Query         gi|254780653|ref|YP_003065066.1| phosphoglycerate kinase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 400
No_of_seqs    131 out of 2640
Neff          5.9 
Searched_HMMs 23785
Date          Tue May 31 18:12:29 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780653.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1php_A 3-phosphoglycerate kina 100.0       0       0 1032.1  35.2  394    2-399     1-394 (394)
  2 1v6s_A Phosphoglycerate kinase 100.0       0       0 1026.0  35.2  390    4-398     1-390 (390)
  3 1vpe_A Phosphoglycerate kinase 100.0       0       0 1015.9  35.2  393    5-399     3-396 (398)
  4 16pk_A PGK, 3-phosphoglycerate 100.0       0       0 1010.2  34.9  393    4-399     2-415 (415)
  5 1ltk_A Phosphoglycerate kinase 100.0       0       0 1007.7  32.8  397    1-399    11-425 (425)
  6 2wzb_A Phosphoglycerate kinase 100.0       0       0 1004.5  31.5  395    1-398     2-415 (416)
  7 1qpg_A PGK, 3-phosphoglycerate 100.0       0       0 1003.4  32.2  396    1-399     2-414 (415)
  8 2cun_A Phosphoglycerate kinase 100.0       0       0  998.7  31.0  388    4-399     1-401 (410)
  9 1zmr_A Phosphoglycerate kinase 100.0       0       0  985.1  33.3  382    2-399     1-384 (387)
 10 1fw8_A PGK P72, phosphoglycera 100.0       0       0  806.2  24.5  327   71-399     2-344 (416)
 11 1fw8_A PGK P72, phosphoglycera  99.7   8E-17 3.4E-21  127.5   7.6   64    5-69    351-415 (416)
 12 1e0t_A Pyruvate kinase, PK; ph  92.3    0.44 1.8E-05   26.0   6.8  311   42-374    16-399 (470)
 13 2e28_A Pyruvate kinase, PK; al  68.5     1.4 5.8E-05   22.8   1.1  312   42-377    17-405 (587)
 14 1yj5_A 5' polynucleotide kinas  67.8     1.3 5.3E-05   23.0   0.8  165   41-220    58-255 (383)
 15 1yad_A Regulatory protein TENI  66.4     6.5 0.00028   18.4   9.1  163   32-224    21-196 (221)
 16 1kyq_A Met8P, siroheme biosynt  66.3     3.5 0.00015   20.2   2.8   42    5-61      3-44  (274)
 17 3hqn_D Pyruvate kinase, PK; TI  66.2     3.7 0.00016   20.0   2.9  328   23-375    11-423 (499)
 18 3dfz_A SIRC, precorrin-2 dehyd  65.3     3.4 0.00014   20.2   2.6   35   11-60     27-61  (223)
 19 1fmt_A Methionyl-tRNA FMet for  62.6     7.7 0.00032   18.0   6.4   70   40-111    13-83  (314)
 20 2ap9_A NAG kinase, acetylgluta  55.6      10 0.00042   17.2   3.7   48   12-66     22-69  (299)
 21 2j28_9 Signal recognition part  55.4      10 0.00043   17.2  10.6  155   54-235    99-269 (430)
 22 3gg8_A Pyruvate kinase; malari  54.3     7.4 0.00031   18.1   2.7  311   42-371    50-435 (511)
 23 2p65_A Hypothetical protein PF  53.9      11 0.00045   17.0   6.1  135  165-312    21-171 (187)
 24 1vb3_A Threonine synthase; PLP  52.8      11 0.00045   17.1   3.4   24  229-252   260-283 (428)
 25 3ksu_A 3-oxoacyl-acyl carrier   52.5      11 0.00048   16.9   5.7   68   11-99      7-75  (262)
 26 2ivn_A O-sialoglycoprotein end  52.2     9.3 0.00039   17.5   3.0   54   36-95     45-107 (330)
 27 3gr4_A Pyruvate kinase isozyme  52.2     4.1 0.00017   19.8   1.1  317   42-377    76-475 (550)
 28 2v5h_A Acetylglutamate kinase;  50.4      12 0.00051   16.7   3.8   48   11-65     45-92  (321)
 29 3f9r_A Phosphomannomutase; try  48.7      10 0.00042   17.2   2.7   24   40-65     24-47  (246)
 30 3kwp_A Predicted methyltransfe  48.3      13 0.00055   16.5   6.2   25   41-65     76-100 (296)
 31 2w9h_A DHFR, dihydrofolate red  47.6      13 0.00057   16.4   3.4   24  192-221    90-113 (159)
 32 1f2t_B RAD50 ABC-ATPase; DNA d  47.4      13 0.00056   16.4   3.2   33  309-345    79-111 (148)
 33 1gs5_A Acetylglutamate kinase;  47.1      14 0.00058   16.4   3.4   36   32-67     13-48  (258)
 34 2bln_A Protein YFBG; transfera  46.0      14  0.0006   16.3   6.2   71   41-116    11-82  (305)
 35 3ma8_A Pyruvate kinase; parasi  45.6     7.9 0.00033   17.9   1.8  306   42-371    66-458 (534)
 36 3e70_C DPA, signal recognition  44.6      15 0.00063   16.1   8.5  125   71-219   142-275 (328)
 37 2zos_A MPGP, mannosyl-3-phosph  43.9     4.1 0.00017   19.7   0.1   45   30-82     10-54  (249)
 38 1pjq_A CYSG, siroheme synthase  43.2      16 0.00066   16.0   3.6   36   11-61      8-43  (457)
 39 3khd_A Pyruvate kinase; malari  43.2      11 0.00046   17.0   2.2  303   42-367    60-440 (520)
 40 1xpj_A Hypothetical protein; s  42.9      16 0.00067   15.9   4.1   30   37-66     24-53  (126)
 41 3k35_A Mono-ADP-ribosyltransfe  41.8      16 0.00069   15.8   2.9   57  188-263   181-237 (318)
 42 1ii8_B RAD50 ABC-ATPase; MRE11  41.4      17  0.0007   15.8   3.0   44  307-354   103-146 (174)
 43 3ctl_A D-allulose-6-phosphate   40.8      17 0.00072   15.7   4.6   78  179-271    98-177 (231)
 44 2fpr_A Histidine biosynthesis   40.8      17 0.00072   15.7   4.1   46   40-86     45-91  (176)
 45 3en9_A Glycoprotease, O-sialog  39.8      18 0.00074   15.6   5.4   34  286-320   322-356 (540)
 46 3ix9_A Dihydrofolate reductase  39.8      15 0.00065   16.0   2.5   25  191-221   116-140 (190)
 47 1wr8_A Phosphoglycolate phosph  39.7      12  0.0005   16.7   2.0   34   30-65     11-46  (231)
 48 3niw_A Haloacid dehalogenase-l  38.6      16 0.00068   15.9   2.5   34   30-65     13-48  (279)
 49 1i24_A Sulfolipid biosynthesis  38.2      19 0.00079   15.5   6.2   96    4-116     1-107 (404)
 50 2w3w_A Dihydrofolate reductase  37.4      16 0.00065   16.0   2.2   24  191-220    98-121 (167)
 51 3eno_A Putative O-sialoglycopr  37.3      19 0.00081   15.4   3.4   59   37-96     51-113 (334)
 52 2yyb_A Hypothetical protein TT  36.7      16 0.00068   15.9   2.2   46   41-91     45-92  (242)
 53 2wdc_A SOXB, sulfur oxidation   35.7      20 0.00086   15.2   3.9   26   39-64    240-266 (562)
 54 3hno_A Pyrophosphate-dependent  35.5      21 0.00087   15.2   3.3   29  145-173   114-158 (419)
 55 1vdr_A DHFR, dihydrofolate red  35.5      17  0.0007   15.8   2.1   24  191-220    96-119 (162)
 56 3dau_A Dihydrofolate reductase  34.8      18 0.00074   15.7   2.2   26  190-221    89-114 (159)
 57 2fhx_A SPM-1; metallo-beta-lac  33.2      18 0.00077   15.5   2.0   38   25-62     31-77  (246)
 58 1fmc_A 7 alpha-hydroxysteroid   32.8      23 0.00096   14.9   6.7   63    5-92      2-64  (255)
 59 2j5v_A Glutamate 5-kinase; pro  32.8      23 0.00096   14.9   4.8  212   15-238     4-254 (367)
 60 3inp_A D-ribulose-phosphate 3-  32.0      23 0.00098   14.9   3.7   78  180-272   127-206 (246)
 61 3myu_A High affinity transport  31.7      13 0.00054   16.5   1.1   43   74-121    27-75  (344)
 62 3ek6_A Uridylate kinase; UMPK   31.6      24   0.001   14.8   6.8   53   12-64      6-59  (243)
 63 2pju_A Propionate catabolism o  31.4      24   0.001   14.8   6.5  147  191-385    40-188 (225)
 64 2bty_A Acetylglutamate kinase;  31.2      24   0.001   14.8   4.0   48   11-65     17-64  (282)
 65 3jwk_A Dihydrofolate reductase  29.5      25   0.001   14.7   2.2   25  191-221    98-122 (168)
 66 1rpx_A Protein (ribulose-phosp  29.2      26  0.0011   14.5   4.1   77  180-271   111-189 (230)
 67 1df7_A DHFR, dihydrofolate red  28.5      20 0.00085   15.3   1.6   25  191-221    90-114 (159)
 68 1ecf_A Glutamine phosphoribosy  28.4      27  0.0011   14.5   4.4   14  104-117   220-233 (504)
 69 1bia_A BIRA bifunctional prote  28.1      18 0.00078   15.5   1.4  169   41-224    35-208 (321)
 70 1j8m_F SRP54, signal recogniti  27.7      28  0.0012   14.4   8.7  128   71-220   111-247 (297)
 71 2z3y_A Lysine-specific histone  27.6      26  0.0011   14.6   2.0   29   41-69    118-146 (662)
 72 1z9d_A Uridylate kinase, UK, U  27.5      28  0.0012   14.4   6.0   49   16-64      8-57  (252)
 73 3dma_A Exopolyphosphatase-rela  27.3      28  0.0012   14.3   3.5   50   40-93      8-57  (343)
 74 3mpo_A Predicted hydrolase of   27.3      28  0.0012   14.3   3.9   45   30-82     13-59  (279)
 75 2rd5_A Acetylglutamate kinase-  26.5      29  0.0012   14.2   4.6   48   11-65     32-79  (298)
 76 1vl8_A Gluconate 5-dehydrogena  26.4      29  0.0012   14.2   6.7   64    7-93     13-76  (267)
 77 1tqj_A Ribulose-phosphate 3-ep  25.9      30  0.0013   14.2   4.1   77  180-271   105-183 (230)
 78 3gve_A YFKN protein; alpha-bet  25.8      30  0.0013   14.2   4.9   21   37-60     41-61  (341)
 79 2obb_A Hypothetical protein; s  25.6      30  0.0013   14.1   2.9   39   39-85     26-64  (142)
 80 3nwy_A Uridylate kinase; allos  25.3      31  0.0013   14.1   5.9   52   12-63     46-98  (281)
 81 2ffh_A Protein (FFH); SRP54, s  25.3      31  0.0013   14.1   9.0  154   54-235    98-267 (425)
 82 3ia4_A Dihydrofolate reductase  25.1      22 0.00093   15.0   1.3   25  191-221    92-116 (162)
 83 3dm5_A SRP54, signal recogniti  25.1      31  0.0013   14.1   7.8  155   53-235    99-269 (443)
 84 3n0l_A Serine hydroxymethyltra  24.9      22 0.00095   15.0   1.3  100  118-218    90-195 (417)
 85 1rlm_A Phosphatase; HAD family  24.5      32  0.0013   14.0   2.9   23   41-65     25-47  (271)
 86 3gdg_A Probable NADP-dependent  24.2      32  0.0013   14.0   5.4   72    4-97      9-83  (267)
 87 1ma3_A SIR2-AF2, transcription  24.2      30  0.0013   14.2   1.8   56  189-263   159-214 (253)
 88 3gbx_A Serine hydroxymethyltra  24.0      19 0.00078   15.5   0.7  101  118-219    95-201 (420)
 89 1nmo_A Hypothetical protein YB  23.4      33  0.0014   13.9   2.2   41  190-234   166-207 (247)
 90 2pnf_A 3-oxoacyl-[acyl-carrier  23.3      33  0.0014   13.9   5.9   63   12-97      4-67  (248)
 91 1juv_A DHFR, dihydrofolate red  22.9      34  0.0014   13.8   2.5   25  191-221   123-147 (193)
 92 3cse_A Dihydrofolate reductase  22.5      27  0.0011   14.5   1.3   26  191-222   117-142 (227)
 93 2iz6_A Molybdenum cofactor car  22.2      35  0.0015   13.7   4.1   52  186-237    10-75  (176)
 94 3g3d_A UMP synthase, uridine 5  22.0      32  0.0013   14.0   1.6   60   75-138    68-132 (312)
 95 1apy_A Aspartylglucosaminidase  21.5      36  0.0015   13.6   6.8   69  189-262    74-142 (162)
 96 1ltq_A Polynucleotide kinase;   21.4      36  0.0015   13.6   5.1   12  312-323   205-216 (301)
 97 3cbg_A O-methyltransferase; cy  21.2      16 0.00067   16.0  -0.1   55  201-255    58-120 (232)
 98 1jx7_A Hypothetical protein YC  20.8      37  0.0016   13.5   1.8   58  246-317    59-116 (117)
 99 2q5c_A NTRC family transcripti  20.8      37  0.0016   13.5   1.8  150  191-386    29-178 (196)
100 1z7e_A Protein aRNA; rossmann   20.7      38  0.0016   13.5   6.0   21  247-267   412-432 (660)
101 3lu1_A WBGU; rossman fold, epi  20.6      38  0.0016   13.5   3.0   82    3-104    26-109 (364)
102 1dct_A Protein (modification m  20.6      38  0.0016   13.5   2.2   22  102-124    95-116 (324)
103 3dfr_A Dihydrofolate reductase  20.4      38  0.0016   13.5   1.9   25  191-221    93-117 (162)

No 1  
>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus stearothermophilus} SCOP: c.86.1.1
Probab=100.00  E-value=0  Score=1032.15  Aligned_cols=394  Identities=41%  Similarity=0.697  Sum_probs=385.6

Q ss_pred             CCCCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHH
Q ss_conf             88877101001599689998201671318577725899998898999998898099991377888984733224788887
Q gi|254780653|r    2 SRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSI   81 (400)
Q Consensus         2 ~~~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~   81 (400)
                      |++|||+|+ |++||+||||+|||||+++|+|+|++||++++|||++|+++||||||+||||||+|++++++||+||+++
T Consensus         1 M~~ktl~d~-d~~~K~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvvi~sH~GRP~g~~~~~~SL~~~a~~   79 (394)
T 1php_A            1 MNKKTIRDV-DVRGKRVFCRVDFNVPMEQGAITDDTRIRAALPTIRYLIEHGAKVILASHLGRPKGKVVEELRLDAVAKR   79 (394)
T ss_dssp             CCBCBGGGS-CCTTCEEEEECCCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCSSCCGGGCSHHHHHH
T ss_pred             CCCCCCCCC-CCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHH
T ss_conf             997840003-8789989999515778529968976899999999999997899899986888999987864575999999


Q ss_pred             HHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCHHHHHHHHCCCCCEEEECCHHHHCCCCCCEEEC
Q ss_conf             64310133545666310255665531364648982424303432100024665312436424754404401137633302
Q gi|254780653|r   82 AESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGL  161 (400)
Q Consensus        82 l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n~~~f~k~La~laDiyVnDAF~~aHR~haS~~gi  161 (400)
                      |+++|+++|.|++|++|+.+++++++|++|+|+||||+|||+||++|+++|+++||++||+|||||||||||+|||++|+
T Consensus        80 L~~~l~~~v~f~~d~~g~~~~~~i~~l~~g~i~lLENvRf~~~E~~nd~~fak~La~l~DiyVNDAF~~sHR~haS~~gi  159 (394)
T 1php_A           80 LGELLERPVAKTNEAVGDEVKAAVDRLNEGDVLLLENVRFYPGEEKNDPELAKAFAELADLYVNDAFGAAHRAHASTEGI  159 (394)
T ss_dssp             HHHHHTSCCEECSCSSSHHHHHHHHTCCTTCEEECCCGGGSHHHHHTCHHHHHHHHTTCSEEEECCGGGTTSCCTTTTGG
T ss_pred             HHHHHCCCCCEECCCCCHHHHHHHHHCCCCCEEEHHHHHHCCCCHHCHHHHHHHHHHHCCEEEECCCCHHHCCCCCHHHH
T ss_conf             99864556410013356779999961688868633757757531105199999987538899865400121148531214


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             33210003325565777653310166787189996078025578899877306888862057899999830143433331
Q gi|254780653|r  162 SHLLPSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQ  241 (400)
Q Consensus       162 ~~~lps~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~Sl~e  241 (400)
                      |+++|||||++||+|+++|++++++|+||+++||||||+||||++|++|++++|+|++||+||||||+|+|++||+|++|
T Consensus       160 ~~~lps~aG~l~ekEl~~L~k~l~~p~rP~~aIiGGaKisdKi~~l~~l~~k~D~iiigG~mantfL~a~G~~iG~sl~e  239 (394)
T 1php_A          160 AHYLPAVAGFLMEKELEVLGKALSNPDRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLE  239 (394)
T ss_dssp             GGTSCEEECHHHHHHHHHHHHHHHSCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTHHHHHHHHTTCCCTTSCCC
T ss_pred             HHHCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHCCCCCCCCHHH
T ss_conf             44154777878999999999998388997699971573654899999997532415764399999999859976721134


Q ss_pred             CCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             00001356889987530245543035411343232333310253212013345765200356777640577679997662
Q gi|254780653|r  242 RDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPL  321 (400)
Q Consensus       242 ~~~~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~  321 (400)
                      +++++.++++++++++++++|++|+|++|+.++....+.++++++++|++|+++||||+|++.|+++|.+|+||||||||
T Consensus       240 ~~~~~~a~~i~~~~~~~~~~i~lP~D~v~~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~Ti~~~~~~I~~aktI~wNGP~  319 (394)
T 1php_A          240 EDKIELAKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRDVIRESKLVVWNGPM  319 (394)
T ss_dssp             GGGHHHHHHHHHHHHHHTCEEECCSEEEEESSSSTTSCEEEEEGGGCCTTCEEEEECHHHHHHHHHHHHTCSEEEEESCS
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEHHHCCCCCEEEEECHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             55578999999988861985147851353103456566358642231468547873867899999864437889997782


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCHHHHHHCCC
Q ss_conf             532274365889999999986111488589974804699899848876864687507998998748998689884079
Q gi|254780653|r  322 GVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALSGH  399 (400)
Q Consensus       322 GvfE~~~F~~GT~~l~~~ia~~~~~~~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~~L~G~~LPgi~aL~~~  399 (400)
                      |+||+++|+.||.++++++++.   +++|||||||||++|++++|+.++|+||||||||||+||+|++||||+||++.
T Consensus       320 G~fE~~~F~~GT~~l~~~ia~s---~~a~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~~L~G~~LPgi~aL~~k  394 (394)
T 1php_A          320 GVFEMDAFAHGTKAIAEALAEA---LDTYSVIGGGDSAAAVEKFGLADKMDHISTGGGASLEFMEGKQLPGVVALEDK  394 (394)
T ss_dssp             SCTTSGGGCHHHHHHHHHHHHC---TTCEEEECSHHHHHHHHHTTCGGGSSEECSCTHHHHHHHTTCCCHHHHTSCBC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHCCCCCCCEEEECCHHHHHHHHCCCCCCHHHHHCCC
T ss_conf             5544661538999999999965---89859994738999999739867860896585999999879996368885069


No 2  
>1v6s_A Phosphoglycerate kinase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A
Probab=100.00  E-value=0  Score=1025.97  Aligned_cols=390  Identities=40%  Similarity=0.659  Sum_probs=382.0

Q ss_pred             CCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             87710100159968999820167131857772589999889899999889809999137788898473322478888764
Q gi|254780653|r    4 LRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIAE   83 (400)
Q Consensus         4 ~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l~   83 (400)
                      ||||+|+ |++||+||||+|||||++||+|+|++||++++|||++|+++||||||+||||||+|+ ++++||+||+++|+
T Consensus         1 mktl~d~-d~~~k~VlvRvD~NvPi~~g~I~dd~RI~~~lpTI~~l~~~~akvvi~SHlGRPkg~-~~~~SL~~va~~L~   78 (390)
T 1v6s_A            1 MRTLLDL-DPKGKRVLVRVDYNVPVQDGKVQDETRILESLPTLRHLLAGGASLVLLSHLGRPKGP-DPKYSLAPVGEALR   78 (390)
T ss_dssp             CCBGGGS-CCTTCEEEEECCCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCSSC-CGGGCSHHHHHHHH
T ss_pred             CCCHHCC-CCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC-CCCCCHHHHHHHHH
T ss_conf             9850106-878999999932466633997787489999999999999889989998058999998-97736899999999


Q ss_pred             HHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCHHHHHHHHCCCCCEEEECCHHHHCCCCCCEEECCC
Q ss_conf             31013354566631025566553136464898242430343210002466531243642475440440113763330233
Q gi|254780653|r   84 SILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSH  163 (400)
Q Consensus        84 ~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n~~~f~k~La~laDiyVnDAF~~aHR~haS~~gi~~  163 (400)
                      ++|+++|.|++|++++.+++++++|++|+|+||||+|||+||++|+++|+++||++||+|||||||||||+|||++|||+
T Consensus        79 ~~L~~~v~~~~~~~~~~~~~~i~~l~~g~I~LLENvRF~~gE~~nd~~f~~~La~l~DiyVnDAF~~aHR~haS~vgi~~  158 (390)
T 1v6s_A           79 AHLPEARFAPFPPGSEEARREAEALRPGEVLLLENVRFEPGEEKNDPELSARYARLGEAFVLDAFGSAHRAHASVVGVAR  158 (390)
T ss_dssp             HHCTTEEECCSCTTSHHHHHHHHTCCTTCEEECSCGGGSTTTTTTCHHHHHHHGGGCSEEEECCGGGTTSCCCCCCCGGG
T ss_pred             HHCCCCEEEECCCCCHHHHHHHHCCCCCCEEEEHHHHCCCCCCCCCHHHHHHHHHCCCEEEECHHHHHHHCCCCHHHHHH
T ss_conf             76387617521454177776764168887886332221552000799999877632668985325443212531112445


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             21000332556577765331016678718999607802557889987730688886205789999983014343333100
Q gi|254780653|r  164 LLPSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRD  243 (400)
Q Consensus       164 ~lps~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~Sl~e~~  243 (400)
                      ++|||||+|||+|+++|++++++|+||+++||||||+||||++|++|++++|+|++||+||||||+|+|++||+|++|++
T Consensus       159 ~lps~aG~l~ekEi~~L~~~l~~p~rP~~aIlGGaKisdKi~~i~~L~~k~D~IiigG~mAntFL~a~G~~iG~sl~e~~  238 (390)
T 1v6s_A          159 LLPAYAGFLMEKEVRALSRLLKDPERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEED  238 (390)
T ss_dssp             TSCEEECHHHHHHHHHHHTTTSSCCSSEEEEECCSCGGGTHHHHHHHGGGCSEEEECSTTHHHHHHHTTCBCTTCCCCGG
T ss_pred             HCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             35233308899999999999718899759998477477799999999986599997848999999975987676540000


Q ss_pred             CCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             00135688998753024554303541134323233331025321201334576520035677764057767999766253
Q gi|254780653|r  244 FSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGV  323 (400)
Q Consensus       244 ~~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~Gv  323 (400)
                      .++.++++++.+++.++++++|+|++|..++..+.++..+++++||++|+++||||+|++.|+++|++|+|||||||||+
T Consensus       239 ~~~~~~~i~~~a~~~~~~~~lp~d~~~~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~Ti~~~~~~I~~aktI~wNGP~Gv  318 (390)
T 1v6s_A          239 RLDLAKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFARALEGARTVFWNGPMGV  318 (390)
T ss_dssp             GHHHHHHHHHHHHHHTCEEECCSEEEEESSCCTTCCCEEEETTBCCTTCEEEEECHHHHHHHHHHTTTCSEEEEESCSSC
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             57899999999876167767870100132236775324564322043320001483679999987505675688456444


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCHHHHHHCC
Q ss_conf             227436588999999998611148858997480469989984887686468750799899874899868988407
Q gi|254780653|r  324 FEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALSG  398 (400)
Q Consensus       324 fE~~~F~~GT~~l~~~ia~~~~~~~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~~L~G~~LPgi~aL~~  398 (400)
                      ||+++|+.||.++++++++   .++++||||||||++|++++|+.++|+||||||||+|+||+|++||||+||+.
T Consensus       319 fE~~~F~~GT~~i~~~ia~---~~~a~sivGGGdT~~ai~~~g~~~~~~hvSTgGGA~Le~L~G~~LPgi~aL~~  390 (390)
T 1v6s_A          319 FEVPPFDEGTLAVGQAIAA---LEGAFTVVGGGDSVAAVNRLGLKERFGHVSTGGGASLEFLEKGTLPGLEVLEG  390 (390)
T ss_dssp             TTSTTTTHHHHHHHHHHHT---CSSCEEEEESHHHHHHHHTTTCGGGSSEECCSSSHHHHHHHHSCCHHHHTTCC
T ss_pred             CCCCCHHHHHHHHHHHHHH---CCCCEEEEECHHHHHHHHHCCCCCCCEEEECCHHHHHHHHCCCCCCCCHHCCC
T ss_conf             1357341689999999985---58997999388999999974986786189887899999977999652212059


No 3  
>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability, crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga maritima} SCOP: c.86.1.1
Probab=100.00  E-value=0  Score=1015.86  Aligned_cols=393  Identities=40%  Similarity=0.696  Sum_probs=381.9

Q ss_pred             CCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             77101001599689998201671318577725899998898999998898099991377888984733224788887643
Q gi|254780653|r    5 RTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIAES   84 (400)
Q Consensus         5 ~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l~~   84 (400)
                      .||+|+ |++||+||||+|||||+++|+|+|++||++++|||++|+++||||||+||||||+|++++++||+||+++|++
T Consensus         3 ltl~d~-~l~gK~VlvRvD~NvPi~~g~I~d~~RI~~~lpTI~~Ll~~~akvvi~SH~GRPkgk~~~~~SL~~va~~L~~   81 (398)
T 1vpe_A            3 MTIRDV-DLKGKRVIMRVDFNVPVKDGVVQDDTRIRAALPTIKYALEQGAKVILLSHLGRPKGEPSPEFSLAPVAKRLSE   81 (398)
T ss_dssp             CBGGGS-CCTTCEEEEECCCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCSSCCGGGCSHHHHHHHHH
T ss_pred             CCHHCC-CCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             763004-8579989999334676209918972899999999999998899899985888999987876588999999998


Q ss_pred             HCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCHHHHHHHHCCCCCEEEECCHHHHCCCCCCEEECCCC
Q ss_conf             10133545666310255665531364648982424303432100024665312436424754404401137633302332
Q gi|254780653|r   85 ILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHL  164 (400)
Q Consensus        85 ~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n~~~f~k~La~laDiyVnDAF~~aHR~haS~~gi~~~  164 (400)
                      +|+++|.|++||+++.++++++++++|+|+||||+|||+||++|+++|+++||++||+|||||||||||+|||++|+|++
T Consensus        82 ~l~~~V~fi~d~~g~~~~~~i~~l~~g~i~LLENvRf~~~E~~n~~~f~k~La~laDiyVnDAF~~sHR~haS~~gi~~~  161 (398)
T 1vpe_A           82 LLGKEVKFVPAVVGDEVKKAVEELKEGEVLLLENTRFHPGETKNDPELAKFWASLADIHVNDAFGTAHRAHASNVGIAQF  161 (398)
T ss_dssp             HHTSCCEEESCSSSHHHHHHHHTCCTTEEEEECCGGGSTHHHHTCHHHHHHHHTTCSEEEECCGGGTTSCCTTTTGGGGT
T ss_pred             HHCCCEEEEECCCCHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCHHHHHHH
T ss_conf             74885687513576678998734686768852423305065541899999873058877734045442037542506676


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             10003325565777653310166787189996078025578899877306888862057899999830143433331000
Q gi|254780653|r  165 LPSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDF  244 (400)
Q Consensus       165 lps~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~Sl~e~~~  244 (400)
                      +|||+|++||+|+++|++++.+|+||+++|+||||+||||++|++|++++|+|++||+||||||+|+|++||+|++|+++
T Consensus       162 lps~aG~l~ekEi~~l~~~~~~~~~P~~aIlGGaKisdKi~ll~~l~~k~D~iiigG~~antfL~a~G~~iG~s~~e~~~  241 (398)
T 1vpe_A          162 IPSVAGFLMEKEIKFLSKVTYNPEKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDK  241 (398)
T ss_dssp             SCEEECHHHHHHHHHHHHHHHCCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTTHHHHHHHTSCCCTTSCCCGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCEEEECCHHHHHHHHHCCCCCCCCCCCHHH
T ss_conf             45565799999999974100178997699995353304999999999860420226299999999779876754355124


Q ss_pred             CHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCC-CEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             01356889987530245543035411343232333310253-21201334576520035677764057767999766253
Q gi|254780653|r  245 SDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSA-QSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGV  323 (400)
Q Consensus       245 ~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~~~~~~-~~i~~~~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~Gv  323 (400)
                      ++.++++++.+++++++|++|+|++|+.+++...+...... +.+|++|+++||||+|++.|+++|++|+|||||||||+
T Consensus       242 ~~~~~~i~~~a~~~~~~i~lp~d~~v~~~~~~~~~~~~~~~~~~i~~~~~ilDIG~~Ti~~~~~~I~~a~tI~WNGP~G~  321 (398)
T 1vpe_A          242 IDLAKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFKQKLSDAKTVVWNGPMGV  321 (398)
T ss_dssp             HHHHHHHHHHHHHTTCEEECCSEEEEESSCSTTCCCEEEETTTCCCTTCEEEEECHHHHHHHHHHHTTCSEEEEESCSSC
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCEEECCCCCCCCCCEECCCCCHHHHHHHHHHHHCCEEEEECCCCC
T ss_conf             78999999977752986678842798534567777227532247887762005670378999999987798999667244


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCHHHHHHCCC
Q ss_conf             2274365889999999986111488589974804699899848876864687507998998748998689884079
Q gi|254780653|r  324 FEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALSGH  399 (400)
Q Consensus       324 fE~~~F~~GT~~l~~~ia~~~~~~~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~~L~G~~LPgi~aL~~~  399 (400)
                      ||+++|+.||.+++++++++++ +++|||||||||++|++++|+.++|+||||||||+|+||+|++||||+||+..
T Consensus       322 fE~~~F~~GT~~l~~~ia~~~~-~~~~sivGGGdT~aai~~~g~~~~f~hvSTgGGA~Le~L~G~~LPgi~aL~~~  396 (398)
T 1vpe_A          322 FEIDDFAEGTKQVALAIAALTE-KGAITVVGGGDSAAAVNKFGLEDKFSHVSTGGGASLEFLEGKELPGIASMRIK  396 (398)
T ss_dssp             TTSGGGCHHHHHHHHHHHHHHH-TTCEEEEESHHHHHHHHHTTCGGGSSEEESCHHHHHHHHTSSCCHHHHTSCBC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHC-CCCEEEEECHHHHHHHHHCCCCCCCEEEECCHHHHHHHHCCCCCHHHHHHHHC
T ss_conf             2466351799999999998723-89989991879999999749867970896777999999879996089998635


No 4  
>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis, transferase, bisubstrate, analog; HET: BIS EPE; 1.60A {Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A*
Probab=100.00  E-value=0  Score=1010.16  Aligned_cols=393  Identities=37%  Similarity=0.666  Sum_probs=379.1

Q ss_pred             CCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC----------------
Q ss_conf             8771010015996899982016713185777258999988989999988980999913778889----------------
Q gi|254780653|r    4 LRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQS----------------   67 (400)
Q Consensus         4 ~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg----------------   67 (400)
                      .|||+|+ |++|||||||||||||+++|+|+|++||++++|||+||+++||||||+||||||||                
T Consensus         2 kktl~d~-d~~~K~VlvRvD~NvPi~~g~I~D~~RI~~~lpTI~~ll~~gakvvl~SHlGRPkg~~~~~~~~~~~~~~~~   80 (415)
T 16pk_A            2 KKSINEC-DLKGKKVLIRVDFNVPVKNGKITNDYRIRSALPTLKKVLTEGGSCVLMSHLGRPKGIPMAQAGKIRSTGGVP   80 (415)
T ss_dssp             BCBGGGS-CCTTCEEEEEECCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCCBCGGGHHHHHHTTCCT
T ss_pred             CCCCCCC-CCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9740014-888998999925676563996897789999999999999789979998078898987655322222233322


Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCH----HHHHHHHCCCCCEE
Q ss_conf             84733224788887643101335456663102556655313646489824243034321000----24665312436424
Q gi|254780653|r   68 KSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEERND----PDFVRMLSRNGDFY  143 (400)
Q Consensus        68 ~~~~~~Sl~~v~~~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n~----~~f~k~La~laDiy  143 (400)
                      ++++++||+||+++|+++|+++|.|++|+++.  .+++++|++|+|+||||+|||+||++|+    +.|+|+||++||+|
T Consensus        81 ~~~~~~SL~pva~~L~~~l~~~V~f~~d~~~~--~~~i~~l~~g~I~LLEN~RF~~~E~~~~~~~~~~fak~La~laDiy  158 (415)
T 16pk_A           81 GFQQKATLKPVAKRLSELLLRPVTFAPDCLNA--ADVVSKMSPGDVVLLENVRFYKEEGSKKAKDREAMAKILASYGDVY  158 (415)
T ss_dssp             TCCGGGCSHHHHHHHHHHHTSCCEEESCTTSC--HHHHHTCCTTCEEEECCGGGBGGGGCSSHHHHHHHHHHHHTTCSEE
T ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHH--HHHHHCCCCCCEEEECCCCEECCCCCCCCCCHHHHHHHHHHHCCEE
T ss_conf             36822472889999999858560003210378--9999627988799852210412566322234799999997528898


