ss_dssp             SEEEEESSSSSSSCEEEEETTTCCCTTCEEEEECHHHHHHHHHHHHTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCCCEEECCCCCCCCCCEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             66477503456776306324346764342111360667899987553888999898566567625379999999999984


Q ss_pred             CCCCCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCHHHHHHCCC
Q ss_conf             1488589974804699899848876864687507998998748998689884079
Q gi|254780653|r  345 KERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALSGH  399 (400)
Q Consensus       345 ~~~~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~~L~G~~LPgi~aL~~~  399 (400)
                      + +++|||||||||++|++++|+.++|+||||||||+|+||+|++||||+||++.
T Consensus       161 ~-~~~~sivGGGdt~~ai~~~g~~~~~shvSTGGGA~L~~L~Gk~LPgv~aL~~k  214 (214)
T 1ltk_A          161 K-KGAITIVGGGDTASLVEQQNKKNEISHVSTGGGASLELLEGKELPGVLALSNK  214 (214)
T ss_dssp             H-TTCEEEECCSTTHHHHHHHTCGGGSSEECCCSHHHHHHHTTCCCHHHHTSCC-
T ss_pred             H-CCCEEEEECHHHHHHHHHCCCCCCCEEEECCHHHHHHHHCCCCCCHHHHHCCC
T ss_conf             1-89979993889999999739856883897677999999879996436673169


No 5  
>>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus stearothermophilus} (A:186-394)
Probab=100.00  E-value=0  Score=500.01  Aligned_cols=209  Identities=41%  Similarity=0.693  Sum_probs=204.3

Q ss_pred             CCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             78718999607802557889987730688886205789999983014343333100001356889987530245543035
Q gi|254780653|r  188 KKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRD  267 (400)
Q Consensus       188 ~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D  267 (400)
                      +||+++||||||+||||++|++|+++||+|++||+|||+||+|+|++||+|++|++.++.+++++++|++++++|++|+|
T Consensus         1 erP~vaIlGGaKvsdKi~~l~~ll~k~D~iligG~~a~~Fl~a~G~~iG~s~~e~~~~~~~~~~~~~ak~~~~ki~~p~D   80 (209)
T 1php_A            1 DRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEEDKIELAKSFMEKAKEKGVRFYMPVD   80 (209)
T ss_dssp             CSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTHHHHHHHHTTCCCTTSCCCGGGHHHHHHHHHHHHHHTCEEECCSE
T ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCE
T ss_conf             99769998467377689999999753241676418999999986997773334300277999999876643984058842


Q ss_pred             EECCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf             41134323233331025321201334576520035677764057767999766253227436588999999998611148
Q gi|254780653|r  268 VVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKER  347 (400)
Q Consensus       268 ~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~~~  347 (400)
                      ++|+++++.+.++...++++||++|+++||||+|++.|+++|++|+|||||||||+||+++|+.||.+++++++++   +
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~DIG~~Ti~~~~~~I~~akti~wNGP~GvfE~~~F~~GT~~i~~aia~~---s  157 (209)
T 1php_A           81 VVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRDVIRESKLVVWNGPMGVFEMDAFAHGTKAIAEALAEA---L  157 (209)
T ss_dssp             EEEESSSSTTSCEEEEEGGGCCTTCEEEEECHHHHHHHHHHHHTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHC---T
T ss_pred             EEECCCCCCCCCCEEEEHHHCCCCCEEEEECHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHC---C
T ss_conf             4520035565672586523415686589827178999998645478899987835534663428999999999965---8


Q ss_pred             CCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCHHHHHHCCC
Q ss_conf             8589974804699899848876864687507998998748998689884079
Q gi|254780653|r  348 RIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALSGH  399 (400)
Q Consensus       348 ~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~~L~G~~LPgi~aL~~~  399 (400)
                      +++||||||||++|++++|+.++|+||||||||+|+||+|++||||++|+|+
T Consensus       158 ~a~sivGGGdt~~ai~~~g~~~~~shvSTgGGA~L~~L~Gk~LPgieaL~~~  209 (209)
T 1php_A          158 DTYSVIGGGDSAAAVEKFGLADKMDHISTGGGASLEFMEGKQLPGVVALEDK  209 (209)
T ss_dssp             TCEEEECSHHHHHHHHHTTCGGGSSEECSCTHHHHHHHTTCCCHHHHTSCBC
T ss_pred             CCEEEEECHHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCCHHHHHCCC
T ss_conf             9869994759999999749867884795677999999879997458774069


No 6  
>>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability, crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga maritima} (A:1-182)
Probab=100.00  E-value=0  Score=503.48  Aligned_cols=181  Identities=39%  Similarity=0.662  Sum_probs=178.5

Q ss_pred             CCCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             88771010015996899982016713185777258999988989999988980999913778889847332247888876
Q gi|254780653|r    3 RLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIA   82 (400)
Q Consensus         3 ~~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l   82 (400)
                      +++||+|+ |++||+||||+|||||+++|+|+|++||++++|||++|+++||||||+||||||+|+..+.+||+||+++|
T Consensus         1 ~~~ti~d~-d~~gK~VlvRvD~NVP~~~g~I~dd~RI~~~lpTI~~ll~~gakvvl~SHlGRPk~~~~~~~SL~~va~~L   79 (182)
T 1vpe_A            1 EKMTIRDV-DLKGKRVIMRVDFNVPVKDGVVQDDTRIRAALPTIKYALEQGAKVILLSHLGRPKGEPSPEFSLAPVAKRL   79 (182)
T ss_dssp             CBCBGGGS-CCTTCEEEEECCCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCSSCCGGGCSHHHHHHH
T ss_pred             CCCCHHHC-CCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             98762003-74799899994347751299378758999999999999978998999827889999879766879999999


Q ss_pred             HHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCHHHHHHHHCCCCCEEEECCHHHHCCCCCCEEECC
Q ss_conf             43101335456663102556655313646489824243034321000246653124364247544044011376333023
Q gi|254780653|r   83 ESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLS  162 (400)
Q Consensus        83 ~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n~~~f~k~La~laDiyVnDAF~~aHR~haS~~gi~  162 (400)
                      +++|+++|.|++||+|+.++++++.|++|+|+||||+|||+||++|+++|+++||+++|+|||||||||||+||||+|||
T Consensus        80 ~~~L~~~V~f~~d~~g~~~~~~i~~l~~G~ilLLEN~RF~~~E~~n~~~fa~~LA~l~DiyVnDAFg~aHR~haS~~gi~  159 (182)
T 1vpe_A           80 SELLGKEVKFVPAVVGDEVKKAVEELKEGEVLLLENTRFHPGETKNDPELAKFWASLADIHVNDAFGTAHRAHASNVGIA  159 (182)
T ss_dssp             HHHHTSCCEEESCSSSHHHHHHHHTCCTTEEEEECCGGGSTHHHHTCHHHHHHHHTTCSEEEECCGGGTTSCCTTTTGGG
T ss_pred             HHHHCCCEEEEECCCCHHHHHHHHCCCCCCEEEEHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHCCCCCEECHH
T ss_conf             98636536885035865889986147887589726555320223324778999860666256254246650587500222


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             3210003325565777653310
Q gi|254780653|r  163 HLLPSYIGRAMQKELSMLESCF  184 (400)
Q Consensus       163 ~~lps~aG~l~ekEi~~L~~~l  184 (400)
                      +++|||||+|||+|+++|++++
T Consensus       160 ~~lp~~aG~l~ekEl~~l~k~l  181 (182)
T 1vpe_A          160 QFIPSVAGFLMEKEIKFLSKVT  181 (182)
T ss_dssp             GTSCEEECHHHHHHHHHHHHHH
T ss_pred             HHCCHHCCHHHHHHHHHHHHHH
T ss_conf             4260000157898898764220


No 7  
>>1v6s_A Phosphoglycerate kinase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 1.50A {Thermus thermophilus} (A:1-180,A:381-390)
Probab=100.00  E-value=0  Score=500.62  Aligned_cols=181  Identities=40%  Similarity=0.603  Sum_probs=177.4

Q ss_pred             CCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             87710100159968999820167131857772589999889899999889809999137788898473322478888764
Q gi|254780653|r    4 LRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIAE   83 (400)
Q Consensus         4 ~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l~   83 (400)
                      |+||+|+ |++||+||||+|||||+++|+|+|++||++++|||+||+++|||+||+||||||+++ ++++||+||+++|+
T Consensus         1 ~~ti~d~-d~~gK~VlvRvD~NVP~~~G~I~dd~RI~a~lpTIk~ll~~gakvvl~SHlGRP~~~-~~~~Sl~~va~~L~   78 (190)
T 1v6s_A            1 MRTLLDL-DPKGKRVLVRVDYNVPVQDGKVQDETRILESLPTLRHLLAGGASLVLLSHLGRPKGP-DPKYSLAPVGEALR   78 (190)
T ss_dssp             CCBGGGS-CCTTCEEEEECCCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCSSC-CGGGCSHHHHHHHH
T ss_pred             CCCHHHC-CCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC-CCCCCHHHHHHHHH
T ss_conf             9730215-878999999940476763993897489999999999999789989999448999998-97712799999997


Q ss_pred             HHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCHHHHHHHHCCCCCEEEECCHHHHCCCCCCEEECCC
Q ss_conf             31013354566631025566553136464898242430343210002466531243642475440440113763330233
Q gi|254780653|r   84 SILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSH  163 (400)
Q Consensus        84 ~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n~~~f~k~La~laDiyVnDAF~~aHR~haS~~gi~~  163 (400)
                      ++||++|.|++||+|+.++++++.|++|+|+||||+|||+||++|+++|+++||+++|+|||||||||||+|||++|||+
T Consensus        79 ~lLg~~V~f~~d~~g~~~~~~i~~l~~G~IlLLENlRf~~~Ee~n~~~fa~~LA~l~DiyVNDAF~~aHR~haS~~gi~~  158 (190)
T 1v6s_A           79 AHLPEARFAPFPPGSEEARREAEALRPGEVLLLENVRFEPGEEKNDPELSARYARLGEAFVLDAFGSAHRAHASVVGVAR  158 (190)
T ss_dssp             HHCTTEEECCSCTTSHHHHHHHHTCCTTCEEECSCGGGSTTTTTTCHHHHHHHGGGCSEEEECCGGGTTSCCCCCCCGGG
T ss_pred             HHCCCCEEEEECCCCCCHHHCCCCCCCCCEEEEHHHHHCCCCCCCCHHHHHHHHHCCCEEEECCHHHHHHHCCCHHCCCC
T ss_conf             52375326542024431000013466652787521332454000662776766523777886214666551422105200


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             21000332556577765331016
Q gi|254780653|r  164 LLPSYIGRAMQKELSMLESCFSE  186 (400)
Q Consensus       164 ~lps~aG~l~ekEi~~L~~~l~~  186 (400)
                      ++|||||++||+|+++|+++++.
T Consensus       159 ~lps~aG~lmekEl~~L~k~l~~  181 (190)
T 1v6s_A          159 LLPAYAGFLMEKEVRALSRLLKT  181 (190)
T ss_dssp             TSCEEECHHHHHHHHHHHTTTSC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             02056789999999999999859


No 8  
>>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A {Saccharomyces cerevisiae} (A:202-415)
Probab=100.00  E-value=0  Score=498.99  Aligned_cols=211  Identities=37%  Similarity=0.606  Sum_probs=201.8

Q ss_pred             CCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHH-HHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEE
Q ss_conf             787189996078025578899877306888862057899999-8301434333310000135688998753024554303
Q gi|254780653|r  188 KKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLV-AQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPR  266 (400)
Q Consensus       188 ~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~-A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~  266 (400)
                      .||+++|+||||+||||++|++|+++||+|++||+|||+||+ |+|++||+|++|++.++.++++++.+++++++|++|+
T Consensus         1 tRP~vaIlGGaKvsdKi~~l~~Ll~kvD~iligG~~a~~Fl~aa~G~~ig~s~~e~~~~~~~~~~~~~~~~~~~~I~lPv   80 (214)
T 1qpg_A            1 TRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPV   80 (214)
T ss_dssp             CSSEEEEECSSCSGGGHHHHHHHTTTCSEEEECGGGHHHHHHHHSCCCCCSCCCCHHHHHHHHHHHHHHHHHTCEEECCS
T ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf             99869998446353589999988752022551528999998742335578516665400028999999997499473024


Q ss_pred             EEECCCCCCCCCCCC-CCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             541134323233331-0253212013345765200356777640577679997662532274365889999999986111
Q gi|254780653|r  267 DVVVAREMKTGIPTQ-VVSAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTK  345 (400)
Q Consensus       267 D~~v~~~~~~~~~~~-~~~~~~i~~~~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~  345 (400)
                      |++|+++++.+.+.+ +.+.+.+|++|+++||||+|++.|+++|++|+|||||||||+||+++|+.||.++++++++.++
T Consensus        81 D~~v~~~~~~~~~~~~v~~~~~ip~~~~~~DIG~~Ti~~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~i~~aia~~~~  160 (214)
T 1qpg_A           81 DFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSA  160 (214)
T ss_dssp             EEEEESSSSSSCCCCEEETTTCCCTTCEEEEECHHHHHHHHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             67984454554673252563546876500345577899999999877988997675453565240689999999997116


Q ss_pred             CCCCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCHHHHHHCCC
Q ss_conf             488589974804699899848876864687507998998748998689884079
Q gi|254780653|r  346 ERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALSGH  399 (400)
Q Consensus       346 ~~~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~~L~G~~LPgi~aL~~~  399 (400)
                       .+++||+|||||++|++++|+.++|+||||||||+|+||+|++||||+||+++
T Consensus       161 -~~~~sivGGGdt~~Ai~~~g~~~~~shvSTGGGA~L~~L~Gk~LPgieaL~~~  213 (214)
T 1qpg_A          161 -AGNTVIIGGGDTATVAKKYGVTDKISHVSTGGGASLELLEGKELPGVAFLSEK  213 (214)
T ss_dssp             -HTCEEEECCHHHHHHHHHTTCGGGSSEECCCTHHHHHHHTSCCCHHHHTSCBC
T ss_pred             -CCCEEEEECHHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCCHHHHHHHC
T ss_conf             -89839995789999999749856882593678999999879997279887508


No 9  
>>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000, riken structural genomics/proteomics initiative, RSGI, NPPSFA; HET: 3PG; 2.10A {Pyrococcus horikoshii OT3} (A:1-188,A:391-410)
Probab=100.00  E-value=0  Score=502.07  Aligned_cols=186  Identities=32%  Similarity=0.555  Sum_probs=180.3

Q ss_pred             CCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             87710100159968999820167131857772589999889899999889809999137788898473322478888764
Q gi|254780653|r    4 LRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIAE   83 (400)
Q Consensus         4 ~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l~   83 (400)
                      |+||+|+ |++||+||||+|||||+++|+|+|++||++++|||++|+++||||||+||||||+|+  +++||.||+++|+
T Consensus         1 i~ti~D~-dl~gK~VlvRvD~NVPi~~g~I~dd~RI~a~lpTIk~Ll~~gakVvl~SHlGRP~~~--~~~SL~pva~~Ls   77 (208)
T 2cun_A            1 MFRLEDF-NFHNKTVFLRVDLNSPMKDGKIISDARFKAVLPTIRYLIESGAKVVIGTHQGKPYSE--DYTTTEEHARVLS   77 (208)
T ss_dssp             CCBGGGS-CCTTCEEEEECCCCCCEETTEECCCHHHHHTHHHHHHHHHTTCEEEEECCCSCTTCT--TCCCSHHHHHHHH
T ss_pred             CCCCCCC-CCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC--CCCCHHHHHHHHH
T ss_conf             9860006-878999999942686530995897789999999999999789989997568999998--7675578999999


Q ss_pred             HHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCHH-------HHHHHHCCCCCEEEECCHHHHCCCCC
Q ss_conf             31013354566631025566553136464898242430343210002-------46653124364247544044011376
Q gi|254780653|r   84 SILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEERNDP-------DFVRMLSRNGDFYINDAFSVSHRAHA  156 (400)
Q Consensus        84 ~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n~~-------~f~k~La~laDiyVnDAF~~aHR~ha  156 (400)
                      ++||++|.|++||+|+.++++++.|++|+|+||||+|||+||++|++       +|+++||+++|+|||||||||||+||
T Consensus        78 ~~Lg~~V~fv~d~~G~~a~~~i~~l~~G~ilLLENvRF~~eE~~n~~~e~~~~~~~ak~LA~l~DiyVNDAFg~aHR~ha  157 (208)
T 2cun_A           78 ELLDQHVEYIEDIFGRYAREKIKELKSGEVAILENLRFSAEEVKNKPIEECEKTFLVKKLSKVIDYVVNDAFATAHRSQP  157 (208)
T ss_dssp             HHHTSCEEECSCSSSHHHHHHHHTCCTTCEEECSCGGGBTTTTSCCCHHHHTTSHHHHHHHTTCSEEEECCGGGTTCCCH
T ss_pred             HHHCCCCCCCCCCCHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCHHHHHHCCC
T ss_conf             98587522354211144543101466750797054012654111345033219999999852152002164466650354


Q ss_pred             CEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf             333023321000332556577765331016678718
Q gi|254780653|r  157 SITGLSHLLPSYIGRAMQKELSMLESCFSESKKPLV  192 (400)
Q Consensus       157 S~~gi~~~lps~aG~l~ekEi~~L~~~l~~~~~P~v  192 (400)
                      |++|||+++|+|||+|||+|+++|++++++|.-|.+
T Consensus       158 S~~gi~~~lp~~AG~LmekEi~~L~k~~~~p~~~~~  193 (208)
T 2cun_A          158 SLVGFARIKPMIMGFLMEKEIEALMRAYYSKELPVL  193 (208)
T ss_dssp             HHHTTTTTSCEEECHHHHHHHHHHHHHHTCCCCHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf             323301246420048999999875432127787379


No 10 
>>1hdi_A PGK, phosphoglycerate kinase; phosphotransferase, ternary complex, glycolysis; HET: AMP 3PG; 1.8A {Sus scrofa} (A:201-413)
Probab=100.00  E-value=0  Score=489.97  Aligned_cols=210  Identities=39%  Similarity=0.607  Sum_probs=201.8

