Query gi|254780653|ref|YP_003065066.1| phosphoglycerate kinase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 400 No_of_seqs 131 out of 2640 Neff 5.9 Searched_HMMs 23785 Date Tue May 31 18:12:29 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780653.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1php_A 3-phosphoglycerate kina 100.0 0 0 1032.1 35.2 394 2-399 1-394 (394) 2 1v6s_A Phosphoglycerate kinase 100.0 0 0 1026.0 35.2 390 4-398 1-390 (390) 3 1vpe_A Phosphoglycerate kinase 100.0 0 0 1015.9 35.2 393 5-399 3-396 (398) 4 16pk_A PGK, 3-phosphoglycerate 100.0 0 0 1010.2 34.9 393 4-399 2-415 (415) 5 1ltk_A Phosphoglycerate kinase 100.0 0 0 1007.7 32.8 397 1-399 11-425 (425) 6 2wzb_A Phosphoglycerate kinase 100.0 0 0 1004.5 31.5 395 1-398 2-415 (416) 7 1qpg_A PGK, 3-phosphoglycerate 100.0 0 0 1003.4 32.2 396 1-399 2-414 (415) 8 2cun_A Phosphoglycerate kinase 100.0 0 0 998.7 31.0 388 4-399 1-401 (410) 9 1zmr_A Phosphoglycerate kinase 100.0 0 0 985.1 33.3 382 2-399 1-384 (387) 10 1fw8_A PGK P72, phosphoglycera 100.0 0 0 806.2 24.5 327 71-399 2-344 (416) 11 1fw8_A PGK P72, phosphoglycera 99.7 8E-17 3.4E-21 127.5 7.6 64 5-69 351-415 (416) 12 1e0t_A Pyruvate kinase, PK; ph 92.3 0.44 1.8E-05 26.0 6.8 311 42-374 16-399 (470) 13 2e28_A Pyruvate kinase, PK; al 68.5 1.4 5.8E-05 22.8 1.1 312 42-377 17-405 (587) 14 1yj5_A 5' polynucleotide kinas 67.8 1.3 5.3E-05 23.0 0.8 165 41-220 58-255 (383) 15 1yad_A Regulatory protein TENI 66.4 6.5 0.00028 18.4 9.1 163 32-224 21-196 (221) 16 1kyq_A Met8P, siroheme biosynt 66.3 3.5 0.00015 20.2 2.8 42 5-61 3-44 (274) 17 3hqn_D Pyruvate kinase, PK; TI 66.2 3.7 0.00016 20.0 2.9 328 23-375 11-423 (499) 18 3dfz_A SIRC, precorrin-2 dehyd 65.3 3.4 0.00014 20.2 2.6 35 11-60 27-61 (223) 19 1fmt_A Methionyl-tRNA FMet for 62.6 7.7 0.00032 18.0 6.4 70 40-111 13-83 (314) 20 2ap9_A NAG kinase, acetylgluta 55.6 10 0.00042 17.2 3.7 48 12-66 22-69 (299) 21 2j28_9 Signal recognition part 55.4 10 0.00043 17.2 10.6 155 54-235 99-269 (430) 22 3gg8_A Pyruvate kinase; malari 54.3 7.4 0.00031 18.1 2.7 311 42-371 50-435 (511) 23 2p65_A Hypothetical protein PF 53.9 11 0.00045 17.0 6.1 135 165-312 21-171 (187) 24 1vb3_A Threonine synthase; PLP 52.8 11 0.00045 17.1 3.4 24 229-252 260-283 (428) 25 3ksu_A 3-oxoacyl-acyl carrier 52.5 11 0.00048 16.9 5.7 68 11-99 7-75 (262) 26 2ivn_A O-sialoglycoprotein end 52.2 9.3 0.00039 17.5 3.0 54 36-95 45-107 (330) 27 3gr4_A Pyruvate kinase isozyme 52.2 4.1 0.00017 19.8 1.1 317 42-377 76-475 (550) 28 2v5h_A Acetylglutamate kinase; 50.4 12 0.00051 16.7 3.8 48 11-65 45-92 (321) 29 3f9r_A Phosphomannomutase; try 48.7 10 0.00042 17.2 2.7 24 40-65 24-47 (246) 30 3kwp_A Predicted methyltransfe 48.3 13 0.00055 16.5 6.2 25 41-65 76-100 (296) 31 2w9h_A DHFR, dihydrofolate red 47.6 13 0.00057 16.4 3.4 24 192-221 90-113 (159) 32 1f2t_B RAD50 ABC-ATPase; DNA d 47.4 13 0.00056 16.4 3.2 33 309-345 79-111 (148) 33 1gs5_A Acetylglutamate kinase; 47.1 14 0.00058 16.4 3.4 36 32-67 13-48 (258) 34 2bln_A Protein YFBG; transfera 46.0 14 0.0006 16.3 6.2 71 41-116 11-82 (305) 35 3ma8_A Pyruvate kinase; parasi 45.6 7.9 0.00033 17.9 1.8 306 42-371 66-458 (534) 36 3e70_C DPA, signal recognition 44.6 15 0.00063 16.1 8.5 125 71-219 142-275 (328) 37 2zos_A MPGP, mannosyl-3-phosph 43.9 4.1 0.00017 19.7 0.1 45 30-82 10-54 (249) 38 1pjq_A CYSG, siroheme synthase 43.2 16 0.00066 16.0 3.6 36 11-61 8-43 (457) 39 3khd_A Pyruvate kinase; malari 43.2 11 0.00046 17.0 2.2 303 42-367 60-440 (520) 40 1xpj_A Hypothetical protein; s 42.9 16 0.00067 15.9 4.1 30 37-66 24-53 (126) 41 3k35_A Mono-ADP-ribosyltransfe 41.8 16 0.00069 15.8 2.9 57 188-263 181-237 (318) 42 1ii8_B RAD50 ABC-ATPase; MRE11 41.4 17 0.0007 15.8 3.0 44 307-354 103-146 (174) 43 3ctl_A D-allulose-6-phosphate 40.8 17 0.00072 15.7 4.6 78 179-271 98-177 (231) 44 2fpr_A Histidine biosynthesis 40.8 17 0.00072 15.7 4.1 46 40-86 45-91 (176) 45 3en9_A Glycoprotease, O-sialog 39.8 18 0.00074 15.6 5.4 34 286-320 322-356 (540) 46 3ix9_A Dihydrofolate reductase 39.8 15 0.00065 16.0 2.5 25 191-221 116-140 (190) 47 1wr8_A Phosphoglycolate phosph 39.7 12 0.0005 16.7 2.0 34 30-65 11-46 (231) 48 3niw_A Haloacid dehalogenase-l 38.6 16 0.00068 15.9 2.5 34 30-65 13-48 (279) 49 1i24_A Sulfolipid biosynthesis 38.2 19 0.00079 15.5 6.2 96 4-116 1-107 (404) 50 2w3w_A Dihydrofolate reductase 37.4 16 0.00065 16.0 2.2 24 191-220 98-121 (167) 51 3eno_A Putative O-sialoglycopr 37.3 19 0.00081 15.4 3.4 59 37-96 51-113 (334) 52 2yyb_A Hypothetical protein TT 36.7 16 0.00068 15.9 2.2 46 41-91 45-92 (242) 53 2wdc_A SOXB, sulfur oxidation 35.7 20 0.00086 15.2 3.9 26 39-64 240-266 (562) 54 3hno_A Pyrophosphate-dependent 35.5 21 0.00087 15.2 3.3 29 145-173 114-158 (419) 55 1vdr_A DHFR, dihydrofolate red 35.5 17 0.0007 15.8 2.1 24 191-220 96-119 (162) 56 3dau_A Dihydrofolate reductase 34.8 18 0.00074 15.7 2.2 26 190-221 89-114 (159) 57 2fhx_A SPM-1; metallo-beta-lac 33.2 18 0.00077 15.5 2.0 38 25-62 31-77 (246) 58 1fmc_A 7 alpha-hydroxysteroid 32.8 23 0.00096 14.9 6.7 63 5-92 2-64 (255) 59 2j5v_A Glutamate 5-kinase; pro 32.8 23 0.00096 14.9 4.8 212 15-238 4-254 (367) 60 3inp_A D-ribulose-phosphate 3- 32.0 23 0.00098 14.9 3.7 78 180-272 127-206 (246) 61 3myu_A High affinity transport 31.7 13 0.00054 16.5 1.1 43 74-121 27-75 (344) 62 3ek6_A Uridylate kinase; UMPK 31.6 24 0.001 14.8 6.8 53 12-64 6-59 (243) 63 2pju_A Propionate catabolism o 31.4 24 0.001 14.8 6.5 147 191-385 40-188 (225) 64 2bty_A Acetylglutamate kinase; 31.2 24 0.001 14.8 4.0 48 11-65 17-64 (282) 65 3jwk_A Dihydrofolate reductase 29.5 25 0.001 14.7 2.2 25 191-221 98-122 (168) 66 1rpx_A Protein (ribulose-phosp 29.2 26 0.0011 14.5 4.1 77 180-271 111-189 (230) 67 1df7_A DHFR, dihydrofolate red 28.5 20 0.00085 15.3 1.6 25 191-221 90-114 (159) 68 1ecf_A Glutamine phosphoribosy 28.4 27 0.0011 14.5 4.4 14 104-117 220-233 (504) 69 1bia_A BIRA bifunctional prote 28.1 18 0.00078 15.5 1.4 169 41-224 35-208 (321) 70 1j8m_F SRP54, signal recogniti 27.7 28 0.0012 14.4 8.7 128 71-220 111-247 (297) 71 2z3y_A Lysine-specific histone 27.6 26 0.0011 14.6 2.0 29 41-69 118-146 (662) 72 1z9d_A Uridylate kinase, UK, U 27.5 28 0.0012 14.4 6.0 49 16-64 8-57 (252) 73 3dma_A Exopolyphosphatase-rela 27.3 28 0.0012 14.3 3.5 50 40-93 8-57 (343) 74 3mpo_A Predicted hydrolase of 27.3 28 0.0012 14.3 3.9 45 30-82 13-59 (279) 75 2rd5_A Acetylglutamate kinase- 26.5 29 0.0012 14.2 4.6 48 11-65 32-79 (298) 76 1vl8_A Gluconate 5-dehydrogena 26.4 29 0.0012 14.2 6.7 64 7-93 13-76 (267) 77 1tqj_A Ribulose-phosphate 3-ep 25.9 30 0.0013 14.2 4.1 77 180-271 105-183 (230) 78 3gve_A YFKN protein; alpha-bet 25.8 30 0.0013 14.2 4.9 21 37-60 41-61 (341) 79 2obb_A Hypothetical protein; s 25.6 30 0.0013 14.1 2.9 39 39-85 26-64 (142) 80 3nwy_A Uridylate kinase; allos 25.3 31 0.0013 14.1 5.9 52 12-63 46-98 (281) 81 2ffh_A Protein (FFH); SRP54, s 25.3 31 0.0013 14.1 9.0 154 54-235 98-267 (425) 82 3ia4_A Dihydrofolate reductase 25.1 22 0.00093 15.0 1.3 25 191-221 92-116 (162) 83 3dm5_A SRP54, signal recogniti 25.1 31 0.0013 14.1 7.8 155 53-235 99-269 (443) 84 3n0l_A Serine hydroxymethyltra 24.9 22 0.00095 15.0 1.3 100 118-218 90-195 (417) 85 1rlm_A Phosphatase; HAD family 24.5 32 0.0013 14.0 2.9 23 41-65 25-47 (271) 86 3gdg_A Probable NADP-dependent 24.2 32 0.0013 14.0 5.4 72 4-97 9-83 (267) 87 1ma3_A SIR2-AF2, transcription 24.2 30 0.0013 14.2 1.8 56 189-263 159-214 (253) 88 3gbx_A Serine hydroxymethyltra 24.0 19 0.00078 15.5 0.7 101 118-219 95-201 (420) 89 1nmo_A Hypothetical protein YB 23.4 33 0.0014 13.9 2.2 41 190-234 166-207 (247) 90 2pnf_A 3-oxoacyl-[acyl-carrier 23.3 33 0.0014 13.9 5.9 63 12-97 4-67 (248) 91 1juv_A DHFR, dihydrofolate red 22.9 34 0.0014 13.8 2.5 25 191-221 123-147 (193) 92 3cse_A Dihydrofolate reductase 22.5 27 0.0011 14.5 1.3 26 191-222 117-142 (227) 93 2iz6_A Molybdenum cofactor car 22.2 35 0.0015 13.7 4.1 52 186-237 10-75 (176) 94 3g3d_A UMP synthase, uridine 5 22.0 32 0.0013 14.0 1.6 60 75-138 68-132 (312) 95 1apy_A Aspartylglucosaminidase 21.5 36 0.0015 13.6 6.8 69 189-262 74-142 (162) 96 1ltq_A Polynucleotide kinase; 21.4 36 0.0015 13.6 5.1 12 312-323 205-216 (301) 97 3cbg_A O-methyltransferase; cy 21.2 16 0.00067 16.0 -0.1 55 201-255 58-120 (232) 98 1jx7_A Hypothetical protein YC 20.8 37 0.0016 13.5 1.8 58 246-317 59-116 (117) 99 2q5c_A NTRC family transcripti 20.8 37 0.0016 13.5 1.8 150 191-386 29-178 (196) 100 1z7e_A Protein aRNA; rossmann 20.7 38 0.0016 13.5 6.0 21 247-267 412-432 (660) 101 3lu1_A WBGU; rossman fold, epi 20.6 38 0.0016 13.5 3.0 82 3-104 26-109 (364) 102 1dct_A Protein (modification m 20.6 38 0.0016 13.5 2.2 22 102-124 95-116 (324) 103 3dfr_A Dihydrofolate reductase 20.4 38 0.0016 13.5 1.9 25 191-221 93-117 (162) No 1 >1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus stearothermophilus} SCOP: c.86.1.1 Probab=100.00 E-value=0 Score=1032.15 Aligned_cols=394 Identities=41% Similarity=0.697 Sum_probs=385.6 Q ss_pred CCCCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHH Q ss_conf 88877101001599689998201671318577725899998898999998898099991377888984733224788887 Q gi|254780653|r 2 SRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSI 81 (400) Q Consensus 2 ~~~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~ 81 (400) |++|||+|+ |++||+||||+|||||+++|+|+|++||++++|||++|+++||||||+||||||+|++++++||+||+++ T Consensus 1 M~~ktl~d~-d~~~K~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvvi~sH~GRP~g~~~~~~SL~~~a~~ 79 (394) T 1php_A 1 MNKKTIRDV-DVRGKRVFCRVDFNVPMEQGAITDDTRIRAALPTIRYLIEHGAKVILASHLGRPKGKVVEELRLDAVAKR 79 (394) T ss_dssp CCBCBGGGS-CCTTCEEEEECCCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCSSCCGGGCSHHHHHH T ss_pred CCCCCCCCC-CCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHH T ss_conf 997840003-8789989999515778529968976899999999999997899899986888999987864575999999 Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCHHHHHHHHCCCCCEEEECCHHHHCCCCCCEEEC Q ss_conf 64310133545666310255665531364648982424303432100024665312436424754404401137633302 Q gi|254780653|r 82 AESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGL 161 (400) Q Consensus 82 l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n~~~f~k~La~laDiyVnDAF~~aHR~haS~~gi 161 (400) |+++|+++|.|++|++|+.+++++++|++|+|+||||+|||+||++|+++|+++||++||+|||||||||||+|||++|+ T Consensus 80 L~~~l~~~v~f~~d~~g~~~~~~i~~l~~g~i~lLENvRf~~~E~~nd~~fak~La~l~DiyVNDAF~~sHR~haS~~gi 159 (394) T 1php_A 80 LGELLERPVAKTNEAVGDEVKAAVDRLNEGDVLLLENVRFYPGEEKNDPELAKAFAELADLYVNDAFGAAHRAHASTEGI 159 (394) T ss_dssp HHHHHTSCCEECSCSSSHHHHHHHHTCCTTCEEECCCGGGSHHHHHTCHHHHHHHHTTCSEEEECCGGGTTSCCTTTTGG T ss_pred HHHHHCCCCCEECCCCCHHHHHHHHHCCCCCEEEHHHHHHCCCCHHCHHHHHHHHHHHCCEEEECCCCHHHCCCCCHHHH T ss_conf 99864556410013356779999961688868633757757531105199999987538899865400121148531214 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCCCC Q ss_conf 33210003325565777653310166787189996078025578899877306888862057899999830143433331 Q gi|254780653|r 162 SHLLPSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQ 241 (400) Q Consensus 162 ~~~lps~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~Sl~e 241 (400) |+++|||||++||+|+++|++++++|+||+++||||||+||||++|++|++++|+|++||+||||||+|+|++||+|++| T Consensus 160 ~~~lps~aG~l~ekEl~~L~k~l~~p~rP~~aIiGGaKisdKi~~l~~l~~k~D~iiigG~mantfL~a~G~~iG~sl~e 239 (394) T 1php_A 160 AHYLPAVAGFLMEKELEVLGKALSNPDRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLE 239 (394) T ss_dssp GGTSCEEECHHHHHHHHHHHHHHHSCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTHHHHHHHHTTCCCTTSCCC T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHCCCCCCCCHHH T ss_conf 44154777878999999999998388997699971573654899999997532415764399999999859976721134 Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCC Q ss_conf 00001356889987530245543035411343232333310253212013345765200356777640577679997662 Q gi|254780653|r 242 RDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPL 321 (400) Q Consensus 242 ~~~~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~ 321 (400) +++++.++++++++++++++|++|+|++|+.++....+.++++++++|++|+++||||+|++.|+++|.+|+|||||||| T Consensus 240 ~~~~~~a~~i~~~~~~~~~~i~lP~D~v~~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~Ti~~~~~~I~~aktI~wNGP~ 319 (394) T 1php_A 240 EDKIELAKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRDVIRESKLVVWNGPM 319 (394) T ss_dssp GGGHHHHHHHHHHHHHHTCEEECCSEEEEESSSSTTSCEEEEEGGGCCTTCEEEEECHHHHHHHHHHHHTCSEEEEESCS T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEHHHCCCCCEEEEECHHHHHHHHHHHCCCCEEEEECCC T ss_conf 55578999999988861985147851353103456566358642231468547873867899999864437889997782 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCHHHHHHCCC Q ss_conf 532274365889999999986111488589974804699899848876864687507998998748998689884079 Q gi|254780653|r 322 GVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALSGH 399 (400) Q Consensus 322 GvfE~~~F~~GT~~l~~~ia~~~~~~~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~~L~G~~LPgi~aL~~~ 399 (400) |+||+++|+.||.++++++++. +++|||||||||++|++++|+.++|+||||||||||+||+|++||||+||++. T Consensus 320 G~fE~~~F~~GT~~l~~~ia~s---~~a~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~~L~G~~LPgi~aL~~k 394 (394) T 1php_A 320 GVFEMDAFAHGTKAIAEALAEA---LDTYSVIGGGDSAAAVEKFGLADKMDHISTGGGASLEFMEGKQLPGVVALEDK 394 (394) T ss_dssp SCTTSGGGCHHHHHHHHHHHHC---TTCEEEECSHHHHHHHHHTTCGGGSSEECSCTHHHHHHHTTCCCHHHHTSCBC T ss_pred CCCCCCCHHHHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHCCCCCCCEEEECCHHHHHHHHCCCCCCHHHHHCCC T ss_conf 5544661538999999999965---89859994738999999739867860896585999999879996368885069 No 2 >1v6s_A Phosphoglycerate kinase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A Probab=100.00 E-value=0 Score=1025.97 Aligned_cols=390 Identities=40% Similarity=0.659 Sum_probs=382.0 Q ss_pred CCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 87710100159968999820167131857772589999889899999889809999137788898473322478888764 Q gi|254780653|r 4 LRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIAE 83 (400) Q Consensus 4 ~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l~ 83 (400) ||||+|+ |++||+||||+|||||++||+|+|++||++++|||++|+++||||||+||||||+|+ ++++||+||+++|+ T Consensus 1 mktl~d~-d~~~k~VlvRvD~NvPi~~g~I~dd~RI~~~lpTI~~l~~~~akvvi~SHlGRPkg~-~~~~SL~~va~~L~ 78 (390) T 1v6s_A 1 MRTLLDL-DPKGKRVLVRVDYNVPVQDGKVQDETRILESLPTLRHLLAGGASLVLLSHLGRPKGP-DPKYSLAPVGEALR 78 (390) T ss_dssp CCBGGGS-CCTTCEEEEECCCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCSSC-CGGGCSHHHHHHHH T ss_pred CCCHHCC-CCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC-CCCCCHHHHHHHHH T ss_conf 9850106-878999999932466633997787489999999999999889989998058999998-97736899999999 Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCHHHHHHHHCCCCCEEEECCHHHHCCCCCCEEECCC Q ss_conf 31013354566631025566553136464898242430343210002466531243642475440440113763330233 Q gi|254780653|r 84 SILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSH 163 (400) Q Consensus 84 ~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n~~~f~k~La~laDiyVnDAF~~aHR~haS~~gi~~ 163 (400) ++|+++|.|++|++++.+++++++|++|+|+||||+|||+||++|+++|+++||++||+|||||||||||+|||++|||+ T Consensus 79 ~~L~~~v~~~~~~~~~~~~~~i~~l~~g~I~LLENvRF~~gE~~nd~~f~~~La~l~DiyVnDAF~~aHR~haS~vgi~~ 158 (390) T 1v6s_A 79 AHLPEARFAPFPPGSEEARREAEALRPGEVLLLENVRFEPGEEKNDPELSARYARLGEAFVLDAFGSAHRAHASVVGVAR 158 (390) T ss_dssp HHCTTEEECCSCTTSHHHHHHHHTCCTTCEEECSCGGGSTTTTTTCHHHHHHHGGGCSEEEECCGGGTTSCCCCCCCGGG T ss_pred HHCCCCEEEECCCCCHHHHHHHHCCCCCCEEEEHHHHCCCCCCCCCHHHHHHHHHCCCEEEECHHHHHHHCCCCHHHHHH T ss_conf 76387617521454177776764168887886332221552000799999877632668985325443212531112445 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 21000332556577765331016678718999607802557889987730688886205789999983014343333100 Q gi|254780653|r 164 LLPSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRD 243 (400) Q Consensus 164 ~lps~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~Sl~e~~ 243 (400) ++|||||+|||+|+++|++++++|+||+++||||||+||||++|++|++++|+|++||+||||||+|+|++||+|++|++ T Consensus 159 ~lps~aG~l~ekEi~~L~~~l~~p~rP~~aIlGGaKisdKi~~i~~L~~k~D~IiigG~mAntFL~a~G~~iG~sl~e~~ 238 (390) T 1v6s_A 159 LLPAYAGFLMEKEVRALSRLLKDPERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEED 238 (390) T ss_dssp TSCEEECHHHHHHHHHHHTTTSSCCSSEEEEECCSCGGGTHHHHHHHGGGCSEEEECSTTHHHHHHHTTCBCTTCCCCGG T ss_pred HCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHCCCCCCCCCCCCC T ss_conf 35233308899999999999718899759998477477799999999986599997848999999975987676540000 Q ss_pred CCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 00135688998753024554303541134323233331025321201334576520035677764057767999766253 Q gi|254780653|r 244 FSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGV 323 (400) Q Consensus 244 ~~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~Gv 323 (400) .++.++++++.+++.++++++|+|++|..++..+.++..+++++||++|+++||||+|++.|+++|++|+|||||||||+ T Consensus 239 ~~~~~~~i~~~a~~~~~~~~lp~d~~~~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~Ti~~~~~~I~~aktI~wNGP~Gv 318 (390) T 1v6s_A 239 RLDLAKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFARALEGARTVFWNGPMGV 318 (390) T ss_dssp GHHHHHHHHHHHHHHTCEEECCSEEEEESSCCTTCCCEEEETTBCCTTCEEEEECHHHHHHHHHHTTTCSEEEEESCSSC T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 57899999999876167767870100132236775324564322043320001483679999987505675688456444 Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCHHHHHHCC Q ss_conf 227436588999999998611148858997480469989984887686468750799899874899868988407 Q gi|254780653|r 324 FEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALSG 398 (400) Q Consensus 324 fE~~~F~~GT~~l~~~ia~~~~~~~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~~L~G~~LPgi~aL~~ 398 (400) ||+++|+.||.++++++++ .++++||||||||++|++++|+.++|+||||||||+|+||+|++||||+||+. T Consensus 319 fE~~~F~~GT~~i~~~ia~---~~~a~sivGGGdT~~ai~~~g~~~~~~hvSTgGGA~Le~L~G~~LPgi~aL~~ 390 (390) T 1v6s_A 319 FEVPPFDEGTLAVGQAIAA---LEGAFTVVGGGDSVAAVNRLGLKERFGHVSTGGGASLEFLEKGTLPGLEVLEG 390 (390) T ss_dssp TTSTTTTHHHHHHHHHHHT---CSSCEEEEESHHHHHHHHTTTCGGGSSEECCSSSHHHHHHHHSCCHHHHTTCC T ss_pred CCCCCHHHHHHHHHHHHHH---CCCCEEEEECHHHHHHHHHCCCCCCCEEEECCHHHHHHHHCCCCCCCCHHCCC T ss_conf 1357341689999999985---58997999388999999974986786189887899999977999652212059 No 3 >1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability, crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga maritima} SCOP: c.86.1.1 Probab=100.00 E-value=0 Score=1015.86 Aligned_cols=393 Identities=40% Similarity=0.696 Sum_probs=381.9 Q ss_pred CCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 77101001599689998201671318577725899998898999998898099991377888984733224788887643 Q gi|254780653|r 5 RTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIAES 84 (400) Q Consensus 5 ~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l~~ 84 (400) .||+|+ |++||+||||+|||||+++|+|+|++||++++|||++|+++||||||+||||||+|++++++||+||+++|++ T Consensus 3 ltl~d~-~l~gK~VlvRvD~NvPi~~g~I~d~~RI~~~lpTI~~Ll~~~akvvi~SH~GRPkgk~~~~~SL~~va~~L~~ 81 (398) T 1vpe_A 3 MTIRDV-DLKGKRVIMRVDFNVPVKDGVVQDDTRIRAALPTIKYALEQGAKVILLSHLGRPKGEPSPEFSLAPVAKRLSE 81 (398) T ss_dssp CBGGGS-CCTTCEEEEECCCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCSSCCGGGCSHHHHHHHHH T ss_pred CCHHCC-CCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 763004-8579989999334676209918972899999999999998899899985888999987876588999999998 Q ss_pred HCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCHHHHHHHHCCCCCEEEECCHHHHCCCCCCEEECCCC Q ss_conf 10133545666310255665531364648982424303432100024665312436424754404401137633302332 Q gi|254780653|r 85 ILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHL 164 (400) Q Consensus 85 ~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n~~~f~k~La~laDiyVnDAF~~aHR~haS~~gi~~~ 164 (400) +|+++|.|++||+++.