Q ss_pred             EECCHHHHCCCCCCEEECCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHH
Q ss_conf             7544044011376333023321000-332556577765331016678718999607802557889987730688886205
Q gi|254780653|r  144 INDAFSVSHRAHASITGLSHLLPSY-IGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGG  222 (400)
Q Consensus       144 VnDAF~~aHR~haS~~gi~~~lps~-aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~  222 (400)
                      ||||||||||+|||++|||+++|+| +|+|||+|+++|++++++|+||+++||||||++|||++|++|++++|+|++||+
T Consensus       159 VNDAFg~aHR~haS~~gi~~~lps~~gg~L~ekEl~~L~~~l~~p~rP~vaIlGGaKisdKi~vl~~l~~k~D~iiigG~  238 (415)
T 16pk_A          159 ISDAFGTAHRDSATMTGIPKILGNGAAGYLMEKEISYFAKVLGNPPRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGA  238 (415)
T ss_dssp             EEECGGGTTSCCTTTTHHHHHHTCCEECHHHHHHHHHHHHHHSCCCSSEEEEECSSCSGGGHHHHHHHGGGCSEEEECTT
T ss_pred             EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEECCH
T ss_conf             72574532578754051578865420168999999999999709999848996056634489999999974582454518


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHH
Q ss_conf             78999998301434333310000135688998753024554303541134323233331025321201334576520035
Q gi|254780653|r  223 MANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTV  302 (400)
Q Consensus       223 lantfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~Ti  302 (400)
                      ||||||+|+|++||+|++|+++++.++++++.+++++++|++|+|++|+.++....+..+.+.+++|++|+++||||+|+
T Consensus       239 mantfL~a~G~~iG~sl~e~~~~~~a~~i~~~~~~~~~~i~lp~d~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~Ti  318 (415)
T 16pk_A          239 MAYTFLKAQGYSIGKSKCEESKLEFARSLLKKAEDRKVQVILPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTI  318 (415)
T ss_dssp             HHHHHHHHHTCCCTTCCCCGGGHHHHHHHHHHHHHTTCEEECCSSEEEESSSSCCSSCEECSSSCCCTTCEEEEECHHHH
T ss_pred             HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCEECCCCCCCCCCCEECCCCCCCCCCHHHCCCHHHH
T ss_conf             99999998198556542315668999999988886492262662301134556555420023335578724320343555


Q ss_pred             HHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHH
Q ss_conf             67776405776799976625322743658899999999861114885899748046998998488768646875079989
Q gi|254780653|r  303 EYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFL  382 (400)
Q Consensus       303 ~~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~~~~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L  382 (400)
                      +.|+++|.+|+|||||||||+||.++|+.||.+|+++++++++++++|||||||||++|++++|+.++|+||||||||||
T Consensus       319 ~~~~~~i~~a~tI~wNGP~GvfE~~~F~~GT~~l~~aia~~~~~~~a~sivGGGdT~aai~~~g~~~~~~hvSTGGGA~L  398 (415)
T 16pk_A          319 EKYVQTIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGTHEHGLMSIIGGGDSASAAELSGEAKRMSHVSTGGGASL  398 (415)
T ss_dssp             HHHHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHHHCCEEEECSHHHHHHHHHTTCTTTSSEECSCHHHHH
T ss_pred             HHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCCCCEEECCHHHHH
T ss_conf             77899885478999978714543651528999999999984234899899848799999997398568827976889999


Q ss_pred             HHHCCCCCHHHHHHCCC
Q ss_conf             98748998689884079
Q gi|254780653|r  383 EWLEGKDLPGIVALSGH  399 (400)
Q Consensus       383 ~~L~G~~LPgi~aL~~~  399 (400)
                      +||+|++||||+||++.
T Consensus       399 ~~L~G~~LPgi~aL~~k  415 (415)
T 16pk_A          399 ELLEGKTLPGVTVLDDK  415 (415)
T ss_dssp             HHHTTCCCHHHHTSCBC
T ss_pred             HHHCCCCCCHHHHHCCC
T ss_conf             99879996346774069


No 5  
>1ltk_A Phosphoglycerate kinase; PGK, glycolysis, glycerol, open conformation, ADP complex, selenomethionine, transferase; HET: AMP; 3.00A {Plasmodium falciparum} SCOP: c.86.1.1
Probab=100.00  E-value=0  Score=1007.67  Aligned_cols=397  Identities=39%  Similarity=0.650  Sum_probs=379.2

Q ss_pred             CCCCCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCC-EEEEEECCCCCCCCCCCCCCHHHHH
Q ss_conf             988877101001599689998201671318577725899998898999998898-0999913778889847332247888
Q gi|254780653|r    1 MSRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKA-KVVIFSHLGRPQSKSDKDCSLFKVV   79 (400)
Q Consensus         1 M~~~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~a-kvii~SH~GRPkg~~~~~~Sl~~v~   79 (400)
                      |.+..||+|+.|++||+||||||||||+++|+|+|++||++++|||++|+++|| ||||+||||||+|+.++++||+||+
T Consensus        11 m~~~~ti~d~~dl~gK~VlvRvD~NvPi~~g~I~Dd~RI~~~lpTI~~L~~~ga~kvil~SHlGRP~g~~~~~~SL~pva   90 (425)
T 1ltk_A           11 LGNKLSISDLKDIKNKKVLVRVDFNVPIENGIIKDTNRITATLPTINHLKKEGASKIILISHCGRPDGLRNEKYTLKPVA   90 (425)
T ss_dssp             SSSCCBSSSCCCCTTCEEEEEECCCCCEETTEESCTHHHHHTHHHHHHHHTTCCSEEEEECCCSCCTTSCCGGGCSHHHH
T ss_pred             CCCCCEECCCCCCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHH
T ss_conf             04676101022258998999942146523993897899999999999999879982999818889999889984569999


Q ss_pred             HHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCC---------------HHHHHHHHCCCCCEEE
Q ss_conf             8764310133545666310255665531364648982424303432100---------------0246653124364247
Q gi|254780653|r   80 SIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEERN---------------DPDFVRMLSRNGDFYI  144 (400)
Q Consensus        80 ~~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n---------------~~~f~k~La~laDiyV  144 (400)
                      ++|+++|+++|.|++||+|+.++++++.|++|+|+||||+|||+||+.|               ++.|+|+||++||+||
T Consensus        91 ~~L~~~L~~~V~fv~d~~g~~~~~~i~~l~~g~I~LLENvRF~~eE~~n~~~~~~~~~~~~~~~~~~f~k~LA~laDvyV  170 (425)
T 1ltk_A           91 ETLKGLLGEEVLFLNDCVGKEVEDKINAAKENSVILLENLRFHIEEEGKGVDANGNKVKANKEDVEKFQNDLTKLADVFI  170 (425)
T ss_dssp             HHHHHHHTSCCEECSCSSSHHHHHHHHSSCTTEEEECCCGGGSHHHHSEEECTTCCEEECCHHHHHHHHHHHHTSCSEEE
T ss_pred             HHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCEEECCHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCEEE
T ss_conf             99999878776113666672677775327988789860111020000256420010110112337999999864167876


Q ss_pred             ECCHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHH
Q ss_conf             54404401137633302332100033255657776533101667871899960780255788998773068888620578
Q gi|254780653|r  145 NDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMA  224 (400)
Q Consensus       145 nDAF~~aHR~haS~~gi~~~lps~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~la  224 (400)
                      |||||||||+|||++||+.+ |+|+|+|||+|+++|++++++|+||+++||||||++|||++|++|++++|++++||+||
T Consensus       171 NDAF~~aHR~haS~~gi~~~-~~~aG~L~ekEi~~L~k~l~~~~~P~vaIlGGaKvsdKi~~i~~l~~k~D~iiigG~~a  249 (425)
T 1ltk_A          171 NDAFGTAHRAHSSMVGVKLN-VKASGFLMKKELEYFSKALENPQRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGGMA  249 (425)
T ss_dssp             EECTTSCSSCCHHHHCCCCS-EEEECHHHHHHHHHHHHHHTSCCSSEEEEEECSCSGGGHHHHHHHHTTCSEEEEESSHH
T ss_pred             ECCCCCCCCCCCCEECCCCC-CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCEEEECCHHH
T ss_conf             14554345566532210001-35430469999999999984878884699837741207999998886247289642799


Q ss_pred             HHHHH-HHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCC-CCCCCCEECCCCCCCCCCCHHH
Q ss_conf             99999-830143433331000013568899875302455430354113432323333-1025321201334576520035
Q gi|254780653|r  225 NSFLV-AQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPT-QVVSAQSVPLDSIILDVGFKTV  302 (400)
Q Consensus       225 ntfL~-A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~-~~~~~~~i~~~~~i~DIGp~Ti  302 (400)
                      ||||+ ++|++||+|++|+++.+.++++++++++++++|++|+|++|+.+++...+. .....++||++|+++||||+|+
T Consensus       250 ntfL~a~~g~~ig~s~~e~~~~~~a~~i~~~ak~~~~~i~lP~d~~~~~~~~~~~~~~~~~~~~~i~~~~~ilDIG~~Ti  329 (425)
T 1ltk_A          250 YTFKKVLNNMKIGTSLFDEAGSKIVGEIMEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWMGLDAGPKSI  329 (425)
T ss_dssp             HHHHHHHHCCCCTTSCCCTTGGGTHHHHHHHHHHTTCEEECCSEEEEESSSSSSSCEEEEETTTCCCTTCEEEEECHHHH
T ss_pred             HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCEECCCCCCCCCCEEEECCHHHH
T ss_conf             99999703886685332466779999999999862995345676376204567778307614557765333441362778


Q ss_pred             HHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHH
Q ss_conf             67776405776799976625322743658899999999861114885899748046998998488768646875079989
Q gi|254780653|r  303 EYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFL  382 (400)
Q Consensus       303 ~~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~~~~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L  382 (400)
                      +.|+++|++|+|||||||||+||+++|+.||.++++++++.++ +++|||||||||++|++++|+.++|+||||||||||
T Consensus       330 ~~~~~~I~~a~tI~wNGP~GvfE~~~F~~GT~~i~~~i~~~t~-~~a~sivGGGdT~aai~~~g~~~~~shvSTGGGA~L  408 (425)
T 1ltk_A          330 ENYKDVILTSKTVIWNGPQGVFEMPNFAKGSIECLNLVVEVTK-KGAITIVGGGDTASLVEQQNKKNEISHVSTGGGASL  408 (425)
T ss_dssp             HHHHHHHHTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHH-TTCEEEECCSTTHHHHHHHTCGGGSSEECCCSHHHH
T ss_pred             HHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECHHHHHHHHHCCCCCCCEEEECCHHHHH
T ss_conf             9999985628889997986654576054899999999998841-799799948799999997498569838974879999


Q ss_pred             HHHCCCCCHHHHHHCCC
Q ss_conf             98748998689884079
Q gi|254780653|r  383 EWLEGKDLPGIVALSGH  399 (400)
Q Consensus       383 ~~L~G~~LPgi~aL~~~  399 (400)
                      +||+|++||||+||++.
T Consensus       409 ~~L~G~~LPgi~aL~~k  425 (425)
T 1ltk_A          409 ELLEGKELPGVLALSNK  425 (425)
T ss_dssp             HHHTTCCCHHHHTSCC-
T ss_pred             HHHCCCCCCHHHHHCCC
T ss_conf             99879997436774269


No 6  
>2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia, transferase, phosphoprotein, glycolysis, nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens} PDB: 2wzc_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A* 2wzd_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A* 2p9q_A* 2paa_A*
Probab=100.00  E-value=0  Score=1004.54  Aligned_cols=395  Identities=39%  Similarity=0.638  Sum_probs=376.5

Q ss_pred             CCCCCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCE-EEEEECCCCCCC-CCCCCCCHHHH
Q ss_conf             9888771010015996899982016713185777258999988989999988980-999913778889-84733224788
Q gi|254780653|r    1 MSRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAK-VVIFSHLGRPQS-KSDKDCSLFKV   78 (400)
Q Consensus         1 M~~~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~ak-vii~SH~GRPkg-~~~~~~Sl~~v   78 (400)
                      |.+..||+|+ |++||+||||||||||+++|+|+||+||++++|||++|+++||| |||+||||||+| ++++++||+||
T Consensus         2 ~~~~ltl~d~-d~~gK~VlvRvD~NvPi~~g~I~Dd~RI~~~lpTI~~l~~~gak~Vil~SH~GRP~g~~~~~~~SL~~v   80 (416)
T 2wzb_A            2 LSNKLTLDKL-DVKGKRVVMRVDFNVPMKNNQITNNQRIKAAVPSIKFCLDNGAKSVVLMSHLGRPDGVPMPDKYSLEPV   80 (416)
T ss_dssp             CTTBCBGGGC-CCTTCEEEEECCCCCCEETTEESCCHHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCCHHHHCSHHH
T ss_pred             CCCCCCHHHC-CCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHH
T ss_conf             8667750211-768998999950466775991897799999999999999879998999707889999867865788999


Q ss_pred             HHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCHH---------------HHHHHHCCCCCEE
Q ss_conf             8876431013354566631025566553136464898242430343210002---------------4665312436424
Q gi|254780653|r   79 VSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEERNDP---------------DFVRMLSRNGDFY  143 (400)
Q Consensus        79 ~~~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n~~---------------~f~k~La~laDiy  143 (400)
                      +++|+++|+++|.|++|++|+.+++++++|++|+|+||||+|||+||+.|++               .|+++||++||+|
T Consensus        81 a~~L~~~L~~~V~fv~d~~g~~~~~~i~~l~~geI~LLENvRF~~eE~~n~~~~~~~~~~~e~~~~~~fa~~LA~laDvy  160 (416)
T 2wzb_A           81 AVELKSLLGKDVLFLKDCVGPEVEKACANPAAGSVILLENLRFHVEEEGKGKDASGNKVKAEPAKIEAFRASLSKLGDVY  160 (416)
T ss_dssp             HHHHHHHHTSCCEECSCSSSHHHHHHHHSCCTTEEEECCCGGGSHHHHTCC----------CHHHHHHHHHHHHHTCSEE
T ss_pred             HHHHHHHHCCCEEECCCCCHHHHHHHHHCCCCCCEEEHHHHHHCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEE
T ss_conf             99999976897076475335888887641366718874433305210024644100014333677899999986325799


Q ss_pred             EECCHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHH
Q ss_conf             75440440113763330233210003325565777653310166787189996078025578899877306888862057
Q gi|254780653|r  144 INDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGM  223 (400)
Q Consensus       144 VnDAF~~aHR~haS~~gi~~~lps~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~l  223 (400)
                      ||||||||||+|||++||+ +.|+|+|+|||+|+++|++++++|+||+++|+||||++|||++|++|++++|++++||+|
T Consensus       161 VNDAF~~aHR~haS~vgi~-~~~~~aG~l~ekEl~~L~~~l~~~~rP~vaIlGGaKisdKi~vi~~Ll~k~d~iiigG~~  239 (416)
T 2wzb_A          161 VNDAFGTAHRAHSSMVGVN-LPQKAGGFLMKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGM  239 (416)
T ss_dssp             EECCGGGTTCCCHHHHCCC-CSCEEECHHHHHHHHHHHHHHHSCCSSEEEEECSSCHHHHGGGHHHHTTTCSEEEECGGG
T ss_pred             EECCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCHH
T ss_conf             6245221255554102504-640001789999999999998387888479984376222899999998632838966099


Q ss_pred             HHHHHHH-HCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCC-CCCCCEECCCCCCCCCCCHH
Q ss_conf             8999998-301434333310000135688998753024554303541134323233331-02532120133457652003
Q gi|254780653|r  224 ANSFLVA-QGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQ-VVSAQSVPLDSIILDVGFKT  301 (400)
Q Consensus       224 antfL~A-~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~~-~~~~~~i~~~~~i~DIGp~T  301 (400)
                      |||||+| +|++||+|++|+++.+.+++++.++++++++|++|+|++|+..++...+.. ....+++|++|+++||||+|
T Consensus       240 antfl~a~~G~~iG~s~~e~~~~~~~~~i~~~a~~~~~ki~lP~D~~v~~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~T  319 (416)
T 2wzb_A          240 AFTFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPES  319 (416)
T ss_dssp             HHHHHHHHHCCCCTTSCCCHHHHTTHHHHHHHHHHTTCEEECCCEEEEESSSSTTCCEEEEETTTCCCTTCEEEEECHHH
T ss_pred             HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEECCCCCCCCCEEEECCCCCCCCCCCCCCHHH
T ss_conf             99999996498557654105667999999999987298250034540110346676630662013214786001356377


Q ss_pred             HHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHH
Q ss_conf             56777640577679997662532274365889999999986111488589974804699899848876864687507998
Q gi|254780653|r  302 VEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAF  381 (400)
Q Consensus       302 i~~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~~~~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~  381 (400)
                      ++.|+++|.+|+|||||||||+||+++|+.||.+++++++++++ +++|||||||||++|++++|+.++|+|||||||||
T Consensus       320 i~~~~~~I~~a~tI~wNGP~GvfE~~~F~~GT~~l~~~i~~~~~-~~a~sivGGGdT~aai~~~g~~~~~~hvSTGGGA~  398 (416)
T 2wzb_A          320 SKKYAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATS-RGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGAS  398 (416)
T ss_dssp             HHHHHHHHHHCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHH-TTCEEEEESTTHHHHHHHTTCTTSSSEEESCSHHH
T ss_pred             HHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEECHHHHHHHHHCCCCCCCCEEECCHHHH
T ss_conf             89999987158889996785555576153899999999997404-89989993779999999739867998584778999


Q ss_pred             HHHHCCCCCHHHHHHCC
Q ss_conf             99874899868988407
Q gi|254780653|r  382 LEWLEGKDLPGIVALSG  398 (400)
Q Consensus       382 L~~L~G~~LPgi~aL~~  398 (400)
                      |+||+|++||||+||++
T Consensus       399 L~~L~G~~LPgi~aL~~  415 (416)
T 2wzb_A          399 LELLEGKVLPGVDALSN  415 (416)
T ss_dssp             HHHHHTCCCHHHHTSCB
T ss_pred             HHHHCCCCCCCEEHHCC
T ss_conf             99987999652020035


No 7  
>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A {Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A*
Probab=100.00  E-value=0  Score=1003.44  Aligned_cols=396  Identities=36%  Similarity=0.608  Sum_probs=378.0

Q ss_pred             CCCCCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCE-EEEEECCCCCCCCCCCCCCHHHHH
Q ss_conf             9888771010015996899982016713185777258999988989999988980-999913778889847332247888
Q gi|254780653|r    1 MSRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAK-VVIFSHLGRPQSKSDKDCSLFKVV   79 (400)
Q Consensus         1 M~~~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~ak-vii~SH~GRPkg~~~~~~Sl~~v~   79 (400)
                      |..-.||+|+ |++||+||||||||||+++|+|+|++||++++|||++|+++||| |||+||||||+|+.++++||+||+
T Consensus         2 ~~~klti~d~-d~~gK~VlvRvD~NvPi~~g~I~Dd~RI~~~lpTI~~L~~~gak~VIL~SHlGRP~g~~~~~~SL~pva   80 (415)
T 1qpg_A            2 LSSKLSVQDL-DLKDKRVFIRVDFNVPLDGKKITSNQRIVAALPTIKYVLEHHPRYVVLASHLGQPNGERNEKYSLAPVA   80 (415)
T ss_dssp             TTSBCBGGGC-CCTTCEEEEECCCCCCBSSSSBSCCHHHHHHHHHHHHHHTTCCSEEEEECCCSCCCSSCCGGGCSHHHH
T ss_pred             CCCCCCHHHC-CCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHH
T ss_conf             8667853553-868998999952666863998896889999999999999879988999616889999879876839999


Q ss_pred             HHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCC--------------CCHHHHHHHHCCCCCEEEE
Q ss_conf             87643101335456663102556655313646489824243034321--------------0002466531243642475
Q gi|254780653|r   80 SIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEE--------------RNDPDFVRMLSRNGDFYIN  145 (400)
Q Consensus        80 ~~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~--------------~n~~~f~k~La~laDiyVn  145 (400)
                      ++|+++|+++|.|++||+|+.+++.+..+++|+|+||||+|||+||+              +|+++|+|+||++||+|||
T Consensus        81 ~~L~~~l~~~V~f~~d~~g~~~~~~i~~~~~G~IlLLENvRF~~~E~~~~~~~~~~~~~~~~n~~~fak~LA~laDiyVN  160 (415)
T 1qpg_A           81 KELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENLRYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADVYIN  160 (415)
T ss_dssp             HHHHHHHTSCCEEESCSSSHHHHHHHHTCCTTEEEEECCGGGSHHHHTEEEETTEEEECCHHHHHHHHHHHHHTCSEEEE
T ss_pred             HHHHHHHCCCEEECCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEC
T ss_conf             99999878974970676664767678747877189842011041100156431233211134289999998642447430


Q ss_pred             CCHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHH
Q ss_conf             44044011376333023321000332556577765331016678718999607802557889987730688886205789
Q gi|254780653|r  146 DAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMAN  225 (400)
Q Consensus       146 DAF~~aHR~haS~~gi~~~lps~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lan  225 (400)
                      ||||||||+|||++|++ ++|+|||+|||+|+++|++++++|+||+++||||||+||||++|++|++++|+|++||+|||
T Consensus       161 DAF~~aHR~haS~~g~~-~~~s~aG~lmekEl~~L~~~l~~p~rP~~aIlGGaKisdKi~~l~~l~~k~D~iiigG~man  239 (415)
T 1qpg_A          161 DAFGTAHRAHSSMVGFD-LPQRAAGFLLEKELKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAF  239 (415)
T ss_dssp             CCGGGTTSCCHHHHCCC-CSCEEECHHHHHHHHHHHHHHSSCCSSEEEEECSSCSGGGHHHHHHHTTTCSEEEECGGGHH
T ss_pred             CCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCCEEEECCHHHH
T ss_conf             53221352445223445-78340138899999999999818899869997257353589999988753011563528999


Q ss_pred             HHHH-HHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCC-CCCCCEECCCCCCCCCCCHHHH
Q ss_conf             9999-8301434333310000135688998753024554303541134323233331-0253212013345765200356
Q gi|254780653|r  226 SFLV-AQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQ-VVSAQSVPLDSIILDVGFKTVE  303 (400)
Q Consensus       226 tfL~-A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~~-~~~~~~i~~~~~i~DIGp~Ti~  303 (400)
                      |||+ ++|++||+|++|++..+.++++++++++++++|++|+|++|+.+++...+.+ ..+.++||++|+++||||+|++
T Consensus       240 tflka~~g~~ig~s~~e~~~~~~~~~i~~~a~~~~~~i~lP~D~~v~~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~Ti~  319 (415)
T 1qpg_A          240 TFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRK  319 (415)
T ss_dssp             HHHHHHSCCCCCSCCCCHHHHHHHHHHHHHHHHHTCEEECCSEEEEESSSSSSCCCCEEETTTCCCTTCEEEEECHHHHH
T ss_pred             HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHH
T ss_conf             99875124626730035565679999999999749978732567974144555672263551357876622443534399


Q ss_pred             HHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHH
Q ss_conf             77764057767999766253227436588999999998611148858997480469989984887686468750799899
Q gi|254780653|r  304 YIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLE  383 (400)
Q Consensus       304 ~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~~~~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~  383 (400)
                      .|+++|.+|+|||||||||+||+++|+.||.+|++++++.++. ++|||||||||++|++++|+.++|+||||||||+|+
T Consensus       320 ~~~~~I~~aktI~wNGP~GvfE~~~F~~GT~~l~~~ia~~~~~-~~~sivGGGdt~~ai~~~g~~~~~shvSTGGGA~L~  398 (415)
T 1qpg_A          320 LFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSAA-GNTVIIGGGDTATVAKKYGVTDKISHVSTGGGASLE  398 (415)
T ss_dssp             HHHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHH-TCEEEECCHHHHHHHHHTTCGGGSSEECCCTHHHHH
T ss_pred             HHHHHHHHHCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCC-CCEEEEECHHHHHHHHHCCCCCCCCEEECCHHHHHH
T ss_conf             9999988537789967754645652516899999999971057-984999578999999975986787169467899999


Q ss_pred             HHCCCCCHHHHHHCCC
Q ss_conf             8748998689884079
Q gi|254780653|r  384 WLEGKDLPGIVALSGH  399 (400)
Q Consensus       384 ~L~G~~LPgi~aL~~~  399 (400)
                      ||+|++||||+||++.
T Consensus       399 ~L~G~~LPgi~aL~~~  414 (415)
T 1qpg_A          399 LLEGKELPGVAFLSEK  414 (415)
T ss_dssp             HHTSCCCHHHHTSCBC
T ss_pred             HHCCCCCCHHHHHHHC
T ss_conf             9879997489897508


No 8  
>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000, riken structural genomics/proteomics initiative, RSGI, NPPSFA; HET: 3PG; 2.10A {Pyrococcus horikoshii OT3}
Probab=100.00  E-value=0  Score=998.70  Aligned_cols=388  Identities=30%  Similarity=0.494  Sum_probs=365.1

Q ss_pred             CCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             87710100159968999820167131857772589999889899999889809999137788898473322478888764
Q gi|254780653|r    4 LRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIAE   83 (400)
Q Consensus         4 ~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l~   83 (400)
                      |.||+|+ |++|||||||||||||+++|+|+|++||++++|||+||+++||||||+||||||+++  +++||+||+++|+
T Consensus         1 m~tl~d~-dl~gK~VlvRvD~NVPi~~g~I~dd~RI~~~lpTI~~ll~~gakvvl~SHlGRP~~~--~~~sl~~~a~~L~   77 (410)
T 2cun_A            1 MFRLEDF-NFHNKTVFLRVDLNSPMKDGKIISDARFKAVLPTIRYLIESGAKVVIGTHQGKPYSE--DYTTTEEHARVLS   77 (410)
T ss_dssp             CCBGGGS-CCTTCEEEEECCCCCCEETTEECCCHHHHHTHHHHHHHHHTTCEEEEECCCSCTTCT--TCCCSHHHHHHHH
T ss_pred             CCCCCCC-CCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC--CCCCHHHHHHHHH
T ss_conf             9861026-878999999935777512996887789999999999999889989998568888998--7675578999999


Q ss_pred             HHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCC-------HHHHHHHHCCCCCEEEECCHHHHCCCCC
Q ss_conf             310133545666310255665531364648982424303432100-------0246653124364247544044011376
Q gi|254780653|r   84 SILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEERN-------DPDFVRMLSRNGDFYINDAFSVSHRAHA  156 (400)
Q Consensus        84 ~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n-------~~~f~k~La~laDiyVnDAF~~aHR~ha  156 (400)
                      ++|+++|.|++|++++.++++++++++|+|+||||+|||+||++|       +++|+|+||++||+|||||||||||+||
T Consensus        78 ~~L~~~V~f~~d~~g~~~~~~i~~l~~g~i~LLENvRF~~~E~~n~~~e~~~~~~fak~La~l~DiyVNDAFg~sHR~ha  157 (410)
T 2cun_A           78 ELLDQHVEYIEDIFGRYAREKIKELKSGEVAILENLRFSAEEVKNKPIEECEKTFLVKKLSKVIDYVVNDAFATAHRSQP  157 (410)
T ss_dssp             HHHTSCEEECSCSSSHHHHHHHHTCCTTCEEECSCGGGBTTTTSCCCHHHHTTSHHHHHHHTTCSEEEECCGGGTTCCCH
T ss_pred             HHHCCCEEECCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEECCHHHHHHCCC
T ss_conf             99689525323444678899987178787898605322532013654023406999999864288998354257660563


Q ss_pred             CEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHH--CCCEEEECHHHHHHHHHHHCCC
Q ss_conf             33302332100033255657776533101667871899960780255788998773--0688886205789999983014
Q gi|254780653|r  157 SITGLSHLLPSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVK--KVDKLVIGGGMANSFLVAQGMG  234 (400)
Q Consensus       157 S~~gi~~~lps~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~--k~D~iiigG~lantfL~A~G~~  234 (400)
                      |++|+|+++|||+|++||+|+++|++++++|+||+++||||||+||||++|++|++  ++|+|++||+||||||+|+|++
T Consensus       158 S~~gi~~~lps~aG~l~ekEl~~L~~~l~~p~~P~vaIlGGaKisdKi~vl~~Ll~~~k~D~iiiGG~mantfl~a~G~~  237 (410)
T 2cun_A          158 SLVGFARIKPMIMGFLMEKEIEALMRAYYSKDSPKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANVFTLAKGFD  237 (410)
T ss_dssp             HHHTTTTTSCEEECHHHHHHHHHHHHHHTCCCSCEEEEECSSCHHHHHHHHHHHHHTTSCSEEEECHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCC
T ss_conf             22464334620116999999999876541689984999607756169999999850135748996351355688735813


Q ss_pred             CCCCCCCCCCCHHHH----HHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHC
Q ss_conf             343333100001356----8899875302455430354113432323333102532120133457652003567776405
Q gi|254780653|r  235 VGRSLCQRDFSDNVH----QIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQVIA  310 (400)
Q Consensus       235 IG~Sl~e~~~~~~ak----~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~Ti~~~~~~I~  310 (400)
                      ||+|++|+.+.+.+.    .+.+.++++.++|.+|+|++|..+........+...+++|++|+++||||+|++.|+++|+
T Consensus       238 IG~Sl~E~~~~~~~~~~~~~~~~~~~~~~~~i~~p~d~~~~~~~~~~~~~~~~~~~~i~~~~~ilDIGp~Ti~~~~~~I~  317 (410)
T 2cun_A          238 LGRKNVEFMKKKGLLDYVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLHQYQIMDIGKRTAEKYREILM  317 (410)
T ss_dssp             CCHHHHHHHHTTTGGGGHHHHHHHHHHHGGGEECCSEEEEEETTEEEEEESSSGGGGGGGTSCEEEECHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEECCEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf             15643134444217899999998621447733245122144444555533002444676666212788789999899864


Q ss_pred             CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCC
Q ss_conf             77679997662532274365889999999986111488589974804699899848876864687507998998748998
Q gi|254780653|r  311 QARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDL  390 (400)
Q Consensus       311 ~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~~~~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~~L~G~~L  390 (400)
                      +|+|||||||||+||+++|+.||.++++++++    ++++||||||||++|++++|+.+ |+||||||||||+||||++|
T Consensus       318 ~aktI~WNGP~GvfE~~~F~~GT~~i~~aia~----~~a~sivGGGdT~aai~~~g~~~-~shvSTGGGA~Le~LeG~~L  392 (410)
T 2cun_A          318 KARIIVANGPMGVFEREEFAIGTVEVFKAIAD----SPAFSVLGGGHSIASIQKYGITG-ITHISTGGGAMLSFFAGEEL  392 (410)
T ss_dssp             TCSEEEEESCSSCTTSGGGCHHHHHHHHHHHH----SSSEEEEECGGGGGGGGGSCCCC-CSEECSCSHHHHHHHTTCCC
T ss_pred             CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHH----CCCEEEECCHHHHHHHHHCCCCC-CCEEECCHHHHHHHHCCCCC
T ss_conf             79879996885556564165999999999970----89989996859999999759988-80595677999999879986


Q ss_pred             HHHHHHCCC
Q ss_conf             689884079
Q gi|254780653|r  391 PGIVALSGH  399 (400)
Q Consensus       391 Pgi~aL~~~  399 (400)
                      |||+||.++
T Consensus       393 Pgi~aL~~~  401 (410)
T 2cun_A          393 PVLRALQIS  401 (410)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
T ss_conf             279999999


No 9  
>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A {Escherichia coli}
Probab=100.00  E-value=0  Score=985.12  Aligned_cols=382  Identities=40%  Similarity=0.682  Sum_probs=366.1

Q ss_pred             CCCCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-CCCCCCCCCHHHHHH
Q ss_conf             8887710100159968999820167131857772589999889899999889809999137788-898473322478888
Q gi|254780653|r    2 SRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRP-QSKSDKDCSLFKVVS   80 (400)
Q Consensus         2 ~~~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRP-kg~~~~~~Sl~~v~~   80 (400)
                      |+++||+|+ |++||+||||+|||||+++|+|+|++||++++|||++|+++|+|+||+|||||| ++++++.+||+||++
T Consensus         1 M~~~~l~d~-d~~gK~VlvRvD~NvPi~~g~I~Dd~RI~~~lpTI~~ll~~gakvvl~SH~GRP~~~~~~~~~Sl~~v~~   79 (387)
T 1zmr_A            1 MSVIKMTDL-DLAGKRVFIRADLNVPVKDGKVTSDARIRASLPTIELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVN   79 (387)
T ss_dssp             -CCCBGGGS-CCTTCEEEEECCCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSSCBTTBCCGGGCSHHHHH
T ss_pred             CCCCCCCCC-CCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHCHHHHHH
T ss_conf             997615444-7589999999505777549918876899999999999997899899983688999998480015388999


Q ss_pred             HHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCHHHHHHHHCCCCCEEEECCHHHHCCCCCCEEE
Q ss_conf             76431013354566631025566553136464898242430343210002466531243642475440440113763330
Q gi|254780653|r   81 IAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITG  160 (400)
Q Consensus        81 ~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n~~~f~k~La~laDiyVnDAF~~aHR~haS~~g  160 (400)
                      +|+++|+++|.|++|+++..      ++++|+|+||||+|||+||++|++.|+++||++||+|||||||||||+|||++|
T Consensus        80 ~L~~~l~~~v~~~~~~~~~~------~~~~g~i~LLENvRf~~~E~~n~~~f~~~LA~l~DiyVNDAF~~aHR~haS~~g  153 (387)
T 1zmr_A           80 YLKDKLSNPVRLVKDYLDGV------DVAEGELVVLENVRFNKGEKKDDETLSKKYAALCDVFVMDAFGTAHRAQASTHG  153 (387)
T ss_dssp             HHHHHCSSCEEEESCCTTCC------CCCTTCEEEECCGGGSTTTTTTCHHHHHHHHHTCSEEEECCGGGTTSCCCCCCC
T ss_pred             HHHHHHCCCCCCCCCCCCCH------HCCCCCEEEHHHCCCCCCCCCCCHHHHHHHCCCCCEEECCCHHHHHCCCCHHHH
T ss_conf             99998646541232246500------058773986442076755433567677641133547741414444124500231