Q ss_pred             CCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEE
Q ss_conf             7871899960780255788998773068888620578999998-301434333310000135688998753024554303
Q gi|254780653|r  188 KKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVA-QGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPR  266 (400)
Q Consensus       188 ~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A-~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~  266 (400)
                      +||+++|+||||+||||++|++|++|+|++++||+|+|||++| +|++||+|++|+++.+.++++++.+++++++|++|+
T Consensus         1 ~rP~vaIlGGaKvsdKi~vl~~Ll~k~d~lilgGgla~~fl~a~~G~~iG~s~~e~~~~~~~~~~~~~ak~~~~~i~lP~   80 (213)
T 1hdi_A            1 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEAGKKIVKNLMSKAAANGVKITLPV   80 (213)
T ss_dssp             CSSEEEEECCSCSGGGHHHHHHHHTTCSEEEECGGGHHHHHHHHHCCCBTTCCCCTTGGGTHHHHHHHHHHHTCEEECCC
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             99869997402112289999978840788999145899999986598678763105667776899999877224667885


Q ss_pred             EEECCCCCCCCCCCCC-CCCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             5411343232333310-253212013345765200356777640577679997662532274365889999999986111
Q gi|254780653|r  267 DVVVAREMKTGIPTQV-VSAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTK  345 (400)
Q Consensus       267 D~~v~~~~~~~~~~~~-~~~~~i~~~~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~  345 (400)
                      |++|+.+++.+.+++. .+.+.+|++|+++||||+|++.|+++|++|+|||||||||+||.++|+.||.+++++++++++
T Consensus        81 D~~v~~~~~~~~~~~~~~~~~~i~~~~~~~DIGp~Ti~~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~i~~aia~~~~  160 (213)
T 1hdi_A           81 DFVTADKFDEQAKIGQATVASGIPAGWMGLDCGPKSSAKYSEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVVKATS  160 (213)
T ss_dssp             EEEEESSSSTTCCEEEEETTTCBCTTCEEEEECHHHHHHHHHHHHHCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHH
T ss_pred             CEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             33422333443333333333444410100225616799999985248779997871342366253899999999997415


Q ss_pred             CCCCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCHHHHHHCC
Q ss_conf             48858997480469989984887686468750799899874899868988407
Q gi|254780653|r  346 ERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALSG  398 (400)
Q Consensus       346 ~~~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~~L~G~~LPgi~aL~~  398 (400)
                       ++|+||+|||||++|++++|+.++|+||||||||+|+||+|++||||++|++
T Consensus       161 -~ga~sivGGGdt~~ai~~~g~~~~~shvSTGGGA~L~~L~Gk~LPgieaL~~  212 (213)
T 1hdi_A          161 -RGCITIIGGGDTATCCAKWNTEDNVSHVSTGGGASLELLEGKVLPGVDALSN  212 (213)
T ss_dssp             -TTCEEEECTTHHHHHHHHTTCTTTSSEECSCHHHHHHHHTTCCCHHHHTSCB
T ss_pred             -CCCEEEEECHHHHHHHHHCCCCCCCEEEECCHHHHHHHHCCCCCCHHHHHHC
T ss_conf             -8988999488999999975997784089787799999987999726867413


No 11 
>>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A {Escherichia coli} (A:1-181,A:374-387)
Probab=100.00  E-value=0  Score=499.78  Aligned_cols=186  Identities=34%  Similarity=0.549  Sum_probs=179.1

Q ss_pred             CCCCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC-CCCCCCCHHHHHH
Q ss_conf             888771010015996899982016713185777258999988989999988980999913778889-8473322478888
Q gi|254780653|r    2 SRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQS-KSDKDCSLFKVVS   80 (400)
Q Consensus         2 ~~~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg-~~~~~~Sl~~v~~   80 (400)
                      |+++||+|+ |++||+||||||||||+++|+|+|++||++++|||++|+++||||||+||||||+| ++++.+||+||++
T Consensus         1 M~~~ti~d~-d~~gK~VlvRvD~NVPi~~g~I~dd~RI~a~lpTI~~ll~~gakvvl~SHlGRPk~~~~~~~~SL~~va~   79 (195)
T 1zmr_A            1 MSVIKMTDL-DLAGKRVFIRADLNVPVKDGKVTSDARIRASLPTIELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVN   79 (195)
T ss_dssp             -CCCBGGGS-CCTTCEEEEECCCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSSCBTTBCCGGGCSHHHHH
T ss_pred             CCCCCCCCC-CCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHCHHHHHH
T ss_conf             997605544-7589999999604777639918973999999999999997899899980489998998580216156999


Q ss_pred             HHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCHHHHHHHHCCCCCEEEECCHHHHCCCCCCEEE
Q ss_conf             76431013354566631025566553136464898242430343210002466531243642475440440113763330
Q gi|254780653|r   81 IAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITG  160 (400)
Q Consensus        81 ~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n~~~f~k~La~laDiyVnDAF~~aHR~haS~~g  160 (400)
                      +|+++|+++|.|++||+|+++      |++|+|+||||+|||+||++|++.|+++||+++|+|||||||||||+|||++|
T Consensus        80 ~L~~~Lg~~V~fv~D~~g~~~------l~~GeilLLENlRf~~eE~~nd~~fa~~LA~l~DiyVNDAFg~aHR~haS~~g  153 (195)
T 1zmr_A           80 YLKDKLSNPVRLVKDYLDGVD------VAEGELVVLENVRFNKGEKKDDETLSKKYAALCDVFVMDAFGTAHRAQASTHG  153 (195)
T ss_dssp             HHHHHCSSCEEEESCCTTCCC------CCTTCEEEECCGGGSTTTTTTCHHHHHHHHHTCSEEEECCGGGTTSCCCCCCC
T ss_pred             HHHHHHCCCCEEEEECCCHHH------CCCCCEEEHHHHHHCCCCCCCCCHHHHHHCCCCCEEEECCHHHHHCCCCCCCC
T ss_conf             999985898434210256022------28763887043451547655641223200455618995460033046753112


Q ss_pred             CCCCCC-CCCCHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             233210-0033255657776533101667871899
Q gi|254780653|r  161 LSHLLP-SYIGRAMQKELSMLESCFSESKKPLVAI  194 (400)
Q Consensus       161 i~~~lp-s~aG~l~ekEi~~L~~~l~~~~~P~v~I  194 (400)
                      ||+++| ||||+|||+|+++|++++++|--|.++.
T Consensus       154 i~~~lp~s~AG~lmekEl~~L~~~~~~p~~~~~~~  188 (195)
T 1zmr_A          154 IGKFADVACAGPLLAAELDALGKALKEPVLPAVAM  188 (195)
T ss_dssp             HHHHSSEEEECHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf             16665677889999999999999982888715999


No 12 
>>1ltk_A Phosphoglycerate kinase; PGK, glycolysis, glycerol, open conformation, ADP complex, selenomethionine, transferase; HET: AMP; 3.00A {Plasmodium falciparum} (A:1-211)
Probab=100.00  E-value=0  Score=494.60  Aligned_cols=185  Identities=35%  Similarity=0.615  Sum_probs=179.6

Q ss_pred             CCCCCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCC-EEEEEECCCCCCCCCCCCCCHHHHH
Q ss_conf             988877101001599689998201671318577725899998898999998898-0999913778889847332247888
Q gi|254780653|r    1 MSRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKA-KVVIFSHLGRPQSKSDKDCSLFKVV   79 (400)
Q Consensus         1 M~~~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~a-kvii~SH~GRPkg~~~~~~Sl~~v~   79 (400)
                      |+.++||+|+.|++||+||||||||||+++|+|+||+||++++|||+||+++|| ||||+||||||+|+.++.+||+||+
T Consensus        11 m~~~~tl~d~~d~~gK~VlvRvD~NvPi~~g~I~Dd~RI~a~lpTIk~ll~~ga~kVil~SHlGRPkg~~~~~~SL~~va   90 (211)
T 1ltk_A           11 LGNKLSISDLKDIKNKKVLVRVDFNVPIENGIIKDTNRITATLPTINHLKKEGASKIILISHCGRPDGLRNEKYTLKPVA   90 (211)
T ss_dssp             SSSCCBSSSCCCCTTCEEEEEECCCCCEETTEESCTHHHHHTHHHHHHHHTTCCSEEEEECCCSCCTTSCCGGGCSHHHH
T ss_pred             HCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHH
T ss_conf             03676002122258998999941156513993897889999999999999879983999857888999889875759999


Q ss_pred             HHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCC---------------CCHHHHHHHHCCCCCEEE
Q ss_conf             87643101335456663102556655313646489824243034321---------------000246653124364247
Q gi|254780653|r   80 SIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEE---------------RNDPDFVRMLSRNGDFYI  144 (400)
Q Consensus        80 ~~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~---------------~n~~~f~k~La~laDiyV  144 (400)
                      ++|+++|+++|.|++||+|+.++++++.|++|+|+||||+|||+||+               +|+++|+++||++||+||
T Consensus        91 ~~L~~lLg~~V~f~~d~~g~~~~~~i~~l~~G~vlLLENlRf~~eE~~~~~~~~~~~~~~e~~n~~~~a~~LA~l~DiyV  170 (211)
T 1ltk_A           91 ETLKGLLGEEVLFLNDCVGKEVEDKINAAKENSVILLENLRFHIEEEGKGVDANGNKVKANKEDVEKFQNDLTKLADVFI  170 (211)
T ss_dssp             HHHHHHHTSCCEECSCSSSHHHHHHHHSSCTTEEEECCCGGGSHHHHSEEECTTCCEEECCHHHHHHHHHHHHTSCSEEE
T ss_pred             HHHHHHHCCCCEECCCCCCHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCEEE
T ss_conf             99999868775012566660167665227888889970375223123467432101221011217999999864167876


Q ss_pred             ECCHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             544044011376333023321000332556577765331016
Q gi|254780653|r  145 NDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLESCFSE  186 (400)
Q Consensus       145 nDAF~~aHR~haS~~gi~~~lps~aG~l~ekEi~~L~~~l~~  186 (400)
                      |||||||||+|||++||| ++|+|||+|||+|+++|++++++
T Consensus       171 NDAFg~aHR~haS~~gi~-~~~s~aG~lmekEl~~L~~~~~n  211 (211)
T 1ltk_A          171 NDAFGTAHRAHSSXVGVK-LNVKASGFLXKKELEYFSKALEN  211 (211)
T ss_dssp             EECTTSCSSCCHHHHCCC-CSEEEECHHHHHHHHHHHHHHTS
T ss_pred             ECCCCCCCCCCCCHHHHH-HCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             145532343555211110-01354225699999999999848


No 13 
>>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycolysis, mutant, permutation, permuted sequence, protein folding; 2.30A {Saccharomyces cerevisiae} (A:132-346)
Probab=100.00  E-value=0  Score=495.05  Aligned_cols=210  Identities=37%  Similarity=0.609  Sum_probs=201.2

Q ss_pred             CCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHH-HHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             87189996078025578899877306888862057899999-83014343333100001356889987530245543035
Q gi|254780653|r  189 KPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLV-AQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRD  267 (400)
Q Consensus       189 ~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~-A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D  267 (400)
                      ||+++|+||+|++|||++|++|++|||+|++||+|||+||+ ++|++||+|++|+++++.++++++.+++++++|++|+|
T Consensus         1 RP~vaIlGGaKv~dki~vl~~ll~k~D~iligG~~a~~Fl~aa~G~~ig~s~~e~~~~~~~~~~~~~~~~~~~~I~lPvD   80 (215)
T 1fw8_A            1 RPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVD   80 (215)
T ss_dssp             CSSEEEEEECSCSTTTHHHHHHHHTTCSEEEEEGGGHHHHHHHHSCCCCCSCCCCHHHHHHHHHHHHHHHHHTCEEECCS
T ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             89838998402075799999999963670897137999999875032358630446788899999998654113466566


Q ss_pred             EECCCCCCCCCCCC-CCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf             41134323233331-02532120133457652003567776405776799976625322743658899999999861114
Q gi|254780653|r  268 VVVAREMKTGIPTQ-VVSAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKE  346 (400)
Q Consensus       268 ~~v~~~~~~~~~~~-~~~~~~i~~~~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~~  346 (400)
                      |+|+++++.+.+++ +.+.+++|++|+++||||+|++.|+++|++|+|||||||||+||+++|+.||.++++++++.++ 
T Consensus        81 ~~v~~~~~~~~~~~~~~~~~~ip~~~~~~DIG~~Ti~~~~~~I~~aktI~wNGP~GvfE~~~F~~GT~~i~~aia~~~~-  159 (215)
T 1fw8_A           81 FIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSA-  159 (215)
T ss_dssp             EEEEESSSSTTCCEEEEETTTCCCTTCEEEEECHHHHHHHHHHHHHCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHH-
T ss_pred             CEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHC-
T ss_conf             4688655457765444464123566662114430358999987412777999777024236625189999999999603-


Q ss_pred             CCCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCHHHHHHCCC
Q ss_conf             88589974804699899848876864687507998998748998689884079
Q gi|254780653|r  347 RRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALSGH  399 (400)
Q Consensus       347 ~~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~~L~G~~LPgi~aL~~~  399 (400)
                      .+++||+|||||++|++++|+.++|+||||||||+|+||+|++||||+||++.
T Consensus       160 ~~~~sivGGGdt~~A~~~~g~~~~~shiSTGGGA~Le~L~Gk~LPgieaL~~~  212 (215)
T 1fw8_A          160 AGNTVIIGGGDTATVAKKYGVTDKISHVSTGGGASLELLEGKELPGVAFLSEK  212 (215)
T ss_dssp             HTTCEEEECTTHHHHHHHHTTCGGGSSEECSCSHHHHHHHTTCCCHHHHTSCS
T ss_pred             CCCCEEEEECHHHHHHHHHCCCCCCCEEEECCHHHHHHHHCCCCCCHHHHHHH
T ss_conf             68988999487999999972986797079787799999987999708999986


No 14 
>>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A {Saccharomyces cerevisiae} (A:1-201)
Probab=100.00  E-value=0  Score=491.83  Aligned_cols=185  Identities=36%  Similarity=0.610  Sum_probs=180.1

Q ss_pred             CCCCCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCE-EEEEECCCCCCCCCCCCCCHHHHH
Q ss_conf             9888771010015996899982016713185777258999988989999988980-999913778889847332247888
Q gi|254780653|r    1 MSRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAK-VVIFSHLGRPQSKSDKDCSLFKVV   79 (400)
Q Consensus         1 M~~~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~ak-vii~SH~GRPkg~~~~~~Sl~~v~   79 (400)
                      ||+++||+|+ |++||+||||||||||+++|+|+|++||++++|||++|+++||| ||++||+|||+|+.++++||+||+
T Consensus         2 m~~~~tl~d~-d~~gK~VlvRvD~NvPi~~g~I~dd~RI~a~lpTIk~l~~~gak~Vil~sHlGrpkg~~~~~~SL~~va   80 (201)
T 1qpg_A            2 LSSKLSVQDL-DLKDKRVFIRVDFNVPLDGKKITSNQRIVAALPTIKYVLEHHPRYVVLASHLGQPNGERNEKYSLAPVA   80 (201)
T ss_dssp             TTSBCBGGGC-CCTTCEEEEECCCCCCBSSSSBSCCHHHHHHHHHHHHHHTTCCSEEEEECCCSCCCSSCCGGGCSHHHH
T ss_pred             CCCCCCHHHC-CCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHH
T ss_conf             8667853542-757998999940566634996897589999999999999879988999733899999889876869999


Q ss_pred             HHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCC--------------CCHHHHHHHHCCCCCEEEE
Q ss_conf             87643101335456663102556655313646489824243034321--------------0002466531243642475
Q gi|254780653|r   80 SIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEE--------------RNDPDFVRMLSRNGDFYIN  145 (400)
Q Consensus        80 ~~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~--------------~n~~~f~k~La~laDiyVn  145 (400)
                      ++|+++||++|.|++||+|+.++++++.|++|+|+||||+|||+||+              +|++.|+++||++||+|||
T Consensus        81 ~~L~~lLg~~V~f~~d~~g~~~~~~i~~l~~GeilLLENlRF~~eE~~~~~~~~~~~~~e~~n~~~fa~~LA~l~DiyVn  160 (201)
T 1qpg_A           81 KELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENLRYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADVYIN  160 (201)
T ss_dssp             HHHHHHHTSCCEEESCSSSHHHHHHHHTCCTTEEEEECCGGGSHHHHTEEEETTEEEECCHHHHHHHHHHHHHTCSEEEE
T ss_pred             HHHHHHHCCCEEEECCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEC
T ss_conf             99999878971885576650455433116888689975022143300155432233322243289999998631557431


Q ss_pred             CCHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             440440113763330233210003325565777653310166
Q gi|254780653|r  146 DAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLESCFSES  187 (400)
Q Consensus       146 DAF~~aHR~haS~~gi~~~lps~aG~l~ekEi~~L~~~l~~~  187 (400)
                      ||||+|||+|||++||+ ++|+|||+|||+|+++|++++++|
T Consensus       161 DAFg~aHR~haS~~gi~-~~~s~aG~lmekEi~~L~~~~~~P  201 (201)
T 1qpg_A          161 DAFGTAHRAHSSMVGFD-LPQRAAGFLLEKELKYFGKALENP  201 (201)
T ss_dssp             CCGGGTTSCCHHHHCCC-CSCEEECHHHHHHHHHHHHHHSSC
T ss_pred             CCCCCCCCCCCEEECCC-CCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             53110020444011346-685513187999999999997098


No 15 
>>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis, transferase, bisubstrate, analog; HET: BIS EPE; 1.60A {Trypanosoma brucei} (A:1-203)
Probab=100.00  E-value=0  Score=488.47  Aligned_cols=182  Identities=32%  Similarity=0.647  Sum_probs=174.9