++++++++++|+|+||||+|||+||++|+++|+++||++||+|||||||||||+|||++|+|++ T Consensus 82 ~l~~~V~fi~d~~g~~~~~~i~~l~~g~i~LLENvRf~~~E~~n~~~f~k~La~laDiyVnDAF~~sHR~haS~~gi~~~ 161 (398) T 1vpe_A 82 LLGKEVKFVPAVVGDEVKKAVEELKEGEVLLLENTRFHPGETKNDPELAKFWASLADIHVNDAFGTAHRAHASNVGIAQF 161 (398) T ss_dssp HHTSCCEEESCSSSHHHHHHHHTCCTTEEEEECCGGGSTHHHHTCHHHHHHHHTTCSEEEECCGGGTTSCCTTTTGGGGT T ss_pred HHCCCEEEEECCCCHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCHHHHHHH T ss_conf 74885687513576678998734686768852423305065541899999873058877734045442037542506676 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 10003325565777653310166787189996078025578899877306888862057899999830143433331000 Q gi|254780653|r 165 LPSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDF 244 (400) Q Consensus 165 lps~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~Sl~e~~~ 244 (400) +|||+|++||+|+++|++++.+|+||+++|+||||+||||++|++|++++|+|++||+||||||+|+|++||+|++|+++ T Consensus 162 lps~aG~l~ekEi~~l~~~~~~~~~P~~aIlGGaKisdKi~ll~~l~~k~D~iiigG~~antfL~a~G~~iG~s~~e~~~ 241 (398) T 1vpe_A 162 IPSVAGFLMEKEIKFLSKVTYNPEKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDK 241 (398) T ss_dssp SCEEECHHHHHHHHHHHHHHHCCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTTHHHHHHHTSCCCTTSCCCGGG T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCEEEECCHHHHHHHHHCCCCCCCCCCCHHH T ss_conf 45565799999999974100178997699995353304999999999860420226299999999779876754355124 Q ss_pred CHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCC-CEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 01356889987530245543035411343232333310253-21201334576520035677764057767999766253 Q gi|254780653|r 245 SDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSA-QSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGV 323 (400) Q Consensus 245 ~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~~~~~~-~~i~~~~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~Gv 323 (400) ++.++++++.+++++++|++|+|++|+.+++...+...... +.+|++|+++||||+|++.|+++|++|+|||||||||+ T Consensus 242 ~~~~~~i~~~a~~~~~~i~lp~d~~v~~~~~~~~~~~~~~~~~~i~~~~~ilDIG~~Ti~~~~~~I~~a~tI~WNGP~G~ 321 (398) T 1vpe_A 242 IDLAKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFKQKLSDAKTVVWNGPMGV 321 (398) T ss_dssp HHHHHHHHHHHHHTTCEEECCSEEEEESSCSTTCCCEEEETTTCCCTTCEEEEECHHHHHHHHHHHTTCSEEEEESCSSC T ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCEEECCCCCCCCCCEECCCCCHHHHHHHHHHHHCCEEEEECCCCC T ss_conf 78999999977752986678842798534567777227532247887762005670378999999987798999667244 Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCHHHHHHCCC Q ss_conf 2274365889999999986111488589974804699899848876864687507998998748998689884079 Q gi|254780653|r 324 FEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALSGH 399 (400) Q Consensus 324 fE~~~F~~GT~~l~~~ia~~~~~~~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~~L~G~~LPgi~aL~~~ 399 (400) ||+++|+.||.+++++++++++ +++|||||||||++|++++|+.++|+||||||||+|+||+|++||||+||+.. T Consensus 322 fE~~~F~~GT~~l~~~ia~~~~-~~~~sivGGGdT~aai~~~g~~~~f~hvSTgGGA~Le~L~G~~LPgi~aL~~~ 396 (398) T 1vpe_A 322 FEIDDFAEGTKQVALAIAALTE-KGAITVVGGGDSAAAVNKFGLEDKFSHVSTGGGASLEFLEGKELPGIASMRIK 396 (398) T ss_dssp TTSGGGCHHHHHHHHHHHHHHH-TTCEEEEESHHHHHHHHHTTCGGGSSEEESCHHHHHHHHTSSCCHHHHTSCBC T ss_pred CCCCCHHHHHHHHHHHHHHHHC-CCCEEEEECHHHHHHHHHCCCCCCCEEEECCHHHHHHHHCCCCCHHHHHHHHC T ss_conf 2466351799999999998723-89989991879999999749867970896777999999879996089998635 No 4 >16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis, transferase, bisubstrate, analog; HET: BIS EPE; 1.60A {Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A* Probab=100.00 E-value=0 Score=1010.16 Aligned_cols=393 Identities=37% Similarity=0.666 Sum_probs=379.1 Q ss_pred CCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC---------------- Q ss_conf 8771010015996899982016713185777258999988989999988980999913778889---------------- Q gi|254780653|r 4 LRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQS---------------- 67 (400) Q Consensus 4 ~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg---------------- 67 (400) .|||+|+ |++|||||||||||||+++|+|+|++||++++|||+||+++||||||+|||||||| T Consensus 2 kktl~d~-d~~~K~VlvRvD~NvPi~~g~I~D~~RI~~~lpTI~~ll~~gakvvl~SHlGRPkg~~~~~~~~~~~~~~~~ 80 (415) T 16pk_A 2 KKSINEC-DLKGKKVLIRVDFNVPVKNGKITNDYRIRSALPTLKKVLTEGGSCVLMSHLGRPKGIPMAQAGKIRSTGGVP 80 (415) T ss_dssp BCBGGGS-CCTTCEEEEEECCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCCBCGGGHHHHHHTTCCT T ss_pred CCCCCCC-CCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC T ss_conf 9740014-888998999925676563996897789999999999999789979998078898987655322222233322 Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCH----HHHHHHHCCCCCEE Q ss_conf 84733224788887643101335456663102556655313646489824243034321000----24665312436424 Q gi|254780653|r 68 KSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEERND----PDFVRMLSRNGDFY 143 (400) Q Consensus 68 ~~~~~~Sl~~v~~~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n~----~~f~k~La~laDiy 143 (400) ++++++||+||+++|+++|+++|.|++|+++. .+++++|++|+|+||||+|||+||++|+ +.|+|+||++||+| T Consensus 81 ~~~~~~SL~pva~~L~~~l~~~V~f~~d~~~~--~~~i~~l~~g~I~LLEN~RF~~~E~~~~~~~~~~fak~La~laDiy 158 (415) T 16pk_A 81 GFQQKATLKPVAKRLSELLLRPVTFAPDCLNA--ADVVSKMSPGDVVLLENVRFYKEEGSKKAKDREAMAKILASYGDVY 158 (415) T ss_dssp TCCGGGCSHHHHHHHHHHHTSCCEEESCTTSC--HHHHHTCCTTCEEEECCGGGBGGGGCSSHHHHHHHHHHHHTTCSEE T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHH--HHHHHCCCCCCEEEECCCCEECCCCCCCCCCHHHHHHHHHHHCCEE T ss_conf 36822472889999999858560003210378--9999627988799852210412566322234799999997528898 Q ss_pred EECCHHHHCCCCCCEEECCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHH Q ss_conf 7544044011376333023321000-332556577765331016678718999607802557889987730688886205 Q gi|254780653|r 144 INDAFSVSHRAHASITGLSHLLPSY-IGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGG 222 (400) Q Consensus 144 VnDAF~~aHR~haS~~gi~~~lps~-aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~ 222 (400) ||||||||||+|||++|||+++|+| +|+|||+|+++|++++++|+||+++||||||++|||++|++|++++|+|++||+ T Consensus 159 VNDAFg~aHR~haS~~gi~~~lps~~gg~L~ekEl~~L~~~l~~p~rP~vaIlGGaKisdKi~vl~~l~~k~D~iiigG~ 238 (415) T 16pk_A 159 ISDAFGTAHRDSATMTGIPKILGNGAAGYLMEKEISYFAKVLGNPPRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGA 238 (415) T ss_dssp EEECGGGTTSCCTTTTHHHHHHTCCEECHHHHHHHHHHHHHHSCCCSSEEEEECSSCSGGGHHHHHHHGGGCSEEEECTT T ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEECCH T ss_conf 72574532578754051578865420168999999999999709999848996056634489999999974582454518 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHH Q ss_conf 78999998301434333310000135688998753024554303541134323233331025321201334576520035 Q gi|254780653|r 223 MANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTV 302 (400) Q Consensus 223 lantfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~Ti 302 (400) ||||||+|+|++||+|++|+++++.++++++.+++++++|++|+|++|+.++....+..+.+.+++|++|+++||||+|+ T Consensus 239 mantfL~a~G~~iG~sl~e~~~~~~a~~i~~~~~~~~~~i~lp~d~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~Ti 318 (415) T 16pk_A 239 MAYTFLKAQGYSIGKSKCEESKLEFARSLLKKAEDRKVQVILPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTI 318 (415) T ss_dssp HHHHHHHHHTCCCTTCCCCGGGHHHHHHHHHHHHHTTCEEECCSSEEEESSSSCCSSCEECSSSCCCTTCEEEEECHHHH T ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCEECCCCCCCCCCCEECCCCCCCCCCHHHCCCHHHH T ss_conf 99999998198556542315668999999988886492262662301134556555420023335578724320343555 Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHH Q ss_conf 67776405776799976625322743658899999999861114885899748046998998488768646875079989 Q gi|254780653|r 303 EYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFL 382 (400) Q Consensus 303 ~~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~~~~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L 382 (400) +.|+++|.+|+|||||||||+||.++|+.||.+|+++++++++++++|||||||||++|++++|+.++|+|||||||||| T Consensus 319 ~~~~~~i~~a~tI~wNGP~GvfE~~~F~~GT~~l~~aia~~~~~~~a~sivGGGdT~aai~~~g~~~~~~hvSTGGGA~L 398 (415) T 16pk_A 319 EKYVQTIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGTHEHGLMSIIGGGDSASAAELSGEAKRMSHVSTGGGASL 398 (415) T ss_dssp HHHHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHHHCCEEEECSHHHHHHHHHTTCTTTSSEECSCHHHHH T ss_pred HHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCCCCEEECCHHHHH T ss_conf 77899885478999978714543651528999999999984234899899848799999997398568827976889999 Q ss_pred HHHCCCCCHHHHHHCCC Q ss_conf 98748998689884079 Q gi|254780653|r 383 EWLEGKDLPGIVALSGH 399 (400) Q Consensus 383 ~~L~G~~LPgi~aL~~~ 399 (400) +||+|++||||+||++. T Consensus 399 ~~L~G~~LPgi~aL~~k 415 (415) T 16pk_A 399 ELLEGKTLPGVTVLDDK 415 (415) T ss_dssp HHHTTCCCHHHHTSCBC T ss_pred HHHCCCCCCHHHHHCCC T ss_conf 99879996346774069 No 5 >1ltk_A Phosphoglycerate kinase; PGK, glycolysis, glycerol, open conformation, ADP complex, selenomethionine, transferase; HET: AMP; 3.00A {Plasmodium falciparum} SCOP: c.86.1.1 Probab=100.00 E-value=0 Score=1007.67 Aligned_cols=397 Identities=39% Similarity=0.650 Sum_probs=379.2 Q ss_pred CCCCCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCC-EEEEEECCCCCCCCCCCCCCHHHHH Q ss_conf 988877101001599689998201671318577725899998898999998898-0999913778889847332247888 Q gi|254780653|r 1 MSRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKA-KVVIFSHLGRPQSKSDKDCSLFKVV 79 (400) Q Consensus 1 M~~~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~a-kvii~SH~GRPkg~~~~~~Sl~~v~ 79 (400) |.+..||+|+.|++||+||||||||||+++|+|+|++||++++|||++|+++|| ||||+||||||+|+.++++||+||+ T Consensus 11 m~~~~ti~d~~dl~gK~VlvRvD~NvPi~~g~I~Dd~RI~~~lpTI~~L~~~ga~kvil~SHlGRP~g~~~~~~SL~pva 90 (425) T 1ltk_A 11 LGNKLSISDLKDIKNKKVLVRVDFNVPIENGIIKDTNRITATLPTINHLKKEGASKIILISHCGRPDGLRNEKYTLKPVA 90 (425) T ss_dssp SSSCCBSSSCCCCTTCEEEEEECCCCCEETTEESCTHHHHHTHHHHHHHHTTCCSEEEEECCCSCCTTSCCGGGCSHHHH T ss_pred CCCCCEECCCCCCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHH T ss_conf 04676101022258998999942146523993897899999999999999879982999818889999889984569999 Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCC---------------HHHHHHHHCCCCCEEE Q ss_conf 8764310133545666310255665531364648982424303432100---------------0246653124364247 Q gi|254780653|r 80 SIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEERN---------------DPDFVRMLSRNGDFYI 144 (400) Q Consensus 80 ~~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n---------------~~~f~k~La~laDiyV 144 (400) ++|+++|+++|.|++||+|+.++++++.|++|+|+||||+|||+||+.| ++.|+|+||++||+|| T Consensus 91 ~~L~~~L~~~V~fv~d~~g~~~~~~i~~l~~g~I~LLENvRF~~eE~~n~~~~~~~~~~~~~~~~~~f~k~LA~laDvyV 170 (425) T 1ltk_A 91 ETLKGLLGEEVLFLNDCVGKEVEDKINAAKENSVILLENLRFHIEEEGKGVDANGNKVKANKEDVEKFQNDLTKLADVFI 170 (425) T ss_dssp HHHHHHHTSCCEECSCSSSHHHHHHHHSSCTTEEEECCCGGGSHHHHSEEECTTCCEEECCHHHHHHHHHHHHTSCSEEE T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCEEECCHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCEEE T ss_conf 99999878776113666672677775327988789860111020000256420010110112337999999864167876 Q ss_pred ECCHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHH Q ss_conf 54404401137633302332100033255657776533101667871899960780255788998773068888620578 Q gi|254780653|r 145 NDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMA 224 (400) Q Consensus 145 nDAF~~aHR~haS~~gi~~~lps~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~la 224 (400) |||||||||+|||++||+.+ |+|+|+|||+|+++|++++++|+||+++||||||++|||++|++|++++|++++||+|| T Consensus 171 NDAF~~aHR~haS~~gi~~~-~~~aG~L~ekEi~~L~k~l~~~~~P~vaIlGGaKvsdKi~~i~~l~~k~D~iiigG~~a 249 (425) T 1ltk_A 171 NDAFGTAHRAHSSMVGVKLN-VKASGFLMKKELEYFSKALENPQRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGGMA 249 (425) T ss_dssp EECTTSCSSCCHHHHCCCCS-EEEECHHHHHHHHHHHHHHTSCCSSEEEEEECSCSGGGHHHHHHHHTTCSEEEEESSHH T ss_pred ECCCCCCCCCCCCEECCCCC-CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCEEEECCHHH T ss_conf 14554345566532210001-35430469999999999984878884699837741207999998886247289642799 Q ss_pred HHHHH-HHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCC-CCCCCCEECCCCCCCCCCCHHH Q ss_conf 99999-830143433331000013568899875302455430354113432323333-1025321201334576520035 Q gi|254780653|r 225 NSFLV-AQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPT-QVVSAQSVPLDSIILDVGFKTV 302 (400) Q Consensus 225 ntfL~-A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~-~~~~~~~i~~~~~i~DIGp~Ti 302 (400) ||||+ ++|++||+|++|+++.+.++++++++++++++|++|+|++|+.+++...+. .....++||++|+++||||+|+ T Consensus 250 ntfL~a~~g~~ig~s~~e~~~~~~a~~i~~~ak~~~~~i~lP~d~~~~~~~~~~~~~~~~~~~~~i~~~~~ilDIG~~Ti 329 (425) T 1ltk_A 250 YTFKKVLNNMKIGTSLFDEAGSKIVGEIMEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWMGLDAGPKSI 329 (425) T ss_dssp HHHHHHHHCCCCTTSCCCTTGGGTHHHHHHHHHHTTCEEECCSEEEEESSSSSSSCEEEEETTTCCCTTCEEEEECHHHH T ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCEECCCCCCCCCCEEEECCHHHH T ss_conf 99999703886685332466779999999999862995345676376204567778307614557765333441362778 Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHH Q ss_conf 67776405776799976625322743658899999999861114885899748046998998488768646875079989 Q gi|254780653|r 303 EYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFL 382 (400) Q Consensus 303 ~~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~~~~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L 382 (400) +.|+++|++|+|||||||||+||+++|+.||.++++++++.++ +++|||||||||++|++++|+.++|+|||||||||| T Consensus 330 ~~~~~~I~~a~tI~wNGP~GvfE~~~F~~GT~~i~~~i~~~t~-~~a~sivGGGdT~aai~~~g~~~~~shvSTGGGA~L 408 (425) T 1ltk_A 330 ENYKDVILTSKTVIWNGPQGVFEMPNFAKGSIECLNLVVEVTK-KGAITIVGGGDTASLVEQQNKKNEISHVSTGGGASL 408 (425) T ss_dssp HHHHHHHHTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHH-TTCEEEECCSTTHHHHHHHTCGGGSSEECCCSHHHH T ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECHHHHHHHHHCCCCCCCEEEECCHHHHH T ss_conf 9999985628889997986654576054899999999998841-799799948799999997498569838974879999 Q ss_pred HHHCCCCCHHHHHHCCC Q ss_conf 98748998689884079 Q gi|254780653|r 383 EWLEGKDLPGIVALSGH 399 (400) Q Consensus 383 ~~L~G~~LPgi~aL~~~ 399 (400) +||+|++||||+||++. T Consensus 409 ~~L~G~~LPgi~aL~~k 425 (425) T 1ltk_A 409 ELLEGKELPGVLALSNK 425 (425) T ss_dssp HHHTTCCCHHHHTSCC- T ss_pred HHHCCCCCCHHHHHCCC T ss_conf 99879997436774269 No 6 >2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia, transferase, phosphoprotein, glycolysis, nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens} PDB: 2wzc_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A* 2wzd_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A* 2p9q_A* 2paa_A* Probab=100.00 E-value=0 Score=1004.54 Aligned_cols=395 Identities=39% Similarity=0.638 Sum_probs=376.5 Q ss_pred CCCCCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCE-EEEEECCCCCCC-CCCCCCCHHHH Q ss_conf 9888771010015996899982016713185777258999988989999988980-999913778889-84733224788 Q gi|254780653|r 1 MSRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAK-VVIFSHLGRPQS-KSDKDCSLFKV 78 (400) Q Consensus 1 M~~~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~ak-vii~SH~GRPkg-~~~~~~Sl~~v 78 (400) |.+..||+|+ |++||+||||||||||+++|+|+||+||++++|||++|+++||| |||+||||||+| ++++++||+|| T Consensus 2 ~~~~ltl~d~-d~~gK~VlvRvD~NvPi~~g~I~Dd~RI~~~lpTI~~l~~~gak~Vil~SH~GRP~g~~~~~~~SL~~v 80 (416) T 2wzb_A 2 LSNKLTLDKL-DVKGKRVVMRVDFNVPMKNNQITNNQRIKAAVPSIKFCLDNGAKSVVLMSHLGRPDGVPMPDKYSLEPV 80 (416) T ss_dssp CTTBCBGGGC-CCTTCEEEEECCCCCCEETTEESCCHHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCCHHHHCSHHH T ss_pred CCCCCCHHHC-CCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHH T ss_conf 8667750211-768998999950466775991897799999999999999879998999707889999867865788999 Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCHH---------------HHHHHHCCCCCEE Q ss_conf 8876431013354566631025566553136464898242430343210002---------------4665312436424 Q gi|254780653|r 79 VSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEERNDP---------------DFVRMLSRNGDFY 143 (400) Q Consensus 79 ~~~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n~~---------------~f~k~La~laDiy 143 (400) +++|+++|+++|.|++|++|+.+++++++|++|+|+||||+|||+||+.|++ .|+++||++||+| T Consensus 81 a~~L~~~L~~~V~fv~d~~g~~~~~~i~~l~~geI~LLENvRF~~eE~~n~~~~~~~~~~~e~~~~~~fa~~LA~laDvy 160 (416) T 2wzb_A 81 AVELKSLLGKDVLFLKDCVGPEVEKACANPAAGSVILLENLRFHVEEEGKGKDASGNKVKAEPAKIEAFRASLSKLGDVY 160 (416) T ss_dssp HHHHHHHHTSCCEECSCSSSHHHHHHHHSCCTTEEEECCCGGGSHHHHTCC----------CHHHHHHHHHHHHHTCSEE T ss_pred HHHHHHHHCCCEEECCCCCHHHHHHHHHCCCCCCEEEHHHHHHCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEE T ss_conf 99999976897076475335888887641366718874433305210024644100014333677899999986325799 Q ss_pred EECCHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHH Q ss_conf 75440440113763330233210003325565777653310166787189996078025578899877306888862057 Q gi|254780653|r 144 INDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGM 223 (400) Q Consensus 144 VnDAF~~aHR~haS~~gi~~~lps~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~l 223 (400) ||||||||||+|||++||+ +.|+|+|+|||+|+++|++++++|+||+++|+||||++|||++|++|++++|++++||+| T Consensus 161 VNDAF~~aHR~haS~vgi~-~~~~~aG~l~ekEl~~L~~~l~~~~rP~vaIlGGaKisdKi~vi~~Ll~k~d~iiigG~~ 239 (416) T 2wzb_A 161 VNDAFGTAHRAHSSMVGVN-LPQKAGGFLMKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGM 239 (416) T ss_dssp EECCGGGTTCCCHHHHCCC-CSCEEECHHHHHHHHHHHHHHHSCCSSEEEEECSSCHHHHGGGHHHHTTTCSEEEECGGG T ss_pred EECCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCHH T ss_conf 6245221255554102504-640001789999999999998387888479984376222899999998632838966099 Q ss_pred HHHHHHH-HCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCC-CCCCCEECCCCCCCCCCCHH Q ss_conf 8999998-301434333310000135688998753024554303541134323233331-02532120133457652003 Q gi|254780653|r 224 ANSFLVA-QGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQ-VVSAQSVPLDSIILDVGFKT 301 (400) Q Consensus 224 antfL~A-~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~~-~~~~~~i~~~~~i~DIGp~T 301 (400) |||||+| +|++||+|++|+++.+.+++++.++++++++|++|+|++|+..++...+.. ....+++|++|+++||||+| T Consensus 240 antfl~a~~G~~iG~s~~e~~~~~~~~~i~~~a~~~~~ki~lP~D~~v~~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~T 319 (416) T 2wzb_A 240 AFTFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPES 319 (416) T ss_dssp HHHHHHHHHCCCCTTSCCCHHHHTTHHHHHHHHHHTTCEEECCCEEEEESSSSTTCCEEEEETTTCCCTTCEEEEECHHH T ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEECCCCCCCCCEEEECCCCCCCCCCCCCCHHH T ss_conf 99999996498557654105667999999999987298250034540110346676630662013214786001356377 Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHH Q ss_conf 56777640577679997662532274365889999999986111488589974804699899848876864687507998 Q gi|254780653|r 302 VEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAF 381 (400) Q Consensus 302 i~~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~~~~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~ 381 (400) ++.|+++|.+|+|||||||||+||+++|+.||.+++++++++++ +++|||||||||++|++++|+.++|+||||||||| T Consensus 320 i~~~~~~I~~a~tI~wNGP~GvfE~~~F~~GT~~l~~~i~~~~~-~~a~sivGGGdT~aai~~~g~~~~~~hvSTGGGA~ 398 (416) T 2wzb_A 320 SKKYAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATS-RGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGAS 398 (416) T ss_dssp HHHHHHHHHHCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHH-TTCEEEEESTTHHHHHHHTTCTTSSSEEESCSHHH T ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEECHHHHHHHHHCCCCCCCCEEECCHHHH T ss_conf 89999987158889996785555576153899999999997404-89989993779999999739867998584778999 Q ss_pred HHHHCCCCCHHHHHHCC Q ss_conf 99874899868988407 Q gi|254780653|r 382 LEWLEGKDLPGIVALSG 398 (400) Q Consensus 382 L~~L~G~~LPgi~aL~~ 398 (400) |+||+|++||||+||++ T Consensus 399 L~~L~G~~LPgi~aL~~ 415 (416) T 2wzb_A 399 LELLEGKVLPGVDALSN 415 (416) T ss_dssp HHHHHTCCCHHHHTSCB T ss_pred HHHHCCCCCCCEEHHCC T ss_conf 99987999652020035 No 7 >1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A {Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A* Probab=100.00 E-value=0 Score=1003.44 Aligned_cols=396 Identities=36% Similarity=0.608 Sum_probs=378.0 Q ss_pred CCCCCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCE-EEEEECCCCCCCCCCCCCCHHHHH Q ss_conf 9888771010015996899982016713185777258999988989999988980-999913778889847332247888 Q gi|254780653|r 1 MSRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAK-VVIFSHLGRPQSKSDKDCSLFKVV 79 (400) Q Consensus 1 M~~~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~ak-vii~SH~GRPkg~~~~~~Sl~~v~ 79 (400) |..-.