Q ss_pred             CCCCC-CCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCC
Q ss_conf             23321-00033255657776533101667871899960780255788998773068888620578999998301434333
Q gi|254780653|r  161 LSHLL-PSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSL  239 (400)
Q Consensus       161 i~~~l-ps~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~Sl  239 (400)
                      +|+|+ |||+|++||+|+++|++++++|+||+++||||||++|||++|++|++++|+|++||+||||||+|+|++||+|+
T Consensus       154 i~~~~~~s~aG~l~ekEl~~L~~~l~~p~~P~~aIlGGaKisdKi~vl~~l~~k~D~iiigG~mantFL~A~G~~IG~sl  233 (387)
T 1zmr_A          154 IGKFADVACAGPLLAAELDALGKALKEPARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIANTFIAAQGHDVGKSL  233 (387)
T ss_dssp             HHHHSSEEEECHHHHHHHHHHHHHHSSCSSSEEEEEEESCTTTTHHHHHHHHTTCSEEEEEEHHHHHHHHHTTCCCTTCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCEEEEECHHHHHHHHHHCCCCCCCCC
T ss_conf             68888888899999999999999983889986999506728789999999985105999870999999997598778776


Q ss_pred             CCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC
Q ss_conf             31000013568899875302455430354113432323333102532120133457652003567776405776799976
Q gi|254780653|r  240 CQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNG  319 (400)
Q Consensus       240 ~e~~~~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~Ti~~~~~~I~~AktI~WNG  319 (400)
                      +|+++.+.++.+.     ++++|++|+|++|+.++....+.++++.+++|++|+++||||+|++.|+++|++|+||||||
T Consensus       234 ~E~~~~~~~~~~~-----~~~~i~lp~D~~~~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~Ti~~~~~~i~~akti~wNG  308 (387)
T 1zmr_A          234 YEADLVDEAKRLL-----TTCNIPVPSDVRVATEFSETAPATLKSVNDVKADEQILDIGDASAQELAEILKNAKTILWNG  308 (387)
T ss_dssp             CCGGGHHHHHHHH-----TTSCCCCCSEEEEESSSSSSCCCEEEEGGGCCTTCEEEEECHHHHHHHHHHHHHCSEEEEES
T ss_pred             CCCCHHHHHHHHH-----HCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHCEEEEEC
T ss_conf             4302599999998-----27996666443630223688871785165679997177323033677899986416688815


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCHHHHHHCCC
Q ss_conf             62532274365889999999986111488589974804699899848876864687507998998748998689884079
Q gi|254780653|r  320 PLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALSGH  399 (400)
Q Consensus       320 P~GvfE~~~F~~GT~~l~~~ia~~~~~~~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~~L~G~~LPgi~aL~~~  399 (400)
                      |||+||+++|+.||.+|++++++    ++++||||||||++|++++|+.++|+||||||||+|+||+|++||||+||.+.
T Consensus       309 P~GvfE~~~F~~GT~~l~~ai~~----~~~~sivGGGdt~aai~~~g~~~~~shvSTGGGA~Le~L~g~~LPgi~aL~~~  384 (387)
T 1zmr_A          309 PVGVFEFPNFRKGTEIVANAIAD----SEAFSIAGGGDTLAAIDLFGIADKISYISTGGGAFLEFVEGKVLPAVAMLEER  384 (387)
T ss_dssp             CSBCTTSGGGCHHHHHHHHHHHH----SSSEEEECSHHHHHHHHHHTCGGGSSEECCCTHHHHHHHTTCCCHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHH----CCCEEEECCHHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCCHHHHHHHH
T ss_conf             54444466253899999999986----89989996879999999829866870897878999999879996459999874


No 10 
>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycolysis, mutant, permutation, permuted sequence, protein folding; 2.30A {Saccharomyces cerevisiae} SCOP: c.86.1.1
Probab=100.00  E-value=0  Score=806.22  Aligned_cols=327  Identities=36%  Similarity=0.596  Sum_probs=312.5

Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCC--------------CCHHHHHHHH
Q ss_conf             33224788887643101335456663102556655313646489824243034321--------------0002466531
Q gi|254780653|r   71 KDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEE--------------RNDPDFVRML  136 (400)
Q Consensus        71 ~~~Sl~~v~~~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~--------------~n~~~f~k~L  136 (400)
                      .+|||+||+++|+++|+++|.|++||+|+.+++++++|++|+|+||||+|||+||+              +|+++|+++|
T Consensus         2 ~K~SL~pva~~Ls~lL~~~V~fi~d~~g~~a~~~i~~l~~GeIlLLENvRF~~eE~~~~~~e~~~~~~~~~n~~~fak~L   81 (416)
T 1fw8_A            2 SKYSLAPVAKELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENLRYHIEEEGSRKVDGQKVKASKEDVQKFRHEL   81 (416)
T ss_dssp             CTTCSHHHHHHHHHHHTSCEEECSCSSSHHHHHHHHTSCTTEEEECCCGGGSHHHHSEEEETTEEEECCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHH
T ss_conf             75166999999999978997878888888999999628999589986568781310465431122012211179999998


Q ss_pred             CCCCCEEEECCHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCE
Q ss_conf             24364247544044011376333023321000332556577765331016678718999607802557889987730688
Q gi|254780653|r  137 SRNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDK  216 (400)
Q Consensus       137 a~laDiyVnDAF~~aHR~haS~~gi~~~lps~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~  216 (400)
                      |++||+|||||||||||+|||++||+ ++|+|||+|||+|+++|++++++|+||+++||||||++|||++|++|++++|+
T Consensus        82 A~laDiyVNDAFg~aHR~haS~vG~~-~~~s~aG~LmekEl~~L~k~l~~p~rP~vaIlGGaKvsdKI~vi~~Ll~kvD~  160 (416)
T 1fw8_A           82 SSLADVYINDAFGTAHRAHSSMVGFD-LPQRAAGFLLEKELKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDS  160 (416)
T ss_dssp             HTTCSEEEECCGGGTTSCCHHHHCCC-CSCEEECHHHHHHHHHHHHHHHSCCSSEEEEEECSCSTTTHHHHHHHHTTCSE
T ss_pred             HHHCCEEEECCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCE
T ss_conf             75488998656210131332010224-67344517699999999999718899818993044131579999999976213


Q ss_pred             EEECHHHHHHHHH-HHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCC-CCCCCCCEECCCCCC
Q ss_conf             8862057899999-83014343333100001356889987530245543035411343232333-310253212013345
Q gi|254780653|r  217 LVIGGGMANSFLV-AQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIP-TQVVSAQSVPLDSII  294 (400)
Q Consensus       217 iiigG~lantfL~-A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~-~~~~~~~~i~~~~~i  294 (400)
                      |++||+||||||+ ++|++||+|++|+++.+.++++++++++++++|++|+|++|+.+++...+ ..+.+.++||++|++
T Consensus       161 IiigG~mantFLk~a~g~~IG~sl~e~~~~~~a~~il~~a~~~~~~I~lP~D~~v~~~~~~~~~~~~~~~~~~I~~~~~i  240 (416)
T 1fw8_A          161 IIIGGGMAFTFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQG  240 (416)
T ss_dssp             EEEEGGGHHHHHHHHSCCCCCSCCCCHHHHHHHHHHHHHHHHHTCEEECCSEEEEESSSSTTCCEEEEETTTCCCTTCEE
T ss_pred             EEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEECCCCCCCCCEEECCCCCCCCCCCC
T ss_conf             55261889999875012607730565566768999999999759978741678983244565672275563344678621


Q ss_pred             CCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCCCCEE
Q ss_conf             76520035677764057767999766253227436588999999998611148858997480469989984887686468
Q gi|254780653|r  295 LDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAGISNEFTYV  374 (400)
Q Consensus       295 ~DIGp~Ti~~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~~~~~~sivGGGdT~aai~~~g~~~~~~hv  374 (400)
                      +||||+|++.|+++|++|+|||||||||+||+++|+.||.+++++|++.++ .+++||||||||++|++++|+.++|+||
T Consensus       241 ~DIG~~Ti~~~~~~I~~AkTI~WNGPmGvfE~~~F~~GT~~i~~aia~s~~-~~~~sIvGGGdT~aai~~~gl~~~~shV  319 (416)
T 1fw8_A          241 LDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSA-AGNTVIIGGGDTATVAKKYGVTDKISHV  319 (416)
T ss_dssp             EEECHHHHHHHHHHHHHCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHH-TTCEEEECTTHHHHHHHHTTCGGGSSEE
T ss_pred             CCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCC-CCCEEEEECHHHHHHHHHCCCCCCCCEE
T ss_conf             344644699999999857988997775454575241689999999997205-7983999677999999975986788169


Q ss_pred             ECCHHHHHHHHCCCCCHHHHHHCCC
Q ss_conf             7507998998748998689884079
Q gi|254780653|r  375 STAGGAFLEWLEGKDLPGIVALSGH  399 (400)
Q Consensus       375 STgGGA~L~~L~G~~LPgi~aL~~~  399 (400)
                      ||||||+|+||+|++||||+||++.
T Consensus       320 STGGGA~Le~LeGk~LPgIeaL~~~  344 (416)
T 1fw8_A          320 STGGGASLELLEGKELPGVAFLSEK  344 (416)
T ss_dssp             CSCSHHHHHHHTTCCCHHHHTSCSS
T ss_pred             ECCHHHHHHHHCCCCCCHHHHHHHH
T ss_conf             4777999999879997389999863


No 11 
>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycolysis, mutant, permutation, permuted sequence, protein folding; 2.30A {Saccharomyces cerevisiae} SCOP: c.86.1.1
Probab=99.68  E-value=8e-17  Score=127.54  Aligned_cols=64  Identities=39%  Similarity=0.682  Sum_probs=59.8

Q ss_pred             CCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCE-EEEEECCCCCCCCC
Q ss_conf             771010015996899982016713185777258999988989999988980-99991377888984
Q gi|254780653|r    5 RTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAK-VVIFSHLGRPQSKS   69 (400)
Q Consensus         5 ~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~ak-vii~SH~GRPkg~~   69 (400)
                      -+++|+ |+++|+|++|+|||||++..+|++..||.+++|||+|.++++++ ||+.||+|||.|+.
T Consensus       351 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (416)
T 1fw8_A          351 LSVQDL-DLKDKRVFIRVDFNVPLDGKKITSNQRIVAALPTIKYVLEHHPRYVVLASHLGRPNGER  415 (416)
T ss_dssp             CBGGGS-CCTTCEEEEECCCCCCBSSSSBSCTHHHHHHHHHHHHHHHTCCSEEEEECCCSCCCSSC
T ss_pred             CCCCCH-HHCCCCEEEEEEECCCCCCCCCCCHHHHHHHCCHHHHHHHCCCCEEEEHHHCCCCCCCC
T ss_conf             365702-20467437998727865712043067787523157999855982898686438998788


No 12 
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A
Probab=92.28  E-value=0.44  Score=26.01  Aligned_cols=311  Identities=14%  Similarity=0.162  Sum_probs=153.3

Q ss_pred             HHHHHHHHHHCCCEEEEE--ECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC-CEEECCH
Q ss_conf             889899999889809999--1377888984733224788887643101335456663102556655313646-4898242
Q gi|254780653|r   42 VVPTILELVEKKAKVVIF--SHLGRPQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEG-GIILAEN  118 (400)
Q Consensus        42 ~~pTI~~l~~~~akvii~--SH~GRPkg~~~~~~Sl~~v~~~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g-~ilLLEN  118 (400)
                      ...+|+.+++.|..+.=+  ||-.     .+.....-...+.+++.++++|...-|.-|++.+.  ..++++ ++.|-++
T Consensus        16 ~~e~i~~li~aG~~v~RiN~SHgt-----~e~~~~~i~~ir~~~~~~~~~v~I~~Dl~GpkiRt--g~~~~~~~i~l~~G   88 (470)
T 1e0t_A           16 SEEMLAKMLDAGMNVMRLNFSHGD-----YAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRT--MKLEGGNDVSLKAG   88 (470)
T ss_dssp             SHHHHHHHHHHTEEEEEEETTSSC-----HHHHHHHHHHHHHHHHHHTCCCEEEEECCCCCEEB--CCBGGGCCEEECTT
T ss_pred             CHHHHHHHHHCCCCEEEEECCCCC-----HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEE--EEECCCCEEEECCC
T ss_conf             999999999879999999899999-----99999999999999997099817999689986479--87369975896389


Q ss_pred             HHHC-------CCCC----CCHHHHHHHHCCCCCEEEECCHHH---HC----------------CCCCCEE--ECCCCCC
Q ss_conf             4303-------4321----000246653124364247544044---01----------------1376333--0233210
Q gi|254780653|r  119 VRFY-------SEEE----RNDPDFVRMLSRNGDFYINDAFSV---SH----------------RAHASIT--GLSHLLP  166 (400)
Q Consensus       119 ~Rf~-------~~E~----~n~~~f~k~La~laDiyVnDAF~~---aH----------------R~haS~~--gi~~~lp  166 (400)
                      -++.       .+..    -+.+++.+.+..--.+|++|.--.   --                +++-++.  +...-+|
T Consensus        89 ~~v~l~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~I~idDG~i~l~V~~~~~~~i~~~v~~~G~l~~~Kgvnip~~~~~~~  168 (470)
T 1e0t_A           89 QTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALP  168 (470)
T ss_dssp             CEEEEESCTTCCBBTTEEEBSCTTHHHHCCTTCEEEETTTTEEEEEEEEETTEEEEEECSCEEECSSCEEECSSCCCCCC
T ss_pred             CEEEEECCCCCCCCCCEEEECCHHHHHHCCCCCEEEEECCEEEEEEEECCCCEEEEEEEECEEECCCCEEECCCCCCCCC
T ss_conf             99999568876897778984408879756899889997786999997324888999996282962897164289755664


Q ss_pred             C------------------CCCHHH---HHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHH--HHHHHHCCCEEEECHHH
Q ss_conf             0------------------033255---657776533101667871899960780255788--99877306888862057
Q gi|254780653|r  167 S------------------YIGRAM---QKELSMLESCFSESKKPLVAIVGGSKVSTKITL--LINLVKKVDKLVIGGGM  223 (400)
Q Consensus       167 s------------------~aG~l~---ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~--i~~L~~k~D~iiigG~l  223 (400)
                      .                  +.+..|   .+.+..+.+.+.....+.+-|+  |||+++-.+  |+..++.+|.|++.=|=
T Consensus       169 ~ltekD~~~i~~~~~~~vd~i~lSfV~~~~dv~~~r~~l~~~~~~~~~ii--aKIE~~~al~nl~eI~~~sDgimiaRGD  246 (470)
T 1e0t_A          169 ALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHII--SKIENQEGLNNFDEILEASDGIMVARGD  246 (470)
T ss_dssp             SSCHHHHHHHHHHHHHTCSEEEESSCCSHHHHHHHHHHHHTTTCTTCEEE--EEECSHHHHHTHHHHHHHSSEEEEEHHH
T ss_pred             CCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEE--EEECCHHHHHHHHHHHHHCCEEEEECCC
T ss_conf             46387899886110159764410356866788888766776157663479--8852699998799999757578996566


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCC--CCCCCCC-EECCC--CCCCC--
Q ss_conf             89999983014343333100001356889987530245543035411343232333--3102532-12013--34576--
Q gi|254780653|r  224 ANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIP--TQVVSAQ-SVPLD--SIILD--  296 (400)
Q Consensus       224 antfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~--~~~~~~~-~i~~~--~~i~D--  296 (400)
                             .|.+++-    +..-...+.++.++.+.+.++++-+.+.-+=. .+..|  .++.++. .+-++  ...+-  
T Consensus       247 -------Lg~e~~~----e~vp~~Qk~Ii~~~~~~~kpvi~ATq~LeSM~-~~~~PTRAEv~Dv~nav~dGad~vmLs~E  314 (470)
T 1e0t_A          247 -------LGVEIPV----EEVIFAQKMMIEKCIRARKVVITATMMLDSMI-KNPRPTDAEAGDVANAILDGTDAVMLSGE  314 (470)
T ss_dssp             -------HHHHSCH----HHHHHHHHHHHHHHHHHTCEEEEECC----------CCCHHHHHHHHHHHHHTCSEEEECCC
T ss_pred             -------CHHCCCH----HHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHH-CCCCCCCHHHHHHHHHHHHCCCEEEECCC
T ss_conf             -------0100898----88789999999999865998898167788763-18998634578899999816766877366


Q ss_pred             -----CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC--EEEE-CCCHHHHHHHHCCCC
Q ss_conf             -----52003567776405776799976625322743658899999999861114885--8997-480469989984887
Q gi|254780653|r  297 -----VGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRI--ISIA-GGGDTITALAHAGIS  368 (400)
Q Consensus       297 -----IGp~Ti~~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~~~~~--~siv-GGGdT~aai~~~g~~  368 (400)
                           ---++++....++.+++..+|.-.. .-+......-+.+++.+..+....-++  +.+. =-|-|+..+.++--.
T Consensus       315 Ta~G~~P~~~v~~~~~i~~~aE~~~~~~~~-~~~~~~~~~~~~aia~aAv~lA~~~~AkaIvv~T~SG~tA~~vS~~RP~  393 (470)
T 1e0t_A          315 SAKGKYPLEAVSIMATICERTDRVMNSRLE-FNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPD  393 (470)
T ss_dssp             ------CHHHHHHHHHHHHHHHTTCCCCCC----------CHHHHHHHHHHHHHHTTCSBEEEECSSSHHHHHHHTTCCS
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCCCCCH-HCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCC
T ss_conf             457757889999999999998631333210-0135667881077899999998740777799995971899999835979


Q ss_pred             CCCCEE
Q ss_conf             686468
Q gi|254780653|r  369 NEFTYV  374 (400)
Q Consensus       369 ~~~~hv  374 (400)
                      -.+--+
T Consensus       394 ~PIiav  399 (470)
T 1e0t_A          394 ATILAL  399 (470)
T ss_dssp             SBEEEE
T ss_pred             CCEEEE
T ss_conf             999998


No 13 
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus}
Probab=68.46  E-value=1.4  Score=22.80  Aligned_cols=312  Identities=13%  Similarity=0.170  Sum_probs=153.4

Q ss_pred             HHHHHHHHHHCCCEEEEE--ECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH-----HHHCCCCCEE
Q ss_conf             889899999889809999--137788898473322478888764310133545666310255665-----5313646489
Q gi|254780653|r   42 VVPTILELVEKKAKVVIF--SHLGRPQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQS-----IASLSEGGII  114 (400)
Q Consensus        42 ~~pTI~~l~~~~akvii~--SH~GRPkg~~~~~~Sl~~v~~~l~~~l~~~V~fi~d~~g~~~~~~-----i~~l~~g~il  114 (400)
                      ...+|+.|+++|..+.=+  ||- -+    +.........+.+++.++++|...-|.-|++.+..     --.|+.|+.+
T Consensus        17 ~~e~l~~li~aG~nv~RlN~SHg-~~----e~h~~~i~~iR~~~~~~~~~vaIllDl~GpkIRtg~~~~~~i~L~~G~~v   91 (587)
T 2e28_A           17 SVDKLVQLMEAGMNVARLNFSHG-DH----EEHGRRIANIREAAKRTGRTVAILLDTKGPEIRTHNMENGAIELKEGSKL   91 (587)
T ss_dssp             SHHHHHHHHHHTEEEEEEETTSS-CH----HHHHHHHHHHHHHHHHTTCCCEEEEECCCCCCBBCCCTTSCBCCCSSCEE
T ss_pred             CHHHHHHHHHCCCCEEEEECCCC-CH----HHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCEEEECCCCEE
T ss_conf             99999999987999999989999-99----99999999999999970998079997999856886327982896589999


Q ss_pred             ECCHHHHCCCCCC--------CHHHHHHHHCCCCCEEEECCHHHHC----CCC-CCEE---------------ECC---C
Q ss_conf             8242430343210--------0024665312436424754404401----137-6333---------------023---3
Q gi|254780653|r  115 LAENVRFYSEEER--------NDPDFVRMLSRNGDFYINDAFSVSH----RAH-ASIT---------------GLS---H  163 (400)
Q Consensus       115 LLEN~Rf~~~E~~--------n~~~f~k~La~laDiyVnDAF~~aH----R~h-aS~~---------------gi~---~  163 (400)
                      -|     ..+|..        +.++|.+.+..--.+|+.|..-...    ..+ ..+.               -+|   .
T Consensus        92 ~l-----~~~~~~g~~~~i~v~y~~l~~~v~~Gd~IlidDG~i~l~v~~v~~~~~~i~~~V~~gG~L~~~KgVn~P~~~~  166 (587)
T 2e28_A           92 VI-----SMSEVLGTPEKISVTYPSLIDDVSVGAKILLDDGLISLEVNAVDKQAGEIVTTVLNGGVLKNKKGVNVPGVKV  166 (587)
T ss_dssp             EE-----ESSCCCCCSSEEEBSCTTSTTTCCTTCEEEETTTTEEEEEEEEETTTTEEEEECCSCCCBCSSCBEECTTSCC
T ss_pred             EE-----ECCCCCCCCCEEECCCHHHHHHCCCCCEEEEECCCEEEEEEEEECCCCEEEEEECCCEEECCCCEEECCCCCC
T ss_conf             99-----5688689767897450887976679987999448369999997156538999973035986997165279867


Q ss_pred             CCCC------------------CCCHH---HHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHH--HHHHHHCCCEEEEC
Q ss_conf             2100------------------03325---5657776533101667871899960780255788--99877306888862
Q gi|254780653|r  164 LLPS------------------YIGRA---MQKELSMLESCFSESKKPLVAIVGGSKVSTKITL--LINLVKKVDKLVIG  220 (400)
Q Consensus       164 ~lps------------------~aG~l---~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~--i~~L~~k~D~iiig  220 (400)
                      -+|+                  |.+..   -.+++..+.+++++...+.+-|+  |||+.+-.+  |+..++.+|.|++.
T Consensus       167 ~lp~lTekD~~di~f~~~~~vD~ialSFVr~a~DV~~iR~~l~~~~~~~i~II--AKIE~~~av~NldeIi~~sDGIMVA  244 (587)
T 2e28_A          167 NLPGITEKDRADILFGIRQGIDFIAASFVRRASDVLEIRELLEAHDALHIQII--AKIENEEGVANIDEILEAADGLMVA  244 (587)
T ss_dssp             CCCSCCHHHHHHHHHHHHHTCSEEEESSCCSHHHHHHHHHHHHHTTCTTSEEE--EEECSHHHHHTHHHHHHHSSEEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCEE--EEEECCHHHHHHHHHHHHCCEEEEE
T ss_conf             87334454599998761238989985676863569999987765216666557--8970545776599988756589997


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCC--CCCCCC-EECCC------
Q ss_conf             057899999830143433331000013568899875302455430354113432323333--102532-12013------
Q gi|254780653|r  221 GGMANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPT--QVVSAQ-SVPLD------  291 (400)
Q Consensus       221 G~lantfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~--~~~~~~-~i~~~------  291 (400)
                      =|       -.|.+++-   | +.--..|+++.++.+.+.++++-+...-+= ..+..|.  +..++. .+-++      
T Consensus       245 RG-------DLGvEip~---e-~VP~vQK~II~kc~~~gKPVI~ATQMLeSM-i~nprPTRAEvsDVANAV~DGtDavML  312 (587)
T 2e28_A          245 RG-------DLGVEIPA---E-EVPLIQKLLIKKSNMLGKPVITATQMLDSM-QRNPRPTRAEASDVANAIFDGTDAVML  312 (587)
T ss_dssp             HH-------HHHHHSCG---G-GHHHHHHHHHHHHHHHTCCEEEESSSSGGG-GTCSSCCHHHHHHHHHHHHHTCSEEEE
T ss_pred             CC-------CCCCCCCH---H-HHHHHHHHHHHHHHHCCCEEEEEHHHHHHH-HHCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf             66-------63132899---9-989999999999998199599816877767-528999744567799998637856887


Q ss_pred             ---CCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCC-CCCCHHHHHHHHHHHHHHHHCCCCCEEEE---CCCHHHHHHHH
Q ss_conf             ---345765200356777640577679997662532-27436588999999998611148858997---48046998998
Q gi|254780653|r  292 ---SIILDVGFKTVEYIKQVIAQARTVMWNGPLGVF-EIEPFDRATVEVAHYVAKLTKERRIISIA---GGGDTITALAH  364 (400)
Q Consensus       292 ---~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~Gvf-E~~~F~~GT~~l~~~ia~~~~~~~~~siv---GGGdT~aai~~  364 (400)
                         -..=+--.++++.+..++..+..-+|.-..... .......-|.+++.+......+.++-.|+   --|.|+..+.+
T Consensus       313 SgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~l~a~aIv~~T~SG~TAr~iSk  392 (587)
T 2e28_A          313 SGETAAGQYPVEAVKTMHQIALRTEQALEHRDILSQRTKESQTTITDAIGQSVAHTALNLDVAAIVTPTVSGKTPQMVAK  392 (587)
T ss_dssp             SHHHHTCSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHH
T ss_conf             46544675878999999999999985002345555420355687799999999999864899889998899779999983


Q ss_pred             CCCCCCCCEEECC
Q ss_conf             4887686468750
Q gi|254780653|r  365 AGISNEFTYVSTA  377 (400)
Q Consensus       365 ~g~~~~~~hvSTg  377 (400)
                      |--.-.+--++.-
T Consensus       393 ~RP~~PIiA~T~~  405 (587)
T 2e28_A          393 YRPKAPIIAVTSN  405 (587)
T ss_dssp             TCCSSCEEEEESS
T ss_pred             HCCCCCEEEECCC
T ss_conf             3959989998599


No 14 
>1yj5_A 5' polynucleotide kinase-3' phosphatase catalytic domain; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: c.108.1.9 c.37.1.1
Probab=67.84  E-value=1.3  Score=23.03  Aligned_cols=165  Identities=18%  Similarity=0.123  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHCCCEEEEEECCCC-CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHH
Q ss_conf             988989999988980999913778-8898473322478888764310133545666310255665531364648982424
Q gi|254780653|r   41 RVVPTILELVEKKAKVVIFSHLGR-PQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENV  119 (400)
Q Consensus        41 ~~~pTI~~l~~~~akvii~SH~GR-Pkg~~~~~~Sl~~v~~~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~  119 (400)
                      .+...|+.|.++|.+|||+|-|+- .+|... .-.+......+.+.|+.++.+.--...    ....+-.+|-+..+.+ 
T Consensus        58 ~V~~~Lk~L~~~gy~IVI~TNQ~gi~~g~~~-~~~~~~ki~~i~~~l~ip~~~~~a~~~----~~~RKP~~GM~~~~~~-  131 (383)
T 1yj5_A           58 EIPKKLQELAAEGYKLVIFTNQMGIGRGKLP-AEVFKGKVEAVLEKLGVPFQVLVATHA----GLNRKPVSGMWDHLQE-  131 (383)
T ss_dssp             THHHHHHHHHHHTCEEEEEEECHHHHHTSSC-HHHHHHHHHHHHHHHTSCCEEEEECSS----SSSSTTSTHHHHHHHH-
T ss_pred             CHHHHHHHHHHCCCEEEEEECCCHHCCCCCC-HHHHHHHHHHHHHHCCCCEEEEEECCC----CCCCCCCCHHHHHHHH-
T ss_conf             7899999999889979999488033069989-999999999999975997799983687----7888996179999999-


Q ss_pred             HHCCCCCCCHHHHHHHHCCCCCEEEECC---------------HHHHCCCCCCEEECCCCCC-C-CCCHHHH--------
Q ss_conf             3034321000246653124364247544---------------0440113763330233210-0-0332556--------
Q gi|254780653|r  120 RFYSEEERNDPDFVRMLSRNGDFYINDA---------------FSVSHRAHASITGLSHLLP-S-YIGRAMQ--------  174 (400)
Q Consensus       120 Rf~~~E~~n~~~f~k~La~laDiyVnDA---------------F~~aHR~haS~~gi~~~lp-s-~aG~l~e--------  174 (400)
                       -+.+...  -++.      -=+||=||               ||++-|.-|-..|+.-+.| . +.|.-..        
T Consensus       132 -~~n~~~~--id~~------~Sf~vGDaaGR~~~~~~~~~~~D~s~~D~~FA~N~gi~f~tpe~~F~~~~~~~~~~~~~~  202 (383)
T 1yj5_A          132 -QANEGIP--ISVE------DSVFVGDAAGRLANWAPGRKKKDFSCADRLFALNVGLPFATPEEFFLKWPAARFELPAFD  202 (383)
T ss_dssp             -TSSSSCC--CCGG------GCEEECSCCCBCTTSBTTBCSCCSCCHHHHHHHHHTCCEECHHHHTTCCCCCCBCCCSCC
T ss_pred             -HHCCCCC--CCHH------HEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCC
T ss_conf             -7277854--4532------538961456764455555433333013699998659860288898536876535567788


Q ss_pred             -HHHHHH------HHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf             -577765------3310166787189996078025578899877306888862
Q gi|254780653|r  175 -KELSML------ESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIG  220 (400)
Q Consensus       175 -kEi~~L------~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiig  220 (400)
                       +++...      ........+|.+.|+-|.--|-|=...++++..-+.+.+-
T Consensus       203 p~~~~~~~~~~~~~~~~~~~~~~~liilvG~PGSGKST~a~~~~~~~~~~~i~  255 (383)
T 1yj5_A          203 PRTISSAGPLYLPESSSLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN  255 (383)
T ss_dssp             GGGCCSCSCSSBSTTSCSSCSSCCEEEEECCTTSSHHHHHHHHTGGGTCEEEE
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEC
T ss_conf             45535665335775434578997599996788887148999973269978984


No 15 
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis}
Probab=66.41  E-value=6.5  Score=18.43  Aligned_cols=163  Identities=15%  Similarity=0.233  Sum_probs=71.9

Q ss_pred             EECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC-CCCCCHHHHHHHHHHCCC
Q ss_conf             7772589999889899999889809999137788898473322478888764310133545-666310255665531364
Q gi|254780653|r   32 KVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIAESILHKNILF-VNDCIGSTLSQSIASLSE  110 (400)
Q Consensus        32 ~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l~~~l~~~V~f-i~d~~g~~~~~~i~~l~~  110 (400)
                      -|||++.....+..+..+++.|...|.+    |-|....  -.+...+..+.+.....+.| ++|-..    -+ ..+.-
T Consensus        21 ~IT~~~~~~~~l~~i~~~~~~gv~~iql----R~K~~~~--~e~~~l~~~l~~~~~~~~~liInd~~~----lA-~~~~a   89 (221)
T 1yad_A           21 AITDDSKPVEELARIIITIQNEVDFIHI----RERSKSA--ADILKLLDLIFEGGIDKRKLVMNGRVD----IA-LFSTI   89 (221)
T ss_dssp             EECCSCSCHHHHHHHHHHHGGGCSEEEE----CCTTSCH--HHHHHHHHHHHHTTCCGGGEEEESCHH----HH-HTTTC
T ss_pred             EECCCCCCHHHHHHHHHHHHCCCCEEEE----CCCCCCH--HHHHHHHHHHHHHHCCCCEEEEECCHH----HH-HHCCC
T ss_conf             9869987879999999999789989997----6899799--999999999998617698599969799----99-86499


Q ss_pred             CCEEECCHHHHCCCCCCCHHHHHHHHCCCCCEEE----E--CCHHHHCCCCCCEEECCCCCC-----CCCCHHHHHHHHH
Q ss_conf             6489824243034321000246653124364247----5--440440113763330233210-----0033255657776
Q gi|254780653|r  111 GGIILAENVRFYSEEERNDPDFVRMLSRNGDFYI----N--DAFSVSHRAHASITGLSHLLP-----SYIGRAMQKELSM  179 (400)
Q Consensus       111 g~ilLLEN~Rf~~~E~~n~~~f~k~La~laDiyV----n--DAF~~aHR~haS~~gi~~~lp-----s~aG~l~ekEi~~  179 (400)
                      ..|-|=++-        -.+..+|.+.+  |..|    +  +..-.+.+..+.-+++..+.|     ...+.    -++.
T Consensus        90 dGvHlg~~d--------~~~~~~r~~~~--~~iIG~S~h~~~e~~~a~~~gaDYi~~gpif~T~tK~~~~~~----g~~~  155 (221)
T 1yad_A           90 HRVQLPSGS--------FSPKQIRARFP--HLHIGRSVHSLEEAVQAEKEDADYVLFGHVFETDCKKGLEGR----GVSL  155 (221)
T ss_dssp             CEEEECTTS--------CCHHHHHHHCT--TCEEEEEECSHHHHHHHHHTTCSEEEEECCC----------C----HHHH
T ss_pred             CEEECCCCC--------CCHHHHHHHCC--CCEEEEECCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHH----HHHH
T ss_conf             888415576--------68999986454--878985444599999998659997830677666666531033----6788


Q ss_pred             HHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHH-CCCEEEECHHHH
Q ss_conf             533101667871899960780255788998773-068888620578
Q gi|254780653|r  180 LESCFSESKKPLVAIVGGSKVSTKITLLINLVK-KVDKLVIGGGMA  224 (400)
Q Consensus       180 L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~-k~D~iiigG~la  224 (400)
                      +..+....+.|++| |||-..+ .   +..+.+ -++.+.+++++-
T Consensus       156 l~~~~~~~~~PvvA-iGGI~~~-n---i~~~~~~Ga~gvav~s~I~  196 (221)
T 1yad_A          156 LSDIKQRISIPVIA-IGGMTPD-R---LRDVKQAGADGIAVMSGIF  196 (221)
T ss_dssp             HHHHHHHCCSCEEE-ESSCCGG-G---HHHHHHTTCSEEEESHHHH
T ss_pred             HHHHHHCCCCCEEE-ECCCCHH-H---HHHHHHCCCCEEEEEHHHH
T ss_conf             87640035676798-6798999-9---9999980998899849997


No 16 
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=66.26  E-value=3.5  Score=20.22  Aligned_cols=42  Identities=19%  Similarity=0.342  Sum_probs=32.0