Q ss_pred             CCCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC--------------
Q ss_conf             887710100159968999820167131857772589999889899999889809999137788898--------------
Q gi|254780653|r    3 RLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSK--------------   68 (400)
Q Consensus         3 ~~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~--------------   68 (400)
                      +++||+|+ |++||+||||||||||+++|+|+|++||++++|||++|+++||||||+||||||||+              
T Consensus         1 ~~~ti~d~-d~~gK~VlvRvD~NVPi~~g~I~dd~RI~a~lpTI~~ll~~gakvil~SHlGRPk~~~~~~~~~~~~~~~~   79 (203)
T 16pk_A            1 EKKSINEC-DLKGKKVLIRVDFNVPVKNGKITNDYRIRSALPTLKKVLTEGGSCVLMSHLGRPKGIPMAQAGKIRSTGGV   79 (203)
T ss_dssp             CBCBGGGS-CCTTCEEEEEECCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCCBCGGGHHHHHHTTCC
T ss_pred             CCCCCCCC-CCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf             98740123-87899899993567555599589748899999999999978998999916899898765532222222331


Q ss_pred             --CCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCC----CHHHHHHHHCCCCCE
Q ss_conf             --47332247888876431013354566631025566553136464898242430343210----002466531243642
Q gi|254780653|r   69 --SDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEER----NDPDFVRMLSRNGDF  142 (400)
Q Consensus        69 --~~~~~Sl~~v~~~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~----n~~~f~k~La~laDi  142 (400)
                        .++++||.||+++|+++|+++|.|++||+|.  +++++.|++|+|+||||+|||+||++    |+++|+++||+++|+
T Consensus        80 ~~~~~~~SL~~va~~L~~lLg~~V~f~~d~~g~--~~~i~~l~~G~vlLLEN~RF~~eE~~~~~~n~~~fa~~LA~l~Di  157 (203)
T 16pk_A           80 PGFQQKATLKPVAKRLSELLLRPVTFAPDCLNA--ADVVSKMSPGDVVLLENVRFYKEEGSKKAKDREAMAKILASYGDV  157 (203)
T ss_dssp             TTCCGGGCSHHHHHHHHHHHTSCCEEESCTTSC--HHHHHTCCTTCEEEECCGGGBGGGGCSSHHHHHHHHHHHHTTCSE
T ss_pred             CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCH--HHHHHCCCCCEEEEECCHHCCCCCCCCCCCCHHHHHHHHHCCCCE
T ss_conf             236833470889999999867563235432100--001212566406861100023432332333027889988524758


Q ss_pred             EEECCHHHHCCCCCCEEECCCCCCC-CCCHHHHHHHHHHHHHCCCC
Q ss_conf             4754404401137633302332100-03325565777653310166
Q gi|254780653|r  143 YINDAFSVSHRAHASITGLSHLLPS-YIGRAMQKELSMLESCFSES  187 (400)
Q Consensus       143 yVnDAF~~aHR~haS~~gi~~~lps-~aG~l~ekEi~~L~~~l~~~  187 (400)
                      |||||||||||+||||+|||+++|+ |||+|||+|+++|++++++|
T Consensus       158 yVnDAFg~aHR~haS~~gi~~~lp~~~aG~L~ekEi~~L~~~~~~P  203 (203)
T 16pk_A          158 YISDAFGTAHRDSATMTGIPKILGNGAAGYLMEKEISYFAKVLGNP  203 (203)
T ss_dssp             EEEECGGGTTSCCTTTTHHHHHHTCCEECHHHHHHHHHHHHHHSCC
T ss_pred             EEECCCCHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9945620210467513412200102567999999999899997297


No 16 
>>1v6s_A Phosphoglycerate kinase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 1.50A {Thermus thermophilus} (A:181-380)
Probab=100.00  E-value=0  Score=477.80  Aligned_cols=199  Identities=40%  Similarity=0.695  Sum_probs=194.8

Q ss_pred             CCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCE
Q ss_conf             66787189996078025578899877306888862057899999830143433331000013568899875302455430
Q gi|254780653|r  186 ESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVP  265 (400)
Q Consensus       186 ~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP  265 (400)
                      ||+||+++|+||||++|||++|++|++|||+|++||+|||+||+|+|++||+|++|++..+.++++++++++++++|++|
T Consensus         1 nP~rP~vaIlGGaKv~dKi~vl~~ll~k~D~il~gG~ian~Fl~A~G~~iG~s~~e~~~~~~~~~~~~~ak~~~~~i~~P   80 (200)
T 1v6s_A            1 DPERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRLDLAKDLLGRAEALGVRVYLP   80 (200)
T ss_dssp             SCCSSEEEEECCSCGGGTHHHHHHHGGGCSEEEECSTTHHHHHHHTTCBCTTCCCCGGGHHHHHHHHHHHHHHTCEEECC
T ss_pred             HCCCCCEEEEECCCCCCHHHHHHHHHHHEEEEEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             43675089983454023699999887526368754307799999769867862444123566777777765305654322


Q ss_pred             EEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             35411343232333310253212013345765200356777640577679997662532274365889999999986111
Q gi|254780653|r  266 RDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTK  345 (400)
Q Consensus       266 ~D~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~  345 (400)
                      +|++|+.+++.+.+++..+.+++|++|+++||||+|++.|+++|++|+|||||||||+||+++|+.||.+|++++++   
T Consensus        81 ~D~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~Ti~~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~i~~aia~---  157 (200)
T 1v6s_A           81 EDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFARALEGARTVFWNGPMGVFEVPPFDEGTLAVGQAIAA---  157 (200)
T ss_dssp             SEEEEESSCCTTCCCEEEETTBCCTTCEEEEECHHHHHHHHHHTTTCSEEEEESCSSCTTSTTTTHHHHHHHHHHHT---
T ss_pred             EEEEECCCCCCCCCCCCCCCCEECCHHHHHCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH---
T ss_conf             01100122367753335551000110222100103466788765036459997574551357440799999999985---


Q ss_pred             CCCCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHCC
Q ss_conf             488589974804699899848876864687507998998748
Q gi|254780653|r  346 ERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEG  387 (400)
Q Consensus       346 ~~~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~~L~G  387 (400)
                      .++|+||+|||||++|++++|+.++|+||||||||+|+|||.
T Consensus       158 ~s~a~sivGGGdt~~ai~~~g~~~~~shvSTGGGA~L~~Le~  199 (200)
T 1v6s_A          158 LEGAFTVVGGGDSVAAVNRLGLKERFGHVSTGGGASLEFLEK  199 (200)
T ss_dssp             CSSCEEEEESHHHHHHHHTTTCGGGSSEECCSSSHHHHHHHH
T ss_pred             CCCCEEEEECHHHHHHHHHCCCCCCCEEEECCHHHHHHHHCC
T ss_conf             589979994889999999739867870898888999999879


No 17 
>>1hdi_A PGK, phosphoglycerate kinase; phosphotransferase, ternary complex, glycolysis; HET: AMP 3PG; 1.8A {Sus scrofa} (A:1-200)
Probab=100.00  E-value=0  Score=473.27  Aligned_cols=183  Identities=37%  Similarity=0.596  Sum_probs=174.2

Q ss_pred             CCCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCE-EEEEECCCCCCCC-CCCCCCHHHHHH
Q ss_conf             88771010015996899982016713185777258999988989999988980-9999137788898-473322478888
Q gi|254780653|r    3 RLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAK-VVIFSHLGRPQSK-SDKDCSLFKVVS   80 (400)
Q Consensus         3 ~~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~ak-vii~SH~GRPkg~-~~~~~Sl~~v~~   80 (400)
                      .++||+|+ |++|||||||||||||+++|+|+|++||++++|||++|+++||| |||+||||||+++ +++++||+||++
T Consensus         1 ~~~tl~d~-d~~gK~VlvRvD~NVP~~~g~I~Dd~RI~a~lpTI~~l~~~gak~Vil~sHlgRPk~~~~~~~~SL~~va~   79 (200)
T 1hdi_A            1 NKLTLDKL-NVKGKRVVMRVDFNVPMAAAQITNNARIKAAVPSIKFCLDDGAKSVVLMSHLGRPDGSPMPDKYSLQPVAA   79 (200)
T ss_dssp             CBCBGGGS-CCTTCEEEEECCCCCCBSSSSBSCCHHHHHHHHHHHHHHHTTCSEEEEECCCSCCCSSCCTTTSCSHHHHH
T ss_pred             CCCCHHHC-CCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHH
T ss_conf             98766334-85899899995046557599588789999999999999987999899987888999997885458799999


Q ss_pred             HHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCC---------------CCCCHHHHHHHHCCCCCEEEE
Q ss_conf             76431013354566631025566553136464898242430343---------------210002466531243642475
Q gi|254780653|r   81 IAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSE---------------EERNDPDFVRMLSRNGDFYIN  145 (400)
Q Consensus        81 ~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~---------------E~~n~~~f~k~La~laDiyVn  145 (400)
                      +|+++||++|.|++||+|+.+++++..|++|+|+||||+|||++               |++|++.|+++||+++|+|||
T Consensus        80 ~L~~~Lg~~V~f~~d~~g~~~~~~i~~l~~G~illLENvRF~~eE~~~~~~~~~~~~~~E~~~~~~~a~~LA~~~DiyVn  159 (200)
T 1hdi_A           80 ELKSALGKAVLFLKDCVGPAVEKACADPAAGSVILLENLRFHVEEEGKGKDASGNKAAGEPAKIKAFRASLSALGDVYVN  159 (200)
T ss_dssp             HHHHHHTSCCEECSCSSSHHHHHHHHSCCTTEEEECCCGGGSHHHHTEEECTTSCEEECCHHHHHHHHHHHHHTCSEEEE
T ss_pred             HHHHHHCCCEEEECCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCEEEE
T ss_conf             99998586567741542056776652035676799530003642124663135543001100149999998630567650


Q ss_pred             CCHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             440440113763330233210003325565777653310166
Q gi|254780653|r  146 DAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLESCFSES  187 (400)
Q Consensus       146 DAF~~aHR~haS~~gi~~~lps~aG~l~ekEi~~L~~~l~~~  187 (400)
                      ||||+|||+|||++||+ ++|+|||++||+|+++|++++++|
T Consensus       160 DAF~~aHR~haS~~gi~-~~~~~aG~l~ekEi~~L~~~l~~P  200 (200)
T 1hdi_A          160 DAFGTAHRAHSSMVGVN-LPKKAGAFLMKKELNYFAAAAESP  200 (200)
T ss_dssp             CCGGGTTCCCHHHHCCC-CSCEEECHHHHHHHHHHHHHHTSC
T ss_pred             CCCHHHHCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             54004311450101101-343024779999999987763379


No 18 
>>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A {Escherichia coli} (A:182-373)
Probab=100.00  E-value=0  Score=461.52  Aligned_cols=192  Identities=46%  Similarity=0.782  Sum_probs=186.3

Q ss_pred             CCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             78718999607802557889987730688886205789999983014343333100001356889987530245543035
Q gi|254780653|r  188 KKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRD  267 (400)
Q Consensus       188 ~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D  267 (400)
                      .||+++||||||+||||++|++|++|||+|++||+||||||+|+|++||+|++|++.++.|+++++++     +|++|+|
T Consensus         1 aRP~vaIlGGaKvsdKi~~l~~ll~kvD~iligG~ma~~Fl~a~G~~ig~s~~e~~~~~~a~~ll~~~-----~i~lp~d   75 (192)
T 1zmr_A            1 ARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIANTFIAAQGHDVGKSLYEADLVDEAKRLLTTC-----NIPVPSD   75 (192)
T ss_dssp             SSSEEEEEEESCTTTTHHHHHHHHTTCSEEEEEEHHHHHHHHHTTCCCTTCSCCGGGHHHHHHHHTTS-----CCCCCSE
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC-----CCCCCCC
T ss_conf             99879998231265678999988740444786316899999981981387520101567899876402-----7651332


Q ss_pred             EECCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf             41134323233331025321201334576520035677764057767999766253227436588999999998611148
Q gi|254780653|r  268 VVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKER  347 (400)
Q Consensus       268 ~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~~~  347 (400)
                      ++|+++++.+.++++++.+++|++|+++||||+|++.|+++|++|+|||||||||+||+++|+.||.+++++++    ++
T Consensus        76 ~~va~~~~~~~~~~~~~~~~i~~~~~~~DIGp~Ti~~~~~~i~~akti~wNGP~GvfE~~~F~~GT~~i~~a~a----~~  151 (192)
T 1zmr_A           76 VRVATEFSETAPATLKSVNDVKADEQILDIGDASAQELAEILKNAKTILWNGPVGVFEFPNFRKGTEIVANAIA----DS  151 (192)
T ss_dssp             EEEESSSSSSCCCEEEEGGGCCTTCEEEEECHHHHHHHHHHHHHCSEEEEESCSBCTTSGGGCHHHHHHHHHHH----HS
T ss_pred             EECCCCCCCCCCCEEEECCCCCCCCEEEEEHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH----HC
T ss_conf             66122234688735962422456760255002445789987505657999533454256625389999999998----68


Q ss_pred             CCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCC
Q ss_conf             85899748046998998488768646875079989987489
Q gi|254780653|r  348 RIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGK  388 (400)
Q Consensus       348 ~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~~L~G~  388 (400)
                      +++||+|||||++|++++|+.++|+||||||||+|+|||||
T Consensus       152 ~~~sviGGGdt~~a~~~~gl~d~~shvSTgGGA~L~~LeGk  192 (192)
T 1zmr_A          152 EAFSIAGGGDTLAAIDLFGIADKISYISTGGGAFLEFVEGK  192 (192)
T ss_dssp             SSEEEECSHHHHHHHHHHTCGGGSSEECCCTHHHHHHHTTC
T ss_pred             CCEEEECCHHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCC
T ss_conf             99899968899999998098578818977789999998799


No 19 
>>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000, riken structural genomics/proteomics initiative, RSGI, NPPSFA; HET: 3PG; 2.10A {Pyrococcus horikoshii OT3} (A:189-390)
Probab=100.00  E-value=0  Score=461.64  Aligned_cols=196  Identities=29%  Similarity=0.462  Sum_probs=184.9

Q ss_pred             CCCEEEEEEECCHHHHHHHHHHHHH--CCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCHHHH----HHHHHHHHCCCC
Q ss_conf             7871899960780255788998773--0688886205789999983014343333100001356----889987530245
Q gi|254780653|r  188 KKPLVAIVGGSKVSTKITLLINLVK--KVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNVH----QIAWEAKRSACE  261 (400)
Q Consensus       188 ~~P~v~IiGGaKisdKi~~i~~L~~--k~D~iiigG~lantfL~A~G~~IG~Sl~e~~~~~~ak----~i~~~a~~~~~~  261 (400)
                      +||+++||||||+||||++|++|++  +||+|++||+||||||+|+|++||+|++|++..+.++    ++.+.+++++++
T Consensus         1 erP~vaIlGGaKvsdKi~vl~~Ll~~~kvD~iiigG~ma~~Fl~a~G~~ig~sl~e~~~~~~~~~~i~~~~~~~~~~~~~   80 (202)
T 2cun_A            1 DSPKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANVFTLAKGFDLGRKNVEFMKKKGLLDYVKHAEEILDEFYPY   80 (202)
T ss_dssp             CSCEEEEECSSCHHHHHHHHHHHHHTTSCSEEEECHHHHHHHHHHHTCCCCHHHHHHHHTTTGGGGHHHHHHHHHHHGGG
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHCCCCCCCCCC
T ss_conf             77659997456310168999987500246189972442022555432114532110455521454300000123234541


Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             54303541134323233331025321201334576520035677764057767999766253227436588999999998
Q gi|254780653|r  262 IIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVA  341 (400)
Q Consensus       262 I~lP~D~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia  341 (400)
                      |++|+||+|+++++...+..+++.++||++|+++||||+|++.|+++|++|+|||||||||+||+++|+.||.+++++++
T Consensus        81 i~lP~D~~~~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~aktI~wNGP~GvfE~~~F~~GT~~i~~aia  160 (202)
T 2cun_A           81 IRTPVDFAVDYKGERVEIDLLSENRGLLHQYQIMDIGKRTAEKYREILMKARIIVANGPMGVFEREEFAIGTVEVFKAIA  160 (202)
T ss_dssp             EECCSEEEEEETTEEEEEESSSGGGGGGGTSCEEEECHHHHHHHHHHHHTCSEEEEESCSSCTTSGGGCHHHHHHHHHHH
T ss_pred             EEECCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             33212111211134555331103434445565777126666665456612998999664345565406499999999998


Q ss_pred             HHHCCCCCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCC
Q ss_conf             61114885899748046998998488768646875079989987489
Q gi|254780653|r  342 KLTKERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGK  388 (400)
Q Consensus       342 ~~~~~~~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~~L~G~  388 (400)
                          +++++||+|||||++|++++|+.+ |+||||||||+|+|||||
T Consensus       161 ----~~~a~sivGGGdt~~a~~~~g~~~-~shvSTgGGA~Le~LeGk  202 (202)
T 2cun_A          161 ----DSPAFSVLGGGHSIASIQKYGITG-ITHISTGGGAMLSFFAGE  202 (202)
T ss_dssp             ----HSSSEEEEECGGGGGGGGGSCCCC-CSEECSCSHHHHHHHTTC
T ss_pred             ----HCCCEEEECCHHHHHHHHHCCCCC-CCEEECCHHHHHHHHCCC
T ss_conf             ----289989995769999999749988-815956779999998799


No 20 
>>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycolysis, mutant, permutation, permuted sequence, protein folding; 2.30A {Saccharomyces cerevisiae} (A:1-131,A:347-416)
Probab=100.00  E-value=5.6e-43  Score=297.25  Aligned_cols=118  Identities=35%  Similarity=0.579  Sum_probs=113.7

Q ss_pred             CCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCC--------------CCHHHHHHHHC
Q ss_conf             3224788887643101335456663102556655313646489824243034321--------------00024665312
Q gi|254780653|r   72 DCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEE--------------RNDPDFVRMLS  137 (400)
Q Consensus        72 ~~Sl~~v~~~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~--------------~n~~~f~k~La  137 (400)
                      ++||+||+++|+++||++|.|++||+|+.++++++.|++|+|+||||+|||+||+              +|+++|+++||
T Consensus         2 ~~SL~~va~~L~~~Lg~~V~f~~d~~g~~~~~~i~~l~~GeilLLENvRF~~eE~~~~~~~~~~~~~e~~~~~~fa~~LA   81 (200)
T 1fw8_A            2 KYSLAPVAKELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENLRYHIEEEGSRKVDGQKVKASKEDVQKFRHELS   81 (200)
T ss_dssp             TTCSHHHHHHHHHHHTSCEEECSCSSSHHHHHHHHTSCTTEEEECCCGGGSHHHHSEEEETTEEEECCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHH
T ss_conf             30569999999999789838568778878999997079997899852688812013654320000221012599999988