||+|+ |++||+||||||||||+++|+|+|++||++++|||++|+++||| |||+||||||+|+.++++||+||+ T Consensus 2 ~~~klti~d~-d~~gK~VlvRvD~NvPi~~g~I~Dd~RI~~~lpTI~~L~~~gak~VIL~SHlGRP~g~~~~~~SL~pva 80 (415) T 1qpg_A 2 LSSKLSVQDL-DLKDKRVFIRVDFNVPLDGKKITSNQRIVAALPTIKYVLEHHPRYVVLASHLGQPNGERNEKYSLAPVA 80 (415) T ss_dssp TTSBCBGGGC-CCTTCEEEEECCCCCCBSSSSBSCCHHHHHHHHHHHHHHTTCCSEEEEECCCSCCCSSCCGGGCSHHHH T ss_pred CCCCCCHHHC-CCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHH T ss_conf 8667853553-868998999952666863998896889999999999999879988999616889999879876839999 Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCC--------------CCHHHHHHHHCCCCCEEEE Q ss_conf 87643101335456663102556655313646489824243034321--------------0002466531243642475 Q gi|254780653|r 80 SIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEE--------------RNDPDFVRMLSRNGDFYIN 145 (400) Q Consensus 80 ~~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~--------------~n~~~f~k~La~laDiyVn 145 (400) ++|+++|+++|.|++||+|+.+++.+..+++|+|+||||+|||+||+ +|+++|+|+||++||+||| T Consensus 81 ~~L~~~l~~~V~f~~d~~g~~~~~~i~~~~~G~IlLLENvRF~~~E~~~~~~~~~~~~~~~~n~~~fak~LA~laDiyVN 160 (415) T 1qpg_A 81 KELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENLRYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADVYIN 160 (415) T ss_dssp HHHHHHHTSCCEEESCSSSHHHHHHHHTCCTTEEEEECCGGGSHHHHTEEEETTEEEECCHHHHHHHHHHHHHTCSEEEE T ss_pred HHHHHHHCCCEEECCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEC T ss_conf 99999878974970676664767678747877189842011041100156431233211134289999998642447430 Q ss_pred CCHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHH Q ss_conf 44044011376333023321000332556577765331016678718999607802557889987730688886205789 Q gi|254780653|r 146 DAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMAN 225 (400) Q Consensus 146 DAF~~aHR~haS~~gi~~~lps~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lan 225 (400) ||||||||+|||++|++ ++|+|||+|||+|+++|++++++|+||+++||||||+||||++|++|++++|+|++||+||| T Consensus 161 DAF~~aHR~haS~~g~~-~~~s~aG~lmekEl~~L~~~l~~p~rP~~aIlGGaKisdKi~~l~~l~~k~D~iiigG~man 239 (415) T 1qpg_A 161 DAFGTAHRAHSSMVGFD-LPQRAAGFLLEKELKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAF 239 (415) T ss_dssp CCGGGTTSCCHHHHCCC-CSCEEECHHHHHHHHHHHHHHSSCCSSEEEEECSSCSGGGHHHHHHHTTTCSEEEECGGGHH T ss_pred CCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCCEEEECCHHHH T ss_conf 53221352445223445-78340138899999999999818899869997257353589999988753011563528999 Q ss_pred HHHH-HHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCC-CCCCCEECCCCCCCCCCCHHHH Q ss_conf 9999-8301434333310000135688998753024554303541134323233331-0253212013345765200356 Q gi|254780653|r 226 SFLV-AQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQ-VVSAQSVPLDSIILDVGFKTVE 303 (400) Q Consensus 226 tfL~-A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~~-~~~~~~i~~~~~i~DIGp~Ti~ 303 (400) |||+ ++|++||+|++|++..+.++++++++++++++|++|+|++|+.+++...+.+ ..+.++||++|+++||||+|++ T Consensus 240 tflka~~g~~ig~s~~e~~~~~~~~~i~~~a~~~~~~i~lP~D~~v~~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~Ti~ 319 (415) T 1qpg_A 240 TFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRK 319 (415) T ss_dssp HHHHHHSCCCCCSCCCCHHHHHHHHHHHHHHHHHTCEEECCSEEEEESSSSSSCCCCEEETTTCCCTTCEEEEECHHHHH T ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHH T ss_conf 99875124626730035565679999999999749978732567974144555672263551357876622443534399 Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHH Q ss_conf 77764057767999766253227436588999999998611148858997480469989984887686468750799899 Q gi|254780653|r 304 YIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLE 383 (400) Q Consensus 304 ~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~~~~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~ 383 (400) .|+++|.+|+|||||||||+||+++|+.||.+|++++++.++. ++|||||||||++|++++|+.++|+||||||||+|+ T Consensus 320 ~~~~~I~~aktI~wNGP~GvfE~~~F~~GT~~l~~~ia~~~~~-~~~sivGGGdt~~ai~~~g~~~~~shvSTGGGA~L~ 398 (415) T 1qpg_A 320 LFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSAA-GNTVIIGGGDTATVAKKYGVTDKISHVSTGGGASLE 398 (415) T ss_dssp HHHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHH-TCEEEECCHHHHHHHHHTTCGGGSSEECCCTHHHHH T ss_pred HHHHHHHHHCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCC-CCEEEEECHHHHHHHHHCCCCCCCCEEECCHHHHHH T ss_conf 9999988537789967754645652516899999999971057-984999578999999975986787169467899999 Q ss_pred HHCCCCCHHHHHHCCC Q ss_conf 8748998689884079 Q gi|254780653|r 384 WLEGKDLPGIVALSGH 399 (400) Q Consensus 384 ~L~G~~LPgi~aL~~~ 399 (400) ||+|++||||+||++. T Consensus 399 ~L~G~~LPgi~aL~~~ 414 (415) T 1qpg_A 399 LLEGKELPGVAFLSEK 414 (415) T ss_dssp HHTSCCCHHHHTSCBC T ss_pred HHCCCCCCHHHHHHHC T ss_conf 9879997489897508 No 8 >2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000, riken structural genomics/proteomics initiative, RSGI, NPPSFA; HET: 3PG; 2.10A {Pyrococcus horikoshii OT3} Probab=100.00 E-value=0 Score=998.70 Aligned_cols=388 Identities=30% Similarity=0.494 Sum_probs=365.1 Q ss_pred CCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 87710100159968999820167131857772589999889899999889809999137788898473322478888764 Q gi|254780653|r 4 LRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIAE 83 (400) Q Consensus 4 ~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l~ 83 (400) |.||+|+ |++|||||||||||||+++|+|+|++||++++|||+||+++||||||+||||||+++ +++||+||+++|+ T Consensus 1 m~tl~d~-dl~gK~VlvRvD~NVPi~~g~I~dd~RI~~~lpTI~~ll~~gakvvl~SHlGRP~~~--~~~sl~~~a~~L~ 77 (410) T 2cun_A 1 MFRLEDF-NFHNKTVFLRVDLNSPMKDGKIISDARFKAVLPTIRYLIESGAKVVIGTHQGKPYSE--DYTTTEEHARVLS 77 (410) T ss_dssp CCBGGGS-CCTTCEEEEECCCCCCEETTEECCCHHHHHTHHHHHHHHHTTCEEEEECCCSCTTCT--TCCCSHHHHHHHH T ss_pred CCCCCCC-CCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC--CCCCHHHHHHHHH T ss_conf 9861026-878999999935777512996887789999999999999889989998568888998--7675578999999 Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCC-------HHHHHHHHCCCCCEEEECCHHHHCCCCC Q ss_conf 310133545666310255665531364648982424303432100-------0246653124364247544044011376 Q gi|254780653|r 84 SILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEERN-------DPDFVRMLSRNGDFYINDAFSVSHRAHA 156 (400) Q Consensus 84 ~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n-------~~~f~k~La~laDiyVnDAF~~aHR~ha 156 (400) ++|+++|.|++|++++.++++++++++|+|+||||+|||+||++| +++|+|+||++||+|||||||||||+|| T Consensus 78 ~~L~~~V~f~~d~~g~~~~~~i~~l~~g~i~LLENvRF~~~E~~n~~~e~~~~~~fak~La~l~DiyVNDAFg~sHR~ha 157 (410) T 2cun_A 78 ELLDQHVEYIEDIFGRYAREKIKELKSGEVAILENLRFSAEEVKNKPIEECEKTFLVKKLSKVIDYVVNDAFATAHRSQP 157 (410) T ss_dssp HHHTSCEEECSCSSSHHHHHHHHTCCTTCEEECSCGGGBTTTTSCCCHHHHTTSHHHHHHHTTCSEEEECCGGGTTCCCH T ss_pred HHHCCCEEECCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEECCHHHHHHCCC T ss_conf 99689525323444678899987178787898605322532013654023406999999864288998354257660563 Q ss_pred CEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHH--CCCEEEECHHHHHHHHHHHCCC Q ss_conf 33302332100033255657776533101667871899960780255788998773--0688886205789999983014 Q gi|254780653|r 157 SITGLSHLLPSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVK--KVDKLVIGGGMANSFLVAQGMG 234 (400) Q Consensus 157 S~~gi~~~lps~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~--k~D~iiigG~lantfL~A~G~~ 234 (400) |++|+|+++|||+|++||+|+++|++++++|+||+++||||||+||||++|++|++ ++|+|++||+||||||+|+|++ T Consensus 158 S~~gi~~~lps~aG~l~ekEl~~L~~~l~~p~~P~vaIlGGaKisdKi~vl~~Ll~~~k~D~iiiGG~mantfl~a~G~~ 237 (410) T 2cun_A 158 SLVGFARIKPMIMGFLMEKEIEALMRAYYSKDSPKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANVFTLAKGFD 237 (410) T ss_dssp HHHTTTTTSCEEECHHHHHHHHHHHHHHTCCCSCEEEEECSSCHHHHHHHHHHHHHTTSCSEEEECHHHHHHHHHHHTCC T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCC T ss_conf 22464334620116999999999876541689984999607756169999999850135748996351355688735813 Q ss_pred CCCCCCCCCCCHHHH----HHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHC Q ss_conf 343333100001356----8899875302455430354113432323333102532120133457652003567776405 Q gi|254780653|r 235 VGRSLCQRDFSDNVH----QIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQVIA 310 (400) Q Consensus 235 IG~Sl~e~~~~~~ak----~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~Ti~~~~~~I~ 310 (400) ||+|++|+.+.+.+. .+.+.++++.++|.+|+|++|..+........+...+++|++|+++||||+|++.|+++|+ T Consensus 238 IG~Sl~E~~~~~~~~~~~~~~~~~~~~~~~~i~~p~d~~~~~~~~~~~~~~~~~~~~i~~~~~ilDIGp~Ti~~~~~~I~ 317 (410) T 2cun_A 238 LGRKNVEFMKKKGLLDYVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLHQYQIMDIGKRTAEKYREILM 317 (410) T ss_dssp CCHHHHHHHHTTTGGGGHHHHHHHHHHHGGGEECCSEEEEEETTEEEEEESSSGGGGGGGTSCEEEECHHHHHHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEECCEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHC T ss_conf 15643134444217899999998621447733245122144444555533002444676666212788789999899864 Q ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCC Q ss_conf 77679997662532274365889999999986111488589974804699899848876864687507998998748998 Q gi|254780653|r 311 QARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDL 390 (400) Q Consensus 311 ~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~~~~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~~L~G~~L 390 (400) +|+|||||||||+||+++|+.||.++++++++ ++++||||||||++|++++|+.+ |+||||||||||+||||++| T Consensus 318 ~aktI~WNGP~GvfE~~~F~~GT~~i~~aia~----~~a~sivGGGdT~aai~~~g~~~-~shvSTGGGA~Le~LeG~~L 392 (410) T 2cun_A 318 KARIIVANGPMGVFEREEFAIGTVEVFKAIAD----SPAFSVLGGGHSIASIQKYGITG-ITHISTGGGAMLSFFAGEEL 392 (410) T ss_dssp TCSEEEEESCSSCTTSGGGCHHHHHHHHHHHH----SSSEEEEECGGGGGGGGGSCCCC-CSEECSCSHHHHHHHTTCCC T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHH----CCCEEEECCHHHHHHHHHCCCCC-CCEEECCHHHHHHHHCCCCC T ss_conf 79879996885556564165999999999970----89989996859999999759988-80595677999999879986 Q ss_pred HHHHHHCCC Q ss_conf 689884079 Q gi|254780653|r 391 PGIVALSGH 399 (400) Q Consensus 391 Pgi~aL~~~ 399 (400) |||+||.++ T Consensus 393 Pgi~aL~~~ 401 (410) T 2cun_A 393 PVLRALQIS 401 (410) T ss_dssp HHHHHHHHH T ss_pred HHHHHHHHH T ss_conf 279999999 No 9 >1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A {Escherichia coli} Probab=100.00 E-value=0 Score=985.12 Aligned_cols=382 Identities=40% Similarity=0.682 Sum_probs=366.1 Q ss_pred CCCCCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-CCCCCCCCCHHHHHH Q ss_conf 8887710100159968999820167131857772589999889899999889809999137788-898473322478888 Q gi|254780653|r 2 SRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRP-QSKSDKDCSLFKVVS 80 (400) Q Consensus 2 ~~~~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRP-kg~~~~~~Sl~~v~~ 80 (400) |+++||+|+ |++||+||||+|||||+++|+|+|++||++++|||++|+++|+|+||+|||||| ++++++.+||+||++ T Consensus 1 M~~~~l~d~-d~~gK~VlvRvD~NvPi~~g~I~Dd~RI~~~lpTI~~ll~~gakvvl~SH~GRP~~~~~~~~~Sl~~v~~ 79 (387) T 1zmr_A 1 MSVIKMTDL-DLAGKRVFIRADLNVPVKDGKVTSDARIRASLPTIELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVN 79 (387) T ss_dssp -CCCBGGGS-CCTTCEEEEECCCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSSCBTTBCCGGGCSHHHHH T ss_pred CCCCCCCCC-CCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHCHHHHHH T ss_conf 997615444-7589999999505777549918876899999999999997899899983688999998480015388999 Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCHHHHHHHHCCCCCEEEECCHHHHCCCCCCEEE Q ss_conf 76431013354566631025566553136464898242430343210002466531243642475440440113763330 Q gi|254780653|r 81 IAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITG 160 (400) Q Consensus 81 ~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n~~~f~k~La~laDiyVnDAF~~aHR~haS~~g 160 (400) +|+++|+++|.|++|+++.. ++++|+|+||||+|||+||++|++.|+++||++||+|||||||||||+|||++| T Consensus 80 ~L~~~l~~~v~~~~~~~~~~------~~~~g~i~LLENvRf~~~E~~n~~~f~~~LA~l~DiyVNDAF~~aHR~haS~~g 153 (387) T 1zmr_A 80 YLKDKLSNPVRLVKDYLDGV------DVAEGELVVLENVRFNKGEKKDDETLSKKYAALCDVFVMDAFGTAHRAQASTHG 153 (387) T ss_dssp HHHHHCSSCEEEESCCTTCC------CCCTTCEEEECCGGGSTTTTTTCHHHHHHHHHTCSEEEECCGGGTTSCCCCCCC T ss_pred HHHHHHCCCCCCCCCCCCCH------HCCCCCEEEHHHCCCCCCCCCCCHHHHHHHCCCCCEEECCCHHHHHCCCCHHHH T ss_conf 99998646541232246500------058773986442076755433567677641133547741414444124500231 Q ss_pred CCCCC-CCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCC Q ss_conf 23321-00033255657776533101667871899960780255788998773068888620578999998301434333 Q gi|254780653|r 161 LSHLL-PSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSL 239 (400) Q Consensus 161 i~~~l-ps~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~Sl 239 (400) +|+|+ |||+|++||+|+++|++++++|+||+++||||||++|||++|++|++++|+|++||+||||||+|+|++||+|+ T Consensus 154 i~~~~~~s~aG~l~ekEl~~L~~~l~~p~~P~~aIlGGaKisdKi~vl~~l~~k~D~iiigG~mantFL~A~G~~IG~sl 233 (387) T 1zmr_A 154 IGKFADVACAGPLLAAELDALGKALKEPARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIANTFIAAQGHDVGKSL 233 (387) T ss_dssp HHHHSSEEEECHHHHHHHHHHHHHHSSCSSSEEEEEEESCTTTTHHHHHHHHTTCSEEEEEEHHHHHHHHHTTCCCTTCS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCEEEEECHHHHHHHHHHCCCCCCCCC T ss_conf 68888888899999999999999983889986999506728789999999985105999870999999997598778776 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC Q ss_conf 31000013568899875302455430354113432323333102532120133457652003567776405776799976 Q gi|254780653|r 240 CQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNG 319 (400) Q Consensus 240 ~e~~~~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~Ti~~~~~~I~~AktI~WNG 319 (400) +|+++.+.++.+. ++++|++|+|++|+.++....+.++++.+++|++|+++||||+|++.|+++|++|+|||||| T Consensus 234 ~E~~~~~~~~~~~-----~~~~i~lp~D~~~~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~Ti~~~~~~i~~akti~wNG 308 (387) T 1zmr_A 234 YEADLVDEAKRLL-----TTCNIPVPSDVRVATEFSETAPATLKSVNDVKADEQILDIGDASAQELAEILKNAKTILWNG 308 (387) T ss_dssp CCGGGHHHHHHHH-----TTSCCCCCSEEEEESSSSSSCCCEEEEGGGCCTTCEEEEECHHHHHHHHHHHHHCSEEEEES T ss_pred CCCCHHHHHHHHH-----HCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHCEEEEEC T ss_conf 4302599999998-----27996666443630223688871785165679997177323033677899986416688815 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCHHHHHHCCC Q ss_conf 62532274365889999999986111488589974804699899848876864687507998998748998689884079 Q gi|254780653|r 320 PLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALSGH 399 (400) Q Consensus 320 P~GvfE~~~F~~GT~~l~~~ia~~~~~~~~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~~L~G~~LPgi~aL~~~ 399 (400) |||+||+++|+.||.+|++++++ ++++||||||||++|++++|+.++|+||||||||+|+||+|++||||+||.+. T Consensus 309 P~GvfE~~~F~~GT~~l~~ai~~----~~~~sivGGGdt~aai~~~g~~~~~shvSTGGGA~Le~L~g~~LPgi~aL~~~ 384 (387) T 1zmr_A 309 PVGVFEFPNFRKGTEIVANAIAD----SEAFSIAGGGDTLAAIDLFGIADKISYISTGGGAFLEFVEGKVLPAVAMLEER 384 (387) T ss_dssp CSBCTTSGGGCHHHHHHHHHHHH----SSSEEEECSHHHHHHHHHHTCGGGSSEECCCTHHHHHHHTTCCCHHHHHHHHH T ss_pred CCCCCCCCCHHHHHHHHHHHHHH----CCCEEEECCHHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCCHHHHHHHH T ss_conf 54444466253899999999986----89989996879999999829866870897878999999879996459999874 No 10 >1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycolysis, mutant, permutation, permuted sequence, protein folding; 2.30A {Saccharomyces cerevisiae} SCOP: c.86.1.1 Probab=100.00 E-value=0 Score=806.22 Aligned_cols=327 Identities=36% Similarity=0.596 Sum_probs=312.5 Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHCCCCC--------------CCHHHHHHHH Q ss_conf 33224788887643101335456663102556655313646489824243034321--------------0002466531 Q gi|254780653|r 71 KDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEE--------------RNDPDFVRML 136 (400) Q Consensus 71 ~~~Sl~~v~~~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~--------------~n~~~f~k~L 136 (400) .+|||+||+++|+++|+++|.|++||+|+.+++++++|++|+|+||||+|||+||+ +|+++|+++| T Consensus 2 ~K~SL~pva~~Ls~lL~~~V~fi~d~~g~~a~~~i~~l~~GeIlLLENvRF~~eE~~~~~~e~~~~~~~~~n~~~fak~L 81 (416) T 1fw8_A 2 SKYSLAPVAKELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENLRYHIEEEGSRKVDGQKVKASKEDVQKFRHEL 81 (416) T ss_dssp CTTCSHHHHHHHHHHHTSCEEECSCSSSHHHHHHHHTSCTTEEEECCCGGGSHHHHSEEEETTEEEECCHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHH T ss_conf 75166999999999978997878888888999999628999589986568781310465431122012211179999998 Q ss_pred CCCCCEEEECCHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCE Q ss_conf 24364247544044011376333023321000332556577765331016678718999607802557889987730688 Q gi|254780653|r 137 SRNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDK 216 (400) Q Consensus 137 a~laDiyVnDAF~~aHR~haS~~gi~~~lps~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~ 216 (400) |++||+|||||||||||+|||++||+ ++|+|||+|||+|+++|++++++|+||+++||||||++|||++|++|++++|+ T Consensus 82 A~laDiyVNDAFg~aHR~haS~vG~~-~~~s~aG~LmekEl~~L~k~l~~p~rP~vaIlGGaKvsdKI~vi~~Ll~kvD~ 160 (416) T 1fw8_A 82 SSLADVYINDAFGTAHRAHSSMVGFD-LPQRAAGFLLEKELKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDS 160 (416) T ss_dssp HTTCSEEEECCGGGTTSCCHHHHCCC-CSCEEECHHHHHHHHHHHHHHHSCCSSEEEEEECSCSTTTHHHHHHHHTTCSE T ss_pred HHHCCEEEECCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCE T ss_conf 75488998656210131332010224-67344517699999999999718899818993044131579999999976213 Q ss_pred EEECHHHHHHHHH-HHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCC-CCCCCCCEECCCCCC Q ss_conf 8862057899999-83014343333100001356889987530245543035411343232333-310253212013345 Q gi|254780653|r 217 LVIGGGMANSFLV-AQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIP-TQVVSAQSVPLDSII 294 (400) Q Consensus 217 iiigG~lantfL~-A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~-~~~~~~~~i~~~~~i 294 (400) |++||+||||||+ ++|++||+|++|+++.+.++++++++++++++|++|+|++|+.+++...+ ..+.+.++||++|++ T Consensus 161 IiigG~mantFLk~a~g~~IG~sl~e~~~~~~a~~il~~a~~~~~~I~lP~D~~v~~~~~~~~~~~~~~~~~~I~~~~~i 240 (416) T 1fw8_A 161 IIIGGGMAFTFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQG 240 (416) T ss_dssp EEEEGGGHHHHHHHHSCCCCCSCCCCHHHHHHHHHHHHHHHHHTCEEECCSEEEEESSSSTTCCEEEEETTTCCCTTCEE T ss_pred EEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEECCCCCCCCCEEECCCCCCCCCCCC T ss_conf 55261889999875012607730565566768999999999759978741678983244565672275563344678621 Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCCCCEE Q ss_conf 76520035677764057767999766253227436588999999998611148858997480469989984887686468 Q gi|254780653|r 295 LDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAGISNEFTYV 374 (400) Q Consensus 295 ~DIGp~Ti~~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~~~~~~sivGGGdT~aai~~~g~~~~~~hv 374 (400) +||||+|++.|+++|++|+|||||||||+||+++|+.||.+++++|++.++ .+++||||||||++|++++|+.++|+|| T Consensus 241 ~DIG~~Ti~~~~~~I~~AkTI~WNGPmGvfE~~~F~~GT~~i~~aia~s~~-~~~~sIvGGGdT~aai~~~gl~~~~shV 319 (416) T 1fw8_A 241 LDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSA-AGNTVIIGGGDTATVAKKYGVTDKISHV 319 (416) T ss_dssp EEECHHHHHHHHHHHHHCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHH-TTCEEEECTTHHHHHHHHTTCGGGSSEE T ss_pred CCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCC-CCCEEEEECHHHHHHHHHCCCCCCCCEE T ss_conf 344644699999999857988997775454575241689999999997205-7983999677999999975986788169 Q ss_pred ECCHHHHHHHHCCCCCHHHHHHCCC Q ss_conf 7507998998748998689884079 Q gi|254780653|r 375 STAGGAFLEWLEGKDLPGIVALSGH 399 (400) Q Consensus 375 STgGGA~L~~L~G~~LPgi~aL~~~ 399 (400) ||||||+|+||+|++||||+||++. T Consensus 320 STGGGA~Le~LeGk~LPgIeaL~~~ 344 (416) T 1fw8_A 320 STGGGASLELLEGKELPGVAFLSEK 344 (416) T ss_dssp CSCSHHHHHHHTTCCCHHHHTSCSS T ss_pred ECCHHHHHHHHCCCCCCHHHHHHHH T ss_conf 4777999999879997389999863 No 11 >1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycolysis, mutant, permutation, permuted sequence, protein folding; 2.30A {Saccharomyces cerevisiae} SCOP: c.86.1.1 Probab=99.68 E-value=8e-17 Score=127.54 Aligned_cols=64 Identities=39% Similarity=0.682 Sum_probs=59.8 Q ss_pred CCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCE-EEEEECCCCCCCCC Q ss_conf 771010015996899982016713185777258999988989999988980-99991377888984 Q gi|254780653|r 5 RTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAK-VVIFSHLGRPQSKS 69 (400) Q Consensus 5 ~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~ak-vii~SH~GRPkg~~ 69 (400) -+++|+ |+++|+|++|+|||||++..