Q ss_pred             CCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf             771010015996899982016713185777258999988989999988980999913
Q gi|254780653|r    5 RTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSH   61 (400)
Q Consensus         5 ~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH   61 (400)
                      .++-=++.++||+|||       +..|++        +..-++.|++.||+|+++|.
T Consensus         3 ~sL~l~~~l~~k~vLV-------VGgG~V--------A~rK~~~LL~agA~vtVVsp   44 (274)
T 1kyq_A            3 KSLQLAHQLKDKRILL-------IGGGEV--------GLTRLYKLMPTGCKLTLVSP   44 (274)
T ss_dssp             CCEEEEECCTTCEEEE-------EEESHH--------HHHHHHHHGGGTCEEEEEEE
T ss_pred             CCCCCCEEECCCEEEE-------ECCCHH--------HHHHHHHHHHCCCEEEEEEC
T ss_conf             3361106828986999-------899899--------99999999968996999929


No 17 
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3e0w_A 3e0v_A
Probab=66.20  E-value=3.7  Score=20.01  Aligned_cols=328  Identities=14%  Similarity=0.194  Sum_probs=162.7

Q ss_pred             ECCCCCCCCEECCHHHHHH-------HHHHHHHHHHCCCEEEE--EECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf             0167131857772589999-------88989999988980999--91377888984733224788887643101335456
Q gi|254780653|r   23 DWNVPFIDGKVADVTRIER-------VVPTILELVEKKAKVVI--FSHLGRPQSKSDKDCSLFKVVSIAESILHKNILFV   93 (400)
Q Consensus        23 D~NvPi~~g~I~d~~RI~~-------~~pTI~~l~~~~akvii--~SH~GRPkg~~~~~~Sl~~v~~~l~~~l~~~V~fi   93 (400)
                      ++|.|..+-   -.|+|.+       ...+|+.|+++|..+.=  +||- .+    +.....-...+.+++.++++|...
T Consensus        11 ~~~~~~~~~---r~tKIIaTiGPss~~~~~l~~l~~aGv~v~RiN~SHg-t~----e~~~~~i~~iR~~~~~~~~~v~Il   82 (499)
T 3hqn_D           11 SIFDPVANY---RAARIICTIGPSTQSVEALKGLIQSGMSVARMNFSHG-SH----EYHQTTINNVRQAAAELGVNIAIA   82 (499)
T ss_dssp             CTTSCCCSS---CCSEEEEECSTTTCSHHHHHHHHHHTEEEEEEETTSS-CH----HHHHHHHHHHHHHHHHHTCCCEEE
T ss_pred             HHCCCCCCC---CCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCC-CH----HHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             213897568---8872998328887999999999987998999989999-99----999999999999999839983899


Q ss_pred             CCCCHHHHHHHHHHCCCCCEEECCHHHHC--CCC-----CC------CHHHHHHHHCCCCCEEEECCHHH----HCCCCC
Q ss_conf             66310255665531364648982424303--432-----10------00246653124364247544044----011376
Q gi|254780653|r   94 NDCIGSTLSQSIASLSEGGIILAENVRFY--SEE-----ER------NDPDFVRMLSRNGDFYINDAFSV----SHRAHA  156 (400)
Q Consensus        94 ~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~--~~E-----~~------n~~~f~k~La~laDiyVnDAF~~----aHR~ha  156 (400)
                      -|.-|++.+.  ..++++.+.|-++-.++  .++     ..      +-+++.+.+..--.+|+.|.--.    .+....
T Consensus        83 ~Dl~GpkIRt--g~~~~~~i~l~~G~~v~~~~~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~I~idDG~i~l~V~~~~~~~  160 (499)
T 3hqn_D           83 LDTKGPEIRT--GQFVGGDAVMERGATCYVTTDPAFADKGTKDKFYIDYQNLSKVVRPGNYIYIDDGILILQVQSHEDEQ  160 (499)
T ss_dssp             EECCCCCCBB--CCBGGGEEEECTTCEEEEECCGGGTTCBCSSEEEBSCTTHHHHCCTTCEEEETTTTEEEEEEEEEETT
T ss_pred             EECCCCEEEE--EEECCCCEEEECCCEEEEECCCCCCCCCCCCEEEECCHHHHHHCCCCCEEEEECCEEEEEEEEECCCC
T ss_conf             9899984577--67369978983698899965642245888887962506658764899889984571799999753884


Q ss_pred             CE---------------EECCC---CCCC------------------CCCHHH---HHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf             33---------------30233---2100------------------033255---657776533101667871899960
Q gi|254780653|r  157 SI---------------TGLSH---LLPS------------------YIGRAM---QKELSMLESCFSESKKPLVAIVGG  197 (400)
Q Consensus       157 S~---------------~gi~~---~lps------------------~aG~l~---ekEi~~L~~~l~~~~~P~v~IiGG  197 (400)
                      .+               +-+|.   -+|.                  +.+..|   .+++..+.+++....+ -+-|+  
T Consensus       161 ~v~~~v~~gG~l~s~Kgvnip~~~~~lp~ltekD~~di~~a~~~~vD~valSFVrs~~dv~~lr~~l~~~~~-~~~ii--  237 (499)
T 3hqn_D          161 TLECTVTNSHTISDRRGVNLPGCDVDLPAVSAKDRVDLQFGVEQGVDMIFASFIRSAEQVGDVRKALGPKGR-DIMII--  237 (499)
T ss_dssp             EEEEEECSCEEEETTCBEECTTSCCCCCSSCHHHHHHHHHHHHTTCSEEEETTCCSHHHHHHHHHHHCGGGT-TSEEE--
T ss_pred             EEEEEEECCEEECCCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCC-CCEEE--
T ss_conf             699999667585378879668986686445510199999999618998996688987899999999997199-86699--


Q ss_pred             CCHHHHHHH--HHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCC
Q ss_conf             780255788--998773068888620578999998301434333310000135688998753024554303541134323
Q gi|254780653|r  198 SKVSTKITL--LINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMK  275 (400)
Q Consensus       198 aKisdKi~~--i~~L~~k~D~iiigG~lantfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~  275 (400)
                      |||+++..+  ++.+++.+|.|++.=|=       .|.+++-    ++.-...++++.++.+++.++++-+...-+-. .
T Consensus       238 aKIE~~~a~~nl~eI~~~sDgimiaRGD-------Lg~e~~~----e~vp~~Qk~ii~~~~~~gKpvivATqmLeSM~-~  305 (499)
T 3hqn_D          238 CKIENHQGVQNIDSIIEESDGIMVARGD-------LGVEIPA----EKVVVAQKILISKCNVAGKPVICATQMLESMT-Y  305 (499)
T ss_dssp             EEECSHHHHHTHHHHHHHSSEEEEEHHH-------HHHHSCH----HHHHHHHHHHHHHHHHHTCCEEEESSSSGGGG-T
T ss_pred             EEECCHHHHHHHHHHHHHCCEEEEECCC-------CCCCCCH----HHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHH-H
T ss_conf             9962788886488877646489996566-------3232898----78389999999999982994896168789887-5


Q ss_pred             CCCCC--CCCCCC-EECCC--CCCCC----C---CCHHHHHHHHHHCCCCEEEEECCCCC---CCCCCHHHHHHHHHHHH
Q ss_conf             23333--102532-12013--34576----5---20035677764057767999766253---22743658899999999
Q gi|254780653|r  276 TGIPT--QVVSAQ-SVPLD--SIILD----V---GFKTVEYIKQVIAQARTVMWNGPLGV---FEIEPFDRATVEVAHYV  340 (400)
Q Consensus       276 ~~~~~--~~~~~~-~i~~~--~~i~D----I---Gp~Ti~~~~~~I~~AktI~WNGP~Gv---fE~~~F~~GT~~l~~~i  340 (400)
                      +..|+  ++.++. .+-++  ...+-    +   --++++.++.++..|+..+|.=+.--   ++.+....-+.+++.+.
T Consensus       306 ~p~PTRAEv~Dvanav~dG~D~vmLs~ETa~G~~P~~~V~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aIa~aa  385 (499)
T 3hqn_D          306 NPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSALNEYVFFNSIKKLQHIPMSADEAVCSSA  385 (499)
T ss_dssp             SSSCCHHHHHHHHHHHHHTCSEEEESHHHHTCSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCCSSCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf             89997277888998887085089974652357688999999999999998501223443210100257766167799999


Q ss_pred             HHHHCCCCC--EEEE-CCCHHHHHHHHCCCCCCCCEEE
Q ss_conf             861114885--8997-4804699899848876864687
Q gi|254780653|r  341 AKLTKERRI--ISIA-GGGDTITALAHAGISNEFTYVS  375 (400)
Q Consensus       341 a~~~~~~~~--~siv-GGGdT~aai~~~g~~~~~~hvS  375 (400)
                      .......++  +.+. --|-|+..+.++--.-.+--++
T Consensus       386 v~~A~~~~akaIvv~T~sG~Ta~~iSk~RP~~PIiavT  423 (499)
T 3hqn_D          386 VNSVYETKAKAMVVLSNTGRSARLVAKYRPNCPIVCVT  423 (499)
T ss_dssp             HHHHHHHTCSEEEEECSSSHHHHHHHHTCCSSCEEEEE
T ss_pred             HHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEC
T ss_conf             99987247878999889848999999549699889987


No 18 
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreductase, porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=65.26  E-value=3.4  Score=20.23  Aligned_cols=35  Identities=17%  Similarity=0.369  Sum_probs=29.6

Q ss_pred             HCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             01599689998201671318577725899998898999998898099991
Q gi|254780653|r   11 RDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFS   60 (400)
Q Consensus        11 ~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~S   60 (400)
                      -|++||+|||       +..|++        +..-++.|++.||+|.++|
T Consensus        27 l~L~~k~VLV-------VGgG~v--------A~rKi~~Ll~~ga~VtVis   61 (223)
T 3dfz_A           27 LDLKGRSVLV-------VGGGTI--------ATRRIKGFLQEGAAITVVA   61 (223)
T ss_dssp             ECCTTCCEEE-------ECCSHH--------HHHHHHHHGGGCCCEEEEC
T ss_pred             EECCCCEEEE-------ECCCHH--------HHHHHHHHHHCCCEEEEEE
T ss_conf             9839985999-------898899--------9999999974899799993


No 19 
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A*
Probab=62.56  E-value=7.7  Score=17.98  Aligned_cols=70  Identities=17%  Similarity=0.142  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHCCCEEE-EEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             998898999998898099-991377888984733224788887643101335456663102556655313646
Q gi|254780653|r   40 ERVVPTILELVEKKAKVV-IFSHLGRPQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEG  111 (400)
Q Consensus        40 ~~~~pTI~~l~~~~akvi-i~SH~GRPkg~~~~~~Sl~~v~~~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g  111 (400)
                      .-++++++.|++++..++ ++||-.||.|... .....|+..+.+ -.|.++...++...+...+.+..+++.
T Consensus        13 ~~a~~~L~~L~~~~~~i~~VvT~pd~~~grg~-~~~~~~v~~~A~-~~~i~~~~~~~~~~~~~~~~~~~~~~d   83 (314)
T 1fmt_A           13 DFAARHLDALLSSGHNVVGVFTQPDRPAGRGK-KLMPSPVKVLAE-EKGLPVFQPVSLRPQENQQLVAELQAD   83 (314)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEECCCCBC-------CBCCHHHHHHH-HTTCCEECCSCSCSHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC-CCCCCHHHHHHH-HCCCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf             89999999999789977999909998556888-488997999999-859984035234628899999851999


No 20 
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis CDC1551} SCOP: c.73.1.2
Probab=55.60  E-value=10  Score=17.22  Aligned_cols=48  Identities=21%  Similarity=0.229  Sum_probs=37.3

Q ss_pred             CCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf             1599689998201671318577725899998898999998898099991377888
Q gi|254780653|r   12 DIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQ   66 (400)
Q Consensus        12 d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPk   66 (400)
                      .++||++.|.+.=++      |+|+..+...+.-|..|.+.|-++||. |=|+|.
T Consensus        22 ~~r~ktiVIKlGGsv------l~d~~~~~~l~~dIa~L~~~G~~vVlV-hG~g~~   69 (299)
T 2ap9_A           22 QLHGKVVVVKYGGNA------MTDDTLRRAFAADMAFLRNCGIHPVVV-HGGGPQ   69 (299)
T ss_dssp             HHTTCEEEEEECTHH------HHSHHHHHHHHHHHHHHHTTTCEEEEE-ECCSHH
T ss_pred             HHCCCEEEEEECCHH------HCCHHHHHHHHHHHHHHHHCCCEEEEE-ECCCHH
T ss_conf             968998999989168------559779999999999999779969999-589535


No 21 
>2j28_9 Signal recognition particle 54; ribosome, protein/RNA complex; 8.0A {Escherichia coli}
Probab=55.43  E-value=10  Score=17.20  Aligned_cols=155  Identities=19%  Similarity=0.234  Sum_probs=104.9

Q ss_pred             CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC-CCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCHHH-
Q ss_conf             80999913778889847332247888876431013354566-6310255665531364648982424303432100024-
Q gi|254780653|r   54 AKVVIFSHLGRPQSKSDKDCSLFKVVSIAESILHKNILFVN-DCIGSTLSQSIASLSEGGIILAENVRFYSEEERNDPD-  131 (400)
Q Consensus        54 akvii~SH~GRPkg~~~~~~Sl~~v~~~l~~~l~~~V~fi~-d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n~~~-  131 (400)
                      ..||++-  | |.|- -+..|+..+|.++.+.-+++|..+. |++-+.+.++++.+..     -=++.||......+|. 
T Consensus        99 p~VIm~V--G-vnGs-GKTTTiaKLA~~~k~k~~kkVllva~DTfR~AA~eQLk~~a~-----~~~vpv~~~~~~~dp~~  169 (430)
T 2j28_9           99 PAVVLMA--G-LQGA-GKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAE-----QVGVDFFPSDVGQKPVD  169 (430)
T ss_dssp             SCEEEEE--C-SSSS-SSTTTHHHHHHHHHTSSSCCCCBCCCCCSSSCSHHHHHHHHH-----HTTCCCCCCSSCCCTTH
T ss_pred             CEEEEEE--C-CCCC-CCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHH-----HCCCCCCCCCCCCCHHH
T ss_conf             8599997--5-6899-855429999999999479858999557555158999999986-----04777415665568789


Q ss_pred             -----HHHHHCCCCCEEEECCHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHH
Q ss_conf             -----665312436424754404401137633302332100033255657776533101667871899960780255788
Q gi|254780653|r  132 -----FVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITL  206 (400)
Q Consensus       132 -----f~k~La~laDiyVnDAF~~aHR~haS~~gi~~~lps~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~  206 (400)
                           ....-....|+.+-|-=|..|++.                .+-+|+..+.++. +|.. .+.|+-..-=.+-+..
T Consensus       170 va~~ai~~ak~~~~DvviiDTAGR~~~d~----------------~lm~El~~i~~~~-~p~e-~lLV~da~~gq~~~~q  231 (430)
T 2j28_9          170 IVNAALKEAKLKFYDVLLVDTAGRLHVDE----------------AMMDEIKQVHASI-NPVE-TLFVVDAMTGQDAANT  231 (430)
T ss_dssp             HHHHHHHHHHHTTCSCEEEEECCCCSSHH----------------HHHHHHHHHHHHH-CCSE-EEEEEETTTGGGGHHH
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCHHHHH----------------HHHHHHHHHHHHC-CCCE-EEEEEECCCCHHHHHH
T ss_conf             99999999998699989994676302159----------------9999999999856-9857-9998425567567999


Q ss_pred             HHHHHHC--CCEEEEC-------HHHHHHHHHHHCCCC
Q ss_conf             9987730--6888862-------057899999830143
Q gi|254780653|r  207 LINLVKK--VDKLVIG-------GGMANSFLVAQGMGV  235 (400)
Q Consensus       207 i~~L~~k--~D~iiig-------G~lantfL~A~G~~I  235 (400)
                      ++.+-+.  .+.++++       ||.|.......|..|
T Consensus       232 a~~f~~~~~~~gvIlTKlDg~akgG~alsi~~~~~~PI  269 (430)
T 2j28_9          232 AKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPI  269 (430)
T ss_dssp             HHHHHTTCSSCEEEEECSSSCSCCTHHHHHHHTTTCCB
T ss_pred             HHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCE
T ss_conf             99998635886058850256777307855999979696


No 22 
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, structural genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A
Probab=54.31  E-value=7.4  Score=18.10  Aligned_cols=311  Identities=14%  Similarity=0.181  Sum_probs=148.0

Q ss_pred             HHHHHHHHHHCCCEEEE--EECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH-H-----HHCCCCCE
Q ss_conf             88989999988980999--9137788898473322478888764310133545666310255665-5-----31364648
Q gi|254780653|r   42 VVPTILELVEKKAKVVI--FSHLGRPQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQS-I-----ASLSEGGI  113 (400)
Q Consensus        42 ~~pTI~~l~~~~akvii--~SH~GRPkg~~~~~~Sl~~v~~~l~~~l~~~V~fi~d~~g~~~~~~-i-----~~l~~g~i  113 (400)
                      ...+|+.|++.|..+.=  +||-. +   .+-.--+..+.+..++.++++|...-|.-|++.+.. +     -.++.|+.
T Consensus        50 ~~e~l~~L~~aG~dv~RiN~SHg~-~---e~~~~~i~~iR~a~~~~~~~~v~Il~Dl~GpkIRtg~~~~~~~i~l~~G~~  125 (511)
T 3gg8_A           50 NVDTLVKMIDAGMNVCRLNFSHGD-H---ETHARTVQNIQEAMKQRPEARLAILLDTKGPEIRTGFLKDHKPITLQQGAT  125 (511)
T ss_dssp             SHHHHHHHHHHTEEEEEEETTSSC-H---HHHHHHHHHHHHHHHHCTTCCCEEEEECCCCCCBBCC-----CEEECTTCE
T ss_pred             CHHHHHHHHHCCCCEEEEECCCCC-H---HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCEEEECCCCE
T ss_conf             989999999869999999889999-9---999999999999998558997599995889856899737995378458988


Q ss_pred             EECC-HHHHCCCCC---CCHHHHHHHHCCCCCEEEECCH-------------------------------HHHCCCCCCE
Q ss_conf             9824-243034321---0002466531243642475440-------------------------------4401137633
Q gi|254780653|r  114 ILAE-NVRFYSEEE---RNDPDFVRMLSRNGDFYINDAF-------------------------------SVSHRAHASI  158 (400)
Q Consensus       114 lLLE-N~Rf~~~E~---~n~~~f~k~La~laDiyVnDAF-------------------------------~~aHR~haS~  158 (400)
                      +.|- +--....++   -+.++|.+.+..---+|++|.-                               -......+..
T Consensus       126 v~l~~~~~~~~~~~~i~v~~~~l~~~vk~Gd~I~idDG~i~l~V~~~~~~~v~~~v~~~G~l~~~Kgvn~p~~~~~~~~l  205 (511)
T 3gg8_A          126 LKIVTDYNLIGDETTIACSYGALPQSVKPGNTILIADGSLSVKVVEVGSDYVITQAQNTATIGERKNMNLPNVKVQLPVI  205 (511)
T ss_dssp             EEEESCTTCCCCSSEEEBSCTTHHHHCCTTCEEEETTTTEEEEEEEECSSEEEEEESSCEEECSSCBEECTTCCCCSCSS
T ss_pred             EEEECCCCCCCCCCEEEEECCCCCCCCCCCCEEEECCCCEEEEEEEEECCCEEEECCCCCCCCCCCEECCCCCCCCCCCC
T ss_conf             99955886679867798631433223578988998189558999984021000100245445775121268752356665


Q ss_pred             EECC-----CC-CCC---CCCHHH---HHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHH--HHHHHHCCCEEEECHHHH
Q ss_conf             3023-----32-100---033255---657776533101667871899960780255788--998773068888620578
Q gi|254780653|r  159 TGLS-----HL-LPS---YIGRAM---QKELSMLESCFSESKKPLVAIVGGSKVSTKITL--LINLVKKVDKLVIGGGMA  224 (400)
Q Consensus       159 ~gi~-----~~-lps---~aG~l~---ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~--i~~L~~k~D~iiigG~la  224 (400)
                      +.--     ++ ++.   +.+..|   .+.+..+..++.... +-+.|+  |||.++-.+  |+..++.+|.|++.=|= 
T Consensus       206 tekD~~~~i~~a~~~~vd~ialSFv~s~~dv~~~r~~l~~~~-~~~~ii--aKIE~~~a~~nl~eI~~~sDgimIaRGD-  281 (511)
T 3gg8_A          206 GEKDKHDILNFGIPMGCNFIAASFVQSADDVRYIRGLLGPRG-RHIRII--PKIENVEGLVNFDEILAEADGIMIARGD-  281 (511)
T ss_dssp             CHHHHHHHHHTTTTTTCCEEEETTCCSHHHHHHHHHHHTGGG-TTCEEE--EEECSHHHHHTHHHHHHHCSCEEEEHHH-
T ss_pred             CCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCC-CEEEEE--EEECCHHHHHHHHHHHHHCCEEEEECCC-
T ss_conf             556378999999871999999768784788899999998579-806899--9533487776379898738789997676-


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCC--CCCCCCE-ECCCC--CCCC---
Q ss_conf             99999830143433331000013568899875302455430354113432323333--1025321-20133--4576---
Q gi|254780653|r  225 NSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPT--QVVSAQS-VPLDS--IILD---  296 (400)
Q Consensus       225 ntfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~--~~~~~~~-i~~~~--~i~D---  296 (400)
                            .|.++|-    ++.-...+.+++++.+.+.++++-+...-+- ..+..|.  ++.++.. +.++-  ..|-   
T Consensus       282 ------Lg~ei~~----e~vp~~Qk~Ii~~~~~~~kpvivATqmLeSM-~~~~~PTRAEv~Dvanav~dG~D~vmLs~ET  350 (511)
T 3gg8_A          282 ------LGMEIPP----EKVFLAQKMMIAKCNVVGKPVITATQMLESM-IKNPRPTRAEAADVANAVLDGTDCVMLSGET  350 (511)
T ss_dssp             ------HHHHSCH----HHHHHHHHHHHHHHHHTTCCEEEESSSSGGG-GTCSSCCHHHHHHHHHHHHHTCSEEEESHHH
T ss_pred             ------CCCCCCH----HHHHHHHHHHHHHHHHCCCEEEECHHHHHHH-HHCCCCCCHHHHHHHHHHHCCCCEEEECCCC
T ss_conf             ------3143898----8958999999999998099299820779999-7489774065889999998178578874664


Q ss_pred             -CC---CHHHHHHHHHHCCCCEEEEECCCCCC---CCCCHHHHHHHHHHHHHHHHCCCCCEEEE---CCCHHHHHHHHCC
Q ss_conf             -52---00356777640577679997662532---27436588999999998611148858997---4804699899848
Q gi|254780653|r  297 -VG---FKTVEYIKQVIAQARTVMWNGPLGVF---EIEPFDRATVEVAHYVAKLTKERRIISIA---GGGDTITALAHAG  366 (400)
Q Consensus       297 -IG---p~Ti~~~~~~I~~AktI~WNGP~Gvf---E~~~F~~GT~~l~~~ia~~~~~~~~~siv---GGGdT~aai~~~g  366 (400)
                       +|   .++++.+..++..|...+|.-+..-.   ..+....-+.+++.+......+.++-.||   -=|-|+..+.++-
T Consensus       351 a~G~~P~~~V~~~~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aAv~~A~~l~akaIVv~T~SG~TA~~iS~~R  430 (511)
T 3gg8_A          351 ANGEFPVITVETMARICYEAETCVDYPALYRAMCLAVPPPISTQEAVARAAVETAECVNAAIILALTETGQTARLIAKYR  430 (511)
T ss_dssp             HTCSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHHHHTCSEEEEECSSSHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHC
T ss_conf             45767679999999999999844344767777654068853069999999999985369988999879867999999539


Q ss_pred             CCCCC
Q ss_conf             87686
Q gi|254780653|r  367 ISNEF  371 (400)
Q Consensus       367 ~~~~~  371 (400)
                      -.-.+
T Consensus       431 P~~PI  435 (511)
T 3gg8_A          431 PMQPI  435 (511)
T ss_dssp             CSSCE
T ss_pred             CCCCE
T ss_conf             79988


No 23 
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=53.88  E-value=11  Score=17.04  Aligned_cols=135  Identities=21%  Similarity=0.260  Sum_probs=79.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCC-C----------EEEECHHHHHHHHHHHCC
Q ss_conf             10003325565777653310166787189996078025578899877306-8----------888620578999998301
Q gi|254780653|r  165 LPSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKV-D----------KLVIGGGMANSFLVAQGM  233 (400)
Q Consensus       165 lps~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~-D----------~iiigG~lantfL~A~G~  233 (400)
                      ++.+.|+  ++|++.+..++....++-+.++|-+-+ -|-.+++.|..+. .          +++-- -++...  |   
T Consensus        21 l~~~igR--d~Ei~~l~~iL~r~~k~n~lLVGepGV-GKTaiV~~la~ri~~~~vp~~L~~~~i~~l-d~~~Lv--A---   91 (187)
T 2p65_A           21 LDPVIGR--DTEIRRAIQILSRRTKNNPILLGDPGV-GKTAIVEGLAIKIVQGDVPDSLKGRKLVSL-DLSSLI--A---   91 (187)
T ss_dssp             SCCCCSC--HHHHHHHHHHHTSSSSCEEEEESCGGG-CHHHHHHHHHHHHHTTCSCTTTTTCEEEEE-CHHHHH--H---
T ss_pred             CCCCCCH--HHHHHHHHHHHHCCCCCCCEEECCCCC-CHHHHHHHHHHHHHCCCCCHHHCCCEEEEE-EHHHHH--C---
T ss_conf             9877482--999999999985667899668558873-679999999999980899988869879996-088987--4---


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEE-CCCCCCCCCCCCCCCCCEE----CCCCCCCCCCCHHHHHHHHH
Q ss_conf             434333310000135688998753024554303541-1343232333310253212----01334576520035677764
Q gi|254780653|r  234 GVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVV-VAREMKTGIPTQVVSAQSV----PLDSIILDVGFKTVEYIKQV  308 (400)
Q Consensus       234 ~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D~~-v~~~~~~~~~~~~~~~~~i----~~~~~i~DIGp~Ti~~~~~~  308 (400)
                        | .-+..+|.+-.+.++..+++...+++|=+|=+ ..-...... ....++.++    -....+-=||.-|-+.|.+.
T Consensus        92 --G-~~~~G~~e~rl~~l~~e~~~~~~~iILfiDe~h~l~~~g~~~-~~~~~~~~iLkp~L~~g~l~~I~atT~eey~~~  167 (187)
T 2p65_A           92 --G-AKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVA-EGALDAGNILKPMLARGELRCIGATTVSEYRQF  167 (187)
T ss_dssp             --H-CCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSC-TTSCCTHHHHHHHHHTTCSCEEEEECHHHHHHH
T ss_pred             --C-CCCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHCCCCCC-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHH
T ss_conf             --8-983657999999999999846588699833189883367767-772669999999870798179984799999999


Q ss_pred             HCCC
Q ss_conf             0577
Q gi|254780653|r  309 IAQA  312 (400)
Q Consensus       309 I~~A  312 (400)
                      +.+-
T Consensus       168 ~e~d  171 (187)
T 2p65_A          168 IEKD  171 (187)
T ss_dssp             TTTC
T ss_pred             HHCC
T ss_conf             8719


No 24 
>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1
Probab=52.78  E-value=11  Score=17.05  Aligned_cols=24  Identities=21%  Similarity=0.344  Sum_probs=12.1

Q ss_pred             HHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             983014343333100001356889
Q gi|254780653|r  229 VAQGMGVGRSLCQRDFSDNVHQIA  252 (400)
Q Consensus       229 ~A~G~~IG~Sl~e~~~~~~ak~i~  252 (400)
                      +-+|..|++-.+-.+.-+...+.+
T Consensus       260 k~mGlPi~~~i~AtN~N~il~~~~  283 (428)
T 1vb3_A          260 KSLGLPVKRFIAATNVNDTVPRFL  283 (428)
T ss_dssp             HHTTCCCSEEEEEECSCCHHHHHH
T ss_pred             HHCCCCCEEEEEECCCCCCHHHHH
T ss_conf             867998226999648980078999


No 25 
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=52.51  E-value=11  Score=16.90  Aligned_cols=68  Identities=12%  Similarity=0.169  Sum_probs=41.2

Q ss_pred             HCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             01599689998201671318577725899998898999998898099991377888984733224788887643101335
Q gi|254780653|r   11 RDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIAESILHKNI   90 (400)
Q Consensus        11 ~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l~~~l~~~V   90 (400)
                      .||+||++||-         |   -...|=+  .+-+.|.++|++|++..+.+|..      -.+..+++.+++. +.++
T Consensus         7 ~~L~gKvalIT---------G---as~GIG~--aiA~~la~~Ga~Vvi~~~~~~~~------~~~~~~~~~i~~~-g~~~   65 (262)
T 3ksu_A            7 HDLKNKVIVIA---------G---GIKNLGA--LTAKTFALESVNLVLHYHQAKDS------DTANKLKDELEDQ-GAKV   65 (262)
T ss_dssp             SCCTTCEEEEE---------T---CSSHHHH--HHHHHHTTSSCEEEEEESCGGGH------HHHHHHHHHHHTT-TCEE
T ss_pred             CCCCCCEEEEE---------C---CCCHHHH--HHHHHHHHCCCEEEEECCCCCCH------HHHHHHHHHHHHC-CCEE
T ss_conf             89999989993---------8---9878999--99999998699899980886798------9999999999963-9839


Q ss_pred             CCCC-CCCHH
Q ss_conf             4566-63102
Q gi|254780653|r   91 LFVN-DCIGS   99 (400)
Q Consensus        91 ~fi~-d~~g~   99 (400)
                      .++. |...+
T Consensus        66 ~~~~~Dv~~~   75 (262)
T 3ksu_A           66 ALYQSDLSNE   75 (262)
T ss_dssp             EEEECCCCSH
T ss_pred             EEEECCCCCH
T ss_conf             9997679999


No 26 
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*
Probab=52.22  E-value=9.3  Score=17.46  Aligned_cols=54  Identities=19%  Similarity=0.178  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHC-CC-----EEEEEECCCCCCCCCCCCCCHH---HHHHHHHHHCCCCCCCCCC
Q ss_conf             58999988989999988-98-----0999913778889847332247---8888764310133545666
Q gi|254780653|r   36 VTRIERVVPTILELVEK-KA-----KVVIFSHLGRPQSKSDKDCSLF---KVVSIAESILHKNILFVND   95 (400)
Q Consensus        36 ~~RI~~~~pTI~~l~~~-~a-----kvii~SH~GRPkg~~~~~~Sl~---~v~~~l~~~l~~~V~fi~d   95 (400)
                      ..-.+...|.|+.++++ +-     ..|-.+ . .| |-   ..+|.   ..++.|+-.++.|+.-++.
T Consensus        45 r~H~~~l~~~i~~~l~~a~i~~~~id~iavt-~-gP-G~---~~~L~vG~~~Ak~la~~~~~P~i~v~H  107 (330)
T 2ivn_A           45 EHHARLMKPLLRKALSEAGVSLDDIDVIAFS-Q-GP-GL---GPALRVVATAARALAVKYRKPIVGVNH  107 (330)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCTTTCCEEEEE-E-ES-SC---HHHHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHCCEEEEE-C-CC-CC---CCCHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf             9999999999999999849985568668881-2-89-84---102699999999999860876376263


No 27 
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 1zjh_A 3g2g_A 1t5a_A* 3bjt_A 3bjf_A* 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* 1aqf_A* 1pkm_A 2g50_A* 1pkn_A 2vgb_A* 2vgf_A* 2vgg_A* ...
Probab=52.21  E-value=4.1  Score=19.76  Aligned_cols=317  Identities=15%  Similarity=0.200  Sum_probs=154.9

Q ss_pred             HHHHHHHHHHCCCEEEEE--ECCCCCCCCCCCCCCHHHHHHHHHH-----HCCCCCCCCCCCCHHHHHHH-H-------H
Q ss_conf             889899999889809999--1377888984733224788887643-----10133545666310255665-5-------3
Q gi|254780653|r   42 VVPTILELVEKKAKVVIF--SHLGRPQSKSDKDCSLFKVVSIAES-----ILHKNILFVNDCIGSTLSQS-I-------A  106 (400)
Q Consensus        42 ~~pTI~~l~~~~akvii~--SH~GRPkg~~~~~~Sl~~v~~~l~~-----~l~~~V~fi~d~~g~~~~~~-i-------~  106 (400)
                      ...+|+.++++|..+.-+  || |.++.   -.-.+..+.+.-++     .++++|...-|.-|++.+.. +       -
T Consensus        76 ~~e~l~~li~aG~nv~RiN~SH-g~~e~---~~~~i~~iR~~~~~~~~~~~~~~pvaIllDl~GpkIRtG~l~~~~~~~i  151 (550)
T 3gr4_A           76 SVETLKEMIKSGMNVARLNFSH-GTHEY---HAETIKNVRTATESFASDPILYRPVAVALDTKGPEIRTGLIKGSGTAEV  151 (550)
T ss_dssp             SHHHHHHHHHHTCCEEEEETTS-SCHHH---HHHHHHHHHHHHHTTTTCTTTCCCCEEEEECCCSCCBBCCBTTBTTCCE
T ss_pred             CHHHHHHHHHCCCCEEEEECCC-CCHHH---HHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEECCCCCEEE
T ss_conf             9999999998799899998999-99999---9999999999999748664578522899979998678889558984127