Q ss_pred             CCCCEEEECCHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf             43642475440440113763330233210003325565777653310166787
Q gi|254780653|r  138 RNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLESCFSESKKP  190 (400)
Q Consensus       138 ~laDiyVnDAF~~aHR~haS~~gi~~~lps~aG~l~ekEi~~L~~~l~~~~~P  190 (400)
                      +++|+|||||||||||+|||++||+ ++|+|||+|||+|+++|++++++|+.+
T Consensus        82 ~l~DvyVnDAFg~aHR~haS~~gi~-~~~~~aG~LmekEi~~L~~~~~~p~m~  133 (200)
T 1fw8_A           82 SLADVYINDAFGTAHRAHSSMVGFD-LPQRAAGFLLEKELKYFGKALENPTSS  133 (200)
T ss_dssp             TTCSEEEECCGGGTTSCCHHHHCCC-CSCEEECHHHHHHHHHHHHHHHSCSSC
T ss_pred             HHCCEEEECCCCHHCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHCCCHHH
T ss_conf             5488998743000112344443424-675655267899999999986378331


No 21 
>>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycolysis, mutant, permutation, permuted sequence, protein folding; 2.30A {Saccharomyces cerevisiae} (A:1-131,A:347-416)
Probab=99.94  E-value=1.8e-27  Score=197.21  Aligned_cols=68  Identities=38%  Similarity=0.652  Sum_probs=64.1

Q ss_pred             CCCCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCE-EEEEECCCCCCCCCC
Q ss_conf             888771010015996899982016713185777258999988989999988980-999913778889847
Q gi|254780653|r    2 SRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAK-VVIFSHLGRPQSKSD   70 (400)
Q Consensus         2 ~~~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~ak-vii~SH~GRPkg~~~   70 (400)
                      |.++||+|+ |++||+||||||||||+++|+|+|++||++++|||++|+++||| |||+||||||||+.|
T Consensus       132 m~~~ti~d~-d~~gK~VlvRvD~NvPi~~g~I~Dd~RI~a~lpTI~~ll~~gak~vIL~SHlGRPkgk~d  200 (200)
T 1fw8_A          132 SSKLSVQDL-DLKDKRVFIRVDFNVPLDGKKITSNQRIVAALPTIKYVLEHHPRYVVLASHLGRPNGERN  200 (200)
T ss_dssp             SCSCBGGGS-CCTTCEEEEECCCCCCBSSSSBSCTHHHHHHHHHHHHHHHTCCSEEEEECCCSCCCSSCC
T ss_pred             HHCCCCCCC-CCCCCEEEEEEECCCCCCCCCCCCHHHHHHHCCHHHHHHHCCCCEEEEHHHCCCCCCCCC
T ss_conf             313010232-346847999985267666010430677875231579998559828986864389987889


No 22 
>>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution; 1.04A {Bos taurus} (A:1-41,A:233-288,A:396-433)
Probab=74.93  E-value=5.2  Score=20.04  Aligned_cols=119  Identities=12%  Similarity=0.085  Sum_probs=66.0

Q ss_pred             HHHCCCEEEECHHHHHHHH----HHHCCCCCCCCCCCCC---CHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf             7730688886205789999----9830143433331000---01356889987530245543035411343232333310
Q gi|254780653|r  210 LVKKVDKLVIGGGMANSFL----VAQGMGVGRSLCQRDF---SDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQV  282 (400)
Q Consensus       210 L~~k~D~iiigG~lantfL----~A~G~~IG~Sl~e~~~---~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~~~  282 (400)
                      |-++.+-++||||.+-.+.    .-.|+++  .++|...   -+.+..+.+.++++|.+|++-..+.--..-+.......
T Consensus         3 ~~~~~~vvviG~G~~g~~~a~~l~~~g~~v--~~ie~~~~~d~~l~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~~~v~~   80 (135)
T 1d5t_A            3 MDEEYDVIVLGTGLTECILSGIMSVNGKKV--LHMDRNPYYLGELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVK   80 (135)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCE--EEECSSSSSTTHHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEE
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCE--EEECCCCCCHHHHHHHHHHHHHHCCCEEECCCCEEEEEEECCEEEEEE
T ss_conf             998768899895989999999999889979--998899999689999999999852690984893479999899999999


Q ss_pred             CCCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCC-CHHHHHHHHHHHHH
Q ss_conf             253212013345765200356777640577679997662532274-36588999999998
Q gi|254780653|r  283 VSAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIE-PFDRATVEVAHYVA  341 (400)
Q Consensus       283 ~~~~~i~~~~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~GvfE~~-~F~~GT~~l~~~ia  341 (400)
                      .+-+.++.+..++-+|..+.           ...|-.+....+.. .++.+..-+.-.+.
T Consensus        81 ~dG~~i~aD~VI~a~G~~~~-----------~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  129 (135)
T 1d5t_A           81 SEGEVARCKQLICDPSYSES-----------QVFCSCSYDATTHFETTCNDIKDIYKRMA  129 (135)
T ss_dssp             ETTEEEECSEEEECGGGTTT-----------CEEECCCCCSCSBSHHHHHHHHHHHHHHH
T ss_pred             ECCEEEECCEEEECCCCCCC-----------CEEECCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             59989994989999000888-----------88977898865577899999999999853


No 23 
>>1xpj_A Hypothetical protein; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics, unknown function; HET: TLA; 2.30A {Vibrio cholerae} (A:)
Probab=71.91  E-value=6.8  Score=19.33  Aligned_cols=29  Identities=14%  Similarity=0.024  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf             89999889899999889809999137788
Q gi|254780653|r   37 TRIERVVPTILELVEKKAKVVIFSHLGRP   65 (400)
Q Consensus        37 ~RI~~~~pTI~~l~~~~akvii~SH~GRP   65 (400)
                      .=+..+..+|+.+.++|.++|+.|.|+..
T Consensus        24 ~~~p~v~e~l~~l~~~G~~ivi~Tnq~~~   52 (126)
T 1xpj_A           24 LPRLDVIEQLREYHQLGFEIVISTARNMR   52 (126)
T ss_dssp             CBCHHHHHHHHHHHHTTCEEEEEECTTTT
T ss_pred             CCCHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             85799999999999789999999566532


No 24 
>>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} (A:1-108)
Probab=65.66  E-value=7.5  Score=19.05  Aligned_cols=44  Identities=18%  Similarity=0.266  Sum_probs=33.1

Q ss_pred             CCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             87710100159968999820167131857772589999889899999889809999137
Q gi|254780653|r    4 LRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHL   62 (400)
Q Consensus         4 ~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~   62 (400)
                      |+++.=+.|++||+|+|       +-.|++        ...+.+.|.+.|++++++.--
T Consensus         1 M~~~p~~~~l~gk~vlV-------iG~G~i--------G~~~a~~L~~~G~~v~vi~~~   44 (108)
T 1pjq_A            1 MDHLPIFCQLRDRDCLI-------VGGGDV--------AERKARLLLEAGARLTVNALT   44 (108)
T ss_dssp             CCCEEEEECCBTCEEEE-------ECCSHH--------HHHHHHHHHHTTBEEEEEESS
T ss_pred             CCCCCCEEECCCCEEEE-------ECCCHH--------HHHHHHHHHHCCCEEEEECCC
T ss_conf             98016168838983999-------889899--------999999998689879999389


No 25 
>>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} (A:1-145)
Probab=64.44  E-value=5.9  Score=19.71  Aligned_cols=39  Identities=21%  Similarity=0.251  Sum_probs=30.7

Q ss_pred             HHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             001599689998201671318577725899998898999998898099991377
Q gi|254780653|r   10 LRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLG   63 (400)
Q Consensus        10 ~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~G   63 (400)
                      +.|++||+|||       +..|++        +.-.++.|++.||+|.++|..-
T Consensus         8 ~l~l~~k~VLV-------iGgG~v--------A~rk~~~ll~~ga~v~vva~~~   46 (145)
T 1kyq_A            8 AHQLKDKRILL-------IGGGEV--------GLTRLYKLXPTGCKLTLVSPDL   46 (145)
T ss_dssp             EECCTTCEEEE-------EEESHH--------HHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CEEECCCEEEE-------ECCCHH--------HHHHHHHHHHCCCEEEEEECCC
T ss_conf             16818986999-------899899--------9999999997899699990898


No 26 
>>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} (A:311-451)
Probab=62.85  E-value=11  Score=18.01  Aligned_cols=45  Identities=20%  Similarity=0.256  Sum_probs=36.1

Q ss_pred             CCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHH
Q ss_conf             678718999607802557889987730688886205789999983
Q gi|254780653|r  187 SKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQ  231 (400)
Q Consensus       187 ~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~  231 (400)
                      +.++.++|+||-+=.+....+.+....++.+++.|.-......+.
T Consensus        35 ~~~~~i~V~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   79 (141)
T 3lk7_A           35 DNTKVILIAGGLDRGNEFDELIPDITGLKHXVVLGESASRVKRAA   79 (141)
T ss_dssp             CGGGEEEEECCSCCSCCCGGGHHHHTTCSEEEECSTTHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHH
T ss_conf             788716964774556659999999867988999799989999999


No 27 
>>1ig3_A Thiamin pyrophosphokinase; beta barrel, alpha/beta/alpha sandwich, transferase; HET: VIB; 1.90A {Mus musculus} (A:)
Probab=61.67  E-value=11  Score=17.87  Aligned_cols=140  Identities=19%  Similarity=0.219  Sum_probs=74.2

Q ss_pred             HHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHH
Q ss_conf             44011376333023321000332556577765331016678718999607802557889987730688886205789999
Q gi|254780653|r  149 SVSHRAHASITGLSHLLPSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFL  228 (400)
Q Consensus       149 ~~aHR~haS~~gi~~~lps~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL  228 (400)
                      +-.||.|+|--+-.     --|..|++++..+.-...+...+.++|++|..+++.   ...+..+.|.++-.=+=|+-.+
T Consensus         2 ~~~~~~~~~~~~~~-----~~~~~m~~~~~~~~~l~~~~~~~~~~Iv~ng~~~~~---~~~~~~~~~~~I~aDgGa~~l~   73 (263)
T 1ig3_A            2 GSSHHHHHHSSGLV-----PRGSHMEHAFTPLEPLLPTGNLKYCLVVLNQPLDAR---FRHLWKKALLRACADGGANHLY   73 (263)
T ss_dssp             --------CCCSSC-----CCSCCCCEEECTTGGGSSSCCCCEEEEECSSCCCTT---HHHHHHHCSEEEEETTHHHHHH
T ss_pred             CCCCCCCCCCCCCC-----CCCCCHHHHCCCHHCCCCCCCCCEEEEEECCCCHHH---HHHHHHHCCEEEEEECHHHHHH
T ss_conf             86554433355756-----477426552780111788887656999978981799---9999965889999828899998


Q ss_pred             HH-----HCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHH
Q ss_conf             98-----3014343333100001356889987530245543035411343232333310253212013345765200356
Q gi|254780653|r  229 VA-----QGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVE  303 (400)
Q Consensus       229 ~A-----~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~Ti~  303 (400)
                      ..     .|+.-  .++=-|+...-.+..+.++.++..++.|-|=                  +-.      | ..+.++
T Consensus        74 ~~~~~~~~gi~P--d~iiGDfDSi~~~~~~~~~~~~~~~~~~p~k------------------D~T------D-~e~Al~  126 (263)
T 1ig3_A           74 DLTEGERESFLP--EFVSGDFDSIRPEVKEYYTKKGCDLISTPDQ------------------DHT------D-FTKCLQ  126 (263)
T ss_dssp             HTCTTCGGGCCC--SEEEECTTSSCHHHHHHHHHTTCEEEECCCT------------------TSC------H-HHHHHH
T ss_pred             HHHCCCCCCCCC--CEEECCCCCCCHHHHHHHHHCCCEEEECCCC------------------CCC------H-HHHHHH
T ss_conf             740121238888--9898747899979999987569738889766------------------768------7-999999


Q ss_pred             HHHH----HHCCCCEEEEECCCCC
Q ss_conf             7776----4057767999766253
Q gi|254780653|r  304 YIKQ----VIAQARTVMWNGPLGV  323 (400)
Q Consensus       304 ~~~~----~I~~AktI~WNGP~Gv  323 (400)
                      ...+    .=.++..|+.-|-+|-
T Consensus       127 ~~~~~~~~~~~~~~~i~i~Ga~Gg  150 (263)
T 1ig3_A          127 VLQRKIEEKELQVDVIVTLGGLGG  150 (263)
T ss_dssp             HHHHHHHHTTCCCSEEEEECCSSS
T ss_pred             HHHHHHHHHCCCCCEEEEEECCCC
T ss_conf             998742321269876999955889


No 28 
>>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} (A:1-198,A:241-325)
Probab=60.32  E-value=6.5  Score=19.42  Aligned_cols=91  Identities=12%  Similarity=0.207  Sum_probs=54.1

Q ss_pred             HHHCCCCC-EEEECCHHHHCCCCCCEEECCCCCCC---CCCHHH----HHHHHHHHH-----------------------
Q ss_conf             53124364-24754404401137633302332100---033255----657776533-----------------------
Q gi|254780653|r  134 RMLSRNGD-FYINDAFSVSHRAHASITGLSHLLPS---YIGRAM----QKELSMLES-----------------------  182 (400)
Q Consensus       134 k~La~laD-iyVnDAF~~aHR~haS~~gi~~~lps---~aG~l~----ekEi~~L~~-----------------------  182 (400)
                      .+..+-.| +||-|+|..+++.|.--+-+-.-.+.   ++=.++    .+|++....                       
T Consensus        81 ~~yl~~~d~lyV~D~~vGaD~~~rlkvRvite~Aw~aLF~~nlfirP~~eel~~f~ePdftI~~aP~~~adp~~~Gl~Se  160 (283)
T 1ii2_A           81 KEFLDTREHLFVVDCFAGHDERYRLKVRVFTTRPYHALFMRDMLIVPTPEELATFGEPDYVIYNAGECKADPSIPGLTST  160 (283)
T ss_dssp             HHHHHTSSEEEEEEEEECSSTTTCEEEEEEESSHHHHHHHHHHSBCCCHHHHHTCCSCSEEEEEETTSCCCTTSTTCCSS
T ss_pred             HHHHHCCCCEEEEEEEEECCHHHCEEEEEEECHHHHHHHHHHHCCCCCHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCC
T ss_conf             99984178689998776468312301799971454889987334899857852357987699537663451000578887


Q ss_pred             --HCCCCCCCEEEEEEECCHHH-----HHHHHHHHHH-CCCEEEECHHHHH
Q ss_conf             --10166787189996078025-----5788998773-0688886205789
Q gi|254780653|r  183 --CFSESKKPLVAIVGGSKVST-----KITLLINLVK-KVDKLVIGGGMAN  225 (400)
Q Consensus       183 --~l~~~~~P~v~IiGGaKisd-----Ki~~i~~L~~-k~D~iiigG~lan  225 (400)
                        ++-+.++ .+++|||.-..-     -+.++..|+. +.+++.-.|++.|
T Consensus       161 ~fiiin~~~-~~~lI~Gt~YaGEiKKgiFTvmNylLP~r~e~~~~d~~v~~  210 (283)
T 1ii2_A          161 TCVALNFKT-REQVILGTEYAGEMKKGILTVMFELMPQMDEHVWTDRGVFN  210 (283)
T ss_dssp             CEEEEETTT-TEEEEESCCCTHHHHHHHHHHHHHHHHHTSCEEECSSCEEE
T ss_pred             CEEEEECCC-CEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCEEE
T ss_conf             379998025-98999675467788999999974441435661365886685


No 29 
>>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} (B:)
Probab=57.38  E-value=8.7  Score=18.62  Aligned_cols=103  Identities=10%  Similarity=0.096  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHC-CCEE-EECHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf             556577765331016678718999607802557889987730-6888-86205789999983014343333100001356
Q gi|254780653|r  172 AMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKK-VDKL-VIGGGMANSFLVAQGMGVGRSLCQRDFSDNVH  249 (400)
Q Consensus       172 l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k-~D~i-iigG~lantfL~A~G~~IG~Sl~e~~~~~~ak  249 (400)
                      -.++|++.+..+++.-+.|+. +++++--+.+-.+++..++. +|.+ +|.|.                     ..+..+
T Consensus       106 ~~~~~~~~i~~v~~~i~~~~~-~~~~siDt~~~ev~~~aL~~g~d~~~~Ins~---------------------~~~~~~  163 (310)
T 2h9a_B          106 SGAELAEVCKAVADAIDVPLM-IIGCGVEEKDAEIFPVIGEALSGRNCLLSSA---------------------TKDNYK  163 (310)
T ss_dssp             CHHHHHHHHHHHHHHCSSCEE-EECCSCHHHHHHHHHHHHHHTTTSCCEEEEE---------------------CTTTHH
T ss_pred             CHHHHHHHHHHHHHHCCCCEE-EECCCCCCHHHHHHHHHHHHHCHHCCCCCCC---------------------CCCCHH
T ss_conf             999999999999986589836-7326644110999999999734004660013---------------------522458


Q ss_pred             HHHHHHHHCCCCCCC-EEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCH
Q ss_conf             889987530245543-035411343232333310253212013345765200
Q gi|254780653|r  250 QIAWEAKRSACEIIV-PRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFK  300 (400)
Q Consensus       250 ~i~~~a~~~~~~I~l-P~D~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~  300 (400)
                      .+.+.++++++..++ ..|-.-.    ............++.++.++|.|..
T Consensus       164 ~~~~la~~~~~~vVv~~~~~~~~----~~~~~~~~~~~~i~~~~ivlDpg~~  211 (310)
T 2h9a_B          164 PIVATCMVHGHSVVASAPLDINL----SKQLNIMIMEMNLAPNRIIMDPLIG  211 (310)
T ss_dssp             HHHHHHHHHTCEEEEECSSCHHH----HHHHHHHHHTTTCCGGGEEEECCCC
T ss_pred             HHHHHHHHHCCCEEEECCCHHHH----HHHHHHHHHHCCCCHHHEEEECCCC
T ss_conf             99999998199899988646889----9999999998699977889815765