+|++..||.+++|||+|.++++++ ||+.||+|||.|+. T Consensus 351 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (416) T 1fw8_A 351 LSVQDL-DLKDKRVFIRVDFNVPLDGKKITSNQRIVAALPTIKYVLEHHPRYVVLASHLGRPNGER 415 (416) T ss_dssp CBGGGS-CCTTCEEEEECCCCCCBSSSSBSCTHHHHHHHHHHHHHHHTCCSEEEEECCCSCCCSSC T ss_pred CCCCCH-HHCCCCEEEEEEECCCCCCCCCCCHHHHHHHCCHHHHHHHCCCCEEEEHHHCCCCCCCC T ss_conf 365702-20467437998727865712043067787523157999855982898686438998788 No 12 >1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A Probab=92.28 E-value=0.44 Score=26.01 Aligned_cols=311 Identities=14% Similarity=0.162 Sum_probs=153.3 Q ss_pred HHHHHHHHHHCCCEEEEE--ECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC-CEEECCH Q ss_conf 889899999889809999--1377888984733224788887643101335456663102556655313646-4898242 Q gi|254780653|r 42 VVPTILELVEKKAKVVIF--SHLGRPQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEG-GIILAEN 118 (400) Q Consensus 42 ~~pTI~~l~~~~akvii~--SH~GRPkg~~~~~~Sl~~v~~~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g-~ilLLEN 118 (400) ...+|+.+++.|..+.=+ ||-. .+.....-...+.+++.++++|...-|.-|++.+. ..++++ ++.|-++ T Consensus 16 ~~e~i~~li~aG~~v~RiN~SHgt-----~e~~~~~i~~ir~~~~~~~~~v~I~~Dl~GpkiRt--g~~~~~~~i~l~~G 88 (470) T 1e0t_A 16 SEEMLAKMLDAGMNVMRLNFSHGD-----YAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRT--MKLEGGNDVSLKAG 88 (470) T ss_dssp SHHHHHHHHHHTEEEEEEETTSSC-----HHHHHHHHHHHHHHHHHHTCCCEEEEECCCCCEEB--CCBGGGCCEEECTT T ss_pred CHHHHHHHHHCCCCEEEEECCCCC-----HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEE--EEECCCCEEEECCC T ss_conf 999999999879999999899999-----99999999999999997099817999689986479--87369975896389 Q ss_pred HHHC-------CCCC----CCHHHHHHHHCCCCCEEEECCHHH---HC----------------CCCCCEE--ECCCCCC Q ss_conf 4303-------4321----000246653124364247544044---01----------------1376333--0233210 Q gi|254780653|r 119 VRFY-------SEEE----RNDPDFVRMLSRNGDFYINDAFSV---SH----------------RAHASIT--GLSHLLP 166 (400) Q Consensus 119 ~Rf~-------~~E~----~n~~~f~k~La~laDiyVnDAF~~---aH----------------R~haS~~--gi~~~lp 166 (400) -++. .+.. -+.+++.+.+..--.+|++|.--. -- +++-++. +...-+| T Consensus 89 ~~v~l~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~I~idDG~i~l~V~~~~~~~i~~~v~~~G~l~~~Kgvnip~~~~~~~ 168 (470) T 1e0t_A 89 QTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALP 168 (470) T ss_dssp CEEEEESCTTCCBBTTEEEBSCTTHHHHCCTTCEEEETTTTEEEEEEEEETTEEEEEECSCEEECSSCEEECSSCCCCCC T ss_pred CEEEEECCCCCCCCCCEEEECCHHHHHHCCCCCEEEEECCEEEEEEEECCCCEEEEEEEECEEECCCCEEECCCCCCCCC T ss_conf 99999568876897778984408879756899889997786999997324888999996282962897164289755664 Q ss_pred C------------------CCCHHH---HHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHH--HHHHHHCCCEEEECHHH Q ss_conf 0------------------033255---657776533101667871899960780255788--99877306888862057 Q gi|254780653|r 167 S------------------YIGRAM---QKELSMLESCFSESKKPLVAIVGGSKVSTKITL--LINLVKKVDKLVIGGGM 223 (400) Q Consensus 167 s------------------~aG~l~---ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~--i~~L~~k~D~iiigG~l 223 (400) . +.+..| .+.+..+.+.+.....+.+-|+ |||+++-.+ |+..++.+|.|++.=|= T Consensus 169 ~ltekD~~~i~~~~~~~vd~i~lSfV~~~~dv~~~r~~l~~~~~~~~~ii--aKIE~~~al~nl~eI~~~sDgimiaRGD 246 (470) T 1e0t_A 169 ALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHII--SKIENQEGLNNFDEILEASDGIMVARGD 246 (470) T ss_dssp SSCHHHHHHHHHHHHHTCSEEEESSCCSHHHHHHHHHHHHTTTCTTCEEE--EEECSHHHHHTHHHHHHHSSEEEEEHHH T ss_pred CCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEE--EEECCHHHHHHHHHHHHHCCEEEEECCC T ss_conf 46387899886110159764410356866788888766776157663479--8852699998799999757578996566 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCC--CCCCCCC-EECCC--CCCCC-- Q ss_conf 89999983014343333100001356889987530245543035411343232333--3102532-12013--34576-- Q gi|254780653|r 224 ANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIP--TQVVSAQ-SVPLD--SIILD-- 296 (400) Q Consensus 224 antfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~--~~~~~~~-~i~~~--~~i~D-- 296 (400) .|.+++- +..-...+.++.++.+.+.++++-+.+.-+=. .+..| .++.++. .+-++ ...+- T Consensus 247 -------Lg~e~~~----e~vp~~Qk~Ii~~~~~~~kpvi~ATq~LeSM~-~~~~PTRAEv~Dv~nav~dGad~vmLs~E 314 (470) T 1e0t_A 247 -------LGVEIPV----EEVIFAQKMMIEKCIRARKVVITATMMLDSMI-KNPRPTDAEAGDVANAILDGTDAVMLSGE 314 (470) T ss_dssp -------HHHHSCH----HHHHHHHHHHHHHHHHHTCEEEEECC----------CCCHHHHHHHHHHHHHTCSEEEECCC T ss_pred -------CHHCCCH----HHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHH-CCCCCCCHHHHHHHHHHHHCCCEEEECCC T ss_conf -------0100898----88789999999999865998898167788763-18998634578899999816766877366 Q ss_pred -----CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC--EEEE-CCCHHHHHHHHCCCC Q ss_conf -----52003567776405776799976625322743658899999999861114885--8997-480469989984887 Q gi|254780653|r 297 -----VGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRI--ISIA-GGGDTITALAHAGIS 368 (400) Q Consensus 297 -----IGp~Ti~~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~~~~~--~siv-GGGdT~aai~~~g~~ 368 (400) ---++++....++.+++..+|.-.. .-+......-+.+++.+..+....-++ +.+. =-|-|+..+.++--. T Consensus 315 Ta~G~~P~~~v~~~~~i~~~aE~~~~~~~~-~~~~~~~~~~~~aia~aAv~lA~~~~AkaIvv~T~SG~tA~~vS~~RP~ 393 (470) T 1e0t_A 315 SAKGKYPLEAVSIMATICERTDRVMNSRLE-FNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPD 393 (470) T ss_dssp ------CHHHHHHHHHHHHHHHTTCCCCCC----------CHHHHHHHHHHHHHHTTCSBEEEECSSSHHHHHHHTTCCS T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCH-HCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCC T ss_conf 457757889999999999998631333210-0135667881077899999998740777799995971899999835979 Q ss_pred CCCCEE Q ss_conf 686468 Q gi|254780653|r 369 NEFTYV 374 (400) Q Consensus 369 ~~~~hv 374 (400) -.+--+ T Consensus 394 ~PIiav 399 (470) T 1e0t_A 394 ATILAL 399 (470) T ss_dssp SBEEEE T ss_pred CCEEEE T ss_conf 999998 No 13 >2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus} Probab=68.46 E-value=1.4 Score=22.80 Aligned_cols=312 Identities=13% Similarity=0.170 Sum_probs=153.4 Q ss_pred HHHHHHHHHHCCCEEEEE--ECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH-----HHHCCCCCEE Q ss_conf 889899999889809999--137788898473322478888764310133545666310255665-----5313646489 Q gi|254780653|r 42 VVPTILELVEKKAKVVIF--SHLGRPQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQS-----IASLSEGGII 114 (400) Q Consensus 42 ~~pTI~~l~~~~akvii~--SH~GRPkg~~~~~~Sl~~v~~~l~~~l~~~V~fi~d~~g~~~~~~-----i~~l~~g~il 114 (400) ...+|+.|+++|..+.=+ ||- -+ +.........+.+++.++++|...-|.-|++.+.. --.|+.|+.+ T Consensus 17 ~~e~l~~li~aG~nv~RlN~SHg-~~----e~h~~~i~~iR~~~~~~~~~vaIllDl~GpkIRtg~~~~~~i~L~~G~~v 91 (587) T 2e28_A 17 SVDKLVQLMEAGMNVARLNFSHG-DH----EEHGRRIANIREAAKRTGRTVAILLDTKGPEIRTHNMENGAIELKEGSKL 91 (587) T ss_dssp SHHHHHHHHHHTEEEEEEETTSS-CH----HHHHHHHHHHHHHHHHTTCCCEEEEECCCCCCBBCCCTTSCBCCCSSCEE T ss_pred CHHHHHHHHHCCCCEEEEECCCC-CH----HHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCEEEECCCCEE T ss_conf 99999999987999999989999-99----99999999999999970998079997999856886327982896589999 Q ss_pred ECCHHHHCCCCCC--------CHHHHHHHHCCCCCEEEECCHHHHC----CCC-CCEE---------------ECC---C Q ss_conf 8242430343210--------0024665312436424754404401----137-6333---------------023---3 Q gi|254780653|r 115 LAENVRFYSEEER--------NDPDFVRMLSRNGDFYINDAFSVSH----RAH-ASIT---------------GLS---H 163 (400) Q Consensus 115 LLEN~Rf~~~E~~--------n~~~f~k~La~laDiyVnDAF~~aH----R~h-aS~~---------------gi~---~ 163 (400) -| ..+|.. +.++|.+.+..--.+|+.|..-... ..+ ..+. -+| . T Consensus 92 ~l-----~~~~~~g~~~~i~v~y~~l~~~v~~Gd~IlidDG~i~l~v~~v~~~~~~i~~~V~~gG~L~~~KgVn~P~~~~ 166 (587) T 2e28_A 92 VI-----SMSEVLGTPEKISVTYPSLIDDVSVGAKILLDDGLISLEVNAVDKQAGEIVTTVLNGGVLKNKKGVNVPGVKV 166 (587) T ss_dssp EE-----ESSCCCCCSSEEEBSCTTSTTTCCTTCEEEETTTTEEEEEEEEETTTTEEEEECCSCCCBCSSCBEECTTSCC T ss_pred EE-----ECCCCCCCCCEEECCCHHHHHHCCCCCEEEEECCCEEEEEEEEECCCCEEEEEECCCEEECCCCEEECCCCCC T ss_conf 99-----5688689767897450887976679987999448369999997156538999973035986997165279867 Q ss_pred CCCC------------------CCCHH---HHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHH--HHHHHHCCCEEEEC Q ss_conf 2100------------------03325---5657776533101667871899960780255788--99877306888862 Q gi|254780653|r 164 LLPS------------------YIGRA---MQKELSMLESCFSESKKPLVAIVGGSKVSTKITL--LINLVKKVDKLVIG 220 (400) Q Consensus 164 ~lps------------------~aG~l---~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~--i~~L~~k~D~iiig 220 (400) -+|+ |.+.. -.+++..+.+++++...+.+-|+ |||+.+-.+ |+..++.+|.|++. T Consensus 167 ~lp~lTekD~~di~f~~~~~vD~ialSFVr~a~DV~~iR~~l~~~~~~~i~II--AKIE~~~av~NldeIi~~sDGIMVA 244 (587) T 2e28_A 167 NLPGITEKDRADILFGIRQGIDFIAASFVRRASDVLEIRELLEAHDALHIQII--AKIENEEGVANIDEILEAADGLMVA 244 (587) T ss_dssp CCCSCCHHHHHHHHHHHHHTCSEEEESSCCSHHHHHHHHHHHHHTTCTTSEEE--EEECSHHHHHTHHHHHHHSSEEEEE T ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCEE--EEEECCHHHHHHHHHHHHCCEEEEE T ss_conf 87334454599998761238989985676863569999987765216666557--8970545776599988756589997 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCC--CCCCCC-EECCC------ Q ss_conf 057899999830143433331000013568899875302455430354113432323333--102532-12013------ Q gi|254780653|r 221 GGMANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPT--QVVSAQ-SVPLD------ 291 (400) Q Consensus 221 G~lantfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~--~~~~~~-~i~~~------ 291 (400) =| -.|.+++- | +.--..|+++.++.+.+.++++-+...-+= ..+..|. +..++. .+-++ T Consensus 245 RG-------DLGvEip~---e-~VP~vQK~II~kc~~~gKPVI~ATQMLeSM-i~nprPTRAEvsDVANAV~DGtDavML 312 (587) T 2e28_A 245 RG-------DLGVEIPA---E-EVPLIQKLLIKKSNMLGKPVITATQMLDSM-QRNPRPTRAEASDVANAIFDGTDAVML 312 (587) T ss_dssp HH-------HHHHHSCG---G-GHHHHHHHHHHHHHHHTCCEEEESSSSGGG-GTCSSCCHHHHHHHHHHHHHTCSEEEE T ss_pred CC-------CCCCCCCH---H-HHHHHHHHHHHHHHHCCCEEEEEHHHHHHH-HHCCCCCCHHHHHHHHHHHCCCCEEEE T ss_conf 66-------63132899---9-989999999999998199599816877767-528999744567799998637856887 Q ss_pred ---CCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCC-CCCCHHHHHHHHHHHHHHHHCCCCCEEEE---CCCHHHHHHHH Q ss_conf ---345765200356777640577679997662532-27436588999999998611148858997---48046998998 Q gi|254780653|r 292 ---SIILDVGFKTVEYIKQVIAQARTVMWNGPLGVF-EIEPFDRATVEVAHYVAKLTKERRIISIA---GGGDTITALAH 364 (400) Q Consensus 292 ---~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~Gvf-E~~~F~~GT~~l~~~ia~~~~~~~~~siv---GGGdT~aai~~ 364 (400) -..=+--.++++.+..++..+..-+|.-..... .......-|.+++.+......+.++-.|+ --|.|+..+.+ T Consensus 313 SgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~l~a~aIv~~T~SG~TAr~iSk 392 (587) T 2e28_A 313 SGETAAGQYPVEAVKTMHQIALRTEQALEHRDILSQRTKESQTTITDAIGQSVAHTALNLDVAAIVTPTVSGKTPQMVAK 392 (587) T ss_dssp SHHHHTCSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSHHHHHHHH T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHH T ss_conf 46544675878999999999999985002345555420355687799999999999864899889998899779999983 Q ss_pred CCCCCCCCEEECC Q ss_conf 4887686468750 Q gi|254780653|r 365 AGISNEFTYVSTA 377 (400) Q Consensus 365 ~g~~~~~~hvSTg 377 (400) |--.-.+--++.- T Consensus 393 ~RP~~PIiA~T~~ 405 (587) T 2e28_A 393 YRPKAPIIAVTSN 405 (587) T ss_dssp TCCSSCEEEEESS T ss_pred HCCCCCEEEECCC T ss_conf 3959989998599 No 14 >1yj5_A 5' polynucleotide kinase-3' phosphatase catalytic domain; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: c.108.1.9 c.37.1.1 Probab=67.84 E-value=1.3 Score=23.03 Aligned_cols=165 Identities=18% Similarity=0.123 Sum_probs=81.1 Q ss_pred HHHHHHHHHHHCCCEEEEEECCCC-CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHH Q ss_conf 988989999988980999913778-8898473322478888764310133545666310255665531364648982424 Q gi|254780653|r 41 RVVPTILELVEKKAKVVIFSHLGR-PQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENV 119 (400) Q Consensus 41 ~~~pTI~~l~~~~akvii~SH~GR-Pkg~~~~~~Sl~~v~~~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN~ 119 (400) .+...|+.|.++|.+|||+|-|+- .+|... .-.+......+.+.|+.++.+.--... ....+-.+|-+..+.+ T Consensus 58 ~V~~~Lk~L~~~gy~IVI~TNQ~gi~~g~~~-~~~~~~ki~~i~~~l~ip~~~~~a~~~----~~~RKP~~GM~~~~~~- 131 (383) T 1yj5_A 58 EIPKKLQELAAEGYKLVIFTNQMGIGRGKLP-AEVFKGKVEAVLEKLGVPFQVLVATHA----GLNRKPVSGMWDHLQE- 131 (383) T ss_dssp THHHHHHHHHHHTCEEEEEEECHHHHHTSSC-HHHHHHHHHHHHHHHTSCCEEEEECSS----SSSSTTSTHHHHHHHH- T ss_pred CHHHHHHHHHHCCCEEEEEECCCHHCCCCCC-HHHHHHHHHHHHHHCCCCEEEEEECCC----CCCCCCCCHHHHHHHH- T ss_conf 7899999999889979999488033069989-999999999999975997799983687----7888996179999999- Q ss_pred HHCCCCCCCHHHHHHHHCCCCCEEEECC---------------HHHHCCCCCCEEECCCCCC-C-CCCHHHH-------- Q ss_conf 3034321000246653124364247544---------------0440113763330233210-0-0332556-------- Q gi|254780653|r 120 RFYSEEERNDPDFVRMLSRNGDFYINDA---------------FSVSHRAHASITGLSHLLP-S-YIGRAMQ-------- 174 (400) Q Consensus 120 Rf~~~E~~n~~~f~k~La~laDiyVnDA---------------F~~aHR~haS~~gi~~~lp-s-~aG~l~e-------- 174 (400) -+.+... -++. -=+||=|| ||++-|.-|-..|+.-+.| . +.|.-.. T Consensus 132 -~~n~~~~--id~~------~Sf~vGDaaGR~~~~~~~~~~~D~s~~D~~FA~N~gi~f~tpe~~F~~~~~~~~~~~~~~ 202 (383) T 1yj5_A 132 -QANEGIP--ISVE------DSVFVGDAAGRLANWAPGRKKKDFSCADRLFALNVGLPFATPEEFFLKWPAARFELPAFD 202 (383) T ss_dssp -TSSSSCC--CCGG------GCEEECSCCCBCTTSBTTBCSCCSCCHHHHHHHHHTCCEECHHHHTTCCCCCCBCCCSCC T ss_pred -HHCCCCC--CCHH------HEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCC T ss_conf -7277854--4532------538961456764455555433333013699998659860288898536876535567788 Q ss_pred -HHHHHH------HHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEEC Q ss_conf -577765------3310166787189996078025578899877306888862 Q gi|254780653|r 175 -KELSML------ESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIG 220 (400) Q Consensus 175 -kEi~~L------~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiig 220 (400) +++... ........+|.+.|+-|.--|-|=...++++..-+.+.+- T Consensus 203 p~~~~~~~~~~~~~~~~~~~~~~~liilvG~PGSGKST~a~~~~~~~~~~~i~ 255 (383) T 1yj5_A 203 PRTISSAGPLYLPESSSLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 255 (383) T ss_dssp GGGCCSCSCSSBSTTSCSSCSSCCEEEEECCTTSSHHHHHHHHTGGGTCEEEE T ss_pred HHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEC T ss_conf 45535665335775434578997599996788887148999973269978984 No 15 >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} Probab=66.41 E-value=6.5 Score=18.43 Aligned_cols=163 Identities=15% Similarity=0.233 Sum_probs=71.9 Q ss_pred EECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC-CCCCCHHHHHHHHHHCCC Q ss_conf 7772589999889899999889809999137788898473322478888764310133545-666310255665531364 Q gi|254780653|r 32 KVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIAESILHKNILF-VNDCIGSTLSQSIASLSE 110 (400) Q Consensus 32 ~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l~~~l~~~V~f-i~d~~g~~~~~~i~~l~~ 110 (400) -|||++.....+..+..+++.|...|.+ |-|.... -.+...+..+.+.....+.| ++|-.. -+ ..+.- T Consensus 21 ~IT~~~~~~~~l~~i~~~~~~gv~~iql----R~K~~~~--~e~~~l~~~l~~~~~~~~~liInd~~~----lA-~~~~a 89 (221) T 1yad_A 21 AITDDSKPVEELARIIITIQNEVDFIHI----RERSKSA--ADILKLLDLIFEGGIDKRKLVMNGRVD----IA-LFSTI 89 (221) T ss_dssp EECCSCSCHHHHHHHHHHHGGGCSEEEE----CCTTSCH--HHHHHHHHHHHHTTCCGGGEEEESCHH----HH-HTTTC T ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEE----CCCCCCH--HHHHHHHHHHHHHHCCCCEEEEECCHH----HH-HHCCC T ss_conf 9869987879999999999789989997----6899799--999999999998617698599969799----99-86499 Q ss_pred CCEEECCHHHHCCCCCCCHHHHHHHHCCCCCEEE----E--CCHHHHCCCCCCEEECCCCCC-----CCCCHHHHHHHHH Q ss_conf 6489824243034321000246653124364247----5--440440113763330233210-----0033255657776 Q gi|254780653|r 111 GGIILAENVRFYSEEERNDPDFVRMLSRNGDFYI----N--DAFSVSHRAHASITGLSHLLP-----SYIGRAMQKELSM 179 (400) Q Consensus 111 g~ilLLEN~Rf~~~E~~n~~~f~k~La~laDiyV----n--DAF~~aHR~haS~~gi~~~lp-----s~aG~l~ekEi~~ 179 (400) ..|-|=++- -.+..+|.+.+ |..| + +..-.+.+..+.-+++..+.| ...+. -++. T Consensus 90 dGvHlg~~d--------~~~~~~r~~~~--~~iIG~S~h~~~e~~~a~~~gaDYi~~gpif~T~tK~~~~~~----g~~~ 155 (221) T 1yad_A 90 HRVQLPSGS--------FSPKQIRARFP--HLHIGRSVHSLEEAVQAEKEDADYVLFGHVFETDCKKGLEGR----GVSL 155 (221) T ss_dssp CEEEECTTS--------CCHHHHHHHCT--TCEEEEEECSHHHHHHHHHTTCSEEEEECCC----------C----HHHH T ss_pred CEEECCCCC--------CCHHHHHHHCC--CCEEEEECCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHH----HHHH T ss_conf 888415576--------68999986454--878985444599999998659997830677666666531033----6788 Q ss_pred HHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHH-CCCEEEECHHHH Q ss_conf 533101667871899960780255788998773-068888620578 Q gi|254780653|r 180 LESCFSESKKPLVAIVGGSKVSTKITLLINLVK-KVDKLVIGGGMA 224 (400) Q Consensus 180 L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~-k~D~iiigG~la 224 (400) +..+....+.|++| |||-..+ . +..+.+ -++.+.+++++- T Consensus 156 l~~~~~~~~~PvvA-iGGI~~~-n---i~~~~~~Ga~gvav~s~I~ 196 (221) T 1yad_A 156 LSDIKQRISIPVIA-IGGMTPD-R---LRDVKQAGADGIAVMSGIF 196 (221) T ss_dssp HHHHHHHCCSCEEE-ESSCCGG-G---HHHHHHTTCSEEEESHHHH T ss_pred HHHHHHCCCCCEEE-ECCCCHH-H---HHHHHHCCCCEEEEEHHHH T ss_conf 87640035676798-6798999-9---9999980998899849997 No 16 >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 Probab=66.26 E-value=3.5 Score=20.22 Aligned_cols=42 Identities=19% Similarity=0.342 Sum_probs=32.0 Q ss_pred CCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEEC Q ss_conf 771010015996899982016713185777258999988989999988980999913 Q gi|254780653|r 5 RTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSH 61 (400) Q Consensus 5 ~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH 61 (400) .++-=++.++||+||| +..|++ +..-++.|++.||+|+++|. T Consensus 3 ~sL~l~~~l~~k~vLV-------VGgG~V--------A~rK~~~LL~agA~vtVVsp 44 (274) T 1kyq_A 3 KSLQLAHQLKDKRILL-------IGGGEV--------GLTRLYKLMPTGCKLTLVSP 44 (274) T ss_dssp CCEEEEECCTTCEEEE-------EEESHH--------HHHHHHHHGGGTCEEEEEEE T ss_pred CCCCCCEEECCCEEEE-------ECCCHH--------HHHHHHHHHHCCCEEEEEEC T ss_conf 3361106828986999-------899899--------99999999968996999929 No 17 >3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3e0w_A 3e0v_A Probab=66.20 E-value=3.7 Score=20.01 Aligned_cols=328 Identities=14% Similarity=0.194 Sum_probs=162.7 Q ss_pred ECCCCCCCCEECCHHHHHH-------HHHHHHHHHHCCCEEEE--EECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC Q ss_conf 0167131857772589999-------88989999988980999--91377888984733224788887643101335456 Q gi|254780653|r 23 DWNVPFIDGKVADVTRIER-------VVPTILELVEKKAKVVI--FSHLGRPQSKSDKDCSLFKVVSIAESILHKNILFV 93 (400) Q Consensus 23 D~NvPi~~g~I~d~~RI~~-------~~pTI~~l~~~~akvii--~SH~GRPkg~~~~~~Sl~~v~~~l~~~l~~~V~fi 93 (400) ++|.|..+- -.|+|.+ ...+|+.|+++|..+.= +||- .+ +.....-...+.+++.++++|... T Consensus 11 ~~~~~~~~~---r~tKIIaTiGPss~~~~~l~~l~~aGv~v~RiN~SHg-t~----e~~~~~i~~iR~~~~~~~~~v~Il 82 (499) T 3hqn_D 11 SIFDPVANY---RAARIICTIGPSTQSVEALKGLIQSGMSVARMNFSHG-SH----EYHQTTINNVRQAAAELGVNIAIA 82 (499) T ss_dssp CTTSCCCSS---CCSEEEEECSTTTCSHHHHHHHHHHTEEEEEEETTSS-CH----HHHHHHHHHHHHHHHHHTCCCEEE T ss_pred HHCCCCCCC---CCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCC-CH----HHHHHHHHHHHHHHHHHCCCEEEE T ss_conf 213897568---8872998328887999999999987998999989999-99----999999999999999839983899 Q ss_pred CCCCHHHHHHHHHHCCCCCEEECCHHHHC--CCC-----CC------CHHHHHHHHCCCCCEEEECCHHH----HCCCCC Q ss_conf 66310255665531364648982424303--432-----10------00246653124364247544044----011376 Q gi|254780653|r 94 NDCIGSTLSQSIASLSEGGIILAENVRFY--SEE-----ER------NDPDFVRMLSRNGDFYINDAFSV----SHRAHA 156 (400) Q Consensus 94 ~d~~g~~~~~~i~~l~~g~ilLLEN~Rf~--~~E-----~~------n~~~f~k~La~laDiyVnDAF~~----aHR~ha 156 (400) -|.-|++.+. ..++++.+.|-++-.++ .++ .. +-+++.+.+..--.+|+.|.--. .+.... T Consensus 83 ~Dl~GpkIRt--g~~~~~~i~l~~G~~v~~~~~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~I~idDG~i~l~V~~~~~~~ 160 (499) T 3hqn_D 83 LDTKGPEIRT--GQFVGGDAVMERGATCYVTTDPAFADKGTKDKFYIDYQNLSKVVRPGNYIYIDDGILILQVQSHEDEQ 160 (499) T ss_dssp EECCCCCCBB--CCBGGGEEEECTTCEEEEECCGGGTTCBCSSEEEBSCTTHHHHCCTTCEEEETTTTEEEEEEEEEETT T ss_pred EECCCCEEEE--EEECCCCEEEECCCEEEEECCCCCCCCCCCCEEEECCHHHHHHCCCCCEEEEECCEEEEEEEEECCCC T ss_conf 9899984577--67369978983698899965642245888887962506658764899889984571799999753884 Q ss_pred CE---------------EECCC---CCCC------------------CCCHHH---HHHHHHHHHHCCCCCCCEEEEEEE Q ss_conf 33---------------30233---2100------------------033255---657776533101667871899960 Q gi|254780653|r 157 SI---------------TGLSH---LLPS------------------YIGRAM---QKELSMLESCFSESKKPLVAIVGG 197 (400) Q Consensus 157 S~---------------~gi~~---~lps------------------~aG~l~---ekEi~~L~~~l~~~~~P~v~IiGG 197 (400) .