Q ss_pred             HCCCCCEEECCHHHHCCCC------CCCHHHHHHHHCCCCCEEEECCHHHH---------------------CCCCCCEE
Q ss_conf             1364648982424303432------10002466531243642475440440---------------------11376333
Q gi|254780653|r  107 SLSEGGIILAENVRFYSEE------ERNDPDFVRMLSRNGDFYINDAFSVS---------------------HRAHASIT  159 (400)
Q Consensus       107 ~l~~g~ilLLEN~Rf~~~E------~~n~~~f~k~La~laDiyVnDAF~~a---------------------HR~haS~~  159 (400)
                      .|+.|+.+-|-.-.-+.+.      .-+.++|.+.+..--.+|++|.--..                     -|..-.+-
T Consensus       152 ~L~~G~~v~lt~~~~~~~~~~~~~i~v~~~~l~~~vk~Gd~I~idDG~i~l~V~~~~~~~i~~~V~~gG~L~s~KgvnlP  231 (550)
T 3gr4_A          152 ELKKGATLKITLDNAYMEKCDENILWLDYKNICKVVEVGSKIYVDDGLISLQVKQKGADFLVTEVENGGSLGSKKGVNLP  231 (550)
T ss_dssp             EECTTCEEEEECCGGGTTCBCSSEEEBSCTTHHHHCCTTCEEEETTTTEEEEEEEECSSEEEEEEEECEEECSSCBEECT
T ss_pred             EECCCCEEEEECCCCCCCCCCCCEEEECCHHCCCCCCCCCEEEEECCCCEEEEEEECCCCCEEEECCCCEECCCCEEECC
T ss_conf             96589999998278656788777687454101000377838999547508999887068517997257387699726418


Q ss_pred             ECCCCCCC------------------CCCHHH---HHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHH--HHHHHHCCCE
Q ss_conf             02332100------------------033255---657776533101667871899960780255788--9987730688
Q gi|254780653|r  160 GLSHLLPS------------------YIGRAM---QKELSMLESCFSESKKPLVAIVGGSKVSTKITL--LINLVKKVDK  216 (400)
Q Consensus       160 gi~~~lps------------------~aG~l~---ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~--i~~L~~k~D~  216 (400)
                      |...-+|+                  +.+..|   .+.+..+.+++.+... -+-|+  |||+++-.+  |+..++.+|.
T Consensus       232 ~~~~~lp~ltekD~~di~fa~~~~vD~ialSFVr~a~dv~~~r~~l~~~g~-~i~II--aKIE~~~av~NldeIl~~sDg  308 (550)
T 3gr4_A          232 GAAVDLPAVSEKDIQDLKFGVEQDVDMVFASFIRKASDVHEVRKVLGEKGK-NIKII--SKIENHEGVRRFDEILEASDG  308 (550)
T ss_dssp             TSCCCCCSSCHHHHHHHHHHHHTTCSEEEETTCCSHHHHHHHHHHHTTTTT-TSEEE--EEECSHHHHHTHHHHHHHSSE
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCC-CCEEE--EEEECCHHHHHHHHHHHHCCE
T ss_conf             975675226687899999998749978996066876669999999996499-84289--965210244416778763668


Q ss_pred             EEECHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCC--CCCCCC-EECCC-C
Q ss_conf             8862057899999830143433331000013568899875302455430354113432323333--102532-12013-3
Q gi|254780653|r  217 LVIGGGMANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPT--QVVSAQ-SVPLD-S  292 (400)
Q Consensus       217 iiigG~lantfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~--~~~~~~-~i~~~-~  292 (400)
                      |++.=|=       .|.+++-    ++.--..|.++.++.+.+.++++-+-..-+= ..+..+.  ++.++. .+-++ +
T Consensus       309 IMVARGD-------LgvEip~----e~vp~~QK~II~~c~~~gKPVIvATqmLeSM-i~~p~PTRAEvsDVaNAV~DGaD  376 (550)
T 3gr4_A          309 IMVARGD-------LGIEIPA----EKVFLAQKMMIGRCNRAGKPVICATQMLESM-IKKPRPTRAEGSDVANAVLDGAD  376 (550)
T ss_dssp             EEEEHHH-------HHHHSCG----GGHHHHHHHHHHHHHHHTCCEEEESSTTGGG-GTCSSCCHHHHHHHHHHHHHTCS
T ss_pred             EEEECCC-------CCCCCCH----HHHHHHHHHHHHHHHHCCCEEEECCHHHHHH-HHCCCCCHHHHHHHHHHHHCCCC
T ss_conf             9995566-------0112899----9999999999999987499289845767767-63899970678889989974983


Q ss_pred             CCC--------CCCCHHHHHHHHHHCCCCEEEEECCCCCC---CCCCHHHHHHHHHHHHHHHHCC--CCCEEEE-CCCHH
Q ss_conf             457--------65200356777640577679997662532---2743658899999999861114--8858997-48046
Q gi|254780653|r  293 IIL--------DVGFKTVEYIKQVIAQARTVMWNGPLGVF---EIEPFDRATVEVAHYVAKLTKE--RRIISIA-GGGDT  358 (400)
Q Consensus       293 ~i~--------DIGp~Ti~~~~~~I~~AktI~WNGP~Gvf---E~~~F~~GT~~l~~~ia~~~~~--~~~~siv-GGGdT  358 (400)
                      -+|        .--.++++.+..++..+...+|.-+..-.   ..+....=+.+++.+...+...  ..++.++ --|.|
T Consensus       377 avMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~~av~~A~~~~a~aIv~~T~sG~t  456 (550)
T 3gr4_A          377 CIMLSGETAKGDYPLEAVRMQHLIAREAEAAIYHLQLFEELRRLAPITSDPTEATAVGAVEASFKCCSGAIIVLTKSGRS  456 (550)
T ss_dssp             EEEESHHHHTCSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHTTCSCEEEECSSSHH
T ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHH
T ss_conf             79973552468677899999999999987230035667763225667888789999999999873799989998696599


Q ss_pred             HHHHHHCCCCCCCCEEECC
Q ss_conf             9989984887686468750
Q gi|254780653|r  359 ITALAHAGISNEFTYVSTA  377 (400)
Q Consensus       359 ~aai~~~g~~~~~~hvSTg  377 (400)
                      +..+.++--.-.+--++.-
T Consensus       457 a~~iS~~RP~~PI~a~t~~  475 (550)
T 3gr4_A          457 AHQVARYRPRAPIIAVTRN  475 (550)
T ss_dssp             HHHHHTTCCSSCEEEEESC
T ss_pred             HHHHHHHCCCCCEEEECCC
T ss_conf             9999955959988998998


No 28 
>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transferase, cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*
Probab=50.35  E-value=12  Score=16.69  Aligned_cols=48  Identities=19%  Similarity=0.230  Sum_probs=35.9

Q ss_pred             HCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf             0159968999820167131857772589999889899999889809999137788
Q gi|254780653|r   11 RDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRP   65 (400)
Q Consensus        11 ~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRP   65 (400)
                      ..++||++.|.+.=|+      ++|+..+...+..|..|.+.|-++||. |=|+|
T Consensus        45 ~~~~~k~iVIKlGGs~------l~d~~~~~~l~~dIa~L~~~G~~vVlV-hGgg~   92 (321)
T 2v5h_A           45 QQFAGRTVVVKYGGAA------MKQEELKEAVMRDIVFLACVGMRPVVV-HGGGP   92 (321)
T ss_dssp             HHTTTCEEEEEECTHH------HHSHHHHHHHHHHHHHHHHTTCEEEEE-ECCHH
T ss_pred             HHHCCCEEEEEECCHH------HCCHHHHHHHHHHHHHHHHCCCEEEEE-ECCCC
T ss_conf             9858998999989078------359879999999999999879969999-58963


No 29 
>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} PDB: 2i54_A* 2i55_A*
Probab=48.68  E-value=10  Score=17.24  Aligned_cols=24  Identities=13%  Similarity=-0.010  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf             99889899999889809999137788
Q gi|254780653|r   40 ERVVPTILELVEKKAKVVIFSHLGRP   65 (400)
Q Consensus        40 ~~~~pTI~~l~~~~akvii~SH~GRP   65 (400)
                      .+....|+.|.++|-.+++.|  |||
T Consensus        24 ~~~~~ai~~l~~~g~~v~~~T--GR~   47 (246)
T 3f9r_A           24 DEMRALIKRARGAGFCVGTVG--GSD   47 (246)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEC--SSC
T ss_pred             HHHHHHHHHHHHCCCEEEEEC--CCC
T ss_conf             999999999996899999988--999


No 30 
>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, structural genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367}
Probab=48.30  E-value=13  Score=16.48  Aligned_cols=25  Identities=16%  Similarity=0.429  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf             9889899999889809999137788
Q gi|254780653|r   41 RVVPTILELVEKKAKVVIFSHLGRP   65 (400)
Q Consensus        41 ~~~pTI~~l~~~~akvii~SH~GRP   65 (400)
                      ...+.|...+.+|.+++++|.-|-|
T Consensus        76 ~~~~~i~~~l~~g~~v~l~sdaG~P  100 (296)
T 3kwp_A           76 ERIPQLIAKLKQGMQIAQVSDAGMP  100 (296)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSBCT
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             6799999999859978999769985


No 31 
>2w9h_A DHFR, dihydrofolate reductase; NADP, trimethoprim, oxidoreductase, one-carbon metabolism; HET: TOP; 1.48A {Staphylococcus aureus} PDB: 2w9g_A* 3frd_X* 3fre_X* 3frf_X* 3fyv_X* 3fyw_X* 3frb_X* 3fra_X* 3fy8_X* 3fy9_X* 3fq0_A* 3f0b_X* 3f0s_X* 3f0q_X* 3fqc_A* 3fqz_A* 3m08_A* 3f0u_X* 3f0v_X* 3f0x_X* ...
Probab=47.62  E-value=13  Score=16.41  Aligned_cols=24  Identities=38%  Similarity=0.589  Sum_probs=19.3

Q ss_pred             EEEEEECCHHHHHHHHHHHHHCCCEEEECH
Q ss_conf             899960780255788998773068888620
Q gi|254780653|r  192 VAIVGGSKVSTKITLLINLVKKVDKLVIGG  221 (400)
Q Consensus       192 v~IiGGaKisdKi~~i~~L~~k~D~iiigG  221 (400)
                      +.|+||++      +.+.+++.+|++.+.=
T Consensus        90 i~ViGG~~------iY~~~l~~~d~i~lT~  113 (159)
T 2w9h_A           90 VFIFGGQT------LFEEMIDKVDDMYITV  113 (159)
T ss_dssp             EEEEECHH------HHHHHTTTCSEEEEEE
T ss_pred             EEEECCHH------HHHHHHHHCCEEEEEE
T ss_conf             68976689------9999886589999998


No 32 
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=47.37  E-value=13  Score=16.43  Aligned_cols=33  Identities=6%  Similarity=0.150  Sum_probs=14.2

Q ss_pred             HCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             0577679997662532274365889999999986111
Q gi|254780653|r  309 IAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTK  345 (400)
Q Consensus       309 I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~  345 (400)
                      ..+++.+|+--|.+-.-.    .+...+.+.+.+..+
T Consensus        79 ~~~~~~liLDEPt~~LD~----~~~~~l~~~l~~l~~  111 (148)
T 1f2t_B           79 AGEISLLILDEPTPYLDE----ERRRKLITIMERYLK  111 (148)
T ss_dssp             HSSCSEEEEESCSCTTCH----HHHHHHHHHHHHTGG
T ss_pred             CCCCCEEEEECCCCCCCH----HHHHHHHHHHHHHHH
T ss_conf             579998998488665899----999999999999995


No 33 
>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A*
Probab=47.09  E-value=14  Score=16.36  Aligned_cols=36  Identities=14%  Similarity=0.245  Sum_probs=30.6

Q ss_pred             EECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf             777258999988989999988980999913778889
Q gi|254780653|r   32 KVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQS   67 (400)
Q Consensus        32 ~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg   67 (400)
                      -++|+.++......|-.|.++|.+.|+++|=|+|.+
T Consensus        13 ~l~d~~~~~~~~~~Ia~l~~~g~~~vVvvhG~g~~~   48 (258)
T 1gs5_A           13 LLDSEEALERLFSALVNYRESHQRPLVIVHGGGCVV   48 (258)
T ss_dssp             GGGCHHHHHHHHHHHHHHHTTCCSCEEEEECCHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
T ss_conf             405989999999999999977997599987981777


No 34 
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=46.01  E-value=14  Score=16.26  Aligned_cols=71  Identities=20%  Similarity=0.131  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHCCCEEE-EEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEC
Q ss_conf             98898999998898099-99137788898473322478888764310133545666310255665531364648982
Q gi|254780653|r   41 RVVPTILELVEKKAKVV-IFSHLGRPQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILA  116 (400)
Q Consensus        41 ~~~pTI~~l~~~~akvi-i~SH~GRPkg~~~~~~Sl~~v~~~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLL  116 (400)
                      -..++++.|+++|..|+ ++++-.+|.++ ....   ++.++.++ .+.++...++.-.+...+.++++++.=++..
T Consensus        11 ~~~~~l~~L~~~~~~i~~V~t~~~~~~~~-~~~~---~v~~~a~~-~~ip~~~~~~~~~~~~~~~l~~~~~dl~i~~   82 (305)
T 2bln_A           11 MGCLGIEALLAAGYEISAIFTHTDNPGEK-AFYG---SVARLAAE-RGIPVYAPDNVNHPLWVERIAQLSPDVIFSF   82 (305)
T ss_dssp             HHHHHHHHHHHTTCEEEEEECCCC-------CCC---CHHHHHHH-HTCCEECCSCCCSHHHHHHHHHTCCSEEEEE
T ss_pred             HHHHHHHHHHHCCCCEEEEEECCCCCCCC-CCCC---HHHHHHHH-CCCCEECCCCCCCHHHHHHHHHCCCCEEEEE
T ss_conf             99999999997899889999089999887-8989---89999998-6998984598998999999983299999986


No 35 
>3ma8_A Pyruvate kinase; parasitology, pyruvate kiase, glycol kinase, magnesium, transferase, structural genomi structural genomics consortium; HET: CIT; 2.64A {Cryptosporidium parvum}
Probab=45.60  E-value=7.9  Score=17.91  Aligned_cols=306  Identities=17%  Similarity=0.185  Sum_probs=143.3

Q ss_pred             HHHHHHHHHHCCCEEEE--EECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH-H-----HHCCCCCE
Q ss_conf             88989999988980999--9137788898473322478888764310133545666310255665-5-----31364648
Q gi|254780653|r   42 VVPTILELVEKKAKVVI--FSHLGRPQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQS-I-----ASLSEGGI  113 (400)
Q Consensus        42 ~~pTI~~l~~~~akvii--~SH~GRPkg~~~~~~Sl~~v~~~l~~~l~~~V~fi~d~~g~~~~~~-i-----~~l~~g~i  113 (400)
                      ...+|+.|+++|..+.=  +||- .++   +-.-.+..+.+..+..++++|...-|.-|++.+.. +     -.|+.|+.
T Consensus        66 ~~~~l~~li~aG~~v~RiN~SHg-s~e---~~~~~i~~iR~~~~~~~~~~v~I~lDl~GpkiRtg~~~~~~~i~l~~G~~  141 (534)
T 3ma8_A           66 NVESLIGLIDKGMSVARLNFSHG-DHE---SHFKTLQNIREAAKARPHSTVGIMLDTKGPEIRTGMLEGGKPIELKAGQT  141 (534)
T ss_dssp             SHHHHHHHHHHTCCEEEEETTSS-CHH---HHHHHHHHHHHHHHHSTTSCCEEEEECCCSCCBBCCCSSSSCCCCCTTC-
T ss_pred             CHHHHHHHHHCCCCEEEEECCCC-CHH---HHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCEEEECCCCE
T ss_conf             99999999987999999978999-999---99999999999998648994289995899864787627996588448999


Q ss_pred             EECCHHHHCCC-C---CCCHHHHHHHHCCCCCEEEECCHHH---HC----------------CCCCCEEECCCC---CCC
Q ss_conf             98242430343-2---1000246653124364247544044---01----------------137633302332---100
Q gi|254780653|r  114 ILAENVRFYSE-E---ERNDPDFVRMLSRNGDFYINDAFSV---SH----------------RAHASITGLSHL---LPS  167 (400)
Q Consensus       114 lLLEN~Rf~~~-E---~~n~~~f~k~La~laDiyVnDAF~~---aH----------------R~haS~~gi~~~---lps  167 (400)
                      +-|-.-.-..+ +   .-+.+++.+.+..--.+|+.|.--.   .-                +++.++. +|..   +|.
T Consensus       142 v~l~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~I~idDG~i~l~V~~~~~~~v~~~v~~~G~L~s~KgVn-ip~~~~~lp~  220 (534)
T 3ma8_A          142 LKITTDYSMLGNSECISCSYSLLPKSVQIGSTVLIADGSLSTQVLEIGDDFIVCKVLNSVTIGERKNMN-LPGCKVHLPI  220 (534)
T ss_dssp             -CEESCCSSCCCSSCEEBSCTTHHHHCCTTCEEEETTTTEEEEEEEECSSEEEEEECSCCCCCSSCBEE-CTTCCCCSCS
T ss_pred             EEEEECCCCCCCCCEEEECCHHHHHHCCCCCEEEEECCCEEEEEEEECCCEEEEEEECCEEECCCCEEE-ECCCCCCCCC
T ss_conf             999948866898667851506767535789989993795489999964985999975254834885587-3554566654


Q ss_pred             -------------------CCCHH---HHHHHHHHHHHCCCCCC------CEEEEEEECCHHHHHHH--HHHHHHCCCEE
Q ss_conf             -------------------03325---56577765331016678------71899960780255788--99877306888
Q gi|254780653|r  168 -------------------YIGRA---MQKELSMLESCFSESKK------PLVAIVGGSKVSTKITL--LINLVKKVDKL  217 (400)
Q Consensus       168 -------------------~aG~l---~ekEi~~L~~~l~~~~~------P~v~IiGGaKisdKi~~--i~~L~~k~D~i  217 (400)
                                         +.+..   -.+.+..+.+++....+      +-+-|+  |||+++-.+  ++..++.+|.|
T Consensus       221 ltekD~~di~~~a~~~~vD~valSFV~s~~Dv~~~r~~l~~~~~~~~~~~~~i~ii--aKIE~~~al~nldeI~~~sDgi  298 (534)
T 3ma8_A          221 IGDKDRHDIVDFALKYNLDFIALSFVQNGADVQLCRQIISENTQYSNGIPSSIKII--SKIENLEGVINFDSICSESDGI  298 (534)
T ss_dssp             SCHHHHHHHHTTTTTTTCSEEEECSCCSHHHHHHHHHHHHHCCTTTTTCCCCCEEE--EEECSHHHHHTHHHHHHHSSEE
T ss_pred             CCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEH--HHHHCCHHHCCHHHHHCCCCEE
T ss_conf             55462999999998759999999065707889999998875254323566331113--5332402110177661158689


Q ss_pred             EECHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCC--CCCCCCCE-ECCCCCC
Q ss_conf             86205789999983014343333100001356889987530245543035411343232333--31025321-2013345
Q gi|254780653|r  218 VIGGGMANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIP--TQVVSAQS-VPLDSII  294 (400)
Q Consensus       218 iigG~lantfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~--~~~~~~~~-i~~~~~i  294 (400)
                      ++.=|=       .|.+++-    ++.-...|.++.++.+.+.++++-+...-+=- .+..+  .++.++.. +-++--.
T Consensus       299 mVaRGD-------Lg~ei~~----e~vp~~Qk~ii~~c~~~gkPvivATqmLeSM~-~~p~PTRAEvsDVanav~dGaD~  366 (534)
T 3ma8_A          299 MVARGD-------LGMEIPP----EKIFVAQKCMISKCNVAGKPVVTATQMLESMI-KSNRPTRAEMTDVANAVLDGSDC  366 (534)
T ss_dssp             EEEHHH-------HHHHSCH----HHHHHHHHHHHHHHHHHTCCEEEESSSSGGGG-TSSSCCHHHHHHHHHHHHHTCSE
T ss_pred             EEECCC-------CCCCCCH----HHHHHHHHHHHHHHHHCCCCEEEECCHHHHHH-HCCCCCCHHHHHHHHHHHCCCCE
T ss_conf             997676-------3243898----89889999999999974992999880167787-48998607799999998646847


Q ss_pred             C---------CCCCHHHHHHHHHHCCCCEEEEECCCCCC----------CCCCHHHHHHHHHHHHHHHHCCCCCEEEE-C
Q ss_conf             7---------65200356777640577679997662532----------27436588999999998611148858997-4
Q gi|254780653|r  295 L---------DVGFKTVEYIKQVIAQARTVMWNGPLGVF----------EIEPFDRATVEVAHYVAKLTKERRIISIA-G  354 (400)
Q Consensus       295 ~---------DIGp~Ti~~~~~~I~~AktI~WNGP~Gvf----------E~~~F~~GT~~l~~~ia~~~~~~~~~siv-G  354 (400)
                      +         .--.++++.+..++.+++.-+|--...-.          -.+..+.+..++++.+     ..+++.+. =
T Consensus       367 vmLs~ETA~G~~P~e~V~~~~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~eaia~aAv~lA~~l-----~AkaIVv~T~  441 (534)
T 3ma8_A          367 VMLSGETANGAFPFDAVNVMSRVCAQAETCIDYPVLYHAIHSSVPKPVAVPEAIACSAVESAHDV-----NAKLIITITE  441 (534)
T ss_dssp             EEESHHHHTCSCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHH-----TCSEEEEECS
T ss_pred             EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC-----CCCEEEEECC
T ss_conf             98724314677989999999999999986444666776654215788888999999999997247-----9888999879


Q ss_pred             CCHHHHHHHHCCCCCCC
Q ss_conf             80469989984887686
Q gi|254780653|r  355 GGDTITALAHAGISNEF  371 (400)
Q Consensus       355 GGdT~aai~~~g~~~~~  371 (400)
                      -|.|+..+.++--.-.+
T Consensus       442 SG~TAr~ISr~RP~~PI  458 (534)
T 3ma8_A          442 TGNTARLISKYRPSQTI  458 (534)
T ss_dssp             SSHHHHHHHHTCCSSEE
T ss_pred             CCHHHHHHHHHCCCCCE
T ss_conf             82899999955979988


No 36 
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=44.58  E-value=15  Score=16.12  Aligned_cols=125  Identities=10%  Similarity=0.146  Sum_probs=61.7

Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCC-CCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCHHH-HH-----HHHCCCCCEE
Q ss_conf             332247888876431013354566-6310255665531364648982424303432100024-66-----5312436424
Q gi|254780653|r   71 KDCSLFKVVSIAESILHKNILFVN-DCIGSTLSQSIASLSEGGIILAENVRFYSEEERNDPD-FV-----RMLSRNGDFY  143 (400)
Q Consensus        71 ~~~Sl~~v~~~l~~~l~~~V~fi~-d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n~~~-f~-----k~La~laDiy  143 (400)
                      +..|+..++.++.+ -|.+|.++. |++-..+.++.+.+..     .-++-|+..+...|+. .+     .....-.|+-
T Consensus       142 KTTt~aKlA~~~~~-~g~kv~l~~~Dt~R~aA~eQL~~~a~-----~~~v~~~~~~~~~d~~~v~~~a~~~a~~~~~D~v  215 (328)
T 3e70_C          142 KTTTIAKLANWLKN-HGFSVVIAASDTFRAGAIEQLEEHAK-----RIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVV  215 (328)
T ss_dssp             HHHHHHHHHHHHHH-TTCCEEEEEECCSSTTHHHHHHHHHH-----HTTCEEECCCTTCCHHHHHHHHHHHHHHHTCSEE
T ss_pred             CCCHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHH-----HHCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf             65438999999996-69960576323245079999999988-----7357614678999999999999999998699989


Q ss_pred             EECCHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHC--CCEEEE
Q ss_conf             7544044011376333023321000332556577765331016678718999607802557889987730--688886
Q gi|254780653|r  144 INDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKK--VDKLVI  219 (400)
Q Consensus       144 VnDAF~~aHR~haS~~gi~~~lps~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k--~D~iii  219 (400)
                      +-|--|.+|++.                .+..|+..+.++. +|.. .+.++-+..=.+-+..+..+.+.  .+.+++
T Consensus       216 lIDTaGR~~~~~----------------~l~~el~~i~~~~-~p~~-~llV~da~~g~~~~~~~~~f~~~~~~~g~Il  275 (328)
T 3e70_C          216 LIDTAGRSETNR----------------NLMDEMKKIARVT-KPNL-VIFVGDALAGNAIVEQARQFNEAVKIDGIIL  275 (328)
T ss_dssp             EEEECCSCCTTT----------------CHHHHHHHHHHHH-CCSE-EEEEEEGGGTTHHHHHHHHHHHHSCCCEEEE
T ss_pred             EECCCCCCCCCH----------------HHHHHHHHHHHHC-CCCE-EEEECCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf             867877761309----------------9999999999762-9974-7762342122899999999862289986999


No 37 
>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A
Probab=43.93  E-value=4.1  Score=19.71  Aligned_cols=45  Identities=13%  Similarity=0.042  Sum_probs=29.2

Q ss_pred             CCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             85777258999988989999988980999913778889847332247888876
Q gi|254780653|r   30 DGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIA   82 (400)
Q Consensus        30 ~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l   82 (400)
                      ||++.|+..-..+...|+.|.++|.++++.|  |||      ..++.+.++.+
T Consensus        10 DGTLl~~~~~~~~~~al~~l~~~G~~v~iaT--GR~------~~~~~~~~~~l   54 (249)
T 2zos_A           10 DKTLIPGYEPDPAKPIIEELKDMGFEIIFNS--SKT------RAEQEYYRKEL   54 (249)
T ss_dssp             STTTCTTSCSGGGHHHHHHHHHTTEEEEEBC--SSC------HHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHCCCEEEEEE--CCC------HHHHHHHHHHH
T ss_conf             8767799988899999999998799899993--888------99999999983


No 38 
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=43.25  E-value=16  Score=15.99  Aligned_cols=36  Identities=22%  Similarity=0.315  Sum_probs=29.4

Q ss_pred             HCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf             015996899982016713185777258999988989999988980999913
Q gi|254780653|r   11 RDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSH   61 (400)
Q Consensus        11 ~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH   61 (400)
                      -|++||+|||       +..|++        +..-++.|++.||+|.++|.
T Consensus         8 l~l~~~~vlv-------vGgG~v--------A~rK~~~ll~~ga~v~via~   43 (457)
T 1pjq_A            8 CQLRDRDCLI-------VGGGDV--------AERKARLLLEAGARLTVNAL   43 (457)
T ss_dssp             ECCBTCEEEE-------ECCSHH--------HHHHHHHHHHTTBEEEEEES
T ss_pred             EECCCCEEEE-------ECCCHH--------HHHHHHHHHHCCCEEEEECC
T ss_conf             9828983999-------899899--------99999999878987999938


No 39 
>3khd_A Pyruvate kinase; malaria, structural genomics, structural genomics consortium, SGC; 2.70A {Plasmodium falciparum 3D7}
Probab=43.22  E-value=11  Score=16.99  Aligned_cols=303  Identities=15%  Similarity=0.164  Sum_probs=142.5

Q ss_pred             HHHHHHHHHHCCCEEEEE--ECCCCCCCCCCCCCCH-HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCH
Q ss_conf             889899999889809999--1377888984733224-7888876431013354566631025566553136464898242
Q gi|254780653|r   42 VVPTILELVEKKAKVVIF--SHLGRPQSKSDKDCSL-FKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAEN  118 (400)
Q Consensus        42 ~~pTI~~l~~~~akvii~--SH~GRPkg~~~~~~Sl-~~v~~~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN  118 (400)
                      ...+|+.|+++|..+.=+  ||- ..    +....+ ..+.+..+..++++|...-|.-|++.+  +..++++++.|-+|
T Consensus        60 ~~e~l~~li~aG~dv~RiN~SHg-~~----e~~~~~i~~ir~~~~~~~~~~v~Il~Dl~GpkiR--tg~~~~~~i~l~~G  132 (520)
T 3khd_A           60 SVETLVKLIDAGMDICRFNFSHG-SH----EDHKEMFNNVLKAQELRPNCLLGMLLDTKGPEIR--TGFLKNKEVHLKEG  132 (520)
T ss_dssp             SHHHHHHHHHHTEEEEEEETTSS-CH----HHHHHHHHHHHHHHHHCSSCCCEEEEECCCCCEE--BCEEC---------
T ss_pred             CHHHHHHHHHCCCCEEEEECCCC-CH----HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEE--EEECCCCCEEECCC
T ss_conf             99999999986999999989999-99----9999999999999874589933899978898447--87537983896689


Q ss_pred             HHH--CCC-CC--------CCHHHHHHHHCCCCCEEEECCHH---HHCC----------------CCCCEEECCCC---C
Q ss_conf             430--343-21--------00024665312436424754404---4011----------------37633302332---1
Q gi|254780653|r  119 VRF--YSE-EE--------RNDPDFVRMLSRNGDFYINDAFS---VSHR----------------AHASITGLSHL---L  165 (400)
Q Consensus       119 ~Rf--~~~-E~--------~n~~~f~k~La~laDiyVnDAF~---~aHR----------------~haS~~gi~~~---l  165 (400)
                      -++  ..+ |.        -+.+++.+.+..--.+|+.|.--   +--.                ++-++ -+|..   +
T Consensus       133 ~~v~l~~~~~~~~~~~~i~v~~~~l~~~vk~Gd~I~idDG~i~l~V~~~~~~~i~~~V~~gG~L~s~Kgv-n~p~~~~~~  211 (520)
T 3khd_A          133 SKLKLVTDYEFLGDETCIACSYKKLPQSVKPGNIILIADGSVSCKVLETHEDHVITEVLNSAVIGERKNM-NLPNVKVDL  211 (520)
T ss_dssp             --CEEESCTTCEECTTEEEBSCTTHHHHCCC-CEEEETTTTEEEEEEEECSSCEEEEECC-CCCCSSCEE-ECTTSCCCS
T ss_pred             CEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCEEEEECCCCEEEEEECCCCEEEEEEEECCEECCCCEE-ECCCCCCCC
T ss_conf             9999985886689865686224432233799988998478626999970588069999328684688558-505765577


Q ss_pred             CC-------------------CCCHH---HHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHH--HHHHHHCCCEEEECH
Q ss_conf             00-------------------03325---5657776533101667871899960780255788--998773068888620
Q gi|254780653|r  166 PS-------------------YIGRA---MQKELSMLESCFSESKKPLVAIVGGSKVSTKITL--LINLVKKVDKLVIGG  221 (400)
Q Consensus       166 ps-------------------~aG~l---~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~--i~~L~~k~D~iiigG  221 (400)
                      |.                   +.+..   -.+++..+.+++.+.. +.+-|+  |||.++-.+  ++.+++.+|.|++.=
T Consensus       212 ~~ltekd~~~~~~~a~~~~vD~ialSfV~s~~di~~~r~~l~~~g-~~~~Ii--aKIE~~~al~nl~eI~~~sDgimIaR  288 (520)
T 3khd_A          212 PIISEKDKNDILNFAIPMGCNFIAASFIQSADDVRLIRNLLGPRG-RHIKII--PKIENIEGIIHFDKILAESDGIMIAR  288 (520)
T ss_dssp             CSSCHHHHHHHHHTHHHHTCCEEEETTCCSHHHHHHHHHHHTTTT-TTSEEE--EEECSHHHHHTHHHHHHHSSCEEECH
T ss_pred             CCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCC-CCEEEE--EEEHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf             766500399999999874998675337785677899999999759-840125--42122776650677885088899988


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCC--CCCCCCE-ECCCCCC----
Q ss_conf             57899999830143433331000013568899875302455430354113432323333--1025321-2013345----
Q gi|254780653|r  222 GMANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPT--QVVSAQS-VPLDSII----  294 (400)
Q Consensus       222 ~lantfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~--~~~~~~~-i~~~~~i----  294 (400)
                      |       -.|.++|-    ++.-...+.++.++.+.+.++++-+...-+- ..+..|.  ++.++.. +-++--.    
T Consensus       289 G-------DLg~e~~~----e~vp~~Qk~Ii~~~~~~~kPvivATqmLeSM-~~~p~PTRAEv~Dvanav~dG~D~vmLs  356 (520)
T 3khd_A          289 G-------DLGMEISP----EKVFLAQKLMISKCNLQGKPIITATQMLESM-TKNPRPTRAEVTDVANAVLDGTDCVMLS  356 (520)
T ss_dssp             H-------HHTTTSCG----GGHHHHHHHHHHHHHHHTCCEEECCCCCGGG-GTCSSCCHHHHHHHHHHHHHTCSEEEES
T ss_pred             C-------CCCCCCCH----HHHHHHHHHHHHHHHHCCCCEEEECHHHHHH-HHCCCCCCHHHHHHHHHHHCCCCEEEEC
T ss_conf             8-------50201899----8956989999999997299699987689988-6288775334787888876267479973


Q ss_pred             -----CCCCCHHHHHHHHHHCCCCEEEEECCCCC---CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEC---CCHHHHHHH
Q ss_conf             -----76520035677764057767999766253---2274365889999999986111488589974---804699899
Q gi|254780653|r  295 -----LDVGFKTVEYIKQVIAQARTVMWNGPLGV---FEIEPFDRATVEVAHYVAKLTKERRIISIAG---GGDTITALA  363 (400)
Q Consensus       295 -----~DIGp~Ti~~~~~~I~~AktI~WNGP~Gv---fE~~~F~~GT~~l~~~ia~~~~~~~~~sivG---GGdT~aai~  363 (400)
                           =.--.++++.+.+++..|+..+|....--   .+.+....-+.+++.+......+.++-.||.   -|.|+..+.
T Consensus       357 ~ETa~G~~P~~~V~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aIa~aA~~lA~~l~akaIVv~T~SG~TAr~vS  436 (520)
T 3khd_A          357 GETAGGKFPVEAVTIMSKICLEAEACIDYKLLYQSLVNAIETPISVQEAVARSAVETAESIQASLIIALTETGYTARLIA  436 (520)
T ss_dssp             HHHHSCSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH
T ss_conf             56568868999999999999999834433455676541145775379999999999987469999999889858999999


Q ss_pred             HCCC
Q ss_conf             8488
Q gi|254780653|r  364 HAGI  367 (400)
Q Consensus       364 ~~g~  367 (400)
                      ++--
T Consensus       437 r~RP  440 (520)
T 3khd_A          437 KYKP  440 (520)
T ss_dssp             HTCC
T ss_pred             HHCC
T ss_conf             5497