No 30 
>>2yzs_A Putative uncharacterized protein; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; 2.00A {Aquifex aeolicus} (A:1-79)
Probab=53.17  E-value=1.4  Score=23.80  Aligned_cols=60  Identities=10%  Similarity=0.005  Sum_probs=40.1

Q ss_pred             CCCEEEEEEE---CCCCCCC-CEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC
Q ss_conf             9968999820---1671318-5777258999988989999988980999913778889847332
Q gi|254780653|r   14 RGLRCLLRVD---WNVPFID-GKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDC   73 (400)
Q Consensus        14 ~gk~VlvRvD---~NvPi~~-g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~   73 (400)
                      ++.++.++-+   .-+|+.+ ..|.=..++.-+-+-+..|+++|..++.+|+-|||.|...+..
T Consensus        15 ~~~~l~v~~~~~~~~iPl~~i~~Ivi~g~v~ist~~l~~l~~~gI~v~f~s~~G~~~G~l~p~~   78 (79)
T 2yzs_A           15 HENTLRFENAEVKKDIPVEDVEEIFVFAELSLNTKLLNFLASKGIPLHFFNYYGYYTGTFYPRE   78 (79)
T ss_dssp             ETTEEEEECSSCEEEECGGGCSEEEECSCEEEEHHHHHHHHHHTCCEEEECTTSCEEEEEEECC
T ss_pred             ECCEEEEEECCEEEEECHHHCCEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEECCCC
T ss_conf             7899999978989997358868899958970679999999987997999999997858845865


No 31 
>>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} (B:1-125)
Probab=50.01  E-value=16  Score=16.85  Aligned_cols=49  Identities=8%  Similarity=0.120  Sum_probs=29.9

Q ss_pred             CCCCCHH-------HHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf             7652003-------5677764057767999766253227436588999999998611148
Q gi|254780653|r  295 LDVGFKT-------VEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKER  347 (400)
Q Consensus       295 ~DIGp~T-------i~~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~~~  347 (400)
                      +--|.+.       +........+++.+++--|...-..    .+...+.+++.+..+..
T Consensus        58 LSGGek~~~~la~rlala~~l~~~~~~lilDEPT~~LD~----~~~~~l~~~l~~~~~~~  113 (125)
T 1f2t_B           58 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDE----ERRRKLITIMERYLKKI  113 (125)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCH----HHHHHHHHHHHHTGGGS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCH----HHHHHHHHHHHHHHHCC
T ss_conf             878887247888999999997069998997188665899----99999999999999669


No 32 
>>1ii8_B RAD50 ABC-ATPase; MRE11, DNA double-strand break repair, replication; 3.02A {Pyrococcus furiosus} (B:1-151)
Probab=46.89  E-value=18  Score=16.60  Aligned_cols=41  Identities=5%  Similarity=0.098  Sum_probs=27.2

Q ss_pred             HHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             764057767999766253227436588999999998611148858
Q gi|254780653|r  306 KQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRII  350 (400)
Q Consensus       306 ~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~~~~~~  350 (400)
                      .-...++..+|+--|....-.    .....+++.+.+..+....+
T Consensus       102 ~~l~~~~~~liLDEPt~~LD~----~~~~~l~~~l~~l~~~~~~v  142 (151)
T 1ii8_B          102 LYLAGEISLLILDEPTPYLDE----ERRRKLITIMERYLKKIPQV  142 (151)
T ss_dssp             HHHHSSCSEEEEECCSSSSCS----HHHHHHHHHHHHTGGGSSEE
T ss_pred             HHHCCCCCEEEECCCCCCCCH----HHHHHHHHHHHHHHHCCCEE
T ss_conf             985669988996487566898----99999999999999669989


No 33 
>>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} (A:249-271,A:543-734)
Probab=44.90  E-value=9.6  Score=18.35  Aligned_cols=23  Identities=9%  Similarity=0.174  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf             56577765331016678718999
Q gi|254780653|r  173 MQKELSMLESCFSESKKPLVAIV  195 (400)
Q Consensus       173 ~ekEi~~L~~~l~~~~~P~v~Ii  195 (400)
                      +..|+..+..++.......++++
T Consensus       120 F~~El~~i~~il~~~~~~sLvli  142 (215)
T 1ewq_A          120 FXVEXEEVALILKEATENSLVLL  142 (215)
T ss_dssp             HHHHHHHHHHHHHHCCTTEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             99999999999985899818999


No 34 
>>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 2q6u_A* (A:1-41,A:153-211,A:330-397)
Probab=44.36  E-value=21  Score=16.10  Aligned_cols=95  Identities=15%  Similarity=0.114  Sum_probs=58.3

Q ss_pred             HHHCCCEEEECHHHHHHHHHHHCCCCC--CCCCCCC-CC---HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf             773068888620578999998301434--3333100-00---13568899875302455430354113432323333102
Q gi|254780653|r  210 LVKKVDKLVIGGGMANSFLVAQGMGVG--RSLCQRD-FS---DNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVV  283 (400)
Q Consensus       210 L~~k~D~iiigG~lantfL~A~G~~IG--~Sl~e~~-~~---~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~~~~  283 (400)
                      |.++.|-++||||.+-.-+...--+.|  -.++|.. ..   +.+..+.+.+++.|.+|..-.-+.--. .+.+.-....
T Consensus         1 m~~~~~~~vig~g~~g~~~a~~~~~~g~~v~~~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~-~~~~~~~v~t   79 (168)
T 2oln_A            1 MTESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNERGTLAALFTLAQAAGATLRAGETVTELV-PDADGVSVTT   79 (168)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTCSHHHHHHHHHHHHHTTCEEEESCCEEEEE-EETTEEEEEE
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCCEEEEEECCCCC-CCCCCCEECC
T ss_conf             998787899896899999999999889968999089988764332210011013432124443012320-0378630004


Q ss_pred             CCCEECCCCCCCCCCCHHHHHH
Q ss_conf             5321201334576520035677
Q gi|254780653|r  284 SAQSVPLDSIILDVGFKTVEYI  305 (400)
Q Consensus       284 ~~~~i~~~~~i~DIGp~Ti~~~  305 (400)
                      +-..++.+..++=.|..+-...
T Consensus        80 ~~g~i~a~~vV~aaG~~~~~l~  101 (168)
T 2oln_A           80 DRGTYRAGKVVLACGPYTNDLE  101 (168)
T ss_dssp             SSCEEEEEEEEECCGGGHHHHT
T ss_pred             CCCEEECCEEEEECCCCHHHHC
T ss_conf             5873603769996782678779


No 35 
>>1aoe_A DHFR, dihydrofolate reductase; oxidoreductase, antifungal target; HET: NDP GW3; 1.60A {Candida albicans} (A:)
Probab=43.74  E-value=4.8  Score=20.29  Aligned_cols=23  Identities=35%  Similarity=0.663  Sum_probs=11.7

Q ss_pred             EEEEEEECCHHHHHHHHHHHHHC--CCEEEE
Q ss_conf             18999607802557889987730--688886
Q gi|254780653|r  191 LVAIVGGSKVSTKITLLINLVKK--VDKLVI  219 (400)
Q Consensus       191 ~v~IiGGaKisdKi~~i~~L~~k--~D~iii  219 (400)
                      -+.|+||+.+      ...+++.  +|.+.+
T Consensus       108 ~i~viGG~~i------~~~~l~~~LvDei~l  132 (192)
T 1aoe_A          108 RVFIIGGAEI------YNELINNSLVSHLLI  132 (192)
T ss_dssp             EEEECCCHHH------HHHHTTSTTEEEEEE
T ss_pred             EEEEECCHHH------HHHHHHCCCCCEEEE
T ss_conf             3899564589------999742304899999


No 36 
>>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A (A:1-94,A:179-249)
Probab=42.84  E-value=8.5  Score=18.69  Aligned_cols=47  Identities=17%  Similarity=0.104  Sum_probs=35.2

Q ss_pred             CCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             1857772589999889899999889809999137788898473322478888764
Q gi|254780653|r   29 IDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIAE   83 (400)
Q Consensus        29 ~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l~   83 (400)
                      .||+++++.--.....+|+.|.++|.++++.|  |||      ..++.+..+.+.
T Consensus         9 lDGTLl~~~i~~~~~~al~~l~~~G~~~~iaT--GR~------~~~~~~~~~~l~   55 (165)
T 2zos_A            9 IDKTLIPGYEPDPAKPIIEELKDXGFEIIFNS--SKT------RAEQEYYRKELE   55 (165)
T ss_dssp             CSTTTCTTSCSGGGHHHHHHHHHTTEEEEEBC--SSC------HHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEC--CCC------HHHHHHHHHHHC
T ss_conf             78767799988899999999998899999991--898------899999999734


No 37 
>>2w9h_A DHFR, dihydrofolate reductase; NADP, trimethoprim, oxidoreductase, one-carbon metabolism; HET: TOP; 1.48A {Staphylococcus aureus} PDB: 2w9g_A* 3fyw_X* 3fyv_X* 3fy8_X* 3fy9_X* 3fq0_A* 3f0b_X* 3fqc_A* 3fqz_A* 3f0u_X* 3fqf_A* 3fqo_A* 3fqv_A* 2w9s_A* 2w9t_A (A:)
Probab=41.88  E-value=22  Score=16.07  Aligned_cols=34  Identities=29%  Similarity=0.497  Sum_probs=24.4

Q ss_pred             HHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECH
Q ss_conf             533101667871899960780255788998773068888620
Q gi|254780653|r  180 LESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGG  221 (400)
Q Consensus       180 L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG  221 (400)
                      +..+++..+.  +.|+||++      +.+.+++.+|.+++.=
T Consensus        80 ~~~~l~~~~~--i~viGG~~------i~~~~l~~~d~l~it~  113 (159)
T 2w9h_A           80 IEDIYQLPGH--VFIFGGQT------LFEEMIDKVDDMYITV  113 (159)
T ss_dssp             GGGGGGSCSC--EEEEECHH------HHHHHTTTCSEEEEEE
T ss_pred             HHHHHHCCCC--EEEECCHH------HHHHHHHHCCEEEEEE
T ss_conf             9998620222--04674478------9998775437899998


No 38 
>>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus HB8} (A:1-209,A:253-338)
Probab=40.24  E-value=10  Score=18.16  Aligned_cols=93  Identities=15%  Similarity=0.160  Sum_probs=54.4

Q ss_pred             HHHHHCCCCCEEEECCHHHHCCCCCCEEECCCCCCC---CCCHHH--------HHHHHHHH-------------------
Q ss_conf             665312436424754404401137633302332100---033255--------65777653-------------------
Q gi|254780653|r  132 FVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLPS---YIGRAM--------QKELSMLE-------------------  181 (400)
Q Consensus       132 f~k~La~laDiyVnDAF~~aHR~haS~~gi~~~lps---~aG~l~--------ekEi~~L~-------------------  181 (400)
                      -+....+--|+||.|+|..+|+++.--+-+..-.+.   ++=.++        ++|+....                   
T Consensus        89 ~~~~~l~~kdlyv~D~~vGaDp~~rl~vRvItE~Aw~~LF~~nLfirP~~~~~~eel~~~~PdftIi~~P~~~adp~~dG  168 (295)
T 1j3b_A           89 RVVQYLSERDLYVQDLYAGADRRYRLAVRVVTESPWHALFARNMFILPRRFGNDDEVEAFVPGFTVVHAPYFQAVPERDG  168 (295)
T ss_dssp             HHHHHHHTSCEEEEEEEECSSTTTCEEEEEEESCHHHHHHHHHHSBCGGGGC------CCCCSEEEEEETTCCCCHHHHC
T ss_pred             HHHHHHHCCCEEEEEEEEECCHHHCEEEEEEEHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCEEEEECCCCCCCCCCCC
T ss_conf             99999836976998657861730121289973267799999851678754553234532488718985566757845457


Q ss_pred             -----HHCCCCCCCEEEEEEECCHHH-----HHHHHHHHHHCCCEEEECHHHHH
Q ss_conf             -----310166787189996078025-----57889987730688886205789
Q gi|254780653|r  182 -----SCFSESKKPLVAIVGGSKVST-----KITLLINLVKKVDKLVIGGGMAN  225 (400)
Q Consensus       182 -----~~l~~~~~P~v~IiGGaKisd-----Ki~~i~~L~~k~D~iiigG~lan  225 (400)
                           -++-++++ .+++|||.-..-     -+.++..|+.+-.+++-.|++.|
T Consensus       169 l~Setfiiin~~~-k~~lI~GT~YaGEiKKsiFTvmnyllPr~e~~~~~~~v~~  221 (295)
T 1j3b_A          169 TRSEVFVGISFQR-RLVLIVGTKYAGEIKKSIFTVMNYLMPKDEHGWSEDGVFN  221 (295)
T ss_dssp             CSSSCEEEEETTT-TEEEEESCCCTHHHHHHHHHHHHHHGGGSEEEECSSCEEE
T ss_pred             CCCCCEEEECHHC-CEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
T ss_conf             6664179971201-8799956378999889999999866665522626786798


No 39 
>>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans} (A:)
Probab=40.23  E-value=8.4  Score=18.72  Aligned_cols=57  Identities=23%  Similarity=0.372  Sum_probs=35.7

Q ss_pred             EECCHHHHCCCCCCCHHHHHHHHCCC--CCE-EEECCHHH-HCCCCCCE----EECCCCC-CCCCC
Q ss_conf             98242430343210002466531243--642-47544044-01137633----3023321-00033
Q gi|254780653|r  114 ILAENVRFYSEEERNDPDFVRMLSRN--GDF-YINDAFSV-SHRAHASI----TGLSHLL-PSYIG  170 (400)
Q Consensus       114 lLLEN~Rf~~~E~~n~~~f~k~La~l--aDi-yVnDAF~~-aHR~haS~----~gi~~~l-ps~aG  170 (400)
                      .++++.|+..++....++|+....+.  +.+ ...+.||| |.|.||=.    .|+.-++ +||+-
T Consensus        58 ~~f~~~r~~~~~~~~~~d~~~~~~~~~~~~IlVaG~nfG~GSSREhAa~al~~~Gi~aVIA~SFa~  123 (213)
T 2hcu_A           58 YLMYEWRYLDNNYTENPDFIFNQPEYREASILITGDNFGAGSSREHAAWALADYGFKVIVAGSFGD  123 (213)
T ss_dssp             GTTHHHHBSSTTCCBCTTSGGGSGGGTTCCEEEECSSBTCSSCCHHHHHHHHHHTCCEEEESCBCH
T ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEECHHH
T ss_conf             301110021001345751000363356774897156100464257786768758604898600778


No 40 
>>1zdr_A Dihydrofolate reductase; DHFR, NADP, oxidoreductase; 2.00A {Geobacillus stearothermophilus} (A:)
Probab=39.89  E-value=24  Score=15.73  Aligned_cols=44  Identities=20%  Similarity=0.349  Sum_probs=25.3

Q ss_pred             CHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf             325565777653310166787189996078025578899877306888862
Q gi|254780653|r  170 GRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIG  220 (400)
Q Consensus       170 G~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiig  220 (400)
                      +..+...++..-+....+.+ -+.|+||+++      .+.+++.+|.+++.
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~-~i~viGG~~i------~~~~l~~~d~~~lt  115 (164)
T 1zdr_A           72 GCLVLHSLEEVKQWIASRAD-EVFIIGGAEL------FRATMPIVDRLYVT  115 (164)
T ss_dssp             TCEEECSHHHHHHHHHTCCS-CEEEEECHHH------HHHHGGGCCEEEEE
T ss_pred             CCEEECCHHHHHHHHHCCCC-EEEEECHHHH------HHHHHHHHHEEEEE
T ss_conf             54023158899998615684-2999510999------99999872377988


No 41 
>>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae TIGR4} (A:1-16,A:83-190)
Probab=39.51  E-value=25  Score=15.62  Aligned_cols=78  Identities=8%  Similarity=0.036  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCH
Q ss_conf             99988989999988980999913778889847332247888876431013354566631025566553136464898242
Q gi|254780653|r   39 IERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAEN  118 (400)
Q Consensus        39 I~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN  118 (400)
                      ...+.++|+.|-++|-++.++|...++-.+.-..+.   +.+++.......-.....--....+.+++.+.+.++++.++
T Consensus        18 ~pgv~e~L~~Lk~~g~~~~i~Sn~~~~~~~~l~~~~---l~~~fd~i~~~~~~~~~Kp~~~~~~~a~~~l~~~~~l~VgD   94 (124)
T 2fi1_A           18 FEGVSDLLEDISNQGGRHFLVSHRNDQVLEILEKTS---IAAYFTEVVTSSSGFKRKPNPESMLYLREKYQISSGLVIGD   94 (124)
T ss_dssp             CTTHHHHHHHHHHTTCEEEEECSSCTHHHHHHHHTT---CGGGEEEEECGGGCCCCTTSCHHHHHHHHHTTCSSEEEEES
T ss_pred             CCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECC
T ss_conf             620699986400120121202322222222223333---22222222222223445632999999999759997699907


Q ss_pred             H
Q ss_conf             4
Q gi|254780653|r  119 V  119 (400)
Q Consensus       119 ~  119 (400)
                      .
T Consensus        95 ~   95 (124)
T 2fi1_A           95 R   95 (124)
T ss_dssp             S
T ss_pred             C
T ss_conf             9


No 42 
>>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein structure initiative; 1.90A {Pseudoalteromonas atlantica T6C} (A:261-451)
Probab=38.82  E-value=26  Score=15.55  Aligned_cols=165  Identities=12%  Similarity=0.081  Sum_probs=82.2