+ +-+|. -+|. +.+..| .+++..+.+++....+ -+-|+ T Consensus 161 ~v~~~v~~gG~l~s~Kgvnip~~~~~lp~ltekD~~di~~a~~~~vD~valSFVrs~~dv~~lr~~l~~~~~-~~~ii-- 237 (499) T 3hqn_D 161 TLECTVTNSHTISDRRGVNLPGCDVDLPAVSAKDRVDLQFGVEQGVDMIFASFIRSAEQVGDVRKALGPKGR-DIMII-- 237 (499) T ss_dssp EEEEEECSCEEEETTCBEECTTSCCCCCSSCHHHHHHHHHHHHTTCSEEEETTCCSHHHHHHHHHHHCGGGT-TSEEE-- T ss_pred EEEEEEECCEEECCCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCC-CCEEE-- T ss_conf 699999667585378879668986686445510199999999618998996688987899999999997199-86699-- Q ss_pred CCHHHHHHH--HHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCC Q ss_conf 780255788--998773068888620578999998301434333310000135688998753024554303541134323 Q gi|254780653|r 198 SKVSTKITL--LINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMK 275 (400) Q Consensus 198 aKisdKi~~--i~~L~~k~D~iiigG~lantfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~ 275 (400) |||+++..+ ++.+++.+|.|++.=|= .|.+++- ++.-...++++.++.+++.++++-+...-+-. . T Consensus 238 aKIE~~~a~~nl~eI~~~sDgimiaRGD-------Lg~e~~~----e~vp~~Qk~ii~~~~~~gKpvivATqmLeSM~-~ 305 (499) T 3hqn_D 238 CKIENHQGVQNIDSIIEESDGIMVARGD-------LGVEIPA----EKVVVAQKILISKCNVAGKPVICATQMLESMT-Y 305 (499) T ss_dssp EEECSHHHHHTHHHHHHHSSEEEEEHHH-------HHHHSCH----HHHHHHHHHHHHHHHHHTCCEEEESSSSGGGG-T T ss_pred EEECCHHHHHHHHHHHHHCCEEEEECCC-------CCCCCCH----HHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHH-H T ss_conf 9962788886488877646489996566-------3232898----78389999999999982994896168789887-5 Q ss_pred CCCCC--CCCCCC-EECCC--CCCCC----C---CCHHHHHHHHHHCCCCEEEEECCCCC---CCCCCHHHHHHHHHHHH Q ss_conf 23333--102532-12013--34576----5---20035677764057767999766253---22743658899999999 Q gi|254780653|r 276 TGIPT--QVVSAQ-SVPLD--SIILD----V---GFKTVEYIKQVIAQARTVMWNGPLGV---FEIEPFDRATVEVAHYV 340 (400) Q Consensus 276 ~~~~~--~~~~~~-~i~~~--~~i~D----I---Gp~Ti~~~~~~I~~AktI~WNGP~Gv---fE~~~F~~GT~~l~~~i 340 (400) +..|+ ++.++. .+-++ ...+- + --++++.++.++..|+..+|.=+.-- ++.+....-+.+++.+. T Consensus 306 ~p~PTRAEv~Dvanav~dG~D~vmLs~ETa~G~~P~~~V~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aIa~aa 385 (499) T 3hqn_D 306 NPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSALNEYVFFNSIKKLQHIPMSADEAVCSSA 385 (499) T ss_dssp SSSCCHHHHHHHHHHHHHTCSEEEESHHHHTCSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCCSSCCHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCHHHHHHHH T ss_conf 89997277888998887085089974652357688999999999999998501223443210100257766167799999 Q ss_pred HHHHCCCCC--EEEE-CCCHHHHHHHHCCCCCCCCEEE Q ss_conf 861114885--8997-4804699899848876864687 Q gi|254780653|r 341 AKLTKERRI--ISIA-GGGDTITALAHAGISNEFTYVS 375 (400) Q Consensus 341 a~~~~~~~~--~siv-GGGdT~aai~~~g~~~~~~hvS 375 (400) .......++ +.+. --|-|+..+.++--.-.+--++ T Consensus 386 v~~A~~~~akaIvv~T~sG~Ta~~iSk~RP~~PIiavT 423 (499) T 3hqn_D 386 VNSVYETKAKAMVVLSNTGRSARLVAKYRPNCPIVCVT 423 (499) T ss_dssp HHHHHHHTCSEEEEECSSSHHHHHHHHTCCSSCEEEEE T ss_pred HHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEC T ss_conf 99987247878999889848999999549699889987 No 18 >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreductase, porphyrin biosynthesis; 2.30A {Bacillus megaterium} Probab=65.26 E-value=3.4 Score=20.23 Aligned_cols=35 Identities=17% Similarity=0.369 Sum_probs=29.6 Q ss_pred HCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEE Q ss_conf 01599689998201671318577725899998898999998898099991 Q gi|254780653|r 11 RDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFS 60 (400) Q Consensus 11 ~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~S 60 (400) -|++||+||| +..|++ +..-++.|++.||+|.++| T Consensus 27 l~L~~k~VLV-------VGgG~v--------A~rKi~~Ll~~ga~VtVis 61 (223) T 3dfz_A 27 LDLKGRSVLV-------VGGGTI--------ATRRIKGFLQEGAAITVVA 61 (223) T ss_dssp ECCTTCCEEE-------ECCSHH--------HHHHHHHHGGGCCCEEEEC T ss_pred EECCCCEEEE-------ECCCHH--------HHHHHHHHHHCCCEEEEEE T ss_conf 9839985999-------898899--------9999999974899799993 No 19 >1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* Probab=62.56 E-value=7.7 Score=17.98 Aligned_cols=70 Identities=17% Similarity=0.142 Sum_probs=43.1 Q ss_pred HHHHHHHHHHHHCCCEEE-EEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC Q ss_conf 998898999998898099-991377888984733224788887643101335456663102556655313646 Q gi|254780653|r 40 ERVVPTILELVEKKAKVV-IFSHLGRPQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEG 111 (400) Q Consensus 40 ~~~~pTI~~l~~~~akvi-i~SH~GRPkg~~~~~~Sl~~v~~~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g 111 (400) .-++++++.|++++..++ ++||-.||.|... .....|+..+.+ -.|.++...++...+...+.+..+++. T Consensus 13 ~~a~~~L~~L~~~~~~i~~VvT~pd~~~grg~-~~~~~~v~~~A~-~~~i~~~~~~~~~~~~~~~~~~~~~~d 83 (314) T 1fmt_A 13 DFAARHLDALLSSGHNVVGVFTQPDRPAGRGK-KLMPSPVKVLAE-EKGLPVFQPVSLRPQENQQLVAELQAD 83 (314) T ss_dssp HHHHHHHHHHHHTTCEEEEEECCCCBC-------CBCCHHHHHHH-HTTCCEECCSCSCSHHHHHHHHHTTCS T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC-CCCCCHHHHHHH-HCCCCCCCCCCCCCHHHHHHHHHCCCC T ss_conf 89999999999789977999909998556888-488997999999-859984035234628899999851999 No 20 >2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis CDC1551} SCOP: c.73.1.2 Probab=55.60 E-value=10 Score=17.22 Aligned_cols=48 Identities=21% Similarity=0.229 Sum_probs=37.3 Q ss_pred CCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC Q ss_conf 1599689998201671318577725899998898999998898099991377888 Q gi|254780653|r 12 DIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQ 66 (400) Q Consensus 12 d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPk 66 (400) .++||++.|.+.=++ |+|+..+...+.-|..|.+.|-++||. |=|+|. T Consensus 22 ~~r~ktiVIKlGGsv------l~d~~~~~~l~~dIa~L~~~G~~vVlV-hG~g~~ 69 (299) T 2ap9_A 22 QLHGKVVVVKYGGNA------MTDDTLRRAFAADMAFLRNCGIHPVVV-HGGGPQ 69 (299) T ss_dssp HHTTCEEEEEECTHH------HHSHHHHHHHHHHHHHHHTTTCEEEEE-ECCSHH T ss_pred HHCCCEEEEEECCHH------HCCHHHHHHHHHHHHHHHHCCCEEEEE-ECCCHH T ss_conf 968998999989168------559779999999999999779969999-589535 No 21 >2j28_9 Signal recognition particle 54; ribosome, protein/RNA complex; 8.0A {Escherichia coli} Probab=55.43 E-value=10 Score=17.20 Aligned_cols=155 Identities=19% Similarity=0.234 Sum_probs=104.9 Q ss_pred CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC-CCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCHHH- Q ss_conf 80999913778889847332247888876431013354566-6310255665531364648982424303432100024- Q gi|254780653|r 54 AKVVIFSHLGRPQSKSDKDCSLFKVVSIAESILHKNILFVN-DCIGSTLSQSIASLSEGGIILAENVRFYSEEERNDPD- 131 (400) Q Consensus 54 akvii~SH~GRPkg~~~~~~Sl~~v~~~l~~~l~~~V~fi~-d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n~~~- 131 (400) ..||++- | |.|- -+..|+..+|.++.+.-+++|..+. |++-+.+.++++.+.. -=++.||......+|. T Consensus 99 p~VIm~V--G-vnGs-GKTTTiaKLA~~~k~k~~kkVllva~DTfR~AA~eQLk~~a~-----~~~vpv~~~~~~~dp~~ 169 (430) T 2j28_9 99 PAVVLMA--G-LQGA-GKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAE-----QVGVDFFPSDVGQKPVD 169 (430) T ss_dssp SCEEEEE--C-SSSS-SSTTTHHHHHHHHHTSSSCCCCBCCCCCSSSCSHHHHHHHHH-----HTTCCCCCCSSCCCTTH T ss_pred CEEEEEE--C-CCCC-CCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHH-----HCCCCCCCCCCCCCHHH T ss_conf 8599997--5-6899-855429999999999479858999557555158999999986-----04777415665568789 Q ss_pred -----HHHHHCCCCCEEEECCHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHH Q ss_conf -----665312436424754404401137633302332100033255657776533101667871899960780255788 Q gi|254780653|r 132 -----FVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITL 206 (400) Q Consensus 132 -----f~k~La~laDiyVnDAF~~aHR~haS~~gi~~~lps~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~ 206 (400) ....-....|+.+-|-=|..|++. .+-+|+..+.++. +|.. .+.|+-..-=.+-+.. T Consensus 170 va~~ai~~ak~~~~DvviiDTAGR~~~d~----------------~lm~El~~i~~~~-~p~e-~lLV~da~~gq~~~~q 231 (430) T 2j28_9 170 IVNAALKEAKLKFYDVLLVDTAGRLHVDE----------------AMMDEIKQVHASI-NPVE-TLFVVDAMTGQDAANT 231 (430) T ss_dssp HHHHHHHHHHHTTCSCEEEEECCCCSSHH----------------HHHHHHHHHHHHH-CCSE-EEEEEETTTGGGGHHH T ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHH----------------HHHHHHHHHHHHC-CCCE-EEEEEECCCCHHHHHH T ss_conf 99999999998699989994676302159----------------9999999999856-9857-9998425567567999 Q ss_pred HHHHHHC--CCEEEEC-------HHHHHHHHHHHCCCC Q ss_conf 9987730--6888862-------057899999830143 Q gi|254780653|r 207 LINLVKK--VDKLVIG-------GGMANSFLVAQGMGV 235 (400) Q Consensus 207 i~~L~~k--~D~iiig-------G~lantfL~A~G~~I 235 (400) ++.+-+. .+.++++ ||.|.......|..| T Consensus 232 a~~f~~~~~~~gvIlTKlDg~akgG~alsi~~~~~~PI 269 (430) T 2j28_9 232 AKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPI 269 (430) T ss_dssp HHHHHTTCSSCEEEEECSSSCSCCTHHHHHHHTTTCCB T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCE T ss_conf 99998635886058850256777307855999979696 No 22 >3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, structural genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A Probab=54.31 E-value=7.4 Score=18.10 Aligned_cols=311 Identities=14% Similarity=0.181 Sum_probs=148.0 Q ss_pred HHHHHHHHHHCCCEEEE--EECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH-H-----HHCCCCCE Q ss_conf 88989999988980999--9137788898473322478888764310133545666310255665-5-----31364648 Q gi|254780653|r 42 VVPTILELVEKKAKVVI--FSHLGRPQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQS-I-----ASLSEGGI 113 (400) Q Consensus 42 ~~pTI~~l~~~~akvii--~SH~GRPkg~~~~~~Sl~~v~~~l~~~l~~~V~fi~d~~g~~~~~~-i-----~~l~~g~i 113 (400) ...+|+.|++.|..+.= +||-. + .+-.--+..+.+..++.++++|...-|.-|++.+.. + -.++.|+. T Consensus 50 ~~e~l~~L~~aG~dv~RiN~SHg~-~---e~~~~~i~~iR~a~~~~~~~~v~Il~Dl~GpkIRtg~~~~~~~i~l~~G~~ 125 (511) T 3gg8_A 50 NVDTLVKMIDAGMNVCRLNFSHGD-H---ETHARTVQNIQEAMKQRPEARLAILLDTKGPEIRTGFLKDHKPITLQQGAT 125 (511) T ss_dssp SHHHHHHHHHHTEEEEEEETTSSC-H---HHHHHHHHHHHHHHHHCTTCCCEEEEECCCCCCBBCC-----CEEECTTCE T ss_pred CHHHHHHHHHCCCCEEEEECCCCC-H---HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCEEEECCCCE T ss_conf 989999999869999999889999-9---999999999999998558997599995889856899737995378458988 Q ss_pred EECC-HHHHCCCCC---CCHHHHHHHHCCCCCEEEECCH-------------------------------HHHCCCCCCE Q ss_conf 9824-243034321---0002466531243642475440-------------------------------4401137633 Q gi|254780653|r 114 ILAE-NVRFYSEEE---RNDPDFVRMLSRNGDFYINDAF-------------------------------SVSHRAHASI 158 (400) Q Consensus 114 lLLE-N~Rf~~~E~---~n~~~f~k~La~laDiyVnDAF-------------------------------~~aHR~haS~ 158 (400) +.|- +--....++ -+.++|.+.+..---+|++|.- -......+.. T Consensus 126 v~l~~~~~~~~~~~~i~v~~~~l~~~vk~Gd~I~idDG~i~l~V~~~~~~~v~~~v~~~G~l~~~Kgvn~p~~~~~~~~l 205 (511) T 3gg8_A 126 LKIVTDYNLIGDETTIACSYGALPQSVKPGNTILIADGSLSVKVVEVGSDYVITQAQNTATIGERKNMNLPNVKVQLPVI 205 (511) T ss_dssp EEEESCTTCCCCSSEEEBSCTTHHHHCCTTCEEEETTTTEEEEEEEECSSEEEEEESSCEEECSSCBEECTTCCCCSCSS T ss_pred EEEECCCCCCCCCCEEEEECCCCCCCCCCCCEEEECCCCEEEEEEEEECCCEEEECCCCCCCCCCCEECCCCCCCCCCCC T ss_conf 99955886679867798631433223578988998189558999984021000100245445775121268752356665 Q ss_pred EECC-----CC-CCC---CCCHHH---HHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHH--HHHHHHCCCEEEECHHHH Q ss_conf 3023-----32-100---033255---657776533101667871899960780255788--998773068888620578 Q gi|254780653|r 159 TGLS-----HL-LPS---YIGRAM---QKELSMLESCFSESKKPLVAIVGGSKVSTKITL--LINLVKKVDKLVIGGGMA 224 (400) Q Consensus 159 ~gi~-----~~-lps---~aG~l~---ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~--i~~L~~k~D~iiigG~la 224 (400) +.-- ++ ++. +.+..| .+.+..+..++.... +-+.|+ |||.++-.+ |+..++.+|.|++.=|= T Consensus 206 tekD~~~~i~~a~~~~vd~ialSFv~s~~dv~~~r~~l~~~~-~~~~ii--aKIE~~~a~~nl~eI~~~sDgimIaRGD- 281 (511) T 3gg8_A 206 GEKDKHDILNFGIPMGCNFIAASFVQSADDVRYIRGLLGPRG-RHIRII--PKIENVEGLVNFDEILAEADGIMIARGD- 281 (511) T ss_dssp CHHHHHHHHHTTTTTTCCEEEETTCCSHHHHHHHHHHHTGGG-TTCEEE--EEECSHHHHHTHHHHHHHCSCEEEEHHH- T ss_pred CCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCC-CEEEEE--EEECCHHHHHHHHHHHHHCCEEEEECCC- T ss_conf 556378999999871999999768784788899999998579-806899--9533487776379898738789997676- Q ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCC--CCCCCCE-ECCCC--CCCC--- Q ss_conf 99999830143433331000013568899875302455430354113432323333--1025321-20133--4576--- Q gi|254780653|r 225 NSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPT--QVVSAQS-VPLDS--IILD--- 296 (400) Q Consensus 225 ntfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~--~~~~~~~-i~~~~--~i~D--- 296 (400) .|.++|- ++.-...+.+++++.+.+.++++-+...-+- ..+..|. ++.++.. +.++- ..|- T Consensus 282 ------Lg~ei~~----e~vp~~Qk~Ii~~~~~~~kpvivATqmLeSM-~~~~~PTRAEv~Dvanav~dG~D~vmLs~ET 350 (511) T 3gg8_A 282 ------LGMEIPP----EKVFLAQKMMIAKCNVVGKPVITATQMLESM-IKNPRPTRAEAADVANAVLDGTDCVMLSGET 350 (511) T ss_dssp ------HHHHSCH----HHHHHHHHHHHHHHHHTTCCEEEESSSSGGG-GTCSSCCHHHHHHHHHHHHHTCSEEEESHHH T ss_pred ------CCCCCCH----HHHHHHHHHHHHHHHHCCCEEEECHHHHHHH-HHCCCCCCHHHHHHHHHHHCCCCEEEECCCC T ss_conf ------3143898----8958999999999998099299820779999-7489774065889999998178578874664 Q ss_pred -CC---CHHHHHHHHHHCCCCEEEEECCCCCC---CCCCHHHHHHHHHHHHHHHHCCCCCEEEE---CCCHHHHHHHHCC Q ss_conf -52---00356777640577679997662532---27436588999999998611148858997---4804699899848 Q gi|254780653|r 297 -VG---FKTVEYIKQVIAQARTVMWNGPLGVF---EIEPFDRATVEVAHYVAKLTKERRIISIA---GGGDTITALAHAG 366 (400) Q Consensus 297 -IG---p~Ti~~~~~~I~~AktI~WNGP~Gvf---E~~~F~~GT~~l~~~ia~~~~~~~~~siv---GGGdT~aai~~~g 366 (400) +| .++++.+..++..|...+|.-+..-. ..+....-+.+++.+......+.++-.|| -=|-|+..+.++- T Consensus 351 a~G~~P~~~V~~~~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aAv~~A~~l~akaIVv~T~SG~TA~~iS~~R 430 (511) T 3gg8_A 351 ANGEFPVITVETMARICYEAETCVDYPALYRAMCLAVPPPISTQEAVARAAVETAECVNAAIILALTETGQTARLIAKYR 430 (511) T ss_dssp HTCSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHHHHTCSEEEEECSSSHHHHHHHHTC T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHC T ss_conf 45767679999999999999844344767777654068853069999999999985369988999879867999999539 Q ss_pred CCCCC Q ss_conf 87686 Q gi|254780653|r 367 ISNEF 371 (400) Q Consensus 367 ~~~~~ 371 (400) -.-.+ T Consensus 431 P~~PI 435 (511) T 3gg8_A 431 PMQPI 435 (511) T ss_dssp CSSCE T ss_pred CCCCE T ss_conf 79988 No 23 >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Probab=53.88 E-value=11 Score=17.04 Aligned_cols=135 Identities=21% Similarity=0.260 Sum_probs=79.2 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCC-C----------EEEECHHHHHHHHHHHCC Q ss_conf 10003325565777653310166787189996078025578899877306-8----------888620578999998301 Q gi|254780653|r 165 LPSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKV-D----------KLVIGGGMANSFLVAQGM 233 (400) Q Consensus 165 lps~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~-D----------~iiigG~lantfL~A~G~ 233 (400) ++.+.|+ ++|++.+..++....++-+.++|-+-+ -|-.+++.|..+. . +++-- -++... | T Consensus 21 l~~~igR--d~Ei~~l~~iL~r~~k~n~lLVGepGV-GKTaiV~~la~ri~~~~vp~~L~~~~i~~l-d~~~Lv--A--- 91 (187) T 2p65_A 21 LDPVIGR--DTEIRRAIQILSRRTKNNPILLGDPGV-GKTAIVEGLAIKIVQGDVPDSLKGRKLVSL-DLSSLI--A--- 91 (187) T ss_dssp SCCCCSC--HHHHHHHHHHHTSSSSCEEEEESCGGG-CHHHHHHHHHHHHHTTCSCTTTTTCEEEEE-CHHHHH--H--- T ss_pred CCCCCCH--HHHHHHHHHHHHCCCCCCCEEECCCCC-CHHHHHHHHHHHHHCCCCCHHHCCCEEEEE-EHHHHH--C--- T ss_conf 9877482--999999999985667899668558873-679999999999980899988869879996-088987--4--- Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEE-CCCCCCCCCCCCCCCCCEE----CCCCCCCCCCCHHHHHHHHH Q ss_conf 434333310000135688998753024554303541-1343232333310253212----01334576520035677764 Q gi|254780653|r 234 GVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVV-VAREMKTGIPTQVVSAQSV----PLDSIILDVGFKTVEYIKQV 308 (400) Q Consensus 234 ~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D~~-v~~~~~~~~~~~~~~~~~i----~~~~~i~DIGp~Ti~~~~~~ 308 (400) | .-+..+|.+-.+.++..+++...+++|=+|=+ ..-...... ....++.++ -....+-=||.-|-+.|.+. T Consensus 92 --G-~~~~G~~e~rl~~l~~e~~~~~~~iILfiDe~h~l~~~g~~~-~~~~~~~~iLkp~L~~g~l~~I~atT~eey~~~ 167 (187) T 2p65_A 92 --G-AKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVA-EGALDAGNILKPMLARGELRCIGATTVSEYRQF 167 (187) T ss_dssp --H-CCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSC-TTSCCTHHHHHHHHHTTCSCEEEEECHHHHHHH T ss_pred --C-CCCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHCCCCCC-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHH T ss_conf --8-983657999999999999846588699833189883367767-772669999999870798179984799999999 Q ss_pred HCCC Q ss_conf 0577 Q gi|254780653|r 309 IAQA 312 (400) Q Consensus 309 I~~A 312 (400) +.+- T Consensus 168 ~e~d 171 (187) T 2p65_A 168 IEKD 171 (187) T ss_dssp TTTC T ss_pred HHCC T ss_conf 8719 No 24 >1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1 Probab=52.78 E-value=11 Score=17.05 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=12.1 Q ss_pred HHHCCCCCCCCCCCCCCHHHHHHH Q ss_conf 983014343333100001356889 Q gi|254780653|r 229 VAQGMGVGRSLCQRDFSDNVHQIA 252 (400) Q Consensus 229 ~A~G~~IG~Sl~e~~~~~~ak~i~ 252 (400) +-+|..|++-.+-.+.-+...+.+ T Consensus 260 k~mGlPi~~~i~AtN~N~il~~~~ 283 (428) T 1vb3_A 260 KSLGLPVKRFIAATNVNDTVPRFL 283 (428) T ss_dssp HHTTCCCSEEEEEECSCCHHHHHH T ss_pred HHCCCCCEEEEEECCCCCCHHHHH T ss_conf 867998226999648980078999 No 25 >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} Probab=52.51 E-value=11 Score=16.90 Aligned_cols=68 Identities=12% Similarity=0.169 Sum_probs=41.2 Q ss_pred HCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCC Q ss_conf 01599689998201671318577725899998898999998898099991377888984733224788887643101335 Q gi|254780653|r 11 RDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIAESILHKNI 90 (400) Q Consensus 11 ~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l~~~l~~~V 90 (400) .||+||++||- | -...|=+ .+-+.|.++|++|++..+.+|.. -.+..+++.+++. +.++ T Consensus 7 ~~L~gKvalIT---------G---as~GIG~--aiA~~la~~Ga~Vvi~~~~~~~~------~~~~~~~~~i~~~-g~~~ 65 (262) T 3ksu_A 7 HDLKNKVIVIA---------G---GIKNLGA--LTAKTFALESVNLVLHYHQAKDS------DTANKLKDELEDQ-GAKV 65 (262) T ss_dssp SCCTTCEEEEE---------T---CSSHHHH--HHHHHHTTSSCEEEEEESCGGGH------HHHHHHHHHHHTT-TCEE T ss_pred CCCCCCEEEEE---------C---CCCHHHH--HHHHHHHHCCCEEEEECCCCCCH------HHHHHHHHHHHHC-CCEE T ss_conf 89999989993---------8---9878999--99999998699899980886798------9999999999963-9839 Q ss_pred CCCC-CCCHH Q ss_conf 4566-63102 Q gi|254780653|r 91 LFVN-DCIGS 99 (400) Q Consensus 91 ~fi~-d~~g~ 99 (400) .++. |...+ T Consensus 66 ~~~~~Dv~~~ 75 (262) T 3ksu_A 66 ALYQSDLSNE 75 (262) T ss_dssp EEEECCCCSH T ss_pred EEEECCCCCH T ss_conf 9997679999 No 26 >2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* Probab=52.22 E-value=9.3 Score=17.46 Aligned_cols=54 Identities=19% Similarity=0.178 Sum_probs=25.2 Q ss_pred HHHHHHHHHHHHHHHHC-CC-----EEEEEECCCCCCCCCCCCCCHH---HHHHHHHHHCCCCCCCCCC Q ss_conf 58999988989999988-98-----0999913778889847332247---8888764310133545666 Q gi|254780653|r 36 VTRIERVVPTILELVEK-KA-----KVVIFSHLGRPQSKSDKDCSLF---KVVSIAESILHKNILFVND 95 (400) Q Consensus 36 ~~RI~~~~pTI~~l~~~-~a-----kvii~SH~GRPkg~~~~~~Sl~---~v~~~l~~~l~~~V~fi~d 95 (400) ..-.+...|.|+.++++ +- ..|-.+ . .| |- ..+|. ..++.|+-.++.|+.-++. T Consensus 45 r~H~~~l~~~i~~~l~~a~i~~~~id~iavt-~-gP-G~---~~~L~vG~~~Ak~la~~~~~P~i~v~H 107 (330) T 2ivn_A 45 EHHARLMKPLLRKALSEAGVSLDDIDVIAFS-Q-GP-GL---GPALRVVATAARALAVKYRKPIVGVNH 107 (330) T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTTCCEEEEE-E-ES-SC---HHHHHHHHHHHHHHHHHTTCCEEEEEH T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHCCEEEEE-C-CC-CC---CCCHHHHHHHHHHHHHHCCCCEEEECC T ss_conf 9999999999999999849985568668881-2-89-84---102699999999999860876376263 No 27 >3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 1zjh_A 3g2g_A 1t5a_A* 3bjt_A 3bjf_A* 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* 1aqf_A* 1pkm_A 2g50_A* 1pkn_A 2vgb_A* 2vgf_A* 2vgg_A* ... Probab=52.21 E-value=4.1 Score=19.76 Aligned_cols=317 Identities=15% Similarity=0.200 Sum_probs=154.9 Q ss_pred HHHHHHHHHHCCCEEEEE--ECCCCCCCCCCCCCCHHHHHHHHHH-----HCCCCCCCCCCCCHHHHHHH-H-------H Q ss_conf 889899999889809999--1377888984733224788887643-----10133545666310255665-5-------3 Q gi|254780653|r 42 VVPTILELVEKKAKVVIF--SHLGRPQSKSDKDCSLFKVVSIAES-----ILHKNILFVNDCIGSTLSQS-I-------A 106 (400) Q Consensus 42 ~~pTI~~l~~~~akvii~--SH~GRPkg~~~~~~Sl~~v~~~l~~-----~l~~~V~fi~d~~g~~~~~~-i-------~ 106 (400) ...