No 40 
>1xpj_A Hypothetical protein; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics, unknown function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18
Probab=42.87  E-value=16  Score=15.95  Aligned_cols=30  Identities=13%  Similarity=0.024  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf             899998898999998898099991377888
Q gi|254780653|r   37 TRIERVVPTILELVEKKAKVVIFSHLGRPQ   66 (400)
Q Consensus        37 ~RI~~~~pTI~~l~~~~akvii~SH~GRPk   66 (400)
                      .=+...+.+|+.|.+.|.+|+|.|+-|...
T Consensus        24 ~P~~~~Ie~i~~l~~~G~~Iii~TaR~~~~   53 (126)
T 1xpj_A           24 LPRLDVIEQLREYHQLGFEIVISTARNMRT   53 (126)
T ss_dssp             CBCHHHHHHHHHHHHTTCEEEEEECTTTTT
T ss_pred             CCCHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf             958999999999997899899997774334


No 41 
>3k35_A Mono-ADP-ribosyltransferase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, structural genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=41.81  E-value=16  Score=15.84  Aligned_cols=57  Identities=14%  Similarity=0.101  Sum_probs=34.7

Q ss_pred             CCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             7871899960780255788998773068888620578999998301434333310000135688998753024554
Q gi|254780653|r  188 KKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEII  263 (400)
Q Consensus       188 ~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~  263 (400)
                      -||-++-.|-+=-+..+......++++|-+|+-|               .|+.    +.-+..+...+.+++.+++
T Consensus       181 lrP~VV~FgE~lp~~~~~~~~~~~~~aDllIvvG---------------TSl~----V~pa~~l~~~a~~~g~~vi  237 (318)
T 3k35_A          181 LRDTILDWEDSLPDRDLALADEASRNADLSITLG---------------TSLQ----IRPSGNLPLATKRRGGRLV  237 (318)
T ss_dssp             EEECCCCTTCCCCHHHHHHHHHHHHTCSEEEEES---------------CCCC----STTGGGHHHHHHHTTCEEE
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEC---------------CCCE----ECCHHHHHHHHHHCCCEEE
T ss_conf             6897201467788899999999985799999979---------------8877----8777479999996499599


No 42 
>1ii8_B RAD50 ABC-ATPase; MRE11, DNA double-strand break repair, replication; 3.02A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=41.44  E-value=17  Score=15.81  Aligned_cols=44  Identities=5%  Similarity=0.119  Sum_probs=26.3

Q ss_pred             HHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf             640577679997662532274365889999999986111488589974
Q gi|254780653|r  307 QVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAG  354 (400)
Q Consensus       307 ~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~~~~~~sivG  354 (400)
                      -.+.++...|+--|.+..-.    .+...+.+.+.+..++...+-+|-
T Consensus       103 ~l~~~~~~lilDEPt~~LD~----~~~~~l~~~l~~l~~~~~tiiviS  146 (174)
T 1ii8_B          103 YLAGEISLLILDEPTPYLDE----ERRRKLITIMERYLKKIPQVILVS  146 (174)
T ss_dssp             HHHSSCSEEEEECCSSSSCS----HHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred             HHCCCCCEEEECCCCCCCCH----HHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             85689988986598667699----999999999999995699899995


No 43 
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=40.78  E-value=17  Score=15.74  Aligned_cols=78  Identities=13%  Similarity=0.137  Sum_probs=50.0

Q ss_pred             HHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHHHHH
Q ss_conf             653310166787189996078025578899877306888862057899999830143433--331000013568899875
Q gi|254780653|r  179 MLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRS--LCQRDFSDNVHQIAWEAK  256 (400)
Q Consensus       179 ~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~S--l~e~~~~~~ak~i~~~a~  256 (400)
                      .++.+.+...++.+++    +..|.+..++.+++.+|.|++-+           .+.|.+  .+.++.++.++++.+...
T Consensus        98 ~i~~i~~~g~~~Gial----np~T~~~~i~~~l~~~D~vl~M~-----------V~pG~~Gq~f~~~~l~ki~~l~~~~~  162 (231)
T 3ctl_A           98 LIDEIRRHDMKVGLIL----NPETPVEAMKYYIHKADKITVMT-----------VDPGFAGQPFIPEMLDKLAELKAWRE  162 (231)
T ss_dssp             HHHHHHHTTCEEEEEE----CTTCCGGGGTTTGGGCSEEEEES-----------SCTTCSSCCCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCEEEEEE----CCCCCHHHHHHHHCCCCEEEEEE-----------ECCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             9999997798799995----69997056552313328899957-----------76887875325889999999999998


Q ss_pred             HCCCCCCCEEEEECC
Q ss_conf             302455430354113
Q gi|254780653|r  257 RSACEIIVPRDVVVA  271 (400)
Q Consensus       257 ~~~~~I~lP~D~~v~  271 (400)
                      +++.++.+-+|--+.
T Consensus       163 ~~~~~~~I~VDGGIn  177 (231)
T 3ctl_A          163 REGLEYEIEVDGSCN  177 (231)
T ss_dssp             HHTCCCEEEEESCCS
T ss_pred             HCCCCCEEEEECCCC
T ss_conf             349993699989988


No 44 
>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme., structural genomics; 1.70A {Escherichia coli O157} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*
Probab=40.76  E-value=17  Score=15.74  Aligned_cols=46  Identities=15%  Similarity=0.212  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHCCCEEEEEECCCCC-CCCCCCCCCHHHHHHHHHHHC
Q ss_conf             99889899999889809999137788-898473322478888764310
Q gi|254780653|r   40 ERVVPTILELVEKKAKVVIFSHLGRP-QSKSDKDCSLFKVVSIAESIL   86 (400)
Q Consensus        40 ~~~~pTI~~l~~~~akvii~SH~GRP-kg~~~~~~Sl~~v~~~l~~~l   86 (400)
                      ..+.++|+.|-++|.+++++|++.-. ++.. ....+..+...+.+.+
T Consensus        45 pgv~e~L~~L~~~g~~i~ivTnq~~i~~~~~-~~~~~~~~~~~~~~~l   91 (176)
T 2fpr_A           45 PGVIPQLLKLQKAGYKLVMITNQDGLGTQSF-PQADFDGPHNLMMQIF   91 (176)
T ss_dssp             TTHHHHHHHHHHTTEEEEEEEECTTTTBTTB-CHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCCEEEEEECCCCCCCCHH-HHHHHHHHHHHHHHHH
T ss_conf             5589999999875985999958974444240-5999999999999876


No 45 
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=39.82  E-value=18  Score=15.65  Aligned_cols=34  Identities=15%  Similarity=0.141  Sum_probs=19.2

Q ss_pred             CEECCCCCCCCCCCHHHHHHHHHHCC-CCEEEEECC
Q ss_conf             21201334576520035677764057-767999766
Q gi|254780653|r  286 QSVPLDSIILDVGFKTVEYIKQVIAQ-ARTVMWNGP  320 (400)
Q Consensus       286 ~~i~~~~~i~DIGp~Ti~~~~~~I~~-AktI~WNGP  320 (400)
                      ++.+..| +.||--+-.+...+.|.+ |...+|.|.
T Consensus       322 d~~~~~w-~~~~~~~~~~~~~~lig~Ga~a~Vy~~~  356 (540)
T 3en9_A          322 DMVEVNW-IKEIKGKKRKIPEHLIGKGAEADIKRDS  356 (540)
T ss_dssp             TTSCCCC-C------------------CCEEEEEEE
T ss_pred             CCCCCCH-HCCCCCCCCCCCHHHHCCCCEEEEEEEE
T ss_conf             2130441-0057654457737662567638999999


No 46 
>3ix9_A Dihydrofolate reductase; central beta sheet surrounded by 4 alpha helices, oxidoreductase; HET: NDP MTX; 1.95A {Streptococcus pneumoniae}
Probab=39.79  E-value=15  Score=16.04  Aligned_cols=25  Identities=20%  Similarity=0.368  Sum_probs=19.3

Q ss_pred             EEEEEEECCHHHHHHHHHHHHHCCCEEEECH
Q ss_conf             1899960780255788998773068888620
Q gi|254780653|r  191 LVAIVGGSKVSTKITLLINLVKKVDKLVIGG  221 (400)
Q Consensus       191 ~v~IiGGaKisdKi~~i~~L~~k~D~iiigG  221 (400)
                      -+.|+||+.|=      +.+++.+|.|++.=
T Consensus       116 ~i~VIGG~~IY------~~~l~~~d~i~lT~  140 (190)
T 3ix9_A          116 NLYIVGGKQIF------QAFEPYLDEVIVTH  140 (190)
T ss_dssp             CEEEEECHHHH------HHHGGGCSEEEEEE
T ss_pred             EEEEECCHHHH------HHHHHHCCEEEEEE
T ss_conf             39996568999------99998799999999


No 47 
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomics; 1.60A {Pyrococcus horikoshii OT3} SCOP: c.108.1.10
Probab=39.75  E-value=12  Score=16.73  Aligned_cols=34  Identities=18%  Similarity=0.319  Sum_probs=24.1

Q ss_pred             CCEECCHH-HH-HHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf             85777258-99-99889899999889809999137788
Q gi|254780653|r   30 DGKVADVT-RI-ERVVPTILELVEKKAKVVIFSHLGRP   65 (400)
Q Consensus        30 ~g~I~d~~-RI-~~~~pTI~~l~~~~akvii~SH~GRP   65 (400)
                      ||+++++. +| .+...+|+.|.++|.++++.|  |||
T Consensus        11 DGTL~~~~~~i~~~~~~al~~l~~~G~~v~~~T--GR~   46 (231)
T 1wr8_A           11 DGTITYPNRMIHEKALEAIRRAESLGIPIMLVT--GNT   46 (231)
T ss_dssp             TTTTBCTTSCBCHHHHHHHHHHHHTTCCEEEEC--SSC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEC--CCC
T ss_conf             767735969329999999999997799899988--996


No 48 
>3niw_A Haloacid dehalogenase-like hydrolase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Bacteroides thetaiotaomicron}
Probab=38.62  E-value=16  Score=15.88  Aligned_cols=34  Identities=32%  Similarity=0.587  Sum_probs=24.9

Q ss_pred             CCEEC-CHHHH-HHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf             85777-25899-99889899999889809999137788
Q gi|254780653|r   30 DGKVA-DVTRI-ERVVPTILELVEKKAKVVIFSHLGRP   65 (400)
Q Consensus        30 ~g~I~-d~~RI-~~~~pTI~~l~~~~akvii~SH~GRP   65 (400)
                      ||+++ ++.+| ...+..|+.|.++|-++++.|  |||
T Consensus        13 DGTL~~~~~~i~~~~~~al~~l~~~g~~v~i~T--GR~   48 (279)
T 3niw_A           13 DGTLTNSKKEISSRNRETLIRIQEQGIRLVLAS--GRP   48 (279)
T ss_dssp             CCCCSCTTSCCCHHHHHHHHHHHHTTCEEEEEC--SSC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEC--CCC
T ss_conf             877738959339999999999997899999999--998


No 49 
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, biosynthetic protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Probab=38.22  E-value=19  Score=15.49  Aligned_cols=96  Identities=21%  Similarity=0.216  Sum_probs=54.5

Q ss_pred             CCCCHHHHCCCCCEEEEEEECCCCCC-CCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCC--------CCCCCCCCCC
Q ss_conf             87710100159968999820167131-85777258999988989999988980999913778--------8898473322
Q gi|254780653|r    4 LRTMNDLRDIRGLRCLLRVDWNVPFI-DGKVADVTRIERVVPTILELVEKKAKVVIFSHLGR--------PQSKSDKDCS   74 (400)
Q Consensus         4 ~~ti~d~~d~~gk~VlvRvD~NvPi~-~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GR--------Pkg~~~~~~S   74 (400)
                      |+-.++. ++.|+||||       .. .|-|        -....+.|+++|.+|+++--+.|        -+ ......+
T Consensus         1 ~~~~~~~-~~~g~kILV-------TG~tGfI--------G~~l~~~Ll~~G~~V~~iD~l~~~~~~~~~~~~-~~~~~~~   63 (404)
T 1i24_A            1 MRGSHHH-HHHGSRVMV-------IGGDGYC--------GWATALHLSKKNYEVCIVDNLVRRLFDHQLGLE-SLTPIAS   63 (404)
T ss_dssp             ------------CEEEE-------ETTTSHH--------HHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCC-CSSCCCC
T ss_pred             CCCCCCC-CCCCCEEEE-------ECCCCHH--------HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC-CCCCCCC
T ss_conf             9887678-999998999-------8998689--------999999999784989999467765321102212-1343321


Q ss_pred             HHHHHHHHHHHCCCCCCCCC-CCCHHHH-HHHHHHCCCCCEEEC
Q ss_conf             47888876431013354566-6310255-665531364648982
Q gi|254780653|r   75 LFKVVSIAESILHKNILFVN-DCIGSTL-SQSIASLSEGGIILA  116 (400)
Q Consensus        75 l~~v~~~l~~~l~~~V~fi~-d~~g~~~-~~~i~~l~~g~ilLL  116 (400)
                      .....+..+.+.+.++.|+. |+..... .+.++..++-.|+-+
T Consensus        64 ~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~d~ViH~  107 (404)
T 1i24_A           64 IHDRISRWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHF  107 (404)
T ss_dssp             HHHHHHHHHHHHCCCCEEEESCTTSHHHHHHHHHHHCCSEEEEC
T ss_pred             HHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEC
T ss_conf             47777777751378727998437899999999985699789985


No 50 
>2w3w_A Dihydrofolate reductase; nonclassical antifolates, one-carbon metabolism, lipophilic antifolates, NADP, oxidoreductase; HET: VG9 NDP; 1.60A {Mycobacterium avium} PDB: 2w3v_A*
Probab=37.41  E-value=16  Score=16.00  Aligned_cols=24  Identities=8%  Similarity=0.283  Sum_probs=18.4

Q ss_pred             EEEEEEECCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf             189996078025578899877306888862
Q gi|254780653|r  191 LVAIVGGSKVSTKITLLINLVKKVDKLVIG  220 (400)
Q Consensus       191 ~v~IiGGaKisdKi~~i~~L~~k~D~iiig  220 (400)
                      -+.|+||+++      .+.+++.+|.+.+.
T Consensus        98 ~i~IiGG~~I------Y~~~l~~~d~l~iT  121 (167)
T 2w3w_A           98 APWVIGGAQI------YLLALPHATRCEVT  121 (167)
T ss_dssp             SCEEEECHHH------HHHHGGGCSEEEEE
T ss_pred             EEEEECCHHH------HHHHHHHCCEEEEE
T ss_conf             6999824999------99999768999999


No 51 
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}
Probab=37.27  E-value=19  Score=15.39  Aligned_cols=59  Identities=20%  Similarity=0.105  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCCCCCH---HHHHHHHHHHCCCCCCCCCCC
Q ss_conf             8999988989999988-98099991377888984733224---788887643101335456663
Q gi|254780653|r   37 TRIERVVPTILELVEK-KAKVVIFSHLGRPQSKSDKDCSL---FKVVSIAESILHKNILFVNDC   96 (400)
Q Consensus        37 ~RI~~~~pTI~~l~~~-~akvii~SH~GRPkg~~~~~~Sl---~~v~~~l~~~l~~~V~fi~d~   96 (400)
                      .-.+...+.++.++++ +-++-=++....+.|..- ..+|   ...++.|+-.++.|+.-++..
T Consensus        51 ~H~~~l~~~i~~~l~~a~i~~~~id~ia~t~gPGl-~~~l~vG~~~Ak~la~~~~~Pli~v~Hl  113 (334)
T 3eno_A           51 HHSEVIDTVISRALEKAKISIHDIDLIGFSMGPGL-APSLRVTATAARTISVLTGKPIIGVNHP  113 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSSSC-HHHHHHHHHHHHHHHHHHTCCCEEECHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHCCEEEECCCCCC-CCCCCHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf             99999999999999974986433026884357873-2242067999999887426784523518


No 52 
>2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown function, NPPSFA; 2.60A {Thermus thermophilus HB8}
Probab=36.70  E-value=16  Score=15.89  Aligned_cols=46  Identities=11%  Similarity=0.023  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHCCCEEEEEEC--CCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             988989999988980999913--778889847332247888876431013354
Q gi|254780653|r   41 RVVPTILELVEKKAKVVIFSH--LGRPQSKSDKDCSLFKVVSIAESILHKNIL   91 (400)
Q Consensus        41 ~~~pTI~~l~~~~akvii~SH--~GRPkg~~~~~~Sl~~v~~~l~~~l~~~V~   91 (400)
                      ....+|+...++|+..||.=|  +-+|...    .+ .+..+.+++++...|.
T Consensus        45 ~t~~vi~~Ai~~g~dlIItHHP~~f~~~~~----~~-~~~~~~i~~li~~~I~   92 (242)
T 2yyb_A           45 AGEAIFRKALEEEVDFLIVHHGLFWGKPFP----IV-GHHKRRLETLFQGGIN   92 (242)
T ss_dssp             CSHHHHHHHHHTTCSEEEEEECSCSSCCCC----SC-HHHHHHHHHHHHTTCE
T ss_pred             CCHHHHHHHHHCCCCEEEECCCCCCCCCCC----CC-CCHHHHHHHHHHCCCC
T ss_conf             999999999987999999798501047654----45-6079999999978961


No 53 
>2wdc_A SOXB, sulfur oxidation protein SOXB; sulfur-sulfur hydrolysis, sulfur oxidation pathway, Cys S-thiosulfonate, hydrolase; 1.50A {Thermus thermophilus} PDB: 2wdd_A* 2wde_A 2wdf_A
Probab=35.71  E-value=20  Score=15.24  Aligned_cols=26  Identities=27%  Similarity=0.321  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHCCCE-EEEEECCCC
Q ss_conf             99988989999988980-999913778
Q gi|254780653|r   39 IERVVPTILELVEKKAK-VVIFSHLGR   64 (400)
Q Consensus        39 I~~~~pTI~~l~~~~ak-vii~SH~GR   64 (400)
                      +.+.-..++.|.++|+. ||++||+|.
T Consensus       240 ~~~~~~~v~~lr~~g~DvIV~LsH~G~  266 (562)
T 2wdc_A          240 ERRLQEAVDKARAEGANAVVLLSHNGM  266 (562)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEEECSCH
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             999999999987538988999605785


No 54 
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=35.54  E-value=21  Score=15.22  Aligned_cols=29  Identities=7%  Similarity=0.056  Sum_probs=16.2

Q ss_pred             ECCHHHHCCCC---------CCEEECCCCCCC-------CCCHHH
Q ss_conf             54404401137---------633302332100-------033255
Q gi|254780653|r  145 NDAFSVSHRAH---------ASITGLSHLLPS-------YIGRAM  173 (400)
Q Consensus       145 nDAF~~aHR~h---------aS~~gi~~~lps-------~aG~l~  173 (400)
                      ||.+.+||+-+         -.++|+|+-...       +.||-=
T Consensus       114 dgS~~~a~~L~~~~~~~~~~i~vIgIPKTIDNDl~~tD~t~GF~T  158 (419)
T 3hno_A          114 GDSADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITDCCPGFGS  158 (419)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCEEEEEECCTTCCCSSSSSCTTHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEECCCCHHH
T ss_conf             078999999999999708994189612432578776332764788


No 55 
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A
Probab=35.50  E-value=17  Score=15.80  Aligned_cols=24  Identities=17%  Similarity=0.488  Sum_probs=18.7

Q ss_pred             EEEEEEECCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf             189996078025578899877306888862
Q gi|254780653|r  191 LVAIVGGSKVSTKITLLINLVKKVDKLVIG  220 (400)
Q Consensus       191 ~v~IiGGaKisdKi~~i~~L~~k~D~iiig  220 (400)
                      -+.|+||+.+      .+.+++.+|.+.+.
T Consensus        96 ~I~ViGG~~I------y~~~l~~~dei~iT  119 (162)
T 1vdr_A           96 TAYVIGGAAI------YALFQPHLDRMVLS  119 (162)
T ss_dssp             CEEEEECHHH------HHHHGGGCSEEEEE
T ss_pred             EEEEECCHHH------HHHHHHHCCEEEEE
T ss_conf             6999877899------99998743857999


No 56 
>3dau_A Dihydrofolate reductase; oxidoreductase, pseudo-rossmann fold, adenine nucleotide binding domain, antibiotic resistance; HET: MTX NAP; 1.50A {Escherichia coli K12} PDB: 1ddr_A* 1dds_A* 3k74_A 1ra9_A* 1dre_A* 1drh_A* 1dyi_A* 1dyh_A* 1jol_A* 1jom_A* 1ra1_A* 1dyj_A* 1ra3_A* 1ra8_A* 1ra2_A* 1rb2_A* 1rb3_A* 1rc4_A* 1rd7_A* 1re7_A* ...
Probab=34.79  E-value=18  Score=15.67  Aligned_cols=26  Identities=27%  Similarity=0.576  Sum_probs=20.5

Q ss_pred             CEEEEEEECCHHHHHHHHHHHHHCCCEEEECH
Q ss_conf             71899960780255788998773068888620
Q gi|254780653|r  190 PLVAIVGGSKVSTKITLLINLVKKVDKLVIGG  221 (400)
Q Consensus       190 P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG  221 (400)
                      +-+.|+||+.+      .+.+++.+|.+.++=
T Consensus        89 ~~v~viGG~~i------Y~~~l~~~d~i~lT~  114 (159)
T 3dau_A           89 PEIMVIGGGRV------YEQFLPKAQKLYLTH  114 (159)
T ss_dssp             SCEEECCCHHH------HHHHGGGCSEEEEEE
T ss_pred             CCEEEECCHHH------HHHHHHHCCEEEEEE
T ss_conf             73699828999------999998799999997


No 57 
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistance, structure, hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=33.23  E-value=18  Score=15.55  Aligned_cols=38  Identities=24%  Similarity=0.295  Sum_probs=23.8

Q ss_pred             CCCC---CCCE-ECC-----HHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             6713---1857-772-----589999889899999889809999137
Q gi|254780653|r   25 NVPF---IDGK-VAD-----VTRIERVVPTILELVEKKAKVVIFSHL   62 (400)
Q Consensus        25 NvPi---~~g~-I~d-----~~RI~~~~pTI~~l~~~~akvii~SH~   62 (400)
                      |+-+   ++|. |.+     ....+..+..++....+.-+.||.||.
T Consensus        31 n~~~i~~~dg~viliD~~~~~~~~~~l~~~~~~~~~~~v~~II~TH~   77 (246)
T 2fhx_A           31 NVLVAKMLDGTVVIVSSPFENLGTQTLMDWVAKTMKPKKVVAINTHF   77 (246)
T ss_dssp             EEEEEECTTSEEEEESCCSSHHHHHHHHHHHHHHHCCSEEEEECCSS
T ss_pred             EEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             49999938987999999999899999999999745996699997999


No 58 
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Probab=32.84  E-value=23  Score=14.94  Aligned_cols=63  Identities=14%  Similarity=0.147  Sum_probs=38.2

Q ss_pred             CCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             77101001599689998201671318577725899998898999998898099991377888984733224788887643
Q gi|254780653|r    5 RTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIAES   84 (400)
Q Consensus         5 ~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l~~   84 (400)
                      -+.||+ +|+||++||       .  |   -...|=++  +-+.|.++|++|++..   |.      .-.++..++.+++
T Consensus         2 ~~~d~~-~L~gKvalI-------T--G---as~GIG~a--ia~~la~~Ga~V~i~~---r~------~~~~~~~~~~l~~   57 (255)
T 1fmc_A            2 FNSDNL-RLDGKCAII-------T--G---AGAGIGKE--IAITFATAGASVVVSD---IN------ADAANHVVDEIQQ   57 (255)
T ss_dssp             CCGGGG-CCTTCEEEE-------T--T---TTSHHHHH--HHHHHHTTTCEEEEEE---SC------HHHHHHHHHHHHH
T ss_pred             CCCCCC-CCCCCEEEE-------E--C---CCCHHHHH--HHHHHHHCCCEEEEEE---CC------HHHHHHHHHHHHH
T ss_conf             987678-899998999-------3--8---97589999--9999998799899997---99------8999999999996


Q ss_pred             HCCCCCCC
Q ss_conf             10133545
Q gi|254780653|r   85 ILHKNILF   92 (400)
Q Consensus        85 ~l~~~V~f   92 (400)
                      . +.++.+
T Consensus        58 ~-g~~~~~   64 (255)
T 1fmc_A           58 L-GGQAFA   64 (255)
T ss_dssp             T-TCCEEE
T ss_pred             C-CCCEEE
T ss_conf             3-993899


No 59 
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=32.76  E-value=23  Score=14.93  Aligned_cols=212  Identities=14%  Similarity=0.186  Sum_probs=96.6

Q ss_pred             CCEEEEEEECCCCCC-CCEECCHHHHHHHHHHHHHHHHCCCEEEEEE---------CCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             968999820167131-8577725899998898999998898099991---------377888984733224788887643
Q gi|254780653|r   15 GLRCLLRVDWNVPFI-DGKVADVTRIERVVPTILELVEKKAKVVIFS---------HLGRPQSKSDKDCSLFKVVSIAES   84 (400)
Q Consensus        15 gk~VlvRvD~NvPi~-~g~I~d~~RI~~~~pTI~~l~~~~akvii~S---------H~GRPkg~~~~~~Sl~~v~~~l~~   84 (400)
                      -|||.|.+-=++=.. +|. .|..||......|..|.++|-.|||.|         |+|.++.  ....+.++.+....+
T Consensus         4 ~kriViKiGss~lt~~~~~-l~~~~i~~l~~~i~~L~~~g~evilVsSGAva~G~~~l~~~~~--p~~l~~~Qa~AavGQ   80 (367)
T 2j5v_A            4 SQTLVVKLGTSVLTGGSRR-LNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHLGYPEL--PATIASKQLLAAVGQ   80 (367)
T ss_dssp             CCEEEEEECHHHHTTTSSS-CCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTSCCC--CSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCEEECCCCC-CCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCC--CCCHHHHHHHHHHHH
T ss_conf             8789999067636894998-5899999999999999978998999875369856786299867--653467788998638


Q ss_pred             ---------HC---CC---CCC-----CCCCCCHHHHHHHHHHC-CCCCE-EECCHHHHCCCCC--CCHHHHHHHHCCC-
Q ss_conf             ---------10---13---354-----56663102556655313-64648-9824243034321--0002466531243-
Q gi|254780653|r   85 ---------IL---HK---NIL-----FVNDCIGSTLSQSIASL-SEGGI-ILAENVRFYSEEE--RNDPDFVRMLSRN-  139 (400)
Q Consensus        85 ---------~l---~~---~V~-----fi~d~~g~~~~~~i~~l-~~g~i-lLLEN~Rf~~~E~--~n~~~f~k~La~l-  139 (400)
                               .+   +.   +|.     |.+...-..+++.+..| +.|=| +.=||=---.+|.  ..+..++-.+|.+ 
T Consensus        81 ~~Lm~~y~~~f~~~~~~~aQvLlT~~d~~~r~r~~N~~~tl~~Ll~~gvIPIiNEND~Va~~Ei~fGDND~Laa~vA~~~  160 (367)
T 2j5v_A           81 SRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLRALLDNNVVPVINENDAVATAEIKVGDNDNLSALAAILA  160 (367)
T ss_dssp             HHHHHHHHHHHHTTTCCEEEEEECGGGGSSHHHHHHHHHHHHHHHHTTCEEEEEECTTSCCGGGCCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEECCEECCCCHHHHHHHHHHC
T ss_conf             99999999987453123213312577631377999999999999738876115588823422121267528999999863


Q ss_pred             -CCEEEECCHHHHCCCCCCEEECCCCCCC-CCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHC-CCE
Q ss_conf             -6424754404401137633302332100-0332556577765331016678718999607802557889987730-688
Q gi|254780653|r  140 -GDFYINDAFSVSHRAHASITGLSHLLPS-YIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKK-VDK  216 (400)
Q Consensus       140 -aDiyVnDAF~~aHR~haS~~gi~~~lps-~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k-~D~  216 (400)
                       ||..|.  +       ..+-|+=.--|. ...--.-.++...+.-+..-....---.|-.=+.+||...+..... ++.
T Consensus       161 ~AD~Lii--L-------TDvdGly~~~P~~~~~a~~i~~v~~~~~~~~~~~~~~~s~~GtGGM~tKl~AA~~a~~~Gi~~  231 (367)
T 2j5v_A          161 GADKLLL--L-------TDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDT  231 (367)
T ss_dssp             TCSEEEE--E-------ECC------------------------------------------CHHHHHHHHHHHHTTCEE
T ss_pred             CCCCEEE--E-------ECCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf             9151688--5-------055762267876687665336873375678877168888888685177999999998789829


Q ss_pred             EEECHHHHHHHHHH-HCCCCCCC
Q ss_conf             88620578999998-30143433
Q gi|254780653|r  217 LVIGGGMANSFLVA-QGMGVGRS  238 (400)
Q Consensus       217 iiigG~lantfL~A-~G~~IG~S  238 (400)
                      +|..|---+.+... .|..+|.-
T Consensus       232 iIa~G~~~~~l~~i~~g~~~GT~  254 (367)
T 2j5v_A          232 IIAAGSKPGVIGDVMEGISVGTL  254 (367)
T ss_dssp             EEEETTSTTHHHHHHHTCCCSEE
T ss_pred             EEECCCCCCCHHHHHCCCCCCCE
T ss_conf             99218997506898669974424


No 60 
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, structural genomics, center for structural genomics of infectious diseases; 2.05A {Francisella tularensis subsp}
Probab=32.05  E-value=23  Score=14.86  Aligned_cols=78  Identities=18%  Similarity=0.118  Sum_probs=49.7

Q ss_pred             HHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHHHHHH
Q ss_conf             53310166787189996078025578899877306888862057899999830143433--3310000135688998753
Q gi|254780653|r  180 LESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRS--LCQRDFSDNVHQIAWEAKR  257 (400)
Q Consensus       180 L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~S--l~e~~~~~~ak~i~~~a~~  257 (400)
                      ++.+-+...++-+|+-    .+|.+..++.+++.+|.|++=+           .+.|.+  .+.+...+.++++.+...+
T Consensus       127 i~~ik~~g~k~Glaln----p~T~i~~l~~~l~~iD~VlvM~-----------V~PGf~GQ~f~~~~l~kI~~l~~~~~~  191 (246)
T 3inp_A          127 LQLIKSFGIQAGLALN----PATGIDCLKYVESNIDRVLIMS-----------VNPGFGGQKFIPAMLDKAKEISKWISS  191 (246)
T ss_dssp             HHHHHTTTSEEEEEEC----TTCCSGGGTTTGGGCSEEEEEC-----------SCTTC--CCCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCEEEEEEC----CCCCHHHHHHHHHHHCEEEEEE-----------CCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             9999981981799963----7778999988764000356742-----------169887611457799999999988752


Q ss_pred             CCCCCCCEEEEECCC
Q ss_conf             024554303541134
Q gi|254780653|r  258 SACEIIVPRDVVVAR  272 (400)
Q Consensus       258 ~~~~I~lP~D~~v~~  272 (400)
                      ++.++.+-+|--+..
T Consensus       192 ~~~~~~I~VDGGIn~  206 (246)
T 3inp_A          192 TDRDILLEIDGGVNP  206 (246)
T ss_dssp             HTSCCEEEEESSCCT
T ss_pred             CCCCCEEEEECCCCH
T ss_conf             477715999798799


No 61 
>3myu_A High affinity transport system protein P37; Mg289, CYPL, extracytoplasmic, thiamine binding protein, lipoprotein; HET: VIB; 1.95A {Mycoplasma genitalium}
Probab=31.72  E-value=13  Score=16.54  Aligned_cols=43  Identities=14%  Similarity=0.148  Sum_probs=27.6

Q ss_pred             CHHHHHHHHHHHCCCCCCC----CCCCCHHHHHHHHHHCCCC--CEEECCHHHH
Q ss_conf             2478888764310133545----6663102556655313646--4898242430
Q gi|254780653|r   74 SLFKVVSIAESILHKNILF----VNDCIGSTLSQSIASLSEG--GIILAENVRF  121 (400)
Q Consensus        74 Sl~~v~~~l~~~l~~~V~f----i~d~~g~~~~~~i~~l~~g--~ilLLEN~Rf  121 (400)
                      .++|++++|++.|+++|.+    .+|.     ...++.|+.|  ++..+--.-+
T Consensus        27 ~~~pl~~~Ls~~l~~~V~V~~~~~~Dy-----~~~ieal~~g~~Dia~~gp~~y   75 (344)
T 3myu_A           27 FFTVFSKKLSGKLNKKINVNFNIVDDS-----FTKINNIQANKADFAFVNSQAI   75 (344)
T ss_dssp             HHHHHHHHHHHHHTSCCEEEEEECCCH-----HHHHHHHHTTSCSEEEECGGGC
T ss_pred             HHHHHHHHHHHHHCCCEEEEEEECCCH-----HHHHHHHHCCCCCEEEECCHHH
T ss_conf             999999999998689658999964879-----9999999779956899790999


No 62 
>3ek6_A Uridylate kinase; UMPK unique GTP binding site, allosteric regulation, ATP-binding, cytoplasm kinase, nucleotide-binding; 2.34A {Xanthomonas campestris PV} PDB: 3ek5_A
Probab=31.61  E-value=24  Score=14.81  Aligned_cols=53  Identities=19%  Similarity=0.191  Sum_probs=41.4

Q ss_pred             CCCCCEEEEEEECCCCC-CCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             15996899982016713-185777258999988989999988980999913778
Q gi|254780653|r   12 DIRGLRCLLRVDWNVPF-IDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGR   64 (400)
Q Consensus        12 d~~gk~VlvRvD~NvPi-~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GR   64 (400)
                      .++-|||.|.+-=++=. +++.-.|..+|++....|+.+.+.|..+||.|.=|.
T Consensus         6 ~~~~kRIViKiGgs~l~~~~~~~i~~~~i~~ia~~I~~l~~~G~~viiVssG~~   59 (243)
T 3ek6_A            6 ELSYRRILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGN   59 (243)
T ss_dssp             GCSCSEEEEEECGGGGTTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECSTT
T ss_pred             CCCCCEEEEEECCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
T ss_conf             577777999977000137999885999999999999999977987999953501