Q ss_pred             CHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCC-CCCC---EEEEEEECCHHHHHHHHHHHHHCCCEEEECHH
Q ss_conf             4044011376333023321000332556577765331016-6787---18999607802557889987730688886205
Q gi|254780653|r  147 AFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLESCFSE-SKKP---LVAIVGGSKVSTKITLLINLVKKVDKLVIGGG  222 (400)
Q Consensus       147 AF~~aHR~haS~~gi~~~lps~aG~l~ekEi~~L~~~l~~-~~~P---~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~  222 (400)
                      +|..+-....|.--+ -.-++.+-..+++-+..+.+.... +..+   +..+++......-...++....+-..++.||.
T Consensus        23 ~~~~~Gq~C~a~~~i-~v~~~i~d~~~~~l~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~ga~~~~g~~  101 (191)
T 3k2w_A           23 RFANCGQVCTCVERL-YVHASVYDEFMAKFLPLVKGLKVGDPMDADSQMGPKCNQREIDNIDHIVHEAIKQGATVATGGK  101 (191)
T ss_dssp             HHGGGGCSTTSEEEE-EEETTTHHHHHHHHHHHHHTCCBSCTTSTTCSBCCCSCHHHHHHHHHHHHHHHHHHCEEEECCC
T ss_pred             HHHCCCCHHHCCCEE-EEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf             986149851347789-9976689999998999997154366667554315313899999999997654327988996786


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHH
Q ss_conf             78999998301434333310000135688998753024554303541134323233331025321201334576520035
Q gi|254780653|r  223 MANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTV  302 (400)
Q Consensus       223 lantfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~Ti  302 (400)
                      ....-....|+-+.-.+++....+  ..+.+      .+++-|+-.++..+... .-..+.........-.++-==...+
T Consensus       102 ~~~~~~~~~~~~~~ptii~~~~~~--~~~~~------~E~fgPvl~i~~~~~~e-eai~~~n~~~~glsa~i~s~d~~~~  172 (191)
T 3k2w_A          102 TATVEGFEGGCWYEPTVLVDVKQD--NIVVH------EETFGPILPIVKVSSME-QAIEFCNDSIYGLSAYVHTQSFANI  172 (191)
T ss_dssp             ---------CCCCCCEEEESCCTT--SHHHH------SCCCSSEEEEEEESCHH-HHHHHHTCSSEESEEEEECSBHHHH
T ss_pred             CCCCCCCCCCCEECCEEEECCCCC--CCCCC------CCCCCCEEEEEEECCHH-HHHHHHHCCCCCCEEEEEECCHHHH
T ss_conf             577655678836747799704776--65345------43637569999969999-9999986799998699990899999


Q ss_pred             HHHHHHHCCCCEEEEECCCC
Q ss_conf             67776405776799976625
Q gi|254780653|r  303 EYIKQVIAQARTVMWNGPLG  322 (400)
Q Consensus       303 ~~~~~~I~~AktI~WNGP~G  322 (400)
                      +.+.+.+. +..|.||.|+|
T Consensus       173 ~~~~~~~~-~G~v~vN~~ig  191 (191)
T 3k2w_A          173 NQAISDLE-VGEVYINRGMG  191 (191)
T ss_dssp             HHHHHHCC-SSEEEESCCSC
T ss_pred             HHHHHHCC-EEEEEEECCCC
T ss_conf             99998698-88999959988


No 43 
>>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus} (A:1-18,A:54-99)
Probab=38.48  E-value=15  Score=17.01  Aligned_cols=28  Identities=14%  Similarity=0.362  Sum_probs=23.2

Q ss_pred             EECCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             3023321000332556577765331016
Q gi|254780653|r  159 TGLSHLLPSYIGRAMQKELSMLESCFSE  186 (400)
Q Consensus       159 ~gi~~~lps~aG~l~ekEi~~L~~~l~~  186 (400)
                      -|++..+|+|.|.|=+.|+.+|-.-+.+
T Consensus        35 ~Gy~pvMP~y~g~Lsd~Ei~aLIaYIKS   62 (64)
T 1w2l_A           35 QGYPNVMPASYASLSEREVAALIEFIKQ   62 (64)
T ss_dssp             TTSCSCCCGGGGGCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHCCCCCHHHHHHHHHHHHH
T ss_conf             2356642010258999999999999997


No 44 
>>3dau_A Dihydrofolate reductase; oxidoreductase, pseudo-rossmann fold, adenine nucleotide binding domain, antibiotic resistance; HET: MTX NAP; 1.50A {Escherichia coli K12} PDB: 1ddr_A* 1dds_A* 1ra9_A* 1dre_A* 1drh_A* 1dyi_A* 1dyh_A* 1jol_A* 1jom_A* 1ra1_A* 1dyj_A* 1ra3_A* 1ra8_A* 1ra2_A* 1rb2_A* 1rb3_A* 1rc4_A* 1rd7_A* 1re7_A* 1rf7_A* ... (A:)
Probab=37.95  E-value=22  Score=15.96  Aligned_cols=39  Identities=15%  Similarity=0.388  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf             565777653310166787189996078025578899877306888862
Q gi|254780653|r  173 MQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIG  220 (400)
Q Consensus       173 ~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiig  220 (400)
                      +..+-+++.++- ..+  -+.|+||+.      +.+.+++.+|.+++.
T Consensus        75 ~~s~~~~l~~~~-~~~--~i~iiGG~~------i~~~~l~~~del~it  113 (159)
T 3dau_A           75 VKSVDEAIAACG-DVP--EIMVIGGGR------VYEQFLPKAQKLYLT  113 (159)
T ss_dssp             ESSHHHHHHTTC-SCS--CEEECCCHH------HHHHHGGGCSEEEEE
T ss_pred             CCCHHHHHHHHH-CCC--CEEEECCHH------HHHHHHHHCCEEEEE
T ss_conf             103889999861-687--349975768------999987550789999


No 45 
>>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with cofactor and product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} (A:289-436)
Probab=37.90  E-value=27  Score=15.46  Aligned_cols=126  Identities=17%  Similarity=0.144  Sum_probs=65.7

Q ss_pred             HHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             00159968999820167131857772589999889899999889809999137788898473322478888764310133
Q gi|254780653|r   10 LRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIAESILHKN   89 (400)
Q Consensus        10 ~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l~~~l~~~   89 (400)
                      +.+++|+||.|   +-.-.+.|  +||+|=-.+++-++.|.++|+.+.+--.+-.+..- . .....+....   .....
T Consensus        20 i~~~~~~~V~v---lGlafK~~--t~D~R~Spa~~l~~~L~~~G~~v~~~DP~v~~~~~-~-~~~~~~~~~~---~~~~~   89 (148)
T 1mv8_A           20 ITSHDTRKVGL---LGLSFKAG--TDDLRESPLVELAEMLIGKGYELRIFDRNVEYARV-H-GANKEYIESK---IPHVS   89 (148)
T ss_dssp             HTTSSCCEEEE---ECCSSSTT--CCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTT-S-SSCHHHHHHT---SHHHH
T ss_pred             HHHCCCCEEEE---ECCCCCCC--CCCCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHH-C-CHHHHHCCCC---CCCCC
T ss_conf             86215878966---55755899--97554786999999999789989998999987774-0-1012320012---45445


Q ss_pred             CCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCHHHHHH-HHCCCCCEEEECCHHHHCCCCCCEEECC
Q ss_conf             545666310255665531364648982424303432100024665-3124364247544044011376333023
Q gi|254780653|r   90 ILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEERNDPDFVR-MLSRNGDFYINDAFSVSHRAHASITGLS  162 (400)
Q Consensus        90 V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n~~~f~k-~La~laDiyVnDAF~~aHR~haS~~gi~  162 (400)
                      +..+++     ..++++   .-+.+++=         .+.++|.. .+..+..-.|.|..++-.+....-.|+.
T Consensus        90 ~~~~~~-----~~ea~~---~ad~vvi~---------t~h~ef~~l~~~~~~~~~v~D~r~i~~~~~~~~~g~~  146 (148)
T 1mv8_A           90 SLLVSD-----LDEVVA---SSDVLVLG---------NGDELFVDLVNKTPSGKKLVDLVGFMPHTTTAQAEGI  146 (148)
T ss_dssp             TTBCSC-----HHHHHH---HCSEEEEC---------SCCGGGHHHHHSCCTTCEEEESSSCCSSSCCSSEEES
T ss_pred             CEECCC-----HHHHHH---CCCEEEEC---------CCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCEE
T ss_conf             301388-----999986---49999990---------6888999789875089999989998687788452826


No 46 
>>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} (A:)
Probab=36.95  E-value=28  Score=15.36  Aligned_cols=47  Identities=17%  Similarity=0.262  Sum_probs=37.3

Q ss_pred             CCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf             159968999820167131857772589999889899999889809999137788
Q gi|254780653|r   12 DIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRP   65 (400)
Q Consensus        12 d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRP   65 (400)
                      -++||++.|.++=++      ++|+.++...+..|..|.+.|-++||. |=|+|
T Consensus        18 ~~~~k~iVIKiGGsv------i~d~~~~~~l~~dia~L~~~G~~iViV-hG~~~   64 (282)
T 2bty_A           18 EFYGKTFVIKFGGSA------MKQENAKKAFIQDIILLKYTGIKPIIV-HGGGP   64 (282)
T ss_dssp             HHTTCEEEEEECSHH------HHSHHHHHHHHHHHHHHHHTTCEEEEE-ECCSH
T ss_pred             HHCCCEEEEEECHHH------HCCHHHHHHHHHHHHHHHHCCCEEEEE-ECCCC
T ss_conf             858998999979067------268528999999999999889959999-79975


No 47 
>>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3itk_A* (A:327-467)
Probab=36.95  E-value=28  Score=15.36  Aligned_cols=42  Identities=14%  Similarity=0.193  Sum_probs=32.3

Q ss_pred             CCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             59968999820167131857772589999889899999889809999
Q gi|254780653|r   13 IRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIF   59 (400)
Q Consensus        13 ~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~   59 (400)
                      ++|+||.|   +-+-.+.+  +||.|--.+++-++.|.+.|+.|.+-
T Consensus         1 l~~~kIav---lGlafK~~--tdD~R~Spa~~i~~~L~~~Ga~V~~~   42 (141)
T 2q3e_A            1 VTDKKIAI---LGFAFKKD--TGDTRESSSIYISKYLMDEGAHLHIY   42 (141)
T ss_dssp             CTTCEEEE---ECCSSSTT--CCCCTTCHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCEEEE---EEEECCCC--CCCCCCCHHHHHHHHHHHCCCEEEEC
T ss_conf             57988999---98640443--42234560355799897569889867


No 48 
>>2w3w_A Dihydrofolate reductase; nonclassical antifolates, one-carbon metabolism, lipophilic antifolates, NADP, oxidoreductase; HET: VG9 NDP; 1.60A {Mycobacterium avium} PDB: 2w3v_A* (A:)
Probab=36.37  E-value=20  Score=16.31  Aligned_cols=74  Identities=14%  Similarity=0.082  Sum_probs=31.5

Q ss_pred             CCCHHHHHHHHH---HCCCCEEEEECCCCCCCCCC-HHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCCCC
Q ss_conf             520035677764---05776799976625322743-65889999999986111488589974804699899848876864
Q gi|254780653|r  297 VGFKTVEYIKQV---IAQARTVMWNGPLGVFEIEP-FDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAGISNEFT  372 (400)
Q Consensus       297 IGp~Ti~~~~~~---I~~AktI~WNGP~GvfE~~~-F~~GT~~l~~~ia~~~~~~~~~sivGGGdT~aai~~~g~~~~~~  372 (400)
                      .|.+|.+.+.+.   ..+-..+.....+..-.... +.....+.   +..+..... .-|+|||.+...+-+.++.+.+.
T Consensus        46 mGr~Tye~~~~~~~~l~~~~~iV~S~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-i~v~GG~~i~~~~l~~~lvdei~  121 (167)
T 2w3w_A           46 MGRRTWESLPAKVRPLPGRRNVVVSRRPDFVAEGARVAGSLEAA---LAYAGSDPA-PWVIGGAQIYLLALPHATRCEVT  121 (167)
T ss_dssp             EEHHHHHHSCGGGSSCTTSEEEEECSCTTCCCTTSEEESSHHHH---HHHTTTCSS-CEEEECHHHHHHHGGGCSEEEEE
T ss_pred             EECCHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEECCHHHHH---HHHHHCCCC-EEEEECHHHHHHHHCCCCEEEEE
T ss_conf             80662342531450289981799843532012331000138999---998642650-69982078888651305789999


Q ss_pred             EE
Q ss_conf             68
Q gi|254780653|r  373 YV  374 (400)
Q Consensus       373 hv  374 (400)
                      .+
T Consensus       122 ~~  123 (167)
T 2w3w_A          122 EI  123 (167)
T ss_dssp             EE
T ss_pred             EE
T ss_conf             99


No 49 
>>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreductase, porphyrin biosynthesis; 2.30A {Bacillus megaterium} (A:1-126)
Probab=36.00  E-value=25  Score=15.64  Aligned_cols=24  Identities=21%  Similarity=0.422  Sum_probs=12.9

Q ss_pred             CCCEEEEEEECCHHHHHHHHHHHHHC
Q ss_conf             78718999607802557889987730
Q gi|254780653|r  188 KKPLVAIVGGSKVSTKITLLINLVKK  213 (400)
Q Consensus       188 ~~P~v~IiGGaKisdKi~~i~~L~~k  213 (400)
                      +...+.|+|+.++.  ..+.+.|.+.
T Consensus        30 ~~k~vlIiG~G~~G--~~~a~~L~~~   53 (126)
T 3dfz_A           30 KGRSVLVVGGGTIA--TRRIKGFLQE   53 (126)
T ss_dssp             TTCCEEEECCSHHH--HHHHHHHGGG
T ss_pred             CCCEEEEECCCHHH--HHHHHHHHHC
T ss_conf             98859998998999--9999999638


No 50 
>>2go7_A Hydrolase, haloacid dehalogenase-like family; NP_346487.1, structural genomics, PSI, protein structure initiative; 2.10A {Streptococcus pneumoniae TIGR4} (A:1-15,A:86-207)
Probab=34.91  E-value=30  Score=15.16  Aligned_cols=26  Identities=15%  Similarity=0.152  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf             99889899999889809999137788
Q gi|254780653|r   40 ERVVPTILELVEKKAKVVIFSHLGRP   65 (400)
Q Consensus        40 ~~~~pTI~~l~~~~akvii~SH~GRP   65 (400)
                      ..+.+++++|-++|.+++++|+..++
T Consensus        18 pgv~~~L~~L~~~g~~i~i~Sn~~~~   43 (137)
T 2go7_A           18 PGAREVLAWADESGIQQFIYTHKGNN   43 (137)
T ss_dssp             TTHHHHHHHHHHTTCEEEEECSSCTH
T ss_pred             CHHHHHHHCCCCCCCCHHHHCCHHHH
T ss_conf             25777653111222210332000577


No 51 
>>2jfg_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; nucleotide-binding, peptidoglycan synthesis, MURD ligase, ATP-binding, cell division, UMA, ADP; HET: KCX UMA ADP; 1.52A {Escherichia coli} (A:301-445)
Probab=34.80  E-value=30  Score=15.14  Aligned_cols=59  Identities=14%  Similarity=0.013  Sum_probs=39.0

Q ss_pred             HHHHHHHHCCCCCCCEEEEEEEC-CHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCC
Q ss_conf             77765331016678718999607-8025578899877306888862057899999830143
Q gi|254780653|r  176 ELSMLESCFSESKKPLVAIVGGS-KVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGV  235 (400)
Q Consensus       176 Ei~~L~~~l~~~~~P~v~IiGGa-KisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~I  235 (400)
                      ++.++-..+..+.| .++|+||. ...+.-.++..+....|.+++.|.-+-.+..+.+.++
T Consensus        26 s~~a~l~~l~~~~r-~i~v~g~~~~~~~~~~~~~~~~~~~d~vi~~g~~~~~~~~~~~~~~   85 (145)
T 2jfg_A           26 STEAALNGLHVDGT-LHLLLGGDGKSADFSPLARYLNGDNVRLYCFGRDGAQLAALRPEVA   85 (145)
T ss_dssp             HHHHHHTTCCCSSC-EEEEEESBCTTCCCGGGGGGSCSSSEEEEEESTTHHHHHTTSGGGE
T ss_pred             HHHHHHHCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCC
T ss_conf             88875410123233-3222235664014899999985138899998989899985377771


No 52 
>>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} (A:)
Probab=33.42  E-value=32  Score=15.00  Aligned_cols=202  Identities=16%  Similarity=0.137  Sum_probs=87.7

Q ss_pred             HHHHHHHCCCCCCCEEEEEEECCHHHH---HHH-------HHHHHHCCCEEE-ECHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             776533101667871899960780255---788-------998773068888-620578999998301434333310000
Q gi|254780653|r  177 LSMLESCFSESKKPLVAIVGGSKVSTK---ITL-------LINLVKKVDKLV-IGGGMANSFLVAQGMGVGRSLCQRDFS  245 (400)
Q Consensus       177 i~~L~~~l~~~~~P~v~IiGGaKisdK---i~~-------i~~L~~k~D~ii-igG~lantfL~A~G~~IG~Sl~e~~~~  245 (400)
                      .+.++.+-.-..+..+.-+||+-+.++   ...       +..+.+..+.++ .||+.......+.|...+.+.......
T Consensus         8 ~~~~~~~~~~~~~~~viK~Ggs~i~~~~~~~~~l~~~~~~i~~~~~~~~~iiv~g~g~~~~~~~~~~~~~~~~~~~~~~~   87 (244)
T 2brx_A            8 HHSSGLVPRGSHMRIVFDIGGSVLVPENPDIDFIKEIAYQLTKVSEDHEVAVVVGGGKLARKYIEVAEKFNSSETFKDFI   87 (244)
T ss_dssp             -----------CCEEEEEECHHHHCSSSCCHHHHHHHHHHHHHHHHHSEEEEEECCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred             CCCCCCCCCCCCCEEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             55778876776457999954554189999999999999999999859948999897633134788766531217889998