+|+.++++|..+.-+ || |.++. -.-.+..+.+.-++ .++++|...-|.-|++.+.. + - T Consensus 76 ~~e~l~~li~aG~nv~RiN~SH-g~~e~---~~~~i~~iR~~~~~~~~~~~~~~pvaIllDl~GpkIRtG~l~~~~~~~i 151 (550) T 3gr4_A 76 SVETLKEMIKSGMNVARLNFSH-GTHEY---HAETIKNVRTATESFASDPILYRPVAVALDTKGPEIRTGLIKGSGTAEV 151 (550) T ss_dssp SHHHHHHHHHHTCCEEEEETTS-SCHHH---HHHHHHHHHHHHHTTTTCTTTCCCCEEEEECCCSCCBBCCBTTBTTCCE T ss_pred CHHHHHHHHHCCCCEEEEECCC-CCHHH---HHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEECCCCCEEE T ss_conf 9999999998799899998999-99999---9999999999999748664578522899979998678889558984127 Q ss_pred HCCCCCEEECCHHHHCCCC------CCCHHHHHHHHCCCCCEEEECCHHHH---------------------CCCCCCEE Q ss_conf 1364648982424303432------10002466531243642475440440---------------------11376333 Q gi|254780653|r 107 SLSEGGIILAENVRFYSEE------ERNDPDFVRMLSRNGDFYINDAFSVS---------------------HRAHASIT 159 (400) Q Consensus 107 ~l~~g~ilLLEN~Rf~~~E------~~n~~~f~k~La~laDiyVnDAF~~a---------------------HR~haS~~ 159 (400) .|+.|+.+-|-.-.-+.+. .-+.++|.+.+..--.+|++|.--.. -|..-.+- T Consensus 152 ~L~~G~~v~lt~~~~~~~~~~~~~i~v~~~~l~~~vk~Gd~I~idDG~i~l~V~~~~~~~i~~~V~~gG~L~s~KgvnlP 231 (550) T 3gr4_A 152 ELKKGATLKITLDNAYMEKCDENILWLDYKNICKVVEVGSKIYVDDGLISLQVKQKGADFLVTEVENGGSLGSKKGVNLP 231 (550) T ss_dssp EECTTCEEEEECCGGGTTCBCSSEEEBSCTTHHHHCCTTCEEEETTTTEEEEEEEECSSEEEEEEEECEEECSSCBEECT T ss_pred EECCCCEEEEECCCCCCCCCCCCEEEECCHHCCCCCCCCCEEEEECCCCEEEEEEECCCCCEEEECCCCEECCCCEEECC T ss_conf 96589999998278656788777687454101000377838999547508999887068517997257387699726418 Q ss_pred ECCCCCCC------------------CCCHHH---HHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHH--HHHHHHCCCE Q ss_conf 02332100------------------033255---657776533101667871899960780255788--9987730688 Q gi|254780653|r 160 GLSHLLPS------------------YIGRAM---QKELSMLESCFSESKKPLVAIVGGSKVSTKITL--LINLVKKVDK 216 (400) Q Consensus 160 gi~~~lps------------------~aG~l~---ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~--i~~L~~k~D~ 216 (400) |...-+|+ +.+..| .+.+..+.+++.+... -+-|+ |||+++-.+ |+..++.+|. T Consensus 232 ~~~~~lp~ltekD~~di~fa~~~~vD~ialSFVr~a~dv~~~r~~l~~~g~-~i~II--aKIE~~~av~NldeIl~~sDg 308 (550) T 3gr4_A 232 GAAVDLPAVSEKDIQDLKFGVEQDVDMVFASFIRKASDVHEVRKVLGEKGK-NIKII--SKIENHEGVRRFDEILEASDG 308 (550) T ss_dssp TSCCCCCSSCHHHHHHHHHHHHTTCSEEEETTCCSHHHHHHHHHHHTTTTT-TSEEE--EEECSHHHHHTHHHHHHHSSE T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCC-CCEEE--EEEECCHHHHHHHHHHHHCCE T ss_conf 975675226687899999998749978996066876669999999996499-84289--965210244416778763668 Q ss_pred EEECHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCC--CCCCCC-EECCC-C Q ss_conf 8862057899999830143433331000013568899875302455430354113432323333--102532-12013-3 Q gi|254780653|r 217 LVIGGGMANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPT--QVVSAQ-SVPLD-S 292 (400) Q Consensus 217 iiigG~lantfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~--~~~~~~-~i~~~-~ 292 (400) |++.=|= .|.+++- ++.--..|.++.++.+.+.++++-+-..-+= ..+..+. ++.++. .+-++ + T Consensus 309 IMVARGD-------LgvEip~----e~vp~~QK~II~~c~~~gKPVIvATqmLeSM-i~~p~PTRAEvsDVaNAV~DGaD 376 (550) T 3gr4_A 309 IMVARGD-------LGIEIPA----EKVFLAQKMMIGRCNRAGKPVICATQMLESM-IKKPRPTRAEGSDVANAVLDGAD 376 (550) T ss_dssp EEEEHHH-------HHHHSCG----GGHHHHHHHHHHHHHHHTCCEEEESSTTGGG-GTCSSCCHHHHHHHHHHHHHTCS T ss_pred EEEECCC-------CCCCCCH----HHHHHHHHHHHHHHHHCCCEEEECCHHHHHH-HHCCCCCHHHHHHHHHHHHCCCC T ss_conf 9995566-------0112899----9999999999999987499289845767767-63899970678889989974983 Q ss_pred CCC--------CCCCHHHHHHHHHHCCCCEEEEECCCCCC---CCCCHHHHHHHHHHHHHHHHCC--CCCEEEE-CCCHH Q ss_conf 457--------65200356777640577679997662532---2743658899999999861114--8858997-48046 Q gi|254780653|r 293 IIL--------DVGFKTVEYIKQVIAQARTVMWNGPLGVF---EIEPFDRATVEVAHYVAKLTKE--RRIISIA-GGGDT 358 (400) Q Consensus 293 ~i~--------DIGp~Ti~~~~~~I~~AktI~WNGP~Gvf---E~~~F~~GT~~l~~~ia~~~~~--~~~~siv-GGGdT 358 (400) -+| .--.++++.+..++..+...+|.-+..-. ..+....=+.+++.+...+... ..++.++ --|.| T Consensus 377 avMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~~av~~A~~~~a~aIv~~T~sG~t 456 (550) T 3gr4_A 377 CIMLSGETAKGDYPLEAVRMQHLIAREAEAAIYHLQLFEELRRLAPITSDPTEATAVGAVEASFKCCSGAIIVLTKSGRS 456 (550) T ss_dssp EEEESHHHHTCSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHTTCSCEEEECSSSHH T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHH T ss_conf 79973552468677899999999999987230035667763225667888789999999999873799989998696599 Q ss_pred HHHHHHCCCCCCCCEEECC Q ss_conf 9989984887686468750 Q gi|254780653|r 359 ITALAHAGISNEFTYVSTA 377 (400) Q Consensus 359 ~aai~~~g~~~~~~hvSTg 377 (400) +..+.++--.-.+--++.- T Consensus 457 a~~iS~~RP~~PI~a~t~~ 475 (550) T 3gr4_A 457 AHQVARYRPRAPIIAVTRN 475 (550) T ss_dssp HHHHHTTCCSSCEEEEESC T ss_pred HHHHHHHCCCCCEEEECCC T ss_conf 9999955959988998998 No 28 >2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transferase, cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A* Probab=50.35 E-value=12 Score=16.69 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=35.9 Q ss_pred HCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 0159968999820167131857772589999889899999889809999137788 Q gi|254780653|r 11 RDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRP 65 (400) Q Consensus 11 ~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRP 65 (400) ..++||++.|.+.=|+ ++|+..+...+..|..|.+.|-++||. |=|+| T Consensus 45 ~~~~~k~iVIKlGGs~------l~d~~~~~~l~~dIa~L~~~G~~vVlV-hGgg~ 92 (321) T 2v5h_A 45 QQFAGRTVVVKYGGAA------MKQEELKEAVMRDIVFLACVGMRPVVV-HGGGP 92 (321) T ss_dssp HHTTTCEEEEEECTHH------HHSHHHHHHHHHHHHHHHHTTCEEEEE-ECCHH T ss_pred HHHCCCEEEEEECCHH------HCCHHHHHHHHHHHHHHHHCCCEEEEE-ECCCC T ss_conf 9858998999989078------359879999999999999879969999-58963 No 29 >3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} PDB: 2i54_A* 2i55_A* Probab=48.68 E-value=10 Score=17.24 Aligned_cols=24 Identities=13% Similarity=-0.010 Sum_probs=20.5 Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 99889899999889809999137788 Q gi|254780653|r 40 ERVVPTILELVEKKAKVVIFSHLGRP 65 (400) Q Consensus 40 ~~~~pTI~~l~~~~akvii~SH~GRP 65 (400) .+....|+.|.++|-.+++.| ||| T Consensus 24 ~~~~~ai~~l~~~g~~v~~~T--GR~ 47 (246) T 3f9r_A 24 DEMRALIKRARGAGFCVGTVG--GSD 47 (246) T ss_dssp HHHHHHHHHHHHTTCEEEEEC--SSC T ss_pred HHHHHHHHHHHHCCCEEEEEC--CCC T ss_conf 999999999996899999988--999 No 30 >3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, structural genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367} Probab=48.30 E-value=13 Score=16.48 Aligned_cols=25 Identities=16% Similarity=0.429 Sum_probs=16.7 Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 9889899999889809999137788 Q gi|254780653|r 41 RVVPTILELVEKKAKVVIFSHLGRP 65 (400) Q Consensus 41 ~~~pTI~~l~~~~akvii~SH~GRP 65 (400) ...+.|...+.+|.+++++|.-|-| T Consensus 76 ~~~~~i~~~l~~g~~v~l~sdaG~P 100 (296) T 3kwp_A 76 ERIPQLIAKLKQGMQIAQVSDAGMP 100 (296) T ss_dssp HHHHHHHHHHHTTCEEEEECSSBCT T ss_pred HHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 6799999999859978999769985 No 31 >2w9h_A DHFR, dihydrofolate reductase; NADP, trimethoprim, oxidoreductase, one-carbon metabolism; HET: TOP; 1.48A {Staphylococcus aureus} PDB: 2w9g_A* 3frd_X* 3fre_X* 3frf_X* 3fyv_X* 3fyw_X* 3frb_X* 3fra_X* 3fy8_X* 3fy9_X* 3fq0_A* 3f0b_X* 3f0s_X* 3f0q_X* 3fqc_A* 3fqz_A* 3m08_A* 3f0u_X* 3f0v_X* 3f0x_X* ... Probab=47.62 E-value=13 Score=16.41 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=19.3 Q ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEECH Q ss_conf 899960780255788998773068888620 Q gi|254780653|r 192 VAIVGGSKVSTKITLLINLVKKVDKLVIGG 221 (400) Q Consensus 192 v~IiGGaKisdKi~~i~~L~~k~D~iiigG 221 (400) +.|+||++ +.+.+++.+|++.+.= T Consensus 90 i~ViGG~~------iY~~~l~~~d~i~lT~ 113 (159) T 2w9h_A 90 VFIFGGQT------LFEEMIDKVDDMYITV 113 (159) T ss_dssp EEEEECHH------HHHHHTTTCSEEEEEE T ss_pred EEEECCHH------HHHHHHHHCCEEEEEE T ss_conf 68976689------9999886589999998 No 32 >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Probab=47.37 E-value=13 Score=16.43 Aligned_cols=33 Identities=6% Similarity=0.150 Sum_probs=14.2 Q ss_pred HCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHC Q ss_conf 0577679997662532274365889999999986111 Q gi|254780653|r 309 IAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTK 345 (400) Q Consensus 309 I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~ 345 (400) ..+++.+|+--|.+-.-. .+...+.+.+.+..+ T Consensus 79 ~~~~~~liLDEPt~~LD~----~~~~~l~~~l~~l~~ 111 (148) T 1f2t_B 79 AGEISLLILDEPTPYLDE----ERRRKLITIMERYLK 111 (148) T ss_dssp HSSCSEEEEESCSCTTCH----HHHHHHHHHHHHTGG T ss_pred CCCCCEEEEECCCCCCCH----HHHHHHHHHHHHHHH T ss_conf 579998998488665899----999999999999995 No 33 >1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* Probab=47.09 E-value=14 Score=16.36 Aligned_cols=36 Identities=14% Similarity=0.245 Sum_probs=30.6 Q ss_pred EECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC Q ss_conf 777258999988989999988980999913778889 Q gi|254780653|r 32 KVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQS 67 (400) Q Consensus 32 ~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg 67 (400) -++|+.++......|-.|.++|.+.|+++|=|+|.+ T Consensus 13 ~l~d~~~~~~~~~~Ia~l~~~g~~~vVvvhG~g~~~ 48 (258) T 1gs5_A 13 LLDSEEALERLFSALVNYRESHQRPLVIVHGGGCVV 48 (258) T ss_dssp GGGCHHHHHHHHHHHHHHHTTCCSCEEEEECCHHHH T ss_pred HCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHH T ss_conf 405989999999999999977997599987981777 No 34 >2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A Probab=46.01 E-value=14 Score=16.26 Aligned_cols=71 Identities=20% Similarity=0.131 Sum_probs=44.8 Q ss_pred HHHHHHHHHHHCCCEEE-EEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEC Q ss_conf 98898999998898099-99137788898473322478888764310133545666310255665531364648982 Q gi|254780653|r 41 RVVPTILELVEKKAKVV-IFSHLGRPQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILA 116 (400) Q Consensus 41 ~~~pTI~~l~~~~akvi-i~SH~GRPkg~~~~~~Sl~~v~~~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLL 116 (400) -..++++.|+++|..|+ ++++-.+|.++ .... ++.++.++ .+.++...++.-.+...+.++++++.=++.. T Consensus 11 ~~~~~l~~L~~~~~~i~~V~t~~~~~~~~-~~~~---~v~~~a~~-~~ip~~~~~~~~~~~~~~~l~~~~~dl~i~~ 82 (305) T 2bln_A 11 MGCLGIEALLAAGYEISAIFTHTDNPGEK-AFYG---SVARLAAE-RGIPVYAPDNVNHPLWVERIAQLSPDVIFSF 82 (305) T ss_dssp HHHHHHHHHHHTTCEEEEEECCCC-------CCC---CHHHHHHH-HTCCEECCSCCCSHHHHHHHHHTCCSEEEEE T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCC-CCCC---HHHHHHHH-CCCCEECCCCCCCHHHHHHHHHCCCCEEEEE T ss_conf 99999999997899889999089999887-8989---89999998-6998984598998999999983299999986 No 35 >3ma8_A Pyruvate kinase; parasitology, pyruvate kiase, glycol kinase, magnesium, transferase, structural genomi structural genomics consortium; HET: CIT; 2.64A {Cryptosporidium parvum} Probab=45.60 E-value=7.9 Score=17.91 Aligned_cols=306 Identities=17% Similarity=0.185 Sum_probs=143.3 Q ss_pred HHHHHHHHHHCCCEEEE--EECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH-H-----HHCCCCCE Q ss_conf 88989999988980999--9137788898473322478888764310133545666310255665-5-----31364648 Q gi|254780653|r 42 VVPTILELVEKKAKVVI--FSHLGRPQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQS-I-----ASLSEGGI 113 (400) Q Consensus 42 ~~pTI~~l~~~~akvii--~SH~GRPkg~~~~~~Sl~~v~~~l~~~l~~~V~fi~d~~g~~~~~~-i-----~~l~~g~i 113 (400) ...+|+.|+++|..+.= +||- .++ +-.-.+..+.+..+..++++|...-|.-|++.+.. + -.|+.|+. T Consensus 66 ~~~~l~~li~aG~~v~RiN~SHg-s~e---~~~~~i~~iR~~~~~~~~~~v~I~lDl~GpkiRtg~~~~~~~i~l~~G~~ 141 (534) T 3ma8_A 66 NVESLIGLIDKGMSVARLNFSHG-DHE---SHFKTLQNIREAAKARPHSTVGIMLDTKGPEIRTGMLEGGKPIELKAGQT 141 (534) T ss_dssp SHHHHHHHHHHTCCEEEEETTSS-CHH---HHHHHHHHHHHHHHHSTTSCCEEEEECCCSCCBBCCCSSSSCCCCCTTC- T ss_pred CHHHHHHHHHCCCCEEEEECCCC-CHH---HHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCEEEECCCCE T ss_conf 99999999987999999978999-999---99999999999998648994289995899864787627996588448999 Q ss_pred EECCHHHHCCC-C---CCCHHHHHHHHCCCCCEEEECCHHH---HC----------------CCCCCEEECCCC---CCC Q ss_conf 98242430343-2---1000246653124364247544044---01----------------137633302332---100 Q gi|254780653|r 114 ILAENVRFYSE-E---ERNDPDFVRMLSRNGDFYINDAFSV---SH----------------RAHASITGLSHL---LPS 167 (400) Q Consensus 114 lLLEN~Rf~~~-E---~~n~~~f~k~La~laDiyVnDAF~~---aH----------------R~haS~~gi~~~---lps 167 (400) +-|-.-.-..+ + .-+.+++.+.+..--.+|+.|.--. .- +++.++. +|.. +|. T Consensus 142 v~l~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~I~idDG~i~l~V~~~~~~~v~~~v~~~G~L~s~KgVn-ip~~~~~lp~ 220 (534) T 3ma8_A 142 LKITTDYSMLGNSECISCSYSLLPKSVQIGSTVLIADGSLSTQVLEIGDDFIVCKVLNSVTIGERKNMN-LPGCKVHLPI 220 (534) T ss_dssp -CEESCCSSCCCSSCEEBSCTTHHHHCCTTCEEEETTTTEEEEEEEECSSEEEEEECSCCCCCSSCBEE-CTTCCCCSCS T ss_pred EEEEECCCCCCCCCEEEECCHHHHHHCCCCCEEEEECCCEEEEEEEECCCEEEEEEECCEEECCCCEEE-ECCCCCCCCC T ss_conf 999948866898667851506767535789989993795489999964985999975254834885587-3554566654 Q ss_pred -------------------CCCHH---HHHHHHHHHHHCCCCCC------CEEEEEEECCHHHHHHH--HHHHHHCCCEE Q ss_conf -------------------03325---56577765331016678------71899960780255788--99877306888 Q gi|254780653|r 168 -------------------YIGRA---MQKELSMLESCFSESKK------PLVAIVGGSKVSTKITL--LINLVKKVDKL 217 (400) Q Consensus 168 -------------------~aG~l---~ekEi~~L~~~l~~~~~------P~v~IiGGaKisdKi~~--i~~L~~k~D~i 217 (400) +.+.. -.+.+..+.+++....+ +-+-|+ |||+++-.+ ++..++.+|.| T Consensus 221 ltekD~~di~~~a~~~~vD~valSFV~s~~Dv~~~r~~l~~~~~~~~~~~~~i~ii--aKIE~~~al~nldeI~~~sDgi 298 (534) T 3ma8_A 221 IGDKDRHDIVDFALKYNLDFIALSFVQNGADVQLCRQIISENTQYSNGIPSSIKII--SKIENLEGVINFDSICSESDGI 298 (534) T ss_dssp SCHHHHHHHHTTTTTTTCSEEEECSCCSHHHHHHHHHHHHHCCTTTTTCCCCCEEE--EEECSHHHHHTHHHHHHHSSEE T ss_pred CCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEH--HHHHCCHHHCCHHHHHCCCCEE T ss_conf 55462999999998759999999065707889999998875254323566331113--5332402110177661158689 Q ss_pred EECHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCC--CCCCCCCE-ECCCCCC Q ss_conf 86205789999983014343333100001356889987530245543035411343232333--31025321-2013345 Q gi|254780653|r 218 VIGGGMANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIP--TQVVSAQS-VPLDSII 294 (400) Q Consensus 218 iigG~lantfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~--~~~~~~~~-i~~~~~i 294 (400) ++.=|= .|.+++- ++.-...|.++.++.+.+.++++-+...-+=- .+..+ .++.++.. +-++--. T Consensus 299 mVaRGD-------Lg~ei~~----e~vp~~Qk~ii~~c~~~gkPvivATqmLeSM~-~~p~PTRAEvsDVanav~dGaD~ 366 (534) T 3ma8_A 299 MVARGD-------LGMEIPP----EKIFVAQKCMISKCNVAGKPVVTATQMLESMI-KSNRPTRAEMTDVANAVLDGSDC 366 (534) T ss_dssp EEEHHH-------HHHHSCH----HHHHHHHHHHHHHHHHHTCCEEEESSSSGGGG-TSSSCCHHHHHHHHHHHHHTCSE T ss_pred EEECCC-------CCCCCCH----HHHHHHHHHHHHHHHHCCCCEEEECCHHHHHH-HCCCCCCHHHHHHHHHHHCCCCE T ss_conf 997676-------3243898----89889999999999974992999880167787-48998607799999998646847 Q ss_pred C---------CCCCHHHHHHHHHHCCCCEEEEECCCCCC----------CCCCHHHHHHHHHHHHHHHHCCCCCEEEE-C Q ss_conf 7---------65200356777640577679997662532----------27436588999999998611148858997-4 Q gi|254780653|r 295 L---------DVGFKTVEYIKQVIAQARTVMWNGPLGVF----------EIEPFDRATVEVAHYVAKLTKERRIISIA-G 354 (400) Q Consensus 295 ~---------DIGp~Ti~~~~~~I~~AktI~WNGP~Gvf----------E~~~F~~GT~~l~~~ia~~~~~~~~~siv-G 354 (400) + .--.++++.+..++.+++.-+|--...-. -.+..+.+..++++.+ ..+++.+. = T Consensus 367 vmLs~ETA~G~~P~e~V~~~~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~eaia~aAv~lA~~l-----~AkaIVv~T~ 441 (534) T 3ma8_A 367 VMLSGETANGAFPFDAVNVMSRVCAQAETCIDYPVLYHAIHSSVPKPVAVPEAIACSAVESAHDV-----NAKLIITITE 441 (534) T ss_dssp EEESHHHHTCSCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHH-----TCSEEEEECS T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC-----CCCEEEEECC T ss_conf 98724314677989999999999999986444666776654215788888999999999997247-----9888999879 Q ss_pred CCHHHHHHHHCCCCCCC Q ss_conf 80469989984887686 Q gi|254780653|r 355 GGDTITALAHAGISNEF 371 (400) Q Consensus 355 GGdT~aai~~~g~~~~~ 371 (400) -|.|+..+.++--.-.+ T Consensus 442 SG~TAr~ISr~RP~~PI 458 (534) T 3ma8_A 442 TGNTARLISKYRPSQTI 458 (534) T ss_dssp SSHHHHHHHHTCCSSEE T ss_pred CCHHHHHHHHHCCCCCE T ss_conf 82899999955979988 No 36 >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* Probab=44.58 E-value=15 Score=16.12 Aligned_cols=125 Identities=10% Similarity=0.146 Sum_probs=61.7 Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCC-CCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCHHH-HH-----HHHCCCCCEE Q ss_conf 332247888876431013354566-6310255665531364648982424303432100024-66-----5312436424 Q gi|254780653|r 71 KDCSLFKVVSIAESILHKNILFVN-DCIGSTLSQSIASLSEGGIILAENVRFYSEEERNDPD-FV-----RMLSRNGDFY 143 (400) Q Consensus 71 ~~~Sl~~v~~~l~~~l~~~V~fi~-d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n~~~-f~-----k~La~laDiy 143 (400) +..|+..++.++.+ -|.+|.++. |++-..+.++.+.+.. .-++-|+..+...|+. .+ .....-.|+- T Consensus 142 KTTt~aKlA~~~~~-~g~kv~l~~~Dt~R~aA~eQL~~~a~-----~~~v~~~~~~~~~d~~~v~~~a~~~a~~~~~D~v 215 (328) T 3e70_C 142 KTTTIAKLANWLKN-HGFSVVIAASDTFRAGAIEQLEEHAK-----RIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVV 215 (328) T ss_dssp HHHHHHHHHHHHHH-TTCCEEEEEECCSSTTHHHHHHHHHH-----HTTCEEECCCTTCCHHHHHHHHHHHHHHHTCSEE T ss_pred CCCHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHH-----HHCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEE T ss_conf 65438999999996-69960576323245079999999988-----7357614678999999999999999998699989 Q ss_pred EECCHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHC--CCEEEE Q ss_conf 7544044011376333023321000332556577765331016678718999607802557889987730--688886 Q gi|254780653|r 144 INDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKK--VDKLVI 219 (400) Q Consensus 144 VnDAF~~aHR~haS~~gi~~~lps~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k--~D~iii 219 (400) +-|--|.+|++. .+..|+..+.++. +|.. .+.++-+..=.+-+..+..+.+. .+.+++ T Consensus 216 lIDTaGR~~~~~----------------~l~~el~~i~~~~-~p~~-~llV~da~~g~~~~~~~~~f~~~~~~~g~Il 275 (328) T 3e70_C 216 LIDTAGRSETNR----------------NLMDEMKKIARVT-KPNL-VIFVGDALAGNAIVEQARQFNEAVKIDGIIL 275 (328) T ss_dssp EEEECCSCCTTT----------------CHHHHHHHHHHHH-CCSE-EEEEEEGGGTTHHHHHHHHHHHHSCCCEEEE T ss_pred EECCCCCCCCCH----------------HHHHHHHHHHHHC-CCCE-EEEECCCCCCHHHHHHHHHHHHCCCCCEEEE T ss_conf 867877761309----------------9999999999762-9974-7762342122899999999862289986999 No 37 >2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A Probab=43.93 E-value=4.1 Score=19.71 Aligned_cols=45 Identities=13% Similarity=0.042 Sum_probs=29.2 Q ss_pred CCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH Q ss_conf 85777258999988989999988980999913778889847332247888876 Q gi|254780653|r 30 DGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIA 82 (400) Q Consensus 30 ~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l 82 (400) ||++.|+..-..+...|+.|.++|.++++.| ||| ..++.+.++.+ T Consensus 10 DGTLl~~~~~~~~~~al~~l~~~G~~v~iaT--GR~------~~~~~~~~~~l 54 (249) T 2zos_A 10 DKTLIPGYEPDPAKPIIEELKDMGFEIIFNS--SKT------RAEQEYYRKEL 54 (249) T ss_dssp STTTCTTSCSGGGHHHHHHHHHTTEEEEEBC--SSC------HHHHHHHHHHH T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCEEEEEE--CCC------HHHHHHHHHHH T ss_conf 8767799988899999999998799899993--888------99999999983 No 38 >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* Probab=43.25 E-value=16 Score=15.99 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=29.4 Q ss_pred HCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEEC Q ss_conf 015996899982016713185777258999988989999988980999913 Q gi|254780653|r 11 RDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSH 61 (400) Q Consensus 11 ~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH 61 (400) -|++||+||| +..|++ +..-++.|++.||+|.++|. T Consensus 8 l~l~~~~vlv-------vGgG~v--------A~rK~~~ll~~ga~v~via~ 43 (457) T 1pjq_A 8 CQLRDRDCLI-------VGGGDV--------AERKARLLLEAGARLTVNAL 43 (457) T ss_dssp ECCBTCEEEE-------ECCSHH--------HHHHHHHHHHTTBEEEEEES T ss_pred EECCCCEEEE-------ECCCHH--------HHHHHHHHHHCCCEEEEECC T ss_conf 9828983999-------899899--------99999999878987999938 No 39 >3khd_A Pyruvate kinase; malaria, structural genomics, structural genomics consortium, SGC; 2.70A {Plasmodium falciparum 3D7} Probab=43.22 E-value=11 Score=16.99 Aligned_cols=303 Identities=15% Similarity=0.164 Sum_probs=142.5 Q ss_pred HHHHHHHHHHCCCEEEEE--ECCCCCCCCCCCCCCH-HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCH Q ss_conf 889899999889809999--1377888984733224-7888876431013354566631025566553136464898242 Q gi|254780653|r 42 VVPTILELVEKKAKVVIF--SHLGRPQSKSDKDCSL-FKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAEN 118 (400) Q Consensus 42 ~~pTI~~l~~~~akvii~--SH~GRPkg~~~~~~Sl-~~v~~~l~~~l~~~V~fi~d~~g~~~~~~i~~l~~g~ilLLEN 118 (400) ...