No 63 
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=31.42  E-value=24  Score=14.79  Aligned_cols=147  Identities=13%  Similarity=0.121  Sum_probs=72.1

Q ss_pred             EEEEEEECCHHHHHHHHHHHHH--CCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             1899960780255788998773--06888862057899999830143433331000013568899875302455430354
Q gi|254780653|r  191 LVAIVGGSKVSTKITLLINLVK--KVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDV  268 (400)
Q Consensus       191 ~v~IiGGaKisdKi~~i~~L~~--k~D~iiigG~lantfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D~  268 (400)
                      -+-++-|. ++|-+..+..++.  .+|-|+-.|+-|.. |+.. .++.-=.++-...|. -..+..+++++.+|-+    
T Consensus        40 ~i~v~~~~-~edav~~~~~~~~~~~~DviISRG~ta~~-Ir~~-~~iPVVeI~vs~~Di-l~aL~~a~~~~~kIav----  111 (225)
T 2pju_A           40 NITPIQLG-FEKAVTYIRKKLANERCDAIIAAGSNGAY-LKSR-LSVPVILIKPSGYDV-LQFLAKAGKLTSSIGV----  111 (225)
T ss_dssp             EEEEECCC-HHHHHHHHHHHTTTSCCSEEEEEHHHHHH-HHTT-CSSCEEEECCCHHHH-HHHHHHTTCTTSCEEE----
T ss_pred             EEEEEECC-HHHHHHHHHHHHHCCCCCEEEECCHHHHH-HHHH-CCCCEEEEECCHHHH-HHHHHHHHHHCCCEEE----
T ss_conf             69998274-78999999999864998699968568999-9985-899889970787689-9999999975898899----


Q ss_pred             ECCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf             11343232333310253212013345765200356777640577679997662532274365889999999986111488
Q gi|254780653|r  269 VVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERR  348 (400)
Q Consensus       269 ~v~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~~~~  348 (400)
                                    +...++          ....+.+++.+.--=.+        +....    ..++-..+.++. +.+
T Consensus       112 --------------Vgf~~~----------~~~~~~~~~ll~~~i~~--------~~~~~----~~e~~~~v~~l~-~~G  154 (225)
T 2pju_A          112 --------------VTYQET----------IPALVAFQKTFNLRLDQ--------RSYIT----EEDARGQINELK-ANG  154 (225)
T ss_dssp             --------------EEESSC----------CHHHHHHHHHHTCCEEE--------EEESS----HHHHHHHHHHHH-HTT
T ss_pred             --------------EECCCC----------CHHHHHHHHHHCCCEEE--------EEECC----HHHHHHHHHHHH-HCC
T ss_conf             --------------937640----------36999999996994499--------99668----899999999999-869


Q ss_pred             CEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHH
Q ss_conf             5899748046998998488768646875079989987
Q gi|254780653|r  349 IISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWL  385 (400)
Q Consensus       349 ~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~~L  385 (400)
                      +-.||||+-+....+++|+...+-  -+ |-+.-+.+
T Consensus       155 ~~vVVG~~~~~~~A~~~Gl~~vli--~S-geSI~~Ai  188 (225)
T 2pju_A          155 TEAVVGAGLITDLAEEAGMTGIFI--YS-AATVRQAF  188 (225)
T ss_dssp             CCEEEESHHHHHHHHHTTSEEEES--SC-HHHHHHHH
T ss_pred             CCEEECCHHHHHHHHHCCCCEEEE--CC-HHHHHHHH
T ss_conf             979998858999999849978997--58-89999999


No 64 
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2
Probab=31.23  E-value=24  Score=14.77  Aligned_cols=48  Identities=17%  Similarity=0.275  Sum_probs=36.4

Q ss_pred             HCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf             0159968999820167131857772589999889899999889809999137788
Q gi|254780653|r   11 RDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRP   65 (400)
Q Consensus        11 ~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRP   65 (400)
                      +.++||++.|.+.=++      ++|+..++..+.-|..|.+.|.++||. |=|+|
T Consensus        17 ~~~~~k~iVIKiGgs~------l~~~~~~~~l~~~Ia~L~~~G~~vVlV-hGg~~   64 (282)
T 2bty_A           17 KEFYGKTFVIKFGGSA------MKQENAKKAFIQDIILLKYTGIKPIIV-HGGGP   64 (282)
T ss_dssp             HHHTTCEEEEEECSHH------HHSHHHHHHHHHHHHHHHHTTCEEEEE-ECCSH
T ss_pred             HHHCCCEEEEEECCHH------HCCHHHHHHHHHHHHHHHHCCCEEEEE-ECCCH
T ss_conf             9868998999979056------178439999999999999889969999-68844


No 65 
>3jwk_A Dihydrofolate reductase; oxidoreductase; HET: NAP 5WB; 2.08A {Bacillus anthracis} PDB: 3jw5_A* 3jwf_A* 3jwc_A* 3jvx_A* 3jwm_A* 3jw3_A* 3e0b_A* 3dat_A* 2qk8_A* 3fl8_A* 3fl9_A* 2kgk_A*
Probab=29.51  E-value=25  Score=14.69  Aligned_cols=25  Identities=32%  Similarity=0.445  Sum_probs=19.2

Q ss_pred             EEEEEEECCHHHHHHHHHHHHHCCCEEEECH
Q ss_conf             1899960780255788998773068888620
Q gi|254780653|r  191 LVAIVGGSKVSTKITLLINLVKKVDKLVIGG  221 (400)
Q Consensus       191 ~v~IiGGaKisdKi~~i~~L~~k~D~iiigG  221 (400)
                      -+.|+||+++      .+.+++.+|.+.+.=
T Consensus        98 ~i~ViGG~~i------Y~~~l~~~d~i~lT~  122 (168)
T 3jwk_A           98 EIFIFGGAQI------FDLFLPYVDKLYITK  122 (168)
T ss_dssp             EEEEEECHHH------HHHHGGGCCEEEEEE
T ss_pred             CEEEECHHHH------HHHHHHHCCEEEEEE
T ss_conf             5399872999------998887699999998


No 66 
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose phosphate pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=29.17  E-value=26  Score=14.55  Aligned_cols=77  Identities=14%  Similarity=0.083  Sum_probs=46.1

Q ss_pred             HHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHHHHHH
Q ss_conf             53310166787189996078025578899877306888862057899999830143433--3310000135688998753
Q gi|254780653|r  180 LESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRS--LCQRDFSDNVHQIAWEAKR  257 (400)
Q Consensus       180 L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~S--l~e~~~~~~ak~i~~~a~~  257 (400)
                      ++++-+...++.+|+    +.+|.+..++.+++.+|.|++=+           .+-|.+  -+.+..++.++++.+..++
T Consensus       111 i~~ik~~g~k~Glal----~p~T~~~~i~~~l~~vD~VlvMt-----------V~PGf~GQ~f~~~~l~kI~~~~~~~~~  175 (230)
T 1rpx_A          111 INQIKSLGAKAGVVL----NPGTPLTAIEYVLDAVDLVLIMS-----------VNPGFGGQSFIESQVKKISDLRKICAE  175 (230)
T ss_dssp             HHHHHHTTSEEEEEE----CTTCCGGGGTTTTTTCSEEEEES-----------SCTTCSSCCCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCEEEEEE----CCCCCHHHHHHHHHHCCEEEEEE-----------ECCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             999998798699996----89999899999986579899988-----------768987544468899999999999986


Q ss_pred             CCCCCCCEEEEECC
Q ss_conf             02455430354113
Q gi|254780653|r  258 SACEIIVPRDVVVA  271 (400)
Q Consensus       258 ~~~~I~lP~D~~v~  271 (400)
                      ++..+.+-+|--+.
T Consensus       176 ~~~~~~I~VDGGIn  189 (230)
T 1rpx_A          176 RGLNPWIEVDGGVG  189 (230)
T ss_dssp             HTCCCEEEEESSCC
T ss_pred             CCCCEEEEEECCCC
T ss_conf             59935899988878


No 67 
>1df7_A DHFR, dihydrofolate reductase; structure-based inhibitor design, folateanalogs, rossmann fold, nicotinamide adenine dinucleotide; HET: NDP MTX; 1.70A {Mycobacterium tuberculosis} SCOP: c.71.1.1 PDB: 1dg5_A* 1dg7_A* 1dg8_A* 2cig_A*
Probab=28.51  E-value=20  Score=15.27  Aligned_cols=25  Identities=12%  Similarity=0.150  Sum_probs=18.9

Q ss_pred             EEEEEEECCHHHHHHHHHHHHHCCCEEEECH
Q ss_conf             1899960780255788998773068888620
Q gi|254780653|r  191 LVAIVGGSKVSTKITLLINLVKKVDKLVIGG  221 (400)
Q Consensus       191 ~v~IiGGaKisdKi~~i~~L~~k~D~iiigG  221 (400)
                      -+.|+||+.+=      +.+++.+|++.+.=
T Consensus        90 ~i~ViGG~~iY------~~~l~~~~~i~lT~  114 (159)
T 1df7_A           90 ETWVIGGGQVY------ALALPYATRCEVTE  114 (159)
T ss_dssp             SEEECCCHHHH------HHHGGGCSEEEEEE
T ss_pred             CEEEECHHHHH------HHHHHHCCEEEEEE
T ss_conf             58996448999------99987689999999


No 68 
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransferase; purine biosynthesis, glycosyltransferase, glutamine amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*
Probab=28.42  E-value=27  Score=14.47  Aligned_cols=14  Identities=14%  Similarity=0.249  Sum_probs=10.3

Q ss_pred             HHHHCCCCCEEECC
Q ss_conf             55313646489824
Q gi|254780653|r  104 SIASLSEGGIILAE  117 (400)
Q Consensus       104 ~i~~l~~g~ilLLE  117 (400)
                      .+.+++|||++.+.
T Consensus       220 ~irdv~PGEiv~i~  233 (504)
T 1ecf_A          220 FLRDVAPGEAIYIT  233 (504)
T ss_dssp             EEEECCTTEEEEEE
T ss_pred             EEEECCCCEEEEEE
T ss_conf             89962898799998


No 69 
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=28.12  E-value=18  Score=15.52  Aligned_cols=169  Identities=17%  Similarity=0.126  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHCCCEEEEEECCCCC-CCCCCCCCCHHHHHHHHHHHCCCCCCCCCC--CCHHHHHHHHHHCCCCCEEECC
Q ss_conf             9889899999889809999137788-898473322478888764310133545666--3102556655313646489824
Q gi|254780653|r   41 RVVPTILELVEKKAKVVIFSHLGRP-QSKSDKDCSLFKVVSIAESILHKNILFVND--CIGSTLSQSIASLSEGGIILAE  117 (400)
Q Consensus        41 ~~~pTI~~l~~~~akvii~SH~GRP-kg~~~~~~Sl~~v~~~l~~~l~~~V~fi~d--~~g~~~~~~i~~l~~g~ilLLE  117 (400)
                      +...-|+.|-+.|-.|.-..+.|-- ... .+.+.-.   .....+.+.+|.+.+.  ..-..+.+.....++|.+++=|
T Consensus        35 aVwk~i~~L~~~G~~I~s~~~~GY~l~~~-~~~l~~~---~i~~~~~~~~i~~~~~idSTN~~a~~~~~~~~~g~vviA~  110 (321)
T 1bia_A           35 AINKHIQTLRDWGVDVFTVPGKGYSLPEP-IQLLNAK---QILGQLDGGSVAVLPVIDSTNQYLLDRIGELKSGDACIAE  110 (321)
T ss_dssp             HHHHHHHHHHHTTCCCEEETTTEEECSSC-CCCCCHH---HHHHTCCSSCEEECSSBSCHHHHHHTTGGGCCTTCEEEES
T ss_pred             HHHHHHHHHHHCCCCEEEECCCCEEECCC-CCCCCHH---HHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEC
T ss_conf             99999999997797299978967598985-3537999---9962357974999803682899999875068998099989


Q ss_pred             HHHHCCCCCCCHHHHHHHHCCC--CCEEEECCHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf             2430343210002466531243--64247544044011376333023321000332556577765331016678718999
Q gi|254780653|r  118 NVRFYSEEERNDPDFVRMLSRN--GDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLESCFSESKKPLVAIV  195 (400)
Q Consensus       118 N~Rf~~~E~~n~~~f~k~La~l--aDiyVnDAF~~aHR~haS~~gi~~~lps~aG~l~ekEi~~L~~~l~~~~~P~v~Ii  195 (400)
                      +      -+...-...+.|.|.  +.+|    ||...|...+.... ..++-.+|..+.+=++.+...--.-|=|-=.++
T Consensus       111 ~------QT~GRGR~GR~W~Sp~g~~l~----~S~~l~~~~~~~~~-~~lsl~~~~av~~al~~~~~~~v~iKWPNDI~~  179 (321)
T 1bia_A          111 Y------QQAGRGRRGRKWFSPFGANLY----LSMFWRLEQGPAAA-IGLSLVIGIVMAEVLRKLGADKVRVKWPNDLYL  179 (321)
T ss_dssp             C------BTTC---------CCTTSEEE----EEEEEEECC-CCCT-HHHHHHHHHHHHHHHHHTTCTTCEEETTTEEEE
T ss_pred             C------CCCCCCCCCCEEECCCCCCEE----EEEEECCCCCHHHH-HHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHH
T ss_conf             7------688879998970689999889----99982675364466-888999999999999983665167636973300


Q ss_pred             EECCHHHHHHHHHHHHHCCCEEEECHHHH
Q ss_conf             60780255788998773068888620578
Q gi|254780653|r  196 GGSKVSTKITLLINLVKKVDKLVIGGGMA  224 (400)
Q Consensus       196 GGaKisdKi~~i~~L~~k~D~iiigG~la  224 (400)
                      +|.|+.-=+--...-.+....+++|+|+-
T Consensus       180 ~~kKi~GIL~E~~~~~~~~~~~viGiGiN  208 (321)
T 1bia_A          180 QDRKLAGILVELTGKTGDAAQIVIGAGIN  208 (321)
T ss_dssp             TTEEEEEEEEEEEC----CEEEEEEEEEE
T ss_pred             CCCCHHEEEEEEEECCCCEEEEEEEECCC
T ss_conf             11011234333220355203799997653


No 70 
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=27.69  E-value=28  Score=14.38  Aligned_cols=128  Identities=14%  Similarity=0.145  Sum_probs=64.0

Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCC-CCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCHHHH------HHHHCCCCCEE
Q ss_conf             332247888876431013354566-63102556655313646489824243034321000246------65312436424
Q gi|254780653|r   71 KDCSLFKVVSIAESILHKNILFVN-DCIGSTLSQSIASLSEGGIILAENVRFYSEEERNDPDF------VRMLSRNGDFY  143 (400)
Q Consensus        71 ~~~Sl~~v~~~l~~~l~~~V~fi~-d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n~~~f------~k~La~laDiy  143 (400)
                      +..++..++.++.+ -+++|.++. |++-..+.++.+.+..     ..++.|+..+...|+..      .+..+.-.|+-
T Consensus       111 KTTt~aKLA~~~~~-~g~kv~l~a~Dt~R~aA~eQL~~~a~-----~~~v~~~~~~~~~d~~~v~~~a~~~~~~~~~D~v  184 (297)
T 1j8m_F          111 KTTTAGKLAYFYKK-KGFKVGLVGADVYRPAALEQLQQLGQ-----QIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEII  184 (297)
T ss_dssp             TTHHHHHHHHHHHH-TTCCEEEEECCCSSSHHHHHHHHHHH-----HHTCCEECCTTCCCHHHHHHHHHHHHHHTTCSEE
T ss_pred             CHHHHHHHHHHHHH-CCCCCCEEECCCCCHHHHHHHHHHHH-----HCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf             20379999999996-79764112115654448999999863-----1395154237777767899999999985599889


Q ss_pred             EECCHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHC--CCEEEEC
Q ss_conf             7544044011376333023321000332556577765331016678718999607802557889987730--6888862
Q gi|254780653|r  144 INDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKK--VDKLVIG  220 (400)
Q Consensus       144 VnDAF~~aHR~haS~~gi~~~lps~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k--~D~iiig  220 (400)
                      +-|-=|..|++...              ....|+..+.++. .|...++++=+... .+-+..++.+-+.  .+.++++
T Consensus       185 lIDTaGR~~~~~~~--------------~~~~el~~i~~~~-~p~e~~LVlda~~g-~~~~~~~~~f~~~~~~~glIlT  247 (297)
T 1j8m_F          185 IVDTAGRHGYGEEA--------------ALLEEMKNIYEAI-KPDEVTLVIDASIG-QKAYDLASKFNQASKIGTIIIT  247 (297)
T ss_dssp             EEECCCSCCTTCHH--------------HHHHHHHHHHHHH-CCSEEEEEEEGGGG-GGHHHHHHHHHHTCTTEEEEEE
T ss_pred             EECCCCCCCCHHHH--------------HHHHHHHHHHHHC-CCCEEEEEEECCCC-CCHHHHHHHHHHHCCCCEEEEE
T ss_conf             95487767520556--------------5689999998636-97658998614568-4079999998763599879995


No 71 
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A*
Probab=27.63  E-value=26  Score=14.56  Aligned_cols=29  Identities=10%  Similarity=0.066  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHCCCEEEEEECCCCCCCCC
Q ss_conf             98898999998898099991377888984
Q gi|254780653|r   41 RVVPTILELVEKKAKVVIFSHLGRPQSKS   69 (400)
Q Consensus        41 ~~~pTI~~l~~~~akvii~SH~GRPkg~~   69 (400)
                      +-+-+=..|.++|.+|+|+=--.|+.|+.
T Consensus       118 AGLsAA~~L~~~G~~V~VlEa~~RvGGRi  146 (662)
T 2z3y_A          118 SGLAAARQLQSFGMDVTLLEARDRVGGRV  146 (662)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSSSSBTTC
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCCCCE
T ss_conf             99999999987799889997899864654


No 72 
>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3
Probab=27.46  E-value=28  Score=14.36  Aligned_cols=49  Identities=14%  Similarity=0.205  Sum_probs=38.4

Q ss_pred             CEEEEEEECCCCCCC-CEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             689998201671318-5777258999988989999988980999913778
Q gi|254780653|r   16 LRCLLRVDWNVPFID-GKVADVTRIERVVPTILELVEKKAKVVIFSHLGR   64 (400)
Q Consensus        16 k~VlvRvD~NvPi~~-g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GR   64 (400)
                      ||+.|.+-=++=..+ +.-.|..||.+....|+.+.++|-.+++.|+=|.
T Consensus         8 kRIVIKiGgs~l~~~~~~~ld~~~i~~ia~~I~~l~~~g~~vivV~gG~~   57 (252)
T 1z9d_A            8 QRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGN   57 (252)
T ss_dssp             SEEEEEECGGGGTCSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTT
T ss_pred             CEEEEEECCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             88999977024208999986999999999999999967998999979974


No 73 
>3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.25A {Bacteroides fragilis}
Probab=27.30  E-value=28  Score=14.34  Aligned_cols=50  Identities=22%  Similarity=0.315  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf             998898999998898099991377888984733224788887643101335456
Q gi|254780653|r   40 ERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIAESILHKNILFV   93 (400)
Q Consensus        40 ~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l~~~l~~~V~fi   93 (400)
                      ++-+..++.++++.-+|+|++|.. |  ..|.--|..-.+.+|++ +++++.++
T Consensus         8 ~~~~~~~~~~i~~~~~i~I~~H~n-p--D~DalgSa~al~~~l~~-~gk~~~i~   57 (343)
T 3dma_A            8 QAHIDHFTKWFERADKIVIVSHVS-P--DGDAIGSSLGLYHFLDS-QDKIVNVI   57 (343)
T ss_dssp             HHHHHHHHHHHHHCSEEEEEECSS-C--CHHHHHHHHHHHHHHHH-TSCEEEEE
T ss_pred             HHHHHHHHHHHHHCCEEEEEECCC-C--CHHHHHHHHHHHHHHHH-CCCCEEEE
T ss_conf             999999999996099699982899-9--81899999999999998-59948999


No 74 
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis}
Probab=27.28  E-value=28  Score=14.34  Aligned_cols=45  Identities=18%  Similarity=0.357  Sum_probs=29.0

Q ss_pred             CCEEC-CHHHH-HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             85777-25899-9988989999988980999913778889847332247888876
Q gi|254780653|r   30 DGKVA-DVTRI-ERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIA   82 (400)
Q Consensus        30 ~g~I~-d~~RI-~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l   82 (400)
                      ||++. ++.+| .+....|+.|.++|-++++.|  |||.      .++.++++.+
T Consensus        13 DGTL~~~~~~i~~~~~~al~~l~~~g~~v~i~T--GR~~------~~~~~~~~~l   59 (279)
T 3mpo_A           13 DGTLLNEKNELAQATIDAVQAAKAQGIKVVLCT--GRPL------TGVQPYLDAM   59 (279)
T ss_dssp             -----------CHHHHHHHHHHHHTTCEEEEEC--SSCH------HHHHHHHHHT
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEC--CCCH------HHHHHHHHHH
T ss_conf             766538959509999999999998899999988--9988------9999999997


No 75 
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis, nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}
Probab=26.46  E-value=29  Score=14.24  Aligned_cols=48  Identities=17%  Similarity=0.254  Sum_probs=36.3

Q ss_pred             HCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf             0159968999820167131857772589999889899999889809999137788
Q gi|254780653|r   11 RDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRP   65 (400)
Q Consensus        11 ~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRP   65 (400)
                      ..++||++.|.+.=++      ++|+..+...+..|..|.+.|.++||. |=|.|
T Consensus        32 ~~~~~k~iVIKiGgs~------l~~~~~~~~~~~dIa~L~~~G~~vVlV-hGg~~   79 (298)
T 2rd5_A           32 QKFRGKTIVVKYGGAA------MTSPELKSSVVSDLVLLACVGLRPILV-HGGGP   79 (298)
T ss_dssp             HHTTTCEEEEEECTHH------HHCHHHHHHHHHHHHHHHHTTCEEEEE-ECCHH
T ss_pred             HHHCCCEEEEEECCHH------HCCHHHHHHHHHHHHHHHHCCCEEEEE-ECCCH
T ss_conf             9868997999989247------279779999999999999879959999-18835


No 76 
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: NAP; 2.07A {Thermotoga maritima MSB8} SCOP: c.2.1.2
Probab=26.36  E-value=29  Score=14.23  Aligned_cols=64  Identities=16%  Similarity=0.064  Sum_probs=36.3

Q ss_pred             CHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             10100159968999820167131857772589999889899999889809999137788898473322478888764310
Q gi|254780653|r    7 MNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIAESIL   86 (400)
Q Consensus         7 i~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l~~~l   86 (400)
                      ++|+-||+||++||-       -     -..-|=++  +-+.|.++|++|++..+   .      .-.+...++.+.+..
T Consensus        13 M~~lf~L~gKvalIT-------G-----as~GIG~a--iA~~la~~Ga~V~i~~r---~------~~~l~~~~~~l~~~~   69 (267)
T 1vl8_A           13 MKEVFDLRGRVALVT-------G-----GSRGLGFG--IAQGLAEAGCSVVVASR---N------LEEASEAAQKLTEKY   69 (267)
T ss_dssp             ----CCCTTCEEEEE-------T-----TTSHHHHH--HHHHHHHTTCEEEEEES---C------HHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCEEEEE-------C-----CCCHHHHH--HHHHHHHCCCEEEEEEC---C------HHHHHHHHHHHHHHH
T ss_conf             051628899989994-------8-----98789999--99999987998999979---8------899999999999970


Q ss_pred             CCCCCCC
Q ss_conf             1335456
Q gi|254780653|r   87 HKNILFV   93 (400)
Q Consensus        87 ~~~V~fi   93 (400)
                      +.++.++
T Consensus        70 g~~~~~~   76 (267)
T 1vl8_A           70 GVETMAF   76 (267)
T ss_dssp             CCCEEEE
T ss_pred             CCCEEEE
T ss_conf             9957999


No 77 
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=25.86  E-value=30  Score=14.17  Aligned_cols=77  Identities=13%  Similarity=0.058  Sum_probs=46.7

Q ss_pred             HHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHHHHHH
Q ss_conf             53310166787189996078025578899877306888862057899999830143433--3310000135688998753
Q gi|254780653|r  180 LESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRS--LCQRDFSDNVHQIAWEAKR  257 (400)
Q Consensus       180 L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~S--l~e~~~~~~ak~i~~~a~~  257 (400)
                      +.++-+...++.+|+-    .+|.+..++.+++.+|.+++-+           .+.|.+  -+.+...+.++++.+..++
T Consensus       105 i~~ik~~g~k~Glal~----p~T~i~~i~~~l~~~d~vliM~-----------V~PGf~GQ~f~~~~~~kI~~~~~~~~~  169 (230)
T 1tqj_A          105 LCQIRELGKKAGAVLN----PSTPLDFLEYVLPVCDLILIMS-----------VNPGFGGQSFIPEVLPKIRALRQMCDE  169 (230)
T ss_dssp             HHHHHHTTCEEEEEEC----TTCCGGGGTTTGGGCSEEEEES-----------SCC----CCCCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCEEEEEC----CCCCHHHHHHHHCCCCEEEEEE-----------ECCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             9999986991899977----9998799999865368699998-----------547878765560268999999999723


Q ss_pred             CCCCCCCEEEEECC
Q ss_conf             02455430354113
Q gi|254780653|r  258 SACEIIVPRDVVVA  271 (400)
Q Consensus       258 ~~~~I~lP~D~~v~  271 (400)
                      ++.++.+-+|--+.
T Consensus       170 ~~~~~~I~VDGGIn  183 (230)
T 1tqj_A          170 RGLDPWIEVDGGLK  183 (230)
T ss_dssp             HTCCCEEEEESSCC
T ss_pred             CCCCEEEEEECCCC
T ss_conf             59970699978888


No 78 
>3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.25A {Bacillus subtilis subsp}
Probab=25.76  E-value=30  Score=14.16  Aligned_cols=21  Identities=10%  Similarity=0.303  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             899998898999998898099991
Q gi|254780653|r   37 TRIERVVPTILELVEKKAKVVIFS   60 (400)
Q Consensus        37 ~RI~~~~pTI~~l~~~~akvii~S   60 (400)
                      .|+...+   +.+-+++..++++.
T Consensus        41 arl~t~i---~~~r~~~~~~l~ld   61 (341)
T 3gve_A           41 ARTAQLI---QKHREQNPNTLLVD   61 (341)
T ss_dssp             HHHHHHH---HHHHHHCSSEEEEE
T ss_pred             HHHHHHH---HHHHHHCCCEEEEE
T ss_conf             9999999---99996599879997


No 79 
>2obb_A Hypothetical protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.108.1.25
Probab=25.55  E-value=30  Score=14.14  Aligned_cols=39  Identities=21%  Similarity=0.238  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             99988989999988980999913778889847332247888876431
Q gi|254780653|r   39 IERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIAESI   85 (400)
Q Consensus        39 I~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l~~~   85 (400)
                      +..++.+|+.|.++|.+|||.|  +||..      .+....++|.+.
T Consensus        26 i~~~Ie~l~~L~~~G~~III~T--aR~~~------~~~~t~~wL~k~   64 (142)
T 2obb_A           26 IPFAVETLKLLQQEKHRLILWS--VREGE------LLDEAIEWCRAR   64 (142)
T ss_dssp             CTTHHHHHHHHHHTTCEEEECC--SCCHH------HHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHCCCEEEEEE--CCCCC------CHHHHHHHHHHH
T ss_conf             7899999999997799799993--68974------179999999992


No 80 
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}
Probab=25.33  E-value=31  Score=14.11  Aligned_cols=52  Identities=17%  Similarity=0.176  Sum_probs=39.4

Q ss_pred             CCCC-CEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             1599-689998201671318577725899998898999998898099991377
Q gi|254780653|r   12 DIRG-LRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLG   63 (400)
Q Consensus        12 d~~g-k~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~G   63 (400)
                      ++++ |||+|.+-=++=..++.-.|..+|.+....|..+.++|-+|||.+.=|
T Consensus        46 ~~~~~kRIVIKiGgs~lt~~~~~ld~~~i~~ia~~I~~l~~~G~eVilVssGg   98 (281)
T 3nwy_A           46 QLSGYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGG   98 (281)
T ss_dssp             -CCCCSEEEEEECGGGGGTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred             CCCCCCEEEEEECHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECH
T ss_conf             13689879999887871399999199999999999999997799599995164


No 81 
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=25.32  E-value=31  Score=14.11  Aligned_cols=154  Identities=18%  Similarity=0.212  Sum_probs=101.9

Q ss_pred             CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC-CCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCHHH-
Q ss_conf             80999913778889847332247888876431013354566-6310255665531364648982424303432100024-
Q gi|254780653|r   54 AKVVIFSHLGRPQSKSDKDCSLFKVVSIAESILHKNILFVN-DCIGSTLSQSIASLSEGGIILAENVRFYSEEERNDPD-  131 (400)
Q Consensus        54 akvii~SH~GRPkg~~~~~~Sl~~v~~~l~~~l~~~V~fi~-d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n~~~-  131 (400)
                      ..||++-  | |.|- -+..|+..+|.++.+. |++|.++. |++-+.+.++++.+..     .-++-||......+|. 
T Consensus        98 p~VIl~v--G-~~G~-GKTTT~aKLA~~~~~~-g~kv~lva~Dt~R~aA~eQL~~~a~-----~~~vp~~~~~~~~dp~~  167 (425)
T 2ffh_A           98 RNLWFLV--G-LQGS-GKTTTAAKLALYYKGK-GRRPLLVAADTQRPAAREQLRLLGE-----KVGVPVLEVMDGESPES  167 (425)
T ss_dssp             SEEEEEE--C-CTTS-SHHHHHHHHHHHHHTT-TCCEEEEECCSSCHHHHHHHHHHHH-----HHTCCEEECCTTCCHHH
T ss_pred             CEEEEEE--C-CCCC-CCHHHHHHHHHHHHHC-CCEEEEEECCCCCCCHHHHHHHHHH-----HCCCCEECCCCCCCHHH
T ss_conf             7389996--6-7887-6100899999999863-9836898435567567999999998-----70882122467777677


Q ss_pred             H---HHHHC--CCCCEEEECCHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHH
Q ss_conf             6---65312--436424754404401137633302332100033255657776533101667871899960780255788
Q gi|254780653|r  132 F---VRMLS--RNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITL  206 (400)
Q Consensus       132 f---~k~La--~laDiyVnDAF~~aHR~haS~~gi~~~lps~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~  206 (400)
                      .   +...|  .-.|+-+-|-=|..|++.                .+-.|+..+.++. +|..-++ |+-+.-=.+-+..
T Consensus       168 i~~~~~~~ak~~~~DviiIDTAGR~~~d~----------------~lm~EL~~i~~~~-~p~e~~L-Vlda~~gq~~~~~  229 (425)
T 2ffh_A          168 IRRRVEEKARLEARDLILVDTAGRLQIDE----------------PLMGELARLKEVL-GPDEVLL-VLDAMTGQEALSV  229 (425)
T ss_dssp             HHHHHHHHHHHTTCSEEEEECCCCSSCCH----------------HHHHHHHHHHHHH-CCSEEEE-EEEGGGTTHHHHH
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCHHHHH----------------HHHHHHHHHHHHH-CCCEEEE-EEECCCCHHHHHH
T ss_conf             89999999986699889996665125369----------------9999999999861-9856999-7305558678999


Q ss_pred             HHHHHHC--CCEEEE-------CHHHHHHHHHHHCCCC
Q ss_conf             9987730--688886-------2057899999830143
Q gi|254780653|r  207 LINLVKK--VDKLVI-------GGGMANSFLVAQGMGV  235 (400)
Q Consensus       207 i~~L~~k--~D~iii-------gG~lantfL~A~G~~I  235 (400)
                      .+.+-+.  .+.+++       -||-+.......|..|
T Consensus       230 a~~F~~~~~i~gvIlTKlD~takgG~alsi~~~t~~PI  267 (425)
T 2ffh_A          230 ARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPI  267 (425)
T ss_dssp             HHHHHHHTCCCEEEEESGGGCSSCHHHHHHHHHHCCCE
T ss_pred             HHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCE
T ss_conf             99988646998547632467775139999999869887


No 82 
>3ia4_A Dihydrofolate reductase; NADPH, methotrexate, oxidoreductase; HET: NDP MTX; 1.70A {Moritella profunda} PDB: 3ia5_A 2zza_A*
Probab=25.10  E-value=22  Score=15.03  Aligned_cols=25  Identities=20%  Similarity=0.414  Sum_probs=19.6

Q ss_pred             EEEEEEECCHHHHHHHHHHHHHCCCEEEECH
Q ss_conf             1899960780255788998773068888620
Q gi|254780653|r  191 LVAIVGGSKVSTKITLLINLVKKVDKLVIGG  221 (400)
Q Consensus       191 ~v~IiGGaKisdKi~~i~~L~~k~D~iiigG  221 (400)
                      -+.|+||+++      .+.+++.+|++.+.=
T Consensus        92 ~i~VIGG~~i------Y~~~l~~~d~i~iT~  116 (162)
T 3ia4_A           92 ELMIIGGATI------YNQCLAAADRLYLTH  116 (162)
T ss_dssp             EEEECCCHHH------HHHHGGGCSEEEEEE
T ss_pred             CEEECCHHHH------HHHHHHHCCEEEEEE
T ss_conf             1799154999------999997699999988


No 83 
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=25.10  E-value=31  Score=14.08  Aligned_cols=155  Identities=14%  Similarity=0.258  Sum_probs=99.4