Q ss_pred             HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEC--CCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             13568899875302455430354113432323333102532120--1334576520035677764057767999766253
Q gi|254780653|r  246 DNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVP--LDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGV  323 (400)
Q Consensus       246 ~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~~~~~~~~i~--~~~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~Gv  323 (400)
                      ...-........  ....-+....+... .............+|  .+..+..=+..+...+...+.--+-++|...-|+
T Consensus        88 ~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~l~~g~ipv~~g~~~~~~sD~~A~~lA~~l~A~~lii~tDV~GV  164 (244)
T 2brx_A           88 GIQITRANAMLL--IAALREKAYPVVVE-DFWEAWKAVQLKKIPVMGGTHPGHTTDAVAALLAEFLKADLLVVITNVDGV  164 (244)
T ss_dssp             HHHHHHHHHHHH--HHHHGGGBCSSCBC-SHHHHHHHHHTTCBCEECCCSTTCCHHHHHHHHHHHTTCSEEEEECSSSSC
T ss_pred             HHHHHHHHHHHH--HHHHHHHHCCCCCC-CHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             889999999999--99998612243234-689999986530134236889987602999999998280688876545442


Q ss_pred             CCCCCHH--------HHHHHHHHHHHHHHCCCCCEEEECCC-----HHHHHHHHCCCCCCCCEEECC--HHHHHHHHCCC
Q ss_conf             2274365--------88999999998611148858997480-----469989984887686468750--79989987489
Q gi|254780653|r  324 FEIEPFD--------RATVEVAHYVAKLTKERRIISIAGGG-----DTITALAHAGISNEFTYVSTA--GGAFLEWLEGK  388 (400)
Q Consensus       324 fE~~~F~--------~GT~~l~~~ia~~~~~~~~~sivGGG-----dT~aai~~~g~~~~~~hvSTg--GGA~L~~L~G~  388 (400)
                      |..++-.        .=|.+-+..++.    .+. ..+.||     .++..+.+.|+.   .||..+  -++..++|.|+
T Consensus       165 ~~~dp~~~~~a~~i~~ls~~e~~~l~~----~g~-~~~~ggm~~k~~a~~~a~~~gi~---v~I~~~~~p~~l~~~l~g~  236 (244)
T 2brx_A          165 YTADPKKDPTAKKIKKMKPEELLEIVG----KGI-EKAGSSSVIDPLAAKIIARSGIK---TIVIGKEDAKDLFRVIKGD  236 (244)
T ss_dssp             BSSCTTTCTTCCBCSEECHHHHHHHHH----C---------CCSCHHHHHHHHHHTCC---EEEECHHHHTCHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCEEEECCHHHHHHH----CCC-CCCCCCCEECHHHHHHHHHCCCC---EEEEECCCCCHHHHHHCCC
T ss_conf             136433477554544996055789850----777-65899981159999999987994---8997089973799997699


Q ss_pred             C
Q ss_conf             9
Q gi|254780653|r  389 D  389 (400)
Q Consensus       389 ~  389 (400)
                      .
T Consensus       237 ~  237 (244)
T 2brx_A          237 H  237 (244)
T ss_dssp             S
T ss_pred             C
T ss_conf             9


No 53 
>>2o8b_A DNA mismatch repair protein MSH2; DNA damage response, somatic hypermutation, protein-DNA complex, DNA mispair, cancer, ABC transporter ATPase; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 2o8e_A* (A:289-323,A:618-823)
Probab=31.52  E-value=29  Score=15.24  Aligned_cols=23  Identities=17%  Similarity=0.205  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf             56577765331016678718999
Q gi|254780653|r  173 MQKELSMLESCFSESKKPLVAIV  195 (400)
Q Consensus       173 ~ekEi~~L~~~l~~~~~P~v~Ii  195 (400)
                      +..|+..+..+++...+..++++
T Consensus       143 F~~El~~i~~il~~~t~~SLVLi  165 (241)
T 2o8b_A          143 FMAEMLETASILRSATKDSLIII  165 (241)
T ss_dssp             HHHHHHHHHHHHTTCCTTSEEEE
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             99999999999985899829998


No 54 
>>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} (A:298-428)
Probab=31.02  E-value=35  Score=14.75  Aligned_cols=47  Identities=11%  Similarity=0.080  Sum_probs=31.1

Q ss_pred             HHHHHHHHHCC-CCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECH
Q ss_conf             57776533101-667871899960780255788998773068888620
Q gi|254780653|r  175 KELSMLESCFS-ESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGG  221 (400)
Q Consensus       175 kEi~~L~~~l~-~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG  221 (400)
                      ..++++-..+. .+.++.++|+|..+-.|.-.++..+.+..+.+++..
T Consensus        22 ~~i~~~~~~l~~~~~~~~~~v~~~~~dkd~~~~~~~l~~~~~~~~~~~   69 (131)
T 1jbw_A           22 DGINGLITALKQLFSQPITVIAGILADKDYAAMADRLTAAFSTVYLVP   69 (131)
T ss_dssp             HHHHHHHHHHHHHCSSCCEEEEECSSSTTHHHHHHHHHHHCSEEEECC
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCEEEEEC
T ss_conf             999999999998617882389974179799999999884489999999


No 55 
>>3ia4_A Dihydrofolate reductase; NADPH, methotrexate, oxidoreductase; HET: NDP MTX; 1.70A {Moritella profunda} PDB: 3ia5_A (A:)
Probab=30.55  E-value=30  Score=15.16  Aligned_cols=43  Identities=16%  Similarity=0.279  Sum_probs=24.6

Q ss_pred             CHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf             325565777653310166787189996078025578899877306888862
Q gi|254780653|r  170 GRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIG  220 (400)
Q Consensus       170 G~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiig  220 (400)
                      |..+..++...-..++..+  -+.|+||+++      ...+++.+|.+.+.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~--~I~i~GG~~i------~~~~l~~~d~l~it  115 (162)
T 3ia4_A           73 GVTVVATLEDAVVAAGDVE--ELMIIGGATI------YNQCLAAADRLYLT  115 (162)
T ss_dssp             TSEEESSHHHHHHHHTTCS--EEEECCCHHH------HHHHGGGCSEEEEE
T ss_pred             CEEEECCHHHHHHHHCCCC--CEEEECHHHH------HHHHHHHCCEEEEE
T ss_conf             8089737899998726887--3799447999------99999779999998


No 56 
>>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} (A:)
Probab=30.27  E-value=36  Score=14.67  Aligned_cols=76  Identities=20%  Similarity=0.105  Sum_probs=43.3

Q ss_pred             CCCCCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHH
Q ss_conf             98887710100159968999820167131857772589999889899999889809999137788898473322478888
Q gi|254780653|r    1 MSRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVS   80 (400)
Q Consensus         1 M~~~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~   80 (400)
                      |++.++..-+ +|+||+|||       .-     -.+-|=+  -+-+.|.++|++|++.+   |     + .-.++..++
T Consensus         8 ~~~~~~~~~~-~l~gKvvlV-------TG-----as~GIG~--aiA~~la~~Ga~V~i~~---r-----~-~~~l~~~~~   63 (273)
T 1ae1_A            8 MMNCNNEGRW-SLKGTTALV-------TG-----GSKGIGY--AIVEELAGLGARVYTCS---R-----N-EKELDECLE   63 (273)
T ss_dssp             --------CC-CCTTCEEEE-------ES-----CSSHHHH--HHHHHHHHTTCEEEEEE---S-----C-HHHHHHHHH
T ss_pred             CCCCCCCCCC-CCCCCEEEE-------EC-----CCCHHHH--HHHHHHHHCCCEEEEEE---C-----C-HHHHHHHHH
T ss_conf             2467999966-699998999-------48-----8879999--99999998799999997---9-----9-899999999


Q ss_pred             HHHHHCCCCCCCCCCCCHHH
Q ss_conf             76431013354566631025
Q gi|254780653|r   81 IAESILHKNILFVNDCIGST  100 (400)
Q Consensus        81 ~l~~~l~~~V~fi~d~~g~~  100 (400)
                      .+++.-+....+.-|...++
T Consensus        64 ~~~~~~~~~~~~~~d~~~~~   83 (273)
T 1ae1_A           64 IWREKGLNVEGSVCDLLSRT   83 (273)
T ss_dssp             HHHHTTCCEEEEECCTTCHH
T ss_pred             HHHHCCCCCEEEECCCCCHH
T ss_conf             99842788335651569999


No 57 
>>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, complete proteome, DNA binding, DNA repair; HET: DNA ADP; 2.10A {Escherichia coli} (A:568-768)
Probab=29.84  E-value=36  Score=14.64  Aligned_cols=42  Identities=12%  Similarity=0.210  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHCCCCCCCEEEEEE----ECCHHHHHH----HHHHHHHC
Q ss_conf             5565777653310166787189996----078025578----89987730
Q gi|254780653|r  172 AMQKELSMLESCFSESKKPLVAIVG----GSKVSTKIT----LLINLVKK  213 (400)
Q Consensus       172 l~ekEi~~L~~~l~~~~~P~v~IiG----GaKisdKi~----~i~~L~~k  213 (400)
                      .+..|+..+++++.+.....++++=    |....|...    +++.|+++
T Consensus       102 tF~~El~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~aile~l~~~  151 (201)
T 1wb9_A          102 TFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANK  151 (201)
T ss_dssp             -CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             69999999999998589980999805999988699999999999999863


No 58 
>>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} (A:140-281)
Probab=26.34  E-value=42  Score=14.23  Aligned_cols=119  Identities=12%  Similarity=-0.036  Sum_probs=56.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             10003325565777653310166787189996078025578899877306888862057899999830143433331000
Q gi|254780653|r  165 LPSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDF  244 (400)
Q Consensus       165 lps~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~Sl~e~~~  244 (400)
                      .|...|.-.-.-...+...-..+++  ++|+||.-+  -+.+...|....-++-+--         ++..+..+    ..
T Consensus         6 ~p~ipG~~~~~~~~~~~~~~~~~k~--v~ViGgG~i--g~E~A~~l~~~g~~Vtli~---------~~~~i~~~----~~   68 (142)
T 1ges_A            6 HPDIPGVEYGIDSDGFFALPALPER--VAVVGAGYI--GVELGGVINGLGAKTHLFE---------MFDAPLPS----FD   68 (142)
T ss_dssp             CCCSTTGGGSBCHHHHHHCSSCCSE--EEEECCSHH--HHHHHHHHHHTTCEEEEEC---------SSSSSSTT----SC
T ss_pred             CCCCCCCCEEECCHHHHHHHHCCCE--EEEECCCHH--HHHHHHHHHHCCCEEEEEE---------ECCCCCCC----CC
T ss_conf             7889997344113033346528961--999888416--9999999997598799852---------01356777----65


Q ss_pred             CHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCC-CCCCCCCEECCCCCCCCCCCH
Q ss_conf             01356889987530245543035411343232333-310253212013345765200
Q gi|254780653|r  245 SDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIP-TQVVSAQSVPLDSIILDVGFK  300 (400)
Q Consensus       245 ~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~-~~~~~~~~i~~~~~i~DIGp~  300 (400)
                      .+....+.+..++++..+++.....-......... ....+-+.++-+..++-+|-.
T Consensus        69 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~  125 (142)
T 1ges_A           69 PMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGRE  125 (142)
T ss_dssp             HHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHHHHCCEEEECCEEEEEEEECCCCEEEEEECCCCEEEEEEEEEECCCC
T ss_conf             666567776654325342015058999975894377770799657667999924751


No 59 
>>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A (A:14-201,A:277-337)
Probab=25.75  E-value=16  Score=16.87  Aligned_cols=73  Identities=7%  Similarity=0.004  Sum_probs=38.5

Q ss_pred             HHHHHHCCCCCEEEECCHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHH-HHCCCCCCCEEEEEEECCHHHHH
Q ss_conf             466531243642475440440113763330233210003325565777653-31016678718999607802557
Q gi|254780653|r  131 DFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLE-SCFSESKKPLVAIVGGSKVSTKI  204 (400)
Q Consensus       131 ~f~k~La~laDiyVnDAF~~aHR~haS~~gi~~~lps~aG~l~ekEi~~L~-~~l~~~~~P~v~IiGGaKisdKi  204 (400)
                      +-+....+--|+||.|+|..+|..|.--+-+-.-.+- .-+-|..-+---+ .-+.+..-.++.+=-+....+++
T Consensus        87 ~~~~~yL~~kdlyV~D~~aGaDp~~rl~VRvIte~Aw-haLF~~nMfiRPt~eel~~f~pdfvI~n~~~f~a~~~  160 (249)
T 1ytm_A           87 ALAGKELSNKPLYVVDLFCGANENTRLKIRFVMEVAW-QAHFVTNMFIRPTEEELKGFEPDFVVLNASKAKVENF  160 (249)
T ss_dssp             HHHHHHHSSSEEEEEEEEESSCTTTCEEEEEEESCHH-HHHHHHHHSBCCCHHHHTTCCCSEEEEEETTCCCTTT
T ss_pred             HHHHHHHCCCCEEEEEEEECCCCCCCEEEEEEEEHHH-HHHHHHHHCCCCCHHHHHCCCCCEEEEECCCCCCCCC
T ss_conf             9999985379879986477178453333799860103-8899987356873455402356258983575567983


No 60 
>>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* (B:1-60,B:173-240,B:335-405)
Probab=25.17  E-value=44  Score=14.09  Aligned_cols=80  Identities=10%  Similarity=0.044  Sum_probs=51.3

Q ss_pred             CHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             01356889987530245543035411343232333310253212013345765200356777640577679997662532
Q gi|254780653|r  245 SDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVF  324 (400)
Q Consensus       245 ~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~Gvf  324 (400)
                      -+.++.+.+.++++|++|++-..+.--..-.........+-..++.+..++=+|..+-......=...-.....+....+
T Consensus        62 ~~l~~~l~~~~~~~GV~i~~~~~V~~i~~~~~~v~~v~t~~~~i~ad~VI~A~G~~~~~~~~~lg~~~~~~~~~~~~~~~  141 (199)
T 2gag_B           62 DHVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRGTIHAGKVALAGAGHSSVLAEMAGFEASPIISKTPIQNL  141 (199)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTCCEEEEEEEECCGGGHHHHHHHHTCCSCCEEEECSSBTE
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEEECCCEEEEEECCCCEEECCEEEECCCCHHHHHHHCCCCCCEEEEEECCCCE
T ss_conf             99999999999867989994775899999699069999279745421058855704387898649729808988578999


No 61 
>>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli} (A:1-108,A:251-276)
Probab=23.83  E-value=46  Score=13.93  Aligned_cols=59  Identities=17%  Similarity=0.082  Sum_probs=40.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHC-CCEEEECH
Q ss_conf             321000332556577765331016678718999607802557889987730-68888620
Q gi|254780653|r  163 HLLPSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKK-VDKLVIGG  221 (400)
Q Consensus       163 ~~lps~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k-~D~iiigG  221 (400)
                      -.+|..-...+..-++.+.+..+...--++..-+....++....++.++.+ +|.|++.+
T Consensus         7 vi~~~~~~~f~~~i~~gi~~~a~~~G~~l~i~~~~~d~~~e~~~i~~l~~~~vDGIIi~~   66 (134)
T 2vk2_A            7 FSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAP   66 (134)
T ss_dssp             EEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECC
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             996899899999999999999998599899995899999999999999975999999832


No 62 
>>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, ATP-binding cassette, cytoplasm; HET: ADP; 3.20A {Geobacillus stearothermophilus 10} (A:620-714,A:864-972)
Probab=23.10  E-value=48  Score=13.84  Aligned_cols=24  Identities=25%  Similarity=0.524  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf             999988989999988980999913
Q gi|254780653|r   38 RIERVVPTILELVEKKAKVVIFSH   61 (400)
Q Consensus        38 RI~~~~pTI~~l~~~~akvii~SH   61 (400)
                      .....+..|+.|-++|..||+++|
T Consensus       115 ~~~~l~~~L~~L~~~G~TVIiVtH  138 (204)
T 2r6f_A          115 DIARLLDVLHRLVDNGDTVLVIEH  138 (204)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEECC
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             999999999999976999999917


No 63 
>>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} (A:)
Probab=23.10  E-value=48  Score=13.84  Aligned_cols=67  Identities=10%  Similarity=-0.053  Sum_probs=40.0

Q ss_pred             HCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             01599689998201671318577725899998898999998898099991377888984733224788887643101335
Q gi|254780653|r   11 RDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIAESILHKNI   90 (400)
Q Consensus        11 ~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l~~~l~~~V   90 (400)
                      .+++||+|||       .-     -..-|  -.-+-+.|.++|++|++.++.         .-.+....+.+++.-...+
T Consensus         8 ~~l~gK~vlI-------TG-----as~GI--G~aiA~~la~~Ga~Vii~~r~---------~~~~~~~~~~~~~~~~~~~   64 (256)
T 3gaf_A            8 FHLNDAVAIV-------TG-----AAAGI--GRAIAGTFAKAGASVVVTDLK---------SEGAEAVAAAIRQAGGKAI   64 (256)
T ss_dssp             TCCTTCEEEE-------CS-----CSSHH--HHHHHHHHHHHTCEEEEEESS---------HHHHHHHHHHHHHTTCCEE
T ss_pred             CCCCCCEEEE-------EC-----CCCHH--HHHHHHHHHHCCCEEEEEECC---------HHHHHHHHHHHHHCCCCEE
T ss_conf             6999998999-------38-----78789--999999999879999999798---------8999999999997499589


Q ss_pred             CCCCCCCHHH
Q ss_conf             4566631025
Q gi|254780653|r   91 LFVNDCIGST  100 (400)
Q Consensus        91 ~fi~d~~g~~  100 (400)
                      .+..|...++
T Consensus        65 ~~~~d~~~~~   74 (256)
T 3gaf_A           65 GLECNVTDEQ   74 (256)
T ss_dssp             EEECCTTCHH
T ss_pred             EEECCCCCHH
T ss_conf             9983479999


No 64 
>>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} (A:1-45,A:167-277,A:559-671)
Probab=22.99  E-value=48  Score=13.83  Aligned_cols=33  Identities=27%  Similarity=0.386  Sum_probs=18.0