+|+.|+++|..+.=+ ||- .. +....+ ..+.+..+..++++|...-|.-|++.+ +..++++++.|-+| T Consensus 60 ~~e~l~~li~aG~dv~RiN~SHg-~~----e~~~~~i~~ir~~~~~~~~~~v~Il~Dl~GpkiR--tg~~~~~~i~l~~G 132 (520) T 3khd_A 60 SVETLVKLIDAGMDICRFNFSHG-SH----EDHKEMFNNVLKAQELRPNCLLGMLLDTKGPEIR--TGFLKNKEVHLKEG 132 (520) T ss_dssp SHHHHHHHHHHTEEEEEEETTSS-CH----HHHHHHHHHHHHHHHHCSSCCCEEEEECCCCCEE--BCEEC--------- T ss_pred CHHHHHHHHHCCCCEEEEECCCC-CH----HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEE--EEECCCCCEEECCC T ss_conf 99999999986999999989999-99----9999999999999874589933899978898447--87537983896689 Q ss_pred HHH--CCC-CC--------CCHHHHHHHHCCCCCEEEECCHH---HHCC----------------CCCCEEECCCC---C Q ss_conf 430--343-21--------00024665312436424754404---4011----------------37633302332---1 Q gi|254780653|r 119 VRF--YSE-EE--------RNDPDFVRMLSRNGDFYINDAFS---VSHR----------------AHASITGLSHL---L 165 (400) Q Consensus 119 ~Rf--~~~-E~--------~n~~~f~k~La~laDiyVnDAF~---~aHR----------------~haS~~gi~~~---l 165 (400) -++ ..+ |. -+.+++.+.+..--.+|+.|.-- +--. ++-++ -+|.. + T Consensus 133 ~~v~l~~~~~~~~~~~~i~v~~~~l~~~vk~Gd~I~idDG~i~l~V~~~~~~~i~~~V~~gG~L~s~Kgv-n~p~~~~~~ 211 (520) T 3khd_A 133 SKLKLVTDYEFLGDETCIACSYKKLPQSVKPGNIILIADGSVSCKVLETHEDHVITEVLNSAVIGERKNM-NLPNVKVDL 211 (520) T ss_dssp --CEEESCTTCEECTTEEEBSCTTHHHHCCC-CEEEETTTTEEEEEEEECSSCEEEEECC-CCCCSSCEE-ECTTSCCCS T ss_pred CEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCEEEEECCCCEEEEEECCCCEEEEEEEECCEECCCCEE-ECCCCCCCC T ss_conf 9999985886689865686224432233799988998478626999970588069999328684688558-505765577 Q ss_pred CC-------------------CCCHH---HHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHH--HHHHHHCCCEEEECH Q ss_conf 00-------------------03325---5657776533101667871899960780255788--998773068888620 Q gi|254780653|r 166 PS-------------------YIGRA---MQKELSMLESCFSESKKPLVAIVGGSKVSTKITL--LINLVKKVDKLVIGG 221 (400) Q Consensus 166 ps-------------------~aG~l---~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~--i~~L~~k~D~iiigG 221 (400) |. +.+.. -.+++..+.+++.+.. +.+-|+ |||.++-.+ ++.+++.+|.|++.= T Consensus 212 ~~ltekd~~~~~~~a~~~~vD~ialSfV~s~~di~~~r~~l~~~g-~~~~Ii--aKIE~~~al~nl~eI~~~sDgimIaR 288 (520) T 3khd_A 212 PIISEKDKNDILNFAIPMGCNFIAASFIQSADDVRLIRNLLGPRG-RHIKII--PKIENIEGIIHFDKILAESDGIMIAR 288 (520) T ss_dssp CSSCHHHHHHHHHTHHHHTCCEEEETTCCSHHHHHHHHHHHTTTT-TTSEEE--EEECSHHHHHTHHHHHHHSSCEEECH T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCC-CCEEEE--EEEHHHHHHHHHHHHHHCCCEEEEEC T ss_conf 766500399999999874998675337785677899999999759-840125--42122776650677885088899988 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCC--CCCCCCE-ECCCCCC---- Q ss_conf 57899999830143433331000013568899875302455430354113432323333--1025321-2013345---- Q gi|254780653|r 222 GMANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPT--QVVSAQS-VPLDSII---- 294 (400) Q Consensus 222 ~lantfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~--~~~~~~~-i~~~~~i---- 294 (400) | -.|.++|- ++.-...+.++.++.+.+.++++-+...-+- ..+..|. ++.++.. +-++--. T Consensus 289 G-------DLg~e~~~----e~vp~~Qk~Ii~~~~~~~kPvivATqmLeSM-~~~p~PTRAEv~Dvanav~dG~D~vmLs 356 (520) T 3khd_A 289 G-------DLGMEISP----EKVFLAQKLMISKCNLQGKPIITATQMLESM-TKNPRPTRAEVTDVANAVLDGTDCVMLS 356 (520) T ss_dssp H-------HHTTTSCG----GGHHHHHHHHHHHHHHHTCCEEECCCCCGGG-GTCSSCCHHHHHHHHHHHHHTCSEEEES T ss_pred C-------CCCCCCCH----HHHHHHHHHHHHHHHHCCCCEEEECHHHHHH-HHCCCCCCHHHHHHHHHHHCCCCEEEEC T ss_conf 8-------50201899----8956989999999997299699987689988-6288775334787888876267479973 Q ss_pred -----CCCCCHHHHHHHHHHCCCCEEEEECCCCC---CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEC---CCHHHHHHH Q ss_conf -----76520035677764057767999766253---2274365889999999986111488589974---804699899 Q gi|254780653|r 295 -----LDVGFKTVEYIKQVIAQARTVMWNGPLGV---FEIEPFDRATVEVAHYVAKLTKERRIISIAG---GGDTITALA 363 (400) Q Consensus 295 -----~DIGp~Ti~~~~~~I~~AktI~WNGP~Gv---fE~~~F~~GT~~l~~~ia~~~~~~~~~sivG---GGdT~aai~ 363 (400) =.--.++++.+.+++..|+..+|....-- .+.+....-+.+++.+......+.++-.||. -|.|+..+. T Consensus 357 ~ETa~G~~P~~~V~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aIa~aA~~lA~~l~akaIVv~T~SG~TAr~vS 436 (520) T 3khd_A 357 GETAGGKFPVEAVTIMSKICLEAEACIDYKLLYQSLVNAIETPISVQEAVARSAVETAESIQASLIIALTETGYTARLIA 436 (520) T ss_dssp HHHHSCSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSHHHHHHH T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH T ss_conf 56568868999999999999999834433455676541145775379999999999987469999999889858999999 Q ss_pred HCCC Q ss_conf 8488 Q gi|254780653|r 364 HAGI 367 (400) Q Consensus 364 ~~g~ 367 (400) ++-- T Consensus 437 r~RP 440 (520) T 3khd_A 437 KYKP 440 (520) T ss_dssp HTCC T ss_pred HHCC T ss_conf 5497 No 40 >1xpj_A Hypothetical protein; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics, unknown function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18 Probab=42.87 E-value=16 Score=15.95 Aligned_cols=30 Identities=13% Similarity=0.024 Sum_probs=25.0 Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCCCC Q ss_conf 899998898999998898099991377888 Q gi|254780653|r 37 TRIERVVPTILELVEKKAKVVIFSHLGRPQ 66 (400) Q Consensus 37 ~RI~~~~pTI~~l~~~~akvii~SH~GRPk 66 (400) .=+...+.+|+.|.+.|.+|+|.|+-|... T Consensus 24 ~P~~~~Ie~i~~l~~~G~~Iii~TaR~~~~ 53 (126) T 1xpj_A 24 LPRLDVIEQLREYHQLGFEIVISTARNMRT 53 (126) T ss_dssp CBCHHHHHHHHHHHHTTCEEEEEECTTTTT T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCCCCC T ss_conf 958999999999997899899997774334 No 41 >3k35_A Mono-ADP-ribosyltransferase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, structural genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens} Probab=41.81 E-value=16 Score=15.84 Aligned_cols=57 Identities=14% Similarity=0.101 Sum_probs=34.7 Q ss_pred CCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC Q ss_conf 7871899960780255788998773068888620578999998301434333310000135688998753024554 Q gi|254780653|r 188 KKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEII 263 (400) Q Consensus 188 ~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~ 263 (400) -||-++-.|-+=-+..+......++++|-+|+-| .|+. +.-+..+...+.+++.+++ T Consensus 181 lrP~VV~FgE~lp~~~~~~~~~~~~~aDllIvvG---------------TSl~----V~pa~~l~~~a~~~g~~vi 237 (318) T 3k35_A 181 LRDTILDWEDSLPDRDLALADEASRNADLSITLG---------------TSLQ----IRPSGNLPLATKRRGGRLV 237 (318) T ss_dssp EEECCCCTTCCCCHHHHHHHHHHHHTCSEEEEES---------------CCCC----STTGGGHHHHHHHTTCEEE T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEC---------------CCCE----ECCHHHHHHHHHHCCCEEE T ss_conf 6897201467788899999999985799999979---------------8877----8777479999996499599 No 42 >1ii8_B RAD50 ABC-ATPase; MRE11, DNA double-strand break repair, replication; 3.02A {Pyrococcus furiosus} SCOP: c.37.1.12 Probab=41.44 E-value=17 Score=15.81 Aligned_cols=44 Identities=5% Similarity=0.119 Sum_probs=26.3 Q ss_pred HHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEC Q ss_conf 640577679997662532274365889999999986111488589974 Q gi|254780653|r 307 QVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAG 354 (400) Q Consensus 307 ~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~~~~~~sivG 354 (400) -.+.++...|+--|.+..-. .+...+.+.+.+..++...+-+|- T Consensus 103 ~l~~~~~~lilDEPt~~LD~----~~~~~l~~~l~~l~~~~~tiiviS 146 (174) T 1ii8_B 103 YLAGEISLLILDEPTPYLDE----ERRRKLITIMERYLKKIPQVILVS 146 (174) T ss_dssp HHHSSCSEEEEECCSSSSCS----HHHHHHHHHHHHTGGGSSEEEEEE T ss_pred HHCCCCCEEEECCCCCCCCH----HHHHHHHHHHHHHHHCCCEEEEEE T ss_conf 85689988986598667699----999999999999995699899995 No 43 >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* Probab=40.78 E-value=17 Score=15.74 Aligned_cols=78 Identities=13% Similarity=0.137 Sum_probs=50.0 Q ss_pred HHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHHHHH Q ss_conf 653310166787189996078025578899877306888862057899999830143433--331000013568899875 Q gi|254780653|r 179 MLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRS--LCQRDFSDNVHQIAWEAK 256 (400) Q Consensus 179 ~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~S--l~e~~~~~~ak~i~~~a~ 256 (400) .++.+.+...++.+++ +..|.+..++.+++.+|.|++-+ .+.|.+ .+.++.++.++++.+... T Consensus 98 ~i~~i~~~g~~~Gial----np~T~~~~i~~~l~~~D~vl~M~-----------V~pG~~Gq~f~~~~l~ki~~l~~~~~ 162 (231) T 3ctl_A 98 LIDEIRRHDMKVGLIL----NPETPVEAMKYYIHKADKITVMT-----------VDPGFAGQPFIPEMLDKLAELKAWRE 162 (231) T ss_dssp HHHHHHHTTCEEEEEE----CTTCCGGGGTTTGGGCSEEEEES-----------SCTTCSSCCCCTTHHHHHHHHHHHHH T ss_pred HHHHHHHCCCEEEEEE----CCCCCHHHHHHHHCCCCEEEEEE-----------ECCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 9999997798799995----69997056552313328899957-----------76887875325889999999999998 Q ss_pred HCCCCCCCEEEEECC Q ss_conf 302455430354113 Q gi|254780653|r 257 RSACEIIVPRDVVVA 271 (400) Q Consensus 257 ~~~~~I~lP~D~~v~ 271 (400) +++.++.+-+|--+. T Consensus 163 ~~~~~~~I~VDGGIn 177 (231) T 3ctl_A 163 REGLEYEIEVDGSCN 177 (231) T ss_dssp HHTCCCEEEEESCCS T ss_pred HCCCCCEEEEECCCC T ss_conf 349993699989988 No 44 >2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme., structural genomics; 1.70A {Escherichia coli O157} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A* Probab=40.76 E-value=17 Score=15.74 Aligned_cols=46 Identities=15% Similarity=0.212 Sum_probs=27.7 Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCC-CCCCCCCCCHHHHHHHHHHHC Q ss_conf 99889899999889809999137788-898473322478888764310 Q gi|254780653|r 40 ERVVPTILELVEKKAKVVIFSHLGRP-QSKSDKDCSLFKVVSIAESIL 86 (400) Q Consensus 40 ~~~~pTI~~l~~~~akvii~SH~GRP-kg~~~~~~Sl~~v~~~l~~~l 86 (400) ..+.++|+.|-++|.+++++|++.-. ++.. ....+..+...+.+.+ T Consensus 45 pgv~e~L~~L~~~g~~i~ivTnq~~i~~~~~-~~~~~~~~~~~~~~~l 91 (176) T 2fpr_A 45 PGVIPQLLKLQKAGYKLVMITNQDGLGTQSF-PQADFDGPHNLMMQIF 91 (176) T ss_dssp TTHHHHHHHHHHTTEEEEEEEECTTTTBTTB-CHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHCCCEEEEEECCCCCCCCHH-HHHHHHHHHHHHHHHH T ss_conf 5589999999875985999958974444240-5999999999999876 No 45 >3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* Probab=39.82 E-value=18 Score=15.65 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=19.2 Q ss_pred CEECCCCCCCCCCCHHHHHHHHHHCC-CCEEEEECC Q ss_conf 21201334576520035677764057-767999766 Q gi|254780653|r 286 QSVPLDSIILDVGFKTVEYIKQVIAQ-ARTVMWNGP 320 (400) Q Consensus 286 ~~i~~~~~i~DIGp~Ti~~~~~~I~~-AktI~WNGP 320 (400) ++.+..| +.||--+-.+...+.|.+ |...+|.|. T Consensus 322 d~~~~~w-~~~~~~~~~~~~~~lig~Ga~a~Vy~~~ 356 (540) T 3en9_A 322 DMVEVNW-IKEIKGKKRKIPEHLIGKGAEADIKRDS 356 (540) T ss_dssp TTSCCCC-C------------------CCEEEEEEE T ss_pred CCCCCCH-HCCCCCCCCCCCHHHHCCCCEEEEEEEE T ss_conf 2130441-0057654457737662567638999999 No 46 >3ix9_A Dihydrofolate reductase; central beta sheet surrounded by 4 alpha helices, oxidoreductase; HET: NDP MTX; 1.95A {Streptococcus pneumoniae} Probab=39.79 E-value=15 Score=16.04 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=19.3 Q ss_pred EEEEEEECCHHHHHHHHHHHHHCCCEEEECH Q ss_conf 1899960780255788998773068888620 Q gi|254780653|r 191 LVAIVGGSKVSTKITLLINLVKKVDKLVIGG 221 (400) Q Consensus 191 ~v~IiGGaKisdKi~~i~~L~~k~D~iiigG 221 (400) -+.|+||+.|= +.+++.+|.|++.= T Consensus 116 ~i~VIGG~~IY------~~~l~~~d~i~lT~ 140 (190) T 3ix9_A 116 NLYIVGGKQIF------QAFEPYLDEVIVTH 140 (190) T ss_dssp CEEEEECHHHH------HHHGGGCSEEEEEE T ss_pred EEEEECCHHHH------HHHHHHCCEEEEEE T ss_conf 39996568999------99998799999999 No 47 >1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomics; 1.60A {Pyrococcus horikoshii OT3} SCOP: c.108.1.10 Probab=39.75 E-value=12 Score=16.73 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=24.1 Q ss_pred CCEECCHH-HH-HHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 85777258-99-99889899999889809999137788 Q gi|254780653|r 30 DGKVADVT-RI-ERVVPTILELVEKKAKVVIFSHLGRP 65 (400) Q Consensus 30 ~g~I~d~~-RI-~~~~pTI~~l~~~~akvii~SH~GRP 65 (400) ||+++++. +| .+...+|+.|.++|.++++.| ||| T Consensus 11 DGTL~~~~~~i~~~~~~al~~l~~~G~~v~~~T--GR~ 46 (231) T 1wr8_A 11 DGTITYPNRMIHEKALEAIRRAESLGIPIMLVT--GNT 46 (231) T ss_dssp TTTTBCTTSCBCHHHHHHHHHHHHTTCCEEEEC--SSC T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEC--CCC T ss_conf 767735969329999999999997799899988--996 No 48 >3niw_A Haloacid dehalogenase-like hydrolase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Bacteroides thetaiotaomicron} Probab=38.62 E-value=16 Score=15.88 Aligned_cols=34 Identities=32% Similarity=0.587 Sum_probs=24.9 Q ss_pred CCEEC-CHHHH-HHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 85777-25899-99889899999889809999137788 Q gi|254780653|r 30 DGKVA-DVTRI-ERVVPTILELVEKKAKVVIFSHLGRP 65 (400) Q Consensus 30 ~g~I~-d~~RI-~~~~pTI~~l~~~~akvii~SH~GRP 65 (400) ||+++ ++.+| ...+..|+.|.++|-++++.| ||| T Consensus 13 DGTL~~~~~~i~~~~~~al~~l~~~g~~v~i~T--GR~ 48 (279) T 3niw_A 13 DGTLTNSKKEISSRNRETLIRIQEQGIRLVLAS--GRP 48 (279) T ss_dssp CCCCSCTTSCCCHHHHHHHHHHHHTTCEEEEEC--SSC T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEC--CCC T ss_conf 877738959339999999999997899999999--998 No 49 >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, biosynthetic protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Probab=38.22 E-value=19 Score=15.49 Aligned_cols=96 Identities=21% Similarity=0.216 Sum_probs=54.5 Q ss_pred CCCCHHHHCCCCCEEEEEEECCCCCC-CCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCC--------CCCCCCCCCC Q ss_conf 87710100159968999820167131-85777258999988989999988980999913778--------8898473322 Q gi|254780653|r 4 LRTMNDLRDIRGLRCLLRVDWNVPFI-DGKVADVTRIERVVPTILELVEKKAKVVIFSHLGR--------PQSKSDKDCS 74 (400) Q Consensus 4 ~~ti~d~~d~~gk~VlvRvD~NvPi~-~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GR--------Pkg~~~~~~S 74 (400) |+-.++. ++.|+|||| .. .|-| -....+.|+++|.+|+++--+.| -+ ......+ T Consensus 1 ~~~~~~~-~~~g~kILV-------TG~tGfI--------G~~l~~~Ll~~G~~V~~iD~l~~~~~~~~~~~~-~~~~~~~ 63 (404) T 1i24_A 1 MRGSHHH-HHHGSRVMV-------IGGDGYC--------GWATALHLSKKNYEVCIVDNLVRRLFDHQLGLE-SLTPIAS 63 (404) T ss_dssp ------------CEEEE-------ETTTSHH--------HHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCC-CSSCCCC T ss_pred CCCCCCC-CCCCCEEEE-------ECCCCHH--------HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC-CCCCCCC T ss_conf 9887678-999998999-------8998689--------999999999784989999467765321102212-1343321 Q ss_pred HHHHHHHHHHHCCCCCCCCC-CCCHHHH-HHHHHHCCCCCEEEC Q ss_conf 47888876431013354566-6310255-665531364648982 Q gi|254780653|r 75 LFKVVSIAESILHKNILFVN-DCIGSTL-SQSIASLSEGGIILA 116 (400) Q Consensus 75 l~~v~~~l~~~l~~~V~fi~-d~~g~~~-~~~i~~l~~g~ilLL 116 (400) .....+..+.+.+.++.|+. |+..... .+.++..++-.|+-+ T Consensus 64 ~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~d~ViH~ 107 (404) T 1i24_A 64 IHDRISRWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHF 107 (404) T ss_dssp HHHHHHHHHHHHCCCCEEEESCTTSHHHHHHHHHHHCCSEEEEC T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEC T ss_conf 47777777751378727998437899999999985699789985 No 50 >2w3w_A Dihydrofolate reductase; nonclassical antifolates, one-carbon metabolism, lipophilic antifolates, NADP, oxidoreductase; HET: VG9 NDP; 1.60A {Mycobacterium avium} PDB: 2w3v_A* Probab=37.41 E-value=16 Score=16.00 Aligned_cols=24 Identities=8% Similarity=0.283 Sum_probs=18.4 Q ss_pred EEEEEEECCHHHHHHHHHHHHHCCCEEEEC Q ss_conf 189996078025578899877306888862 Q gi|254780653|r 191 LVAIVGGSKVSTKITLLINLVKKVDKLVIG 220 (400) Q Consensus 191 ~v~IiGGaKisdKi~~i~~L~~k~D~iiig 220 (400) -+.|+||+++ .+.+++.+|.+.+. T Consensus 98 ~i~IiGG~~I------Y~~~l~~~d~l~iT 121 (167) T 2w3w_A 98 APWVIGGAQI------YLLALPHATRCEVT 121 (167) T ss_dssp SCEEEECHHH------HHHHGGGCSEEEEE T ss_pred EEEEECCHHH------HHHHHHHCCEEEEE T ss_conf 6999824999------99999768999999 No 51 >3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum} Probab=37.27 E-value=19 Score=15.39 Aligned_cols=59 Identities=20% Similarity=0.105 Sum_probs=26.2 Q ss_pred HHHHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCCCCCH---HHHHHHHHHHCCCCCCCCCCC Q ss_conf 8999988989999988-98099991377888984733224---788887643101335456663 Q gi|254780653|r 37 TRIERVVPTILELVEK-KAKVVIFSHLGRPQSKSDKDCSL---FKVVSIAESILHKNILFVNDC 96 (400) Q Consensus 37 ~RI~~~~pTI~~l~~~-~akvii~SH~GRPkg~~~~~~Sl---~~v~~~l~~~l~~~V~fi~d~ 96 (400) .-.+...+.++.++++ +-++-=++....+.|..- ..+| ...++.|+-.++.|+.-++.. T Consensus 51 ~H~~~l~~~i~~~l~~a~i~~~~id~ia~t~gPGl-~~~l~vG~~~Ak~la~~~~~Pli~v~Hl 113 (334) T 3eno_A 51 HHSEVIDTVISRALEKAKISIHDIDLIGFSMGPGL-APSLRVTATAARTISVLTGKPIIGVNHP 113 (334) T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSSSC-HHHHHHHHHHHHHHHHHHTCCCEEECHH T ss_pred HHHHHHHHHHHHHHHHCCCCHHHCCEEEECCCCCC-CCCCCHHHHHHHHHHHHCCCCCCCCCHH T ss_conf 99999999999999974986433026884357873-2242067999999887426784523518 No 52 >2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown function, NPPSFA; 2.60A {Thermus thermophilus HB8} Probab=36.70 E-value=16 Score=15.89 Aligned_cols=46 Identities=11% Similarity=0.023 Sum_probs=25.2 Q ss_pred HHHHHHHHHHHCCCEEEEEEC--CCCCCCCCCCCCCHHHHHHHHHHHCCCCCC Q ss_conf 988989999988980999913--778889847332247888876431013354 Q gi|254780653|r 41 RVVPTILELVEKKAKVVIFSH--LGRPQSKSDKDCSLFKVVSIAESILHKNIL 91 (400) Q Consensus 41 ~~~pTI~~l~~~~akvii~SH--~GRPkg~~~~~~Sl~~v~~~l~~~l~~~V~ 91 (400) ....+|+...++|+..||.=| +-+|... .+ .+..+.+++++...|. T Consensus 45 ~t~~vi~~Ai~~g~dlIItHHP~~f~~~~~----~~-~~~~~~i~~li~~~I~ 92 (242) T 2yyb_A 45 AGEAIFRKALEEEVDFLIVHHGLFWGKPFP----IV-GHHKRRLETLFQGGIN 92 (242) T ss_dssp CSHHHHHHHHHTTCSEEEEEECSCSSCCCC----SC-HHHHHHHHHHHHTTCE T ss_pred CCHHHHHHHHHCCCCEEEECCCCCCCCCCC----CC-CCHHHHHHHHHHCCCC T ss_conf 999999999987999999798501047654----45-6079999999978961 No 53 >2wdc_A SOXB, sulfur oxidation protein SOXB; sulfur-sulfur hydrolysis, sulfur oxidation pathway, Cys S-thiosulfonate, hydrolase; 1.50A {Thermus thermophilus} PDB: 2wdd_A* 2wde_A 2wdf_A Probab=35.71 E-value=20 Score=15.24 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=12.2 Q ss_pred HHHHHHHHHHHHHCCCE-EEEEECCCC Q ss_conf 99988989999988980-999913778 Q gi|254780653|r 39 IERVVPTILELVEKKAK-VVIFSHLGR 64 (400) Q Consensus 39 I~~~~pTI~~l~~~~ak-vii~SH~GR 64 (400) +.+.-..++.|.++|+. ||++||+|. T Consensus 240 ~~~~~~~v~~lr~~g~DvIV~LsH~G~ 266 (562) T 2wdc_A 240 ERRLQEAVDKARAEGANAVVLLSHNGM 266 (562) T ss_dssp HHHHHHHHHHHHHTTCSEEEEEECSCH T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 999999999987538988999605785 No 54 >3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A Probab=35.54 E-value=21 Score=15.22 Aligned_cols=29 Identities=7% Similarity=0.056 Sum_probs=16.2 Q ss_pred ECCHHHHCCCC---------CCEEECCCCCCC-------CCCHHH Q ss_conf 54404401137---------633302332100-------033255 Q gi|254780653|r 145 NDAFSVSHRAH---------ASITGLSHLLPS-------YIGRAM 173 (400) Q Consensus 145 nDAF~~aHR~h---------aS~~gi~~~lps-------~aG~l~ 173 (400) ||.+.+||+-+ -.++|+|+-... +.||-= T Consensus 114 dgS~~~a~~L~~~~~~~~~~i~vIgIPKTIDNDl~~tD~t~GF~T 158 (419) T 3hno_A 114 GDSADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITDCCPGFGS 158 (419) T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEEECCTTCCCSSSSSCTTHHH T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEECCCCHHH T ss_conf 078999999999999708994189612432578776332764788 No 55 >1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A Probab=35.50 E-value=17 Score=15.80 Aligned_cols=24 Identities=17% Similarity=0.488 Sum_probs=18.7 Q ss_pred EEEEEEECCHHHHHHHHHHHHHCCCEEEEC Q ss_conf 189996078025578899877306888862 Q gi|254780653|r 191 LVAIVGGSKVSTKITLLINLVKKVDKLVIG 220 (400) Q Consensus 191 ~v~IiGGaKisdKi~~i~~L~~k~D~iiig 220 (400) -+.|+||+.+ .+.+++.+|.+.