Q ss_pred             CCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC-CCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCHHH
Q ss_conf             980999913778889847332247888876431013354566-6310255665531364648982424303432100024
Q gi|254780653|r   53 KAKVVIFSHLGRPQSKSDKDCSLFKVVSIAESILHKNILFVN-DCIGSTLSQSIASLSEGGIILAENVRFYSEEERNDPD  131 (400)
Q Consensus        53 ~akvii~SH~GRPkg~~~~~~Sl~~v~~~l~~~l~~~V~fi~-d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n~~~  131 (400)
                      +..||++  .| |.|- -+..|+..+|.++.+. +.+|.++. |++-+.+.++.+.+..     --++.||..+...||.
T Consensus        99 ~p~vi~~--vG-~~G~-GKTTT~aKLA~~~~~~-g~kv~lva~Dt~R~aA~eQL~~~a~-----~~~v~v~~~~~~~dp~  168 (443)
T 3dm5_A           99 KPTILLM--VG-IQGS-GKTTTVAKLARYFQKR-GYKVGVVCSDTWRPGAYHQLRQLLD-----RYHIEVFGNPQEKDAI  168 (443)
T ss_dssp             SSEEEEE--EC-CTTS-SHHHHHHHHHHHHHTT-TCCEEEEECCCSSTHHHHHHHHHHG-----GGTCEEECCTTCCCHH
T ss_pred             CCEEEEE--EC-CCCC-CCCCHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHH-----CCCCCEECCCCCCCHH
T ss_conf             9828999--66-7889-7232799999999976-9942465314557669999999851-----2456500676433667


Q ss_pred             -HHH-----HHCCCCCEEEECCHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHH
Q ss_conf             -665-----31243642475440440113763330233210003325565777653310166787189996078025578
Q gi|254780653|r  132 -FVR-----MLSRNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKIT  205 (400)
Q Consensus       132 -f~k-----~La~laDiyVnDAF~~aHR~haS~~gi~~~lps~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~  205 (400)
                       .++     .-..-+|+-+-|-=|..|++.                .+-.|+..+.++. +|...++ |+-..-=.+-+.
T Consensus       169 ~i~~~a~~~a~~~~~D~viIDTAGR~~~d~----------------~lm~EL~~i~~~~-~p~e~lL-Vlda~~gq~a~~  230 (443)
T 3dm5_A          169 KLAKEGVDYFKSKGVDIIIVDTAGRHKEDK----------------ALIEEMKQISNVI-HPHEVIL-VIDGTIGQQAYN  230 (443)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEECCCCSSCCH----------------HHHHHHHHHHHHH-CCSEEEE-EEEGGGGGGHHH
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCHHHH----------------HHHHHHHHHHCCC-CCCEEEE-EECCCCCHHHHH
T ss_conf             899999999986699989987887536589----------------9999999752146-9824787-411434667899


Q ss_pred             HHHHHHHC--CCEEEEC-------HHHHHHHHHHHCCCC
Q ss_conf             89987730--6888862-------057899999830143
Q gi|254780653|r  206 LLINLVKK--VDKLVIG-------GGMANSFLVAQGMGV  235 (400)
Q Consensus       206 ~i~~L~~k--~D~iiig-------G~lantfL~A~G~~I  235 (400)
                      ..+.+.+.  ++.++++       ||-+.......|..|
T Consensus       231 ~a~~f~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI  269 (443)
T 3dm5_A          231 QALAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPI  269 (443)
T ss_dssp             HHHHHHHSCTTEEEEEECCSSCSSHHHHHHHHHTTCCCE
T ss_pred             HHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCE
T ss_conf             999855315888357733567876348977999979497


No 84 
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni}
Probab=24.91  E-value=22  Score=14.97  Aligned_cols=100  Identities=15%  Similarity=0.225  Sum_probs=53.6

Q ss_pred             HHHHCCCCCCCHHHHHHHHCCCCCEEEECCHHHHCCCCCCEEECCCC-CCC-CCCHHHHH--HHHHHHHHCCCCCCCEEE
Q ss_conf             24303432100024665312436424754404401137633302332-100-03325565--777653310166787189
Q gi|254780653|r  118 NVRFYSEEERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHL-LPS-YIGRAMQK--ELSMLESCFSESKKPLVA  193 (400)
Q Consensus       118 N~Rf~~~E~~n~~~f~k~La~laDiyVnDAF~~aHR~haS~~gi~~~-lps-~aG~l~ek--Ei~~L~~~l~~~~~P~v~  193 (400)
                      |+|.++|=..|-.-|.-.+.+---+-..+--.--|-+|.+.+..... ..+ +.+.--+.  .+..+.+... ..||.+.
T Consensus        90 nvqp~SGs~An~av~~all~pGd~im~l~l~~GGHlshg~~~~~~~~~~~~~~y~~~~~~~IDyd~~~~~a~-~~kPklI  168 (417)
T 3n0l_A           90 NVQPNSGSQANQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAK-KEKPKLI  168 (417)
T ss_dssp             ECCCSSHHHHHHHHHHHHSCTTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHH-HHCCSEE
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHH-HCCCCEE
T ss_conf             643468699999999996289987997356767776766464665503434656889888567999999998-6199857


Q ss_pred             EEEECCHHHHHHH--HHHHHHCCCEEE
Q ss_conf             9960780255788--998773068888
Q gi|254780653|r  194 IVGGSKVSTKITL--LINLVKKVDKLV  218 (400)
Q Consensus       194 IiGGaKisdKi~~--i~~L~~k~D~ii  218 (400)
                      |+|++-.+-.++.  +..+.+.+.-++
T Consensus       169 i~G~S~y~~~~d~~~~~eia~~vga~l  195 (417)
T 3n0l_A          169 VCGASAYARVIDFAKFREIADEIGAYL  195 (417)
T ss_dssp             EECCSSCCSCCCHHHHHHHHHHHTCEE
T ss_pred             EECCCCCCCCCCHHHHHHHHHHHCHHE
T ss_conf             752544566668689999986424114


No 85 
>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A {Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A* 2hf2_A
Probab=24.55  E-value=32  Score=14.02  Aligned_cols=23  Identities=30%  Similarity=0.417  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf             9889899999889809999137788
Q gi|254780653|r   41 RVVPTILELVEKKAKVVIFSHLGRP   65 (400)
Q Consensus        41 ~~~pTI~~l~~~~akvii~SH~GRP   65 (400)
                      .....|+.|.++|.++++.|  |||
T Consensus        25 ~~~~~l~~l~~~g~~v~i~T--GR~   47 (271)
T 1rlm_A           25 RFMAQYQELKKRGIKFVVAS--GNQ   47 (271)
T ss_dssp             HHHHHHHHHHHHTCEEEEEC--SSC
T ss_pred             HHHHHHHHHHHCCCEEEEEC--CCC
T ss_conf             99999999997799899986--998


No 86 
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} PDB: 3gdf_A
Probab=24.23  E-value=32  Score=13.98  Aligned_cols=72  Identities=14%  Similarity=0.061  Sum_probs=39.3

Q ss_pred             CCCC-HHHHCCCCCEEEEEEECCCCCC-CCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHH
Q ss_conf             8771-0100159968999820167131-8577725899998898999998898099991377888984733224788887
Q gi|254780653|r    4 LRTM-NDLRDIRGLRCLLRVDWNVPFI-DGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSI   81 (400)
Q Consensus         4 ~~ti-~d~~d~~gk~VlvRvD~NvPi~-~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~   81 (400)
                      ..++ +.+ +|+||+|||       .- .|.    +-|=  .-+-+.|.++|++|++..+- |.       -.++..++.
T Consensus         9 ~~~~~~~~-~L~gKvalV-------TGAsG~----~GIG--~aia~~la~~Ga~V~i~~~~-~~-------~~~~~~~~~   66 (267)
T 3gdg_A            9 HESLLDQL-SLKGKVVVV-------TGASGP----KGMG--IEAARGCAEMGAAVAITYAS-RA-------QGAEENVKE   66 (267)
T ss_dssp             CSSHHHHH-CCTTCEEEE-------TTCCSS----SSHH--HHHHHHHHHTSCEEEECBSS-SS-------SHHHHHHHH
T ss_pred             CCCCCCCC-CCCCCEEEE-------ECCCCC----CHHH--HHHHHHHHHCCCEEEEEECC-CH-------HHHHHHHHH
T ss_conf             52530225-989998999-------598999----7089--99999999869989998489-45-------779999999


Q ss_pred             HHHHCCCCCCCCC-CCC
Q ss_conf             6431013354566-631
Q gi|254780653|r   82 AESILHKNILFVN-DCI   97 (400)
Q Consensus        82 l~~~l~~~V~fi~-d~~   97 (400)
                      +.+..+.++.++. |..
T Consensus        67 l~~~~g~~~~~~~~Dv~   83 (267)
T 3gdg_A           67 LEKTYGIKAKAYKCQVD   83 (267)
T ss_dssp             HHHHHCCCEECCBCCTT
T ss_pred             HHHHCCCCEEEEECCCC
T ss_conf             99850995799981389


No 87 
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=24.22  E-value=30  Score=14.19  Aligned_cols=56  Identities=23%  Similarity=0.354  Sum_probs=35.4

Q ss_pred             CCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             871899960780255788998773068888620578999998301434333310000135688998753024554
Q gi|254780653|r  189 KPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEII  263 (400)
Q Consensus       189 ~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~  263 (400)
                      ||-++..|-.--.+.+.-....++++|-+++-|               .|+.    +.-+..+...+++++.+++
T Consensus       159 rP~vv~fge~~~~~~~~~~~~~~~~~DlllviG---------------TSl~----v~p~~~l~~~a~~~g~~vi  214 (253)
T 1ma3_A          159 KPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVG---------------SSLV----VYPAAELPYIAKKAGAKMI  214 (253)
T ss_dssp             EEEECCBTSBCCHHHHHHHHHHHHHCSEEEEES---------------CCSC----EETGGGHHHHHHHHTCEEE
T ss_pred             CCCEEECCCCCCHHHHHHHHHHHHCCCEEEEEC---------------CCCE----EEECCHHHHHHHHCCCCEE
T ss_conf             982788888586578999999986399899976---------------7874----6452068999997499299


No 88 
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, cytoplasm, one-carbon metabolism, pyridoxal phosphate; HET: MSE; 1.80A {Salmonella typhimurium} PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=24.04  E-value=19  Score=15.51  Aligned_cols=101  Identities=16%  Similarity=0.142  Sum_probs=58.6

Q ss_pred             HHHHCCCCCCCHHHHHHHHCCCCCEEEECCHHHHCCCCCCEEECCCCCCCCCCHHHH----HHHHHHHHHCCCCCCCEEE
Q ss_conf             243034321000246653124364247544044011376333023321000332556----5777653310166787189
Q gi|254780653|r  118 NVRFYSEEERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQ----KELSMLESCFSESKKPLVA  193 (400)
Q Consensus       118 N~Rf~~~E~~n~~~f~k~La~laDiyVnDAF~~aHR~haS~~gi~~~lps~aG~l~e----kEi~~L~~~l~~~~~P~v~  193 (400)
                      |+|-++|=..|-.-|.-.+.+---+-..+--.--|=+|.+.+.+.-..-....+-+.    =.++.+.+... ..||.+.
T Consensus        95 nVqp~SGs~An~av~~all~pGD~il~l~l~~GGHlshg~~~~~~g~~~~~~~y~vd~~~~IDyd~~~~~a~-~~kPklI  173 (420)
T 3gbx_A           95 NVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAK-EHKPKMI  173 (420)
T ss_dssp             ECCCSSHHHHHHHHHHHHCCTTCEEEEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHH-HHCCSEE
T ss_pred             CEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHH-HCCCCEE
T ss_conf             112388689999999982799998997455567764556654456535788742538888718999999998-6099879


Q ss_pred             EEEECCHHHHHHH--HHHHHHCCCEEEE
Q ss_conf             9960780255788--9987730688886
Q gi|254780653|r  194 IVGGSKVSTKITL--LINLVKKVDKLVI  219 (400)
Q Consensus       194 IiGGaKisdKi~~--i~~L~~k~D~iii  219 (400)
                      |+|++-.+-.++.  ++...+.+.-+++
T Consensus       174 i~G~S~y~r~~d~~~~reiad~vga~l~  201 (420)
T 3gbx_A          174 IGGFSAYSGVVDWAKMREIADSIGAYLF  201 (420)
T ss_dssp             EECCTTCCSCCCHHHHHHHHHHTTCEEE
T ss_pred             EECCCCCCCCCCHHHHHHHHHHCCCEEE
T ss_conf             9355336676599999999864181799


No 89 
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 function project, S2F, structural genomics, unknown functio; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A
Probab=23.41  E-value=33  Score=13.88  Aligned_cols=41  Identities=22%  Similarity=0.260  Sum_probs=26.8

Q ss_pred             CEEEEEEECCHHHHHHHHHHHHH-CCCEEEECHHHHHHHHHHHCCC
Q ss_conf             71899960780255788998773-0688886205789999983014
Q gi|254780653|r  190 PLVAIVGGSKVSTKITLLINLVK-KVDKLVIGGGMANSFLVAQGMG  234 (400)
Q Consensus       190 P~v~IiGGaKisdKi~~i~~L~~-k~D~iiigG~lantfL~A~G~~  234 (400)
                      -.++|.||+=-+    .+....+ .+|-++.|=.=-.+++.|+-.+
T Consensus       166 ~rVai~~GsG~~----~i~~a~~~g~D~~ITGe~k~h~~~~A~~~g  207 (247)
T 1nmo_A          166 QRVAWCTGGGQS----FIDSAARFGVDAFITGEVSEQTIHSAREQG  207 (247)
T ss_dssp             EEEEECSSSCGG----GHHHHHHHCCSEEEESCCCHHHHHHHHHTT
T ss_pred             EEEEEECCCCHH----HHHHHHHCCCCEEEECCCCHHHHHHHHHCC
T ss_conf             699998688878----999998559978997667779999999769


No 90 
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold; HET: 1PE MES; 1.80A {Aquifex aeolicus VF5} PDB: 2p68_A*
Probab=23.31  E-value=33  Score=13.87  Aligned_cols=63  Identities=16%  Similarity=0.138  Sum_probs=37.4

Q ss_pred             CCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             15996899982016713185777258999988989999988980999913778889847332247888876431013354
Q gi|254780653|r   12 DIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIAESILHKNIL   91 (400)
Q Consensus        12 d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l~~~l~~~V~   91 (400)
                      +|+||++||         .|   -..-|=++  +-+.|.++|++|++..   |.      .-.+...++.+.+..+.++.
T Consensus         4 ~L~gK~alV---------TG---as~GIG~a--ia~~la~~Ga~V~~~~---r~------~~~l~~~~~~l~~~~g~~~~   60 (248)
T 2pnf_A            4 KLQGKVSLV---------TG---STRGIGRA--IAEKLASAGSTVIITG---TS------GERAKAVAEEIANKYGVKAH   60 (248)
T ss_dssp             CCTTCEEEE---------TT---CSSHHHHH--HHHHHHHTTCEEEEEE---SS------HHHHHHHHHHHHHHHCCCEE
T ss_pred             CCCCCEEEE---------EC---CCCHHHHH--HHHHHHHCCCEEEEEE---CC------HHHHHHHHHHHHHHHCCCEE
T ss_conf             859998999---------37---78789999--9999998799899997---98------89999999999886299389


Q ss_pred             CCC-CCC
Q ss_conf             566-631
Q gi|254780653|r   92 FVN-DCI   97 (400)
Q Consensus        92 fi~-d~~   97 (400)
                      ++. |..
T Consensus        61 ~~~~Dv~   67 (248)
T 2pnf_A           61 GVEMNLL   67 (248)
T ss_dssp             EEECCTT
T ss_pred             EEECCCC
T ss_conf             9986789


No 91 
>1juv_A DHFR, dihydrofolate reductase; complexed with NADPH, oxidoreductase; HET: NDP; 1.70A {Enterobacteria phage T4} SCOP: c.71.1.1
Probab=22.95  E-value=34  Score=13.82  Aligned_cols=25  Identities=24%  Similarity=0.510  Sum_probs=19.3

Q ss_pred             EEEEEEECCHHHHHHHHHHHHHCCCEEEECH
Q ss_conf             1899960780255788998773068888620
Q gi|254780653|r  191 LVAIVGGSKVSTKITLLINLVKKVDKLVIGG  221 (400)
Q Consensus       191 ~v~IiGGaKisdKi~~i~~L~~k~D~iiigG  221 (400)
                      -+.|+||+.+      .+.+++.+|.|++.=
T Consensus       123 ~v~IiGG~~I------Y~~~l~~~d~i~lT~  147 (193)
T 1juv_A          123 KVSVIGGPAL------LYAALPYADEVVVSR  147 (193)
T ss_dssp             CEEEEECHHH------HHHHGGGCSEEEEEE
T ss_pred             EEEEECCHHH------HHHHHHHCCEEEEEE
T ss_conf             5999769999------999986689999999


No 92 
>3cse_A Dihydrofolate reductase; protein-ligand complex, oxidoreductase; HET: NAP N22; 1.60A {Candida glabrata} PDB: 3eej_A* 3eek_A* 3eel_A* 3eem_A*
Probab=22.51  E-value=27  Score=14.49  Aligned_cols=26  Identities=19%  Similarity=0.305  Sum_probs=20.1

Q ss_pred             EEEEEEECCHHHHHHHHHHHHHCCCEEEECHH
Q ss_conf             18999607802557889987730688886205
Q gi|254780653|r  191 LVAIVGGSKVSTKITLLINLVKKVDKLVIGGG  222 (400)
Q Consensus       191 ~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~  222 (400)
                      -+.||||+.+      .+.+++.+|+++++=.
T Consensus       117 ~IfVIGG~~I------Y~~~l~~~d~i~lT~I  142 (227)
T 3cse_A          117 RIYIIGGGEI------YRQSMDLADHWLITKI  142 (227)
T ss_dssp             EEEECCCHHH------HHHHTTTCSEEEEEEE
T ss_pred             EEEEECCHHH------HHHHHHHCCEEEEEEE
T ss_conf             2999899999------9999866898999999


No 93 
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.6A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=22.20  E-value=35  Score=13.73  Aligned_cols=52  Identities=19%  Similarity=0.369  Sum_probs=29.4

Q ss_pred             CCCCCEEEEEEECCH--HH-HHHHH----HHHHHCCCEEEECHH-------HHHHHHHHHCCCCCC
Q ss_conf             667871899960780--25-57889----987730688886205-------789999983014343
Q gi|254780653|r  186 ESKKPLVAIVGGSKV--ST-KITLL----INLVKKVDKLVIGGG-------MANSFLVAQGMGVGR  237 (400)
Q Consensus       186 ~~~~P~v~IiGGaKi--sd-Ki~~i----~~L~~k~D~iiigG~-------lantfL~A~G~~IG~  237 (400)
                      ..+||.++|+|+++.  ++ -...-    +.|.++--.++.||+       .+...+.+.|..+|-
T Consensus        10 ~~~rp~IaV~Gs~~~~~~~~~~~~A~~lg~~La~~g~~vVsGG~~~Gim~a~~~ga~~~gg~~~gv   75 (176)
T 2iz6_A           10 SGRKPIIGVMGPGKADTAENQLVMANELGKQIATHGWILLTGGRSLGVMHEAMKGAKEAGGTTIGV   75 (176)
T ss_dssp             -CCCCEEEEECCCGGGCCHHHHHHHHHHHHHHHHTTCEEEEECSSSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf             479988999837789989589999999999999889949956976508899999998748963211


No 94 
>3g3d_A UMP synthase, uridine 5'-monophosphate synthase; C-terminal domain, orotidine 5'-monophosphate decarboxylase, human, 5-fluoro-6-azido-UMP; HET: 5FU; 1.70A {Homo sapiens} PDB: 3bvj_A* 2p1f_A 2eaw_A 3bgg_A* 3bgj_A*
Probab=22.01  E-value=32  Score=14.02  Aligned_cols=60  Identities=18%  Similarity=0.263  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHCCCC---CCCCCCC-CHHHHHHHHHHCCCCCEEECC-HHHHCCCCCCCHHHHHHHHCC
Q ss_conf             478888764310133---5456663-102556655313646489824-243034321000246653124
Q gi|254780653|r   75 LFKVVSIAESILHKN---ILFVNDC-IGSTLSQSIASLSEGGIILAE-NVRFYSEEERNDPDFVRMLSR  138 (400)
Q Consensus        75 l~~v~~~l~~~l~~~---V~fi~d~-~g~~~~~~i~~l~~g~ilLLE-N~Rf~~~E~~n~~~f~k~La~  138 (400)
                      ..|+++.|-+++.++   +.+.-|. ..+++.+.++.+.+- |..++ ++.++..   ..+++.++|..
T Consensus        68 ~~~~~~kL~~lm~~Kks~L~vAlD~~s~~e~l~la~~l~p~-I~~lKig~~li~~---~G~~~I~~L~~  132 (312)
T 3g3d_A           68 IHPVASKLLRLMQKKETNLCLSADVSLARELLQLADALGPS-ICMLKTHVDILND---FTLDVMKELIT  132 (312)
T ss_dssp             CCHHHHHHHHHHHHHTCCEEEECCCSCHHHHHHHHHHHGGG-CSEEEECGGGCTT---CCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCC-CEEEEECHHHHHH---CCHHHHHHHHH
T ss_conf             89699999999973368889996369999999999984885-2699987899743---79999999999


No 95 
>1apy_A Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG BMA; 2.00A {Homo sapiens} SCOP: d.153.1.5 PDB: 1apz_A*
Probab=21.47  E-value=36  Score=13.63  Aligned_cols=69  Identities=10%  Similarity=0.107  Sum_probs=47.3

Q ss_pred             CCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             87189996078025578899877306888862057899999830143433331000013568899875302455
Q gi|254780653|r  189 KPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEI  262 (400)
Q Consensus       189 ~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I  262 (400)
                      +-+-+|.+=..+.--|.+.+.++++-+++++.|-=|..|.+.+|+..-     +......++..+..++++++.
T Consensus        74 ~~~GaV~~v~~vknPI~lAr~vme~t~h~~LvG~GA~~fA~~~G~~~~-----d~~t~~t~~~~~~w~~~~~~~  142 (162)
T 1apy_A           74 MDVGAVGDLRRIKNAIGVARKVLEHTTHTLLVGESATTFAQSMGFINE-----DLSTSASQALHSDWLARNCQP  142 (162)
T ss_dssp             CCEEEEEEECSCSCHHHHHHHHHHHBSCSEEEHHHHHHHHHHTTCCCC-----CCCCHHHHHHHHHHHHTTSCS
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCC-----CCCCHHHHHHHHHHHHHCCCC
T ss_conf             653333224624678999999980599637774799999998599775-----888889999999999862684


No 96 
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=21.42  E-value=36  Score=13.63  Aligned_cols=12  Identities=17%  Similarity=0.058  Sum_probs=5.8

Q ss_pred             CCEEEEECCCCC
Q ss_conf             767999766253
Q gi|254780653|r  312 ARTVMWNGPLGV  323 (400)
Q Consensus       312 AktI~WNGP~Gv  323 (400)
                      .+.||+.|-..-
T Consensus       205 ~~Ii~~sgR~~~  216 (301)
T 1ltq_A          205 YQIVVVSGRESG  216 (301)
T ss_dssp             CEEEEEECSCCC
T ss_pred             CEEEEEECCCHH
T ss_conf             869999377404


No 97 
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=21.21  E-value=16  Score=15.95  Aligned_cols=55  Identities=15%  Similarity=0.085  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHH--CCCEEE-ECHHHHHHHH-HHHCCCCCCCCC----CCCCCHHHHHHHHHH
Q ss_conf             255788998773--068888-6205789999-983014343333----100001356889987
Q gi|254780653|r  201 STKITLLINLVK--KVDKLV-IGGGMANSFL-VAQGMGVGRSLC----QRDFSDNVHQIAWEA  255 (400)
Q Consensus       201 sdKi~~i~~L~~--k~D~ii-igG~lantfL-~A~G~~IG~Sl~----e~~~~~~ak~i~~~a  255 (400)
                      .+.-..|..|+.  ++.+++ +|-..++.-+ .|.+..-+..++    +++..+.|++.++++
T Consensus        58 p~~g~~L~~L~~~~~ak~iLEiGT~~GyStl~lA~al~~~g~v~tiE~~~~~~~~A~~~~~~a  120 (232)
T 3cbg_A           58 PEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKA  120 (232)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHC
T ss_conf             999999999999749978999843438999999985899858999976741489999999986


No 98 
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=20.83  E-value=37  Score=13.55  Aligned_cols=58  Identities=16%  Similarity=0.046  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEE
Q ss_conf             135688998753024554303541134323233331025321201334576520035677764057767999
Q gi|254780653|r  246 DNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMW  317 (400)
Q Consensus       246 ~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~Ti~~~~~~I~~AktI~W  317 (400)
                      ....+.++.+..+|+++++     |.....   .+. +.     +++.+-++-..+...+.+.+.+|..|+.
T Consensus        59 ~~~~~~l~~l~~~gv~~~v-----C~~~~~---~rG-i~-----~~~l~~g~~~~~~~~l~~~i~~ad~vit  116 (117)
T 1jx7_A           59 YNIQQMLEILTAQNVPVKL-----CKTCTD---GRG-IS-----TLPLIDGVEIGTLVELAQWTLSADKVLT  116 (117)
T ss_dssp             CCHHHHHHHHHHTTCCEEE-----EHHHHH---HTT-CT-----TSCBCTTEEEECHHHHHHHTTTCSEEEE
T ss_pred             HHHHHHHHHHHHCCCEEEE-----EHHHHH---HCC-CC-----HHHCCCCCEECCHHHHHHHHHHCCEEEE
T ss_conf             4199999999986988998-----789998---729-97-----1431477288399999999996797884


No 99 
>2q5c_A NTRC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=20.81  E-value=37  Score=13.54  Aligned_cols=150  Identities=13%  Similarity=0.183  Sum_probs=79.7

Q ss_pred             EEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf             18999607802557889987730688886205789999983014343333100001356889987530245543035411
Q gi|254780653|r  191 LVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVV  270 (400)
Q Consensus       191 ~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D~~v  270 (400)
                      +..+.=.+-+++.+++.+++-+.+|-|+-.|+-|...-+.  .+++-=-++-...|. -+.+..+++++.+|-+-     
T Consensus        29 ~~~~~~~~~l~~~~~iA~~l~~~~DVIISRGgTa~~Ir~~--~~iPVVeI~vs~~Di-l~al~~a~~~~~kiavv-----  100 (196)
T 2q5c_A           29 FIPITKTASLTRASKIAFGLQDEVDAIISRGATSDYIKKS--VSIPSISIKVTRFDT-MRAVYNAKRFGNELALI-----  100 (196)
T ss_dssp             CEEEEEECCHHHHHHHHHHHTTTCSEEEEEHHHHHHHHTT--CSSCEEEECCCHHHH-HHHHHHHGGGCSEEEEE-----
T ss_pred             CEEEEEEEEHHHHHHHHHHHHCCCCEEEECCHHHHHHHHH--CCCCEEEECCCHHHH-HHHHHHHHHHCCCEEEE-----
T ss_conf             7567886669999999997543987999896589999982--899779980788799-99999999758978999-----


Q ss_pred             CCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             34323233331025321201334576520035677764057767999766253227436588999999998611148858
Q gi|254780653|r  271 AREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRII  350 (400)
Q Consensus       271 ~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~~~~~~  350 (400)
                      +  +           ..+          ....+.+++++.-- ..       .+....-..-...+.++.     +.++-
T Consensus       101 g--f-----------~~~----------~~~~~~i~~ll~~~-i~-------~~~~~~~~e~~~~i~~l~-----~~G~~  144 (196)
T 2q5c_A          101 A--Y-----------KHS----------IVDKHEIEAMLGVK-IK-------EFLFSSEDEITTLISKVK-----TENIK  144 (196)
T ss_dssp             E--E-----------SSC----------SSCHHHHHHHHTCE-EE-------EEEECSGGGHHHHHHHHH-----HTTCC
T ss_pred             E--C-----------CCC----------CHHHHHHHHHHCCC-EE-------EEEECCHHHHHHHHHHHH-----HCCCC
T ss_conf             6--7-----------850----------15899999985995-59-------999668899999999999-----86998


Q ss_pred             EEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHC
Q ss_conf             997480469989984887686468750799899874
Q gi|254780653|r  351 SIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLE  386 (400)
Q Consensus       351 sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~~L~  386 (400)
                      .||||+-+....+++|+...  .+.+|--+..+.++
T Consensus       145 vvVG~~~~~~~A~~~Gl~~i--li~Sg~eSI~~Al~  178 (196)
T 2q5c_A          145 IVVSGKTVTDEAIKQGLYGE--TINSGEESLRRAIE  178 (196)
T ss_dssp             EEEECHHHHHHHHHTTCEEE--ECCCCHHHHHHHHH
T ss_pred             EEECCHHHHHHHHHCCCCEE--EEECCHHHHHHHHH
T ss_conf             99998799999998599789--99654999999999


No 100
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Probab=20.72  E-value=38  Score=13.53  Aligned_cols=21  Identities=19%  Similarity=0.150  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHCCCCCCCEEE
Q ss_conf             356889987530245543035
Q gi|254780653|r  247 NVHQIAWEAKRSACEIIVPRD  267 (400)
Q Consensus       247 ~ak~i~~~a~~~~~~I~lP~D  267 (400)
                      ....+++.+++++.++++..-
T Consensus       412 gt~nll~a~~~~~~r~I~~SS  432 (660)
T 1z7e_A          412 ENLRIIRYCVKYRKRIIFPST  432 (660)
T ss_dssp             HHHHHHHHHHHTTCEEEEECC
T ss_pred             HHHHHHHHHHHHCCCEEEECC
T ss_conf             999999999983995999647


No 101
>3lu1_A WBGU; rossman fold, epimerase, lipopolysaccharide, glycan, NADH, U glcnac, isomerase; HET: NAD UD2; 2.50A {Plesiomonas shigelloides}
Probab=20.61  E-value=38  Score=13.52  Aligned_cols=82  Identities=12%  Similarity=0.142  Sum_probs=42.0

Q ss_pred             CCCCCHHHHCCCCCEEEEEEECCCCC-CCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHH
Q ss_conf             88771010015996899982016713-18577725899998898999998898099991377888984733224788887
Q gi|254780653|r    3 RLRTMNDLRDIRGLRCLLRVDWNVPF-IDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSI   81 (400)
Q Consensus         3 ~~~ti~d~~d~~gk~VlvRvD~NvPi-~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~   81 (400)
                      ++.++.+-..+++|+|||       . .+|-|        --..+++|+++|..|+.+....+.  .   ...+......
T Consensus        26 ~~~~~~~~~~~~~K~ILV-------TGgtGfI--------Gs~lv~~L~~~g~~V~~~d~~~~~--~---~~~~~~~~~~   85 (364)
T 3lu1_A           26 RYEEITQQLIFSPKTWLI-------TGVAGFI--------GSNLLEKLLKLNQVVIGLDNFSTG--H---QYNLDEVKTL   85 (364)
T ss_dssp             HHHHHHHHHHHSCCEEEE-------ETTTSHH--------HHHHHHHHHTTTCEEEEEECSSSC--C---HHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCEEEE-------ECCCCHH--------HHHHHHHHHHCCCEEEEEECCCCC--C---HHHHHHHHHH
T ss_conf             899999973558998999-------6887589--------999999999788989999789875--4---3246788764


Q ss_pred             HHHHCCCCCCCCC-CCCHHHHHHH
Q ss_conf             6431013354566-6310255665
Q gi|254780653|r   82 AESILHKNILFVN-DCIGSTLSQS  104 (400)
Q Consensus        82 l~~~l~~~V~fi~-d~~g~~~~~~  104 (400)
                      ....-...+.|+. |.......+.
T Consensus        86 ~~~~~~~~~~~i~~Di~d~~~~~~  109 (364)
T 3lu1_A           86 VSTEQWSRFCFIEGDIRDLTTCEQ  109 (364)
T ss_dssp             SCHHHHTTEEEEECCTTSHHHHHH
T ss_pred             HHHCCCCCCEEEECCCCCHHHHHH
T ss_conf             200015770799740579899999


No 102
>1dct_A Protein (modification methylase HAEIII); enzyme, cytosine methylase, transferase/DNA complex; HET: DNA C49 5CM; 2.80A {Haemophilus influenzae biotypeaegyptius} SCOP: c.66.1.26
Probab=20.57  E-value=38  Score=13.51  Aligned_cols=22  Identities=23%  Similarity=0.132  Sum_probs=15.7

Q ss_pred             HHHHHHCCCCCEEECCHHHHCCC
Q ss_conf             66553136464898242430343
Q gi|254780653|r  102 SQSIASLSEGGIILAENVRFYSE  124 (400)
Q Consensus       102 ~~~i~~l~~g~ilLLEN~Rf~~~  124 (400)
                      ...++.++| .+++||||+-...
T Consensus        95 ~r~i~~~~P-~~~~lENV~~~~~  116 (324)
T 1dct_A           95 IRILKQKKP-IFFLAENVKGMMA  116 (324)
T ss_dssp             HHHHHHHCC-SEEEEEEEGGGGS
T ss_pred             HHHHHHHCC-CEEEEECCCHHHH
T ss_conf             999998589-7899865411344


No 103
>3dfr_A Dihydrofolate reductase; oxido-reductase; HET: NDP MTX; 1.70A {Lactobacillus casei} SCOP: c.71.1.1 PDB: 1ao8_A* 1bzf_A* 1dis_A* 1diu_A* 1lud_A* 2hm9_A* 2hqp_A*
Probab=20.44  E-value=38  Score=13.49  Aligned_cols=25  Identities=24%  Similarity=0.527  Sum_probs=18.9

Q ss_pred             EEEEEEECCHHHHHHHHHHHHHCCCEEEECH
Q ss_conf             1899960780255788998773068888620
Q gi|254780653|r  191 LVAIVGGSKVSTKITLLINLVKKVDKLVIGG  221 (400)
Q Consensus       191 ~v~IiGGaKisdKi~~i~~L~~k~D~iiigG  221 (400)
                      -+.|+||+++      .+.+++.+|.+++.=
T Consensus        93 ~i~IiGG~~I------Y~~~l~~~d~i~lT~  117 (162)
T 3dfr_A           93 ELVIAGGAQI------FTAFKDDVDTLLVTR  117 (162)
T ss_dssp             CEEECCCHHH------HHHTGGGCCEEEEEE
T ss_pred             CEEEECHHHH------HHHHHHHCCEEEEEE
T ss_conf             5899687999------999886579999987


Done!