Q ss_pred             CCCEEEEEEECCHHHHHHHHHHHHHCC----CEEEECH
Q ss_conf             787189996078025578899877306----8888620
Q gi|254780653|r  188 KKPLVAIVGGSKVSTKITLLINLVKKV----DKLVIGG  221 (400)
Q Consensus       188 ~~P~v~IiGGaKisdKi~~i~~L~~k~----D~iiigG  221 (400)
                      .+-.|+|+||+-.+ -+..+..+.++.    -.|++||
T Consensus       207 ~~viVFviGG~Tys-E~r~~~e~s~~~~~~~~~ViiGs  243 (269)
T 1mqs_A          207 NKSLVFVVGGGNYL-EYQNLQEWAHSQLHNPKKVXYGS  243 (269)
T ss_dssp             SEEEEEEETCBCHH-HHHHHHHHHTTCCSSCCEEEEEE
T ss_pred             CEEEEEEECCCCHH-HHHHHHHHHHHCCCCCCEEEEEE
T ss_conf             88999998991899-99999999985268994899943


No 65 
>>3kjr_A Dihydrofolate reductase/thymidylate synthase; microfluidics, slipchip,structural genomics, PSI-2, protein structure initiative; HET: NAP NHE; 1.95A {Babesia bovis T2BO} PDB: 3i3r_A* 3k2h_A* (A:1-227,A:472-511)
Probab=22.58  E-value=49  Score=13.77  Aligned_cols=23  Identities=26%  Similarity=0.501  Sum_probs=12.0

Q ss_pred             EEEEEEECCHHHHHHHHHHHHHC--CCEEEE
Q ss_conf             18999607802557889987730--688886
Q gi|254780653|r  191 LVAIVGGSKVSTKITLLINLVKK--VDKLVI  219 (400)
Q Consensus       191 ~v~IiGGaKisdKi~~i~~L~~k--~D~iii  219 (400)
                      -+.|+||+.+      ...+++.  +|.|.+
T Consensus       119 ~I~ViGG~~i------~~~~L~~~lvDei~l  143 (267)
T 3kjr_A          119 KIFILGGSFL------YKEVLDNGLCDKIYL  143 (267)
T ss_dssp             CEEECCCHHH------HHHHHHTTCEEEEEE
T ss_pred             EEEEECCHHH------HHHHCCCCCCCEEEE
T ss_conf             0899740999------998706245878999


No 66 
>>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} (A:91-179)
Probab=22.44  E-value=49  Score=13.76  Aligned_cols=24  Identities=17%  Similarity=0.245  Sum_probs=15.7

Q ss_pred             CCCEEEECCCHHHHHHHHCCCCCC
Q ss_conf             885899748046998998488768
Q gi|254780653|r  347 RRIISIAGGGDTITALAHAGISNE  370 (400)
Q Consensus       347 ~~~~sivGGGdT~aai~~~g~~~~  370 (400)
                      .++-.||||+-+....+++|+..-
T Consensus        63 ~G~~vVIG~~~~~~~A~~~Gl~~v   86 (89)
T 2pju_A           63 NGTEAVVGAGLITDLAEEAGMTGI   86 (89)
T ss_dssp             TTCCEEEESHHHHHHHHHTTSEEE
T ss_pred             CCCCEEECCHHHHHHHHHCCCCEE
T ss_conf             699799998699999998499789


No 67 
>>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutation, protein-DNA complex, DNA mispair, cancer, ABC transporter ATPase; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* (B:382-418,B:733-957)
Probab=22.11  E-value=40  Score=14.33  Aligned_cols=17  Identities=29%  Similarity=0.436  Sum_probs=6.9

Q ss_pred             EEEEEECCHHHHHHHHH
Q ss_conf             89996078025578899
Q gi|254780653|r  192 VAIVGGSKVSTKITLLI  208 (400)
Q Consensus       192 v~IiGGaKisdKi~~i~  208 (400)
                      +.||-|+..+-|=-.|+
T Consensus        96 v~iITGpN~gGKSt~Lk  112 (262)
T 2o8b_B           96 CVLVTGPNMGGKSTLMR  112 (262)
T ss_dssp             EEEEECCTTSSHHHHHH
T ss_pred             EEEEECCCCCCCHHHHH
T ss_conf             89996788777188999


No 68 
>>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} (A:)
Probab=22.00  E-value=50  Score=13.70  Aligned_cols=22  Identities=18%  Similarity=0.542  Sum_probs=12.0

Q ss_pred             EEEEEECCHHHHHHHHHHHHHCCCEEEE
Q ss_conf             8999607802557889987730688886
Q gi|254780653|r  192 VAIVGGSKVSTKITLLINLVKKVDKLVI  219 (400)
Q Consensus       192 v~IiGGaKisdKi~~i~~L~~k~D~iii  219 (400)
                      +.|+||+.      +...+++.+|.+.+
T Consensus        97 i~v~GG~~------i~~~~l~liDel~l  118 (162)
T 1vdr_A           97 AYVIGGAA------IYALFQPHLDRMVL  118 (162)
T ss_dssp             EEEEECHH------HHHHHGGGCSEEEE
T ss_pred             EEEEECHH------HHHHHHHHCCEEEE
T ss_conf             99992648------87655521777999


No 69 
>>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} (A:123-237)
Probab=21.58  E-value=51  Score=13.65  Aligned_cols=101  Identities=14%  Similarity=0.123  Sum_probs=50.8

Q ss_pred             HHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             57776533101667871899960780255788998773068888620578999998301434333310000135688998
Q gi|254780653|r  175 KELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNVHQIAWE  254 (400)
Q Consensus       175 kEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~Sl~e~~~~~~ak~i~~~  254 (400)
                      .+...+...+..+..-.++|+||.-+  -+.+...|...--++.+             ++-+..+...-..+....+.+.
T Consensus        12 ~~~~~~~~~~~~~~~~~i~IiGgG~~--g~e~A~~l~~~g~~v~l-------------v~~~~~~~~~~~~~~~~~~~~~   76 (115)
T 1yqz_A           12 EDTDAIDQFIKANQVDKVLVVGAGYV--SLEVLENLYERGLHPTL-------------IHRSDKINKLMDADMNQPILDE   76 (115)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEECCSHH--HHHHHHHHHHHTCEEEE-------------EESSSCCSTTSCGGGGHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCEEEEEEEEEE--CCCCCCCEECCCCCCCE-------------EECCCCCCCCCHHHHHHHHHHH
T ss_conf             43322122212345550578631100--01222110003232100-------------1100022332013455555421


Q ss_pred             HHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf             7530245543035411343232333310253212013345
Q gi|254780653|r  255 AKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSII  294 (400)
Q Consensus       255 a~~~~~~I~lP~D~~v~~~~~~~~~~~~~~~~~i~~~~~i  294 (400)
                      .+++|.++++-.-+..-.+    ......+-+.++.+..+
T Consensus        77 l~~~gI~~~~~~~v~~i~~----~~v~~~~g~~i~~D~vi  112 (115)
T 1yqz_A           77 LDKREIPYRLNEEINAING----NEITFKSGKVEHYDMII  112 (115)
T ss_dssp             HHHTTCCEEESCCEEEEET----TEEEETTSCEEECSEEE
T ss_pred             CCCCEEEEEECCEEEEEEE----CCCCCCCCCCCCCCCCE
T ss_conf             1234069985767777640----23322111222233422


No 70 
>>1ig0_A Thiamin pyrophosphokinase; protein-substrate complex, compound active site, alpha-beta- alpha, beta sandwich, transferase; HET: VIB; 1.80A {Saccharomyces cerevisiae} (A:)
Probab=21.48  E-value=52  Score=13.63  Aligned_cols=95  Identities=13%  Similarity=0.110  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHH--------CCCCCCCCCCCC
Q ss_conf             556577765331016678718999607802557889987730688886205789999983--------014343333100
Q gi|254780653|r  172 AMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQ--------GMGVGRSLCQRD  243 (400)
Q Consensus       172 l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~--------G~~IG~Sl~e~~  243 (400)
                      .|++++..+.-+..+...+.++|+.|..+......+..+.++++.++-.=|=||-.+..+        |+.- .-++ -|
T Consensus        20 ~~~~~~~~~~~l~~~~~~~~~~Iilng~~~~~~~~~~~~~~~~~~~I~aDGGan~L~d~~~~~~~~~~g~~P-d~ii-GD   97 (319)
T 1ig0_A           20 NIRNKMNLKELIHPNEDENSTLLILNQKIDIPRPLFYKIWKLHDLKVCADGAANRLYDYLDDDETLRIKYLP-NYII-GD   97 (319)
T ss_dssp             CCCEEEESGGGTSCCTTSEEEEEECSSCCCSCHHHHHHHHHHCSEEEEETTHHHHHHHHSCSCHHHHTTSCC-SEEE-EC
T ss_pred             HCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCEEEEECCCHHHHHHHHCCCCCHHCCCCC-CEEE-CC
T ss_conf             231412620134755677745999899788887999999966898999258488877654133202207889-9797-54


Q ss_pred             CCHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             0013568899875302455430354
Q gi|254780653|r  244 FSDNVHQIAWEAKRSACEIIVPRDV  268 (400)
Q Consensus       244 ~~~~ak~i~~~a~~~~~~I~lP~D~  268 (400)
                      +...-.+.....+.++++++-+.|.
T Consensus        98 fDS~~~~~~~~~~~~~~~~~~~~d~  122 (319)
T 1ig0_A           98 LDSLSEKVYKYYRKNKVTIIKQTTQ  122 (319)
T ss_dssp             CTTSCHHHHHHHHHTTCEEEECCCS
T ss_pred             CCCCCHHHHHHHHHCCCEEEECCCC
T ss_conf             8799989999998679769989876


No 71 
>>1k2x_A Putative L-asparaginase; NTN hydrolase, asparginase, autoproteolysis; HET: CME; 1.65A {Escherichia coli} (A:72-139)
Probab=20.90  E-value=53  Score=13.56  Aligned_cols=53  Identities=17%  Similarity=0.210  Sum_probs=43.8

Q ss_pred             HCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCC
Q ss_conf             10166787189996078025578899877306888862057899999830143
Q gi|254780653|r  183 CFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGV  235 (400)
Q Consensus       183 ~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~I  235 (400)
                      +++...+-+-+|.+=..+..-|.+-+.++++..+.++.|--|..|.+..|+++
T Consensus        14 iMdG~t~~~gaV~~v~~v~nPi~vAr~vl~~~~h~~L~G~gA~~fA~~~G~~~   66 (68)
T 1k2x_A           14 VMDGNTLKAGAVAGVSHLRNPVLAARLVMEQSPHVMMIGEGAENFAFARGMER   66 (68)
T ss_dssp             EEETTTCCEEEEEEESSCSCHHHHHHHHHHHSSCSEEEHHHHHHHHHTTTCCC
T ss_pred             EEECCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCC
T ss_conf             89779986136865155567899999998349984775377999999849963


No 72 
>>1ytl_A Acetyl-COA decarbonylase/synthase complex epsilon subunit 2; structural genomics, protein structure initiative; 1.80A {Archaeoglobus fulgidus} (A:)
Probab=20.73  E-value=53  Score=13.53  Aligned_cols=58  Identities=16%  Similarity=0.286  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHC
Q ss_conf             565777653310166787189996078025578899877306888862057899999830
Q gi|254780653|r  173 MQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQG  232 (400)
Q Consensus       173 ~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G  232 (400)
                      -...++.+-..+.+.+||.+  +-|.-+..--..+..|+++..--++.-.|+-..+..+|
T Consensus        21 ~~~~i~~~~~~l~~AkrPvi--i~G~~~~~a~~~l~~lae~~~~pv~~t~~g~~~~~~kg   78 (174)
T 1ytl_A           21 LLEKGKPVANMIKKAKRPLL--IVGPDMTDEMFERVKKFVEKDITVVATGSAITRFIDAG   78 (174)
T ss_dssp             ECCCHHHHHHHHHHCSSEEE--EECSCCCHHHHHHHHHHHTSSSEEEEETTHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHCCCCEE--EECCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCC
T ss_conf             98999999999997799589--96975316599999999863998897134244302367


No 73 
>>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} (A:1-123,A:316-361)
Probab=20.64  E-value=54  Score=13.52  Aligned_cols=79  Identities=16%  Similarity=0.217  Sum_probs=43.4

Q ss_pred             CHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHH--HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf             258999988989999988980999913778889847332247--888876431013354566631025566553136464
Q gi|254780653|r   35 DVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLF--KVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGG  112 (400)
Q Consensus        35 d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~--~v~~~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~  112 (400)
                      +.+|.--+=.+++.|.+.|.+|.+-+--|..-+=.|..|.-.  .+++.-+.+-..+|.+   .+.+...+.+..|++|.
T Consensus        12 ~ErRValtP~~v~~L~~~G~~V~VE~GAG~~a~fsDe~Y~~aGA~I~~~~e~~~~aDiIl---~Vk~P~~~ei~~lk~G~   88 (169)
T 1pjc_A           12 QEFRVGLSPSSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAWSREMVV---KVKEPLPAEYDLMQKDQ   88 (169)
T ss_dssp             TCCCCSCCHHHHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHHTSSEEE---CSSCCCGGGGGGCCTTC
T ss_pred             CCCEECCCHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHCCCEEECCHHHHHCCCCEE---EECCCCHHHHHHHCCCC
T ss_conf             981616789999999978999999689862479898999983999978878871278558---84589978986314675


Q ss_pred             EEEC
Q ss_conf             8982
Q gi|254780653|r  113 IILA  116 (400)
Q Consensus       113 ilLL  116 (400)
                      +++=
T Consensus        89 ~lis   92 (169)
T 1pjc_A           89 LLFT   92 (169)
T ss_dssp             EEEE
T ss_pred             EEEE
T ss_conf             8999


No 74 
>>1oao_C CODH, carbon monoxide dehydrogenase alpha subunit; electron transfer, oxidoreductase, acetyl-COA formation, WOOD/ljungdahl pathway; 1.90A {Moorella thermoacetica} (C:1-324)
Probab=20.58  E-value=54  Score=13.51  Aligned_cols=71  Identities=15%  Similarity=0.062  Sum_probs=54.6

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCC-EEEEEEECCHHHH-HHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCC
Q ss_conf             0003325565777653310166787-1899960780255-788998773068888620578999998301434
Q gi|254780653|r  166 PSYIGRAMQKELSMLESCFSESKKP-LVAIVGGSKVSTK-ITLLINLVKKVDKLVIGGGMANSFLVAQGMGVG  236 (400)
Q Consensus       166 ps~aG~l~ekEi~~L~~~l~~~~~P-~v~IiGGaKisdK-i~~i~~L~~k~D~iiigG~lantfL~A~G~~IG  236 (400)
                      ....||..+.+++.|-..+.+.+=| +++|+|.+.-++. ..+.+.|+++==-++..|-.+..|.++-+...|
T Consensus       130 ~~~~Gf~~d~ilr~lg~~iv~G~I~Gv~~ivGC~~~~~~~~~iakel~~~d~lVl~~GC~~~~~~~~g~~t~~  202 (324)
T 1oao_C          130 PPWTGFIGDPVVRRFGIKMVDWTIPGEAIILGRAKDSKALAKIVKELMGMGFMLFICDEAVEQLLEENVKLGI  202 (324)
T ss_dssp             TTCCSSCCHHHHHHTHHHHTTTSSCCEEEEEECCSCHHHHHHHHHHHHHTTCEEEEETHHHHHHHHTTCCCBG
T ss_pred             CCCCCCCCCHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCC
T ss_conf             8730666608899749751058777158996069984899999999986683787601089999870710277


No 75 
>>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} (A:180-307)
Probab=20.42  E-value=34  Score=14.81  Aligned_cols=48  Identities=15%  Similarity=0.078  Sum_probs=29.3

Q ss_pred             HHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHH
Q ss_conf             777653310166787189996078025578899877306888862057
Q gi|254780653|r  176 ELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGM  223 (400)
Q Consensus       176 Ei~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~l  223 (400)
                      ||+.+-+++.+.+||.+.+=+|+.-+.-...+..|.++..--++.-.+
T Consensus         1 ~i~~~~~~l~~A~rPvii~G~g~~~~~a~~~l~~lae~~g~pv~~t~~   48 (128)
T 1efp_A            1 EVAESDRPELTSARRVVSGGRGLGSKESFAIIEELADKLGAAVGASRA   48 (128)
T ss_dssp             EECCCCSCCTTTCSEEEEECGGGCSSSTTHHHHHHHHHHTCEEEECHH
T ss_pred             EEECCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCEEEECHH
T ss_conf             860134544245748998577446888999999999986994786076


No 76 
>>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} (A:427-523,A:579-641)
Probab=20.28  E-value=55  Score=13.47  Aligned_cols=76  Identities=14%  Similarity=0.030  Sum_probs=53.5

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC-CCCHHHHHHHHHHCCCCC
Q ss_conf             7258999988989999988980999913778889847332247888876431013354566-631025566553136464
Q gi|254780653|r   34 ADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIAESILHKNILFVN-DCIGSTLSQSIASLSEGG  112 (400)
Q Consensus        34 ~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l~~~l~~~V~fi~-d~~g~~~~~~i~~l~~g~  112 (400)
                      ....++...+.-|+.++++|-++++.++.         .-+...++++|... +.++..+. +.....-...++.++.|.
T Consensus        15 ~~~~k~~~~~~~i~~~~~~~~kvlIf~~~---------~~~~~~l~~~L~~~-~~~~~~~~g~~~~~~r~~~~~~f~~~~   84 (160)
T 1nkt_A           15 TEEAKYIAVVDDVAERYAKGQPVLIGTTS---------VERSEYLSRQFTKR-RIPHNVLNAKYHEQEATIIAVAGRRGG   84 (160)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCEEEEESC---------HHHHHHHHHHHHHT-TCCCEEECSSCHHHHHHHHHTTTSTTC
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCEEEEECH---------HHHHHHHHHHHHHC-CCCHHHHCCHHHHHHHHHHHHCCCCCE
T ss_conf             58999999999999999649977998401---------98899999999876-981532100104656767862789871


Q ss_pred             EEECCHH
Q ss_conf             8982424
Q gi|254780653|r  113 IILAENV  119 (400)
Q Consensus       113 ilLLEN~  119 (400)
                      |++.-++
T Consensus        85 vlv~t~~   91 (160)
T 1nkt_A           85 VTVATNM   91 (160)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
T ss_conf             8997223


Done!