+. T Consensus 96 ~I~ViGG~~I------y~~~l~~~dei~iT 119 (162) T 1vdr_A 96 TAYVIGGAAI------YALFQPHLDRMVLS 119 (162) T ss_dssp CEEEEECHHH------HHHHGGGCSEEEEE T ss_pred EEEEECCHHH------HHHHHHHCCEEEEE T ss_conf 6999877899------99998743857999 No 56 >3dau_A Dihydrofolate reductase; oxidoreductase, pseudo-rossmann fold, adenine nucleotide binding domain, antibiotic resistance; HET: MTX NAP; 1.50A {Escherichia coli K12} PDB: 1ddr_A* 1dds_A* 3k74_A 1ra9_A* 1dre_A* 1drh_A* 1dyi_A* 1dyh_A* 1jol_A* 1jom_A* 1ra1_A* 1dyj_A* 1ra3_A* 1ra8_A* 1ra2_A* 1rb2_A* 1rb3_A* 1rc4_A* 1rd7_A* 1re7_A* ... Probab=34.79 E-value=18 Score=15.67 Aligned_cols=26 Identities=27% Similarity=0.576 Sum_probs=20.5 Q ss_pred CEEEEEEECCHHHHHHHHHHHHHCCCEEEECH Q ss_conf 71899960780255788998773068888620 Q gi|254780653|r 190 PLVAIVGGSKVSTKITLLINLVKKVDKLVIGG 221 (400) Q Consensus 190 P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG 221 (400) +-+.|+||+.+ .+.+++.+|.+.++= T Consensus 89 ~~v~viGG~~i------Y~~~l~~~d~i~lT~ 114 (159) T 3dau_A 89 PEIMVIGGGRV------YEQFLPKAQKLYLTH 114 (159) T ss_dssp SCEEECCCHHH------HHHHGGGCSEEEEEE T ss_pred CCEEEECCHHH------HHHHHHHCCEEEEEE T ss_conf 73699828999------999998799999997 No 57 >2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistance, structure, hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa} Probab=33.23 E-value=18 Score=15.55 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=23.8 Q ss_pred CCCC---CCCE-ECC-----HHHHHHHHHHHHHHHHCCCEEEEEECC Q ss_conf 6713---1857-772-----589999889899999889809999137 Q gi|254780653|r 25 NVPF---IDGK-VAD-----VTRIERVVPTILELVEKKAKVVIFSHL 62 (400) Q Consensus 25 NvPi---~~g~-I~d-----~~RI~~~~pTI~~l~~~~akvii~SH~ 62 (400) |+-+ ++|. |.+ ....+..+..++....+.-+.||.||. T Consensus 31 n~~~i~~~dg~viliD~~~~~~~~~~l~~~~~~~~~~~v~~II~TH~ 77 (246) T 2fhx_A 31 NVLVAKMLDGTVVIVSSPFENLGTQTLMDWVAKTMKPKKVVAINTHF 77 (246) T ss_dssp EEEEEECTTSEEEEESCCSSHHHHHHHHHHHHHHHCCSEEEEECCSS T ss_pred EEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 49999938987999999999899999999999745996699997999 No 58 >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* Probab=32.84 E-value=23 Score=14.94 Aligned_cols=63 Identities=14% Similarity=0.147 Sum_probs=38.2 Q ss_pred CCCHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 77101001599689998201671318577725899998898999998898099991377888984733224788887643 Q gi|254780653|r 5 RTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIAES 84 (400) Q Consensus 5 ~ti~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l~~ 84 (400) -+.||+ +|+||++|| . | -...|=++ +-+.|.++|++|++.. |. .-.++..++.+++ T Consensus 2 ~~~d~~-~L~gKvalI-------T--G---as~GIG~a--ia~~la~~Ga~V~i~~---r~------~~~~~~~~~~l~~ 57 (255) T 1fmc_A 2 FNSDNL-RLDGKCAII-------T--G---AGAGIGKE--IAITFATAGASVVVSD---IN------ADAANHVVDEIQQ 57 (255) T ss_dssp CCGGGG-CCTTCEEEE-------T--T---TTSHHHHH--HHHHHHTTTCEEEEEE---SC------HHHHHHHHHHHHH T ss_pred CCCCCC-CCCCCEEEE-------E--C---CCCHHHHH--HHHHHHHCCCEEEEEE---CC------HHHHHHHHHHHHH T ss_conf 987678-899998999-------3--8---97589999--9999998799899997---99------8999999999996 Q ss_pred HCCCCCCC Q ss_conf 10133545 Q gi|254780653|r 85 ILHKNILF 92 (400) Q Consensus 85 ~l~~~V~f 92 (400) . +.++.+ T Consensus 58 ~-g~~~~~ 64 (255) T 1fmc_A 58 L-GGQAFA 64 (255) T ss_dssp T-TCCEEE T ss_pred C-CCCEEE T ss_conf 3-993899 No 59 >2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A Probab=32.76 E-value=23 Score=14.93 Aligned_cols=212 Identities=14% Similarity=0.186 Sum_probs=96.6 Q ss_pred CCEEEEEEECCCCCC-CCEECCHHHHHHHHHHHHHHHHCCCEEEEEE---------CCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 968999820167131-8577725899998898999998898099991---------377888984733224788887643 Q gi|254780653|r 15 GLRCLLRVDWNVPFI-DGKVADVTRIERVVPTILELVEKKAKVVIFS---------HLGRPQSKSDKDCSLFKVVSIAES 84 (400) Q Consensus 15 gk~VlvRvD~NvPi~-~g~I~d~~RI~~~~pTI~~l~~~~akvii~S---------H~GRPkg~~~~~~Sl~~v~~~l~~ 84 (400) -|||.|.+-=++=.. +|. .|..||......|..|.++|-.|||.| |+|.++. ....+.++.+....+ T Consensus 4 ~kriViKiGss~lt~~~~~-l~~~~i~~l~~~i~~L~~~g~evilVsSGAva~G~~~l~~~~~--p~~l~~~Qa~AavGQ 80 (367) T 2j5v_A 4 SQTLVVKLGTSVLTGGSRR-LNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHLGYPEL--PATIASKQLLAAVGQ 80 (367) T ss_dssp CCEEEEEECHHHHTTTSSS-CCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTSCCC--CSSHHHHHHHHHHHH T ss_pred CCEEEEEECCCEEECCCCC-CCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCC--CCCHHHHHHHHHHHH T ss_conf 8789999067636894998-5899999999999999978998999875369856786299867--653467788998638 Q ss_pred ---------HC---CC---CCC-----CCCCCCHHHHHHHHHHC-CCCCE-EECCHHHHCCCCC--CCHHHHHHHHCCC- Q ss_conf ---------10---13---354-----56663102556655313-64648-9824243034321--0002466531243- Q gi|254780653|r 85 ---------IL---HK---NIL-----FVNDCIGSTLSQSIASL-SEGGI-ILAENVRFYSEEE--RNDPDFVRMLSRN- 139 (400) Q Consensus 85 ---------~l---~~---~V~-----fi~d~~g~~~~~~i~~l-~~g~i-lLLEN~Rf~~~E~--~n~~~f~k~La~l- 139 (400) .+ +. +|. |.+...-..+++.+..| +.|=| +.=||=---.+|. ..+..++-.+|.+ T Consensus 81 ~~Lm~~y~~~f~~~~~~~aQvLlT~~d~~~r~r~~N~~~tl~~Ll~~gvIPIiNEND~Va~~Ei~fGDND~Laa~vA~~~ 160 (367) T 2j5v_A 81 SRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLRALLDNNVVPVINENDAVATAEIKVGDNDNLSALAAILA 160 (367) T ss_dssp HHHHHHHHHHHHTTTCCEEEEEECGGGGSSHHHHHHHHHHHHHHHHTTCEEEEEECTTSCCGGGCCCSHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEECCEECCCCHHHHHHHHHHC T ss_conf 99999999987453123213312577631377999999999999738876115588823422121267528999999863 Q ss_pred -CCEEEECCHHHHCCCCCCEEECCCCCCC-CCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHC-CCE Q ss_conf -6424754404401137633302332100-0332556577765331016678718999607802557889987730-688 Q gi|254780653|r 140 -GDFYINDAFSVSHRAHASITGLSHLLPS-YIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKK-VDK 216 (400) Q Consensus 140 -aDiyVnDAF~~aHR~haS~~gi~~~lps-~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k-~D~ 216 (400) ||..|. + ..+-|+=.--|. ...--.-.++...+.-+..-....---.|-.=+.+||...+..... ++. T Consensus 161 ~AD~Lii--L-------TDvdGly~~~P~~~~~a~~i~~v~~~~~~~~~~~~~~~s~~GtGGM~tKl~AA~~a~~~Gi~~ 231 (367) T 2j5v_A 161 GADKLLL--L-------TDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDT 231 (367) T ss_dssp TCSEEEE--E-------ECC------------------------------------------CHHHHHHHHHHHHTTCEE T ss_pred CCCCEEE--E-------ECCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEE T ss_conf 9151688--5-------055762267876687665336873375678877168888888685177999999998789829 Q ss_pred EEECHHHHHHHHHH-HCCCCCCC Q ss_conf 88620578999998-30143433 Q gi|254780653|r 217 LVIGGGMANSFLVA-QGMGVGRS 238 (400) Q Consensus 217 iiigG~lantfL~A-~G~~IG~S 238 (400) +|..|---+.+... .|..+|.- T Consensus 232 iIa~G~~~~~l~~i~~g~~~GT~ 254 (367) T 2j5v_A 232 IIAAGSKPGVIGDVMEGISVGTL 254 (367) T ss_dssp EEEETTSTTHHHHHHHTCCCSEE T ss_pred EEECCCCCCCHHHHHCCCCCCCE T ss_conf 99218997506898669974424 No 60 >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, structural genomics, center for structural genomics of infectious diseases; 2.05A {Francisella tularensis subsp} Probab=32.05 E-value=23 Score=14.86 Aligned_cols=78 Identities=18% Similarity=0.118 Sum_probs=49.7 Q ss_pred HHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHHHHHH Q ss_conf 53310166787189996078025578899877306888862057899999830143433--3310000135688998753 Q gi|254780653|r 180 LESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRS--LCQRDFSDNVHQIAWEAKR 257 (400) Q Consensus 180 L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~S--l~e~~~~~~ak~i~~~a~~ 257 (400) ++.+-+...++-+|+- .+|.+..++.+++.+|.|++=+ .+.|.+ .+.+...+.++++.+...+ T Consensus 127 i~~ik~~g~k~Glaln----p~T~i~~l~~~l~~iD~VlvM~-----------V~PGf~GQ~f~~~~l~kI~~l~~~~~~ 191 (246) T 3inp_A 127 LQLIKSFGIQAGLALN----PATGIDCLKYVESNIDRVLIMS-----------VNPGFGGQKFIPAMLDKAKEISKWISS 191 (246) T ss_dssp HHHHHTTTSEEEEEEC----TTCCSGGGTTTGGGCSEEEEEC-----------SCTTC--CCCCTTHHHHHHHHHHHHHH T ss_pred HHHHHHCCCEEEEEEC----CCCCHHHHHHHHHHHCEEEEEE-----------CCCCCCCCHHHHHHHHHHHHHHHHHHC T ss_conf 9999981981799963----7778999988764000356742-----------169887611457799999999988752 Q ss_pred CCCCCCCEEEEECCC Q ss_conf 024554303541134 Q gi|254780653|r 258 SACEIIVPRDVVVAR 272 (400) Q Consensus 258 ~~~~I~lP~D~~v~~ 272 (400) ++.++.+-+|--+.. T Consensus 192 ~~~~~~I~VDGGIn~ 206 (246) T 3inp_A 192 TDRDILLEIDGGVNP 206 (246) T ss_dssp HTSCCEEEEESSCCT T ss_pred CCCCCEEEEECCCCH T ss_conf 477715999798799 No 61 >3myu_A High affinity transport system protein P37; Mg289, CYPL, extracytoplasmic, thiamine binding protein, lipoprotein; HET: VIB; 1.95A {Mycoplasma genitalium} Probab=31.72 E-value=13 Score=16.54 Aligned_cols=43 Identities=14% Similarity=0.148 Sum_probs=27.6 Q ss_pred CHHHHHHHHHHHCCCCCCC----CCCCCHHHHHHHHHHCCCC--CEEECCHHHH Q ss_conf 2478888764310133545----6663102556655313646--4898242430 Q gi|254780653|r 74 SLFKVVSIAESILHKNILF----VNDCIGSTLSQSIASLSEG--GIILAENVRF 121 (400) Q Consensus 74 Sl~~v~~~l~~~l~~~V~f----i~d~~g~~~~~~i~~l~~g--~ilLLEN~Rf 121 (400) .++|++++|++.|+++|.+ .+|. ...++.|+.| ++..+--.-+ T Consensus 27 ~~~pl~~~Ls~~l~~~V~V~~~~~~Dy-----~~~ieal~~g~~Dia~~gp~~y 75 (344) T 3myu_A 27 FFTVFSKKLSGKLNKKINVNFNIVDDS-----FTKINNIQANKADFAFVNSQAI 75 (344) T ss_dssp HHHHHHHHHHHHHTSCCEEEEEECCCH-----HHHHHHHHTTSCSEEEECGGGC T ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCH-----HHHHHHHHCCCCCEEEECCHHH T ss_conf 999999999998689658999964879-----9999999779956899790999 No 62 >3ek6_A Uridylate kinase; UMPK unique GTP binding site, allosteric regulation, ATP-binding, cytoplasm kinase, nucleotide-binding; 2.34A {Xanthomonas campestris PV} PDB: 3ek5_A Probab=31.61 E-value=24 Score=14.81 Aligned_cols=53 Identities=19% Similarity=0.191 Sum_probs=41.4 Q ss_pred CCCCCEEEEEEECCCCC-CCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 15996899982016713-185777258999988989999988980999913778 Q gi|254780653|r 12 DIRGLRCLLRVDWNVPF-IDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGR 64 (400) Q Consensus 12 d~~gk~VlvRvD~NvPi-~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GR 64 (400) .++-|||.|.+-=++=. +++.-.|..+|++....|+.+.+.|..+||.|.=|. T Consensus 6 ~~~~kRIViKiGgs~l~~~~~~~i~~~~i~~ia~~I~~l~~~G~~viiVssG~~ 59 (243) T 3ek6_A 6 ELSYRRILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGN 59 (243) T ss_dssp GCSCSEEEEEECGGGGTTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECSTT T ss_pred CCCCCEEEEEECCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCH T ss_conf 577777999977000137999885999999999999999977987999953501 No 63 >2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1 Probab=31.42 E-value=24 Score=14.79 Aligned_cols=147 Identities=13% Similarity=0.121 Sum_probs=72.1 Q ss_pred EEEEEEECCHHHHHHHHHHHHH--CCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEE Q ss_conf 1899960780255788998773--06888862057899999830143433331000013568899875302455430354 Q gi|254780653|r 191 LVAIVGGSKVSTKITLLINLVK--KVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDV 268 (400) Q Consensus 191 ~v~IiGGaKisdKi~~i~~L~~--k~D~iiigG~lantfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D~ 268 (400) -+-++-|. ++|-+..+..++. .+|-|+-.|+-|.. |+.. .++.-=.++-...|. -..+..+++++.+|-+ T Consensus 40 ~i~v~~~~-~edav~~~~~~~~~~~~DviISRG~ta~~-Ir~~-~~iPVVeI~vs~~Di-l~aL~~a~~~~~kIav---- 111 (225) T 2pju_A 40 NITPIQLG-FEKAVTYIRKKLANERCDAIIAAGSNGAY-LKSR-LSVPVILIKPSGYDV-LQFLAKAGKLTSSIGV---- 111 (225) T ss_dssp EEEEECCC-HHHHHHHHHHHTTTSCCSEEEEEHHHHHH-HHTT-CSSCEEEECCCHHHH-HHHHHHTTCTTSCEEE---- T ss_pred EEEEEECC-HHHHHHHHHHHHHCCCCCEEEECCHHHHH-HHHH-CCCCEEEEECCHHHH-HHHHHHHHHHCCCEEE---- T ss_conf 69998274-78999999999864998699968568999-9985-899889970787689-9999999975898899---- Q ss_pred ECCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCC Q ss_conf 11343232333310253212013345765200356777640577679997662532274365889999999986111488 Q gi|254780653|r 269 VVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERR 348 (400) Q Consensus 269 ~v~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~~~~ 348 (400) +...++ ....+.+++.+.--=.+ +.... ..++-..+.++. +.+ T Consensus 112 --------------Vgf~~~----------~~~~~~~~~ll~~~i~~--------~~~~~----~~e~~~~v~~l~-~~G 154 (225) T 2pju_A 112 --------------VTYQET----------IPALVAFQKTFNLRLDQ--------RSYIT----EEDARGQINELK-ANG 154 (225) T ss_dssp --------------EEESSC----------CHHHHHHHHHHTCCEEE--------EEESS----HHHHHHHHHHHH-HTT T ss_pred --------------EECCCC----------CHHHHHHHHHHCCCEEE--------EEECC----HHHHHHHHHHHH-HCC T ss_conf --------------937640----------36999999996994499--------99668----899999999999-869 Q ss_pred CEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHH Q ss_conf 5899748046998998488768646875079989987 Q gi|254780653|r 349 IISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWL 385 (400) Q Consensus 349 ~~sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~~L 385 (400) +-.||||+-+....+++|+...+- -+ |-+.-+.+ T Consensus 155 ~~vVVG~~~~~~~A~~~Gl~~vli--~S-geSI~~Ai 188 (225) T 2pju_A 155 TEAVVGAGLITDLAEEAGMTGIFI--YS-AATVRQAF 188 (225) T ss_dssp CCEEEESHHHHHHHHHTTSEEEES--SC-HHHHHHHH T ss_pred CCEEECCHHHHHHHHHCCCCEEEE--CC-HHHHHHHH T ss_conf 979998858999999849978997--58-89999999 No 64 >2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2 Probab=31.23 E-value=24 Score=14.77 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=36.4 Q ss_pred HCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 0159968999820167131857772589999889899999889809999137788 Q gi|254780653|r 11 RDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRP 65 (400) Q Consensus 11 ~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRP 65 (400) +.++||++.|.+.=++ ++|+..++..+.-|..|.+.|.++||. |=|+| T Consensus 17 ~~~~~k~iVIKiGgs~------l~~~~~~~~l~~~Ia~L~~~G~~vVlV-hGg~~ 64 (282) T 2bty_A 17 KEFYGKTFVIKFGGSA------MKQENAKKAFIQDIILLKYTGIKPIIV-HGGGP 64 (282) T ss_dssp HHHTTCEEEEEECSHH------HHSHHHHHHHHHHHHHHHHTTCEEEEE-ECCSH T ss_pred HHHCCCEEEEEECCHH------HCCHHHHHHHHHHHHHHHHCCCEEEEE-ECCCH T ss_conf 9868998999979056------178439999999999999889969999-68844 No 65 >3jwk_A Dihydrofolate reductase; oxidoreductase; HET: NAP 5WB; 2.08A {Bacillus anthracis} PDB: 3jw5_A* 3jwf_A* 3jwc_A* 3jvx_A* 3jwm_A* 3jw3_A* 3e0b_A* 3dat_A* 2qk8_A* 3fl8_A* 3fl9_A* 2kgk_A* Probab=29.51 E-value=25 Score=14.69 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=19.2 Q ss_pred EEEEEEECCHHHHHHHHHHHHHCCCEEEECH Q ss_conf 1899960780255788998773068888620 Q gi|254780653|r 191 LVAIVGGSKVSTKITLLINLVKKVDKLVIGG 221 (400) Q Consensus 191 ~v~IiGGaKisdKi~~i~~L~~k~D~iiigG 221 (400) -+.|+||+++ .+.+++.+|.+.+.= T Consensus 98 ~i~ViGG~~i------Y~~~l~~~d~i~lT~ 122 (168) T 3jwk_A 98 EIFIFGGAQI------FDLFLPYVDKLYITK 122 (168) T ss_dssp EEEEEECHHH------HHHHGGGCCEEEEEE T ss_pred CEEEECHHHH------HHHHHHHCCEEEEEE T ss_conf 5399872999------998887699999998 No 66 >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose phosphate pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 Probab=29.17 E-value=26 Score=14.55 Aligned_cols=77 Identities=14% Similarity=0.083 Sum_probs=46.1 Q ss_pred HHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHHHHHH Q ss_conf 53310166787189996078025578899877306888862057899999830143433--3310000135688998753 Q gi|254780653|r 180 LESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRS--LCQRDFSDNVHQIAWEAKR 257 (400) Q Consensus 180 L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~S--l~e~~~~~~ak~i~~~a~~ 257 (400) ++++-+...++.+|+ +.+|.+..++.+++.+|.|++=+ .+-|.+ -+.+..++.++++.+..++ T Consensus 111 i~~ik~~g~k~Glal----~p~T~~~~i~~~l~~vD~VlvMt-----------V~PGf~GQ~f~~~~l~kI~~~~~~~~~ 175 (230) T 1rpx_A 111 INQIKSLGAKAGVVL----NPGTPLTAIEYVLDAVDLVLIMS-----------VNPGFGGQSFIESQVKKISDLRKICAE 175 (230) T ss_dssp HHHHHHTTSEEEEEE----CTTCCGGGGTTTTTTCSEEEEES-----------SCTTCSSCCCCTTHHHHHHHHHHHHHH T ss_pred HHHHHHCCCEEEEEE----CCCCCHHHHHHHHHHCCEEEEEE-----------ECCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 999998798699996----89999899999986579899988-----------768987544468899999999999986 Q ss_pred CCCCCCCEEEEECC Q ss_conf 02455430354113 Q gi|254780653|r 258 SACEIIVPRDVVVA 271 (400) Q Consensus 258 ~~~~I~lP~D~~v~ 271 (400) ++..+.+-+|--+. T Consensus 176 ~~~~~~I~VDGGIn 189 (230) T 1rpx_A 176 RGLNPWIEVDGGVG 189 (230) T ss_dssp HTCCCEEEEESSCC T ss_pred CCCCEEEEEECCCC T ss_conf 59935899988878 No 67 >1df7_A DHFR, dihydrofolate reductase; structure-based inhibitor design, folateanalogs, rossmann fold, nicotinamide adenine dinucleotide; HET: NDP MTX; 1.70A {Mycobacterium tuberculosis} SCOP: c.71.1.1 PDB: 1dg5_A* 1dg7_A* 1dg8_A* 2cig_A* Probab=28.51 E-value=20 Score=15.27 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=18.9 Q ss_pred EEEEEEECCHHHHHHHHHHHHHCCCEEEECH Q ss_conf 1899960780255788998773068888620 Q gi|254780653|r 191 LVAIVGGSKVSTKITLLINLVKKVDKLVIGG 221 (400) Q Consensus 191 ~v~IiGGaKisdKi~~i~~L~~k~D~iiigG 221 (400) -+.|+||+.+= +.+++.+|++.+.= T Consensus 90 ~i~ViGG~~iY------~~~l~~~~~i~lT~ 114 (159) T 1df7_A 90 ETWVIGGGQVY------ALALPYATRCEVTE 114 (159) T ss_dssp SEEECCCHHHH------HHHGGGCSEEEEEE T ss_pred CEEEECHHHHH------HHHHHHCCEEEEEE T ss_conf 58996448999------99987689999999 No 68 >1ecf_A Glutamine phosphoribosylpyrophosphate amidotransferase; purine biosynthesis, glycosyltransferase, glutamine amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A* Probab=28.42 E-value=27 Score=14.47 Aligned_cols=14 Identities=14% Similarity=0.249 Sum_probs=10.3 Q ss_pred HHHHCCCCCEEECC Q ss_conf 55313646489824 Q gi|254780653|r 104 SIASLSEGGIILAE 117 (400) Q Consensus 104 ~i~~l~~g~ilLLE 117 (400) .+.+++|||++.+. T Consensus 220 ~irdv~PGEiv~i~ 233 (504) T 1ecf_A 220 FLRDVAPGEAIYIT 233 (504) T ss_dssp EEEECCTTEEEEEE T ss_pred EEEECCCCEEEEEE T ss_conf 89962898799998 No 69 >1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A* Probab=28.12 E-value=18 Score=15.52 Aligned_cols=169 Identities=17% Similarity=0.126 Sum_probs=89.1 Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCC-CCCCCCCCCHHHHHHHHHHHCCCCCCCCCC--CCHHHHHHHHHHCCCCCEEECC Q ss_conf 9889899999889809999137788-898473322478888764310133545666--3102556655313646489824 Q gi|254780653|r 41 RVVPTILELVEKKAKVVIFSHLGRP-QSKSDKDCSLFKVVSIAESILHKNILFVND--CIGSTLSQSIASLSEGGIILAE 117 (400) Q Consensus 41 ~~~pTI~~l~~~~akvii~SH~GRP-kg~~~~~~Sl~~v~~~l~~~l~~~V~fi~d--~~g~~~~~~i~~l~~g~ilLLE 117 (400) +...-|+.|-+.|-.|.-..+.|-- ... .+.+.-. .....+.+.+|.+.+. ..-..+.+.....++|.+++=| T Consensus 35 aVwk~i~~L~~~G~~I~s~~~~GY~l~~~-~~~l~~~---~i~~~~~~~~i~~~~~idSTN~~a~~~~~~~~~g~vviA~ 110 (321) T 1bia_A 35 AINKHIQTLRDWGVDVFTVPGKGYSLPEP-IQLLNAK---QILGQLDGGSVAVLPVIDSTNQYLLDRIGELKSGDACIAE 110 (321) T ss_dssp HHHHHHHHHHHTTCCCEEETTTEEECSSC-CCCCCHH---HHHHTCCSSCEEECSSBSCHHHHHHTTGGGCCTTCEEEES T ss_pred HHHHHHHHHHHCCCCEEEECCCCEEECCC-CCCCCHH---HHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEC T ss_conf 99999999997797299978967598985-3537999---9962357974999803682899999875068998099989 Q ss_pred HHHHCCCCCCCHHHHHHHHCCC--CCEEEECCHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEE Q ss_conf 2430343210002466531243--64247544044011376333023321000332556577765331016678718999 Q gi|254780653|r 118 NVRFYSEEERNDPDFVRMLSRN--GDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLESCFSESKKPLVAIV 195 (400) Q Consensus 118 N~Rf~~~E~~n~~~f~k~La~l--aDiyVnDAF~~aHR~haS~~gi~~~lps~aG~l~ekEi~~L~~~l~~~~~P~v~Ii 195 (400) + -+...-...+.|.|. +.+| ||...|...+.... ..++-.+|..+.+=++.+...--.-|=|-=.++ T Consensus 111 ~------QT~GRGR~GR~W~Sp~g~~l~----~S~~l~~~~~~~~~-~~lsl~~~~av~~al~~~~~~~v~iKWPNDI~~ 179 (321) T 1bia_A 111 Y------QQAGRGRRGRKWFSPFGANLY----LSMFWRLEQGPAAA-IGLSLVIGIVMAEVLRKLGADKVRVKWPNDLYL 179 (321) T ss_dssp C------BTTC---------CCTTSEEE----EEEEEEECC-CCCT-HHHHHHHHHHHHHHHHHTTCTTCEEETTTEEEE T ss_pred C------CCCCCCCCCCEEECCCCCCEE----EEEEECCCCCHHHH-HHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHH T ss_conf 7------688879998970689999889----99982675364466-888999999999999983665167636973300 Q ss_pred EECCHHHHHHHHHHHHHCCCEEEECHHHH Q ss_conf 60780255788998773068888620578 Q gi|254780653|r 196 GGSKVSTKITLLINLVKKVDKLVIGGGMA 224 (400) Q Consensus 196 GGaKisdKi~~i~~L~~k~D~iiigG~la 224 (400) +|.|+.-=+--...-.+....+++|+|+- T Consensus 180 ~~kKi~GIL~E~~~~~~~~~~~viGiGiN 208 (321) T 1bia_A 180 QDRKLAGILVELTGKTGDAAQIVIGAGIN 208 (321) T ss_dssp TTEEEEEEEEEEEC----CEEEEEEEEEE T ss_pred CCCCHHEEEEEEEECCCCEEEEEEEECCC T ss_conf 11011234333220355203799997653 No 70 >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F Probab=27.69 E-value=28 Score=14.38 Aligned_cols=128 Identities=14% Similarity=0.145 Sum_probs=64.0 Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCC-CCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCHHHH------HHHHCCCCCEE Q ss_conf 332247888876431013354566-63102556655313646489824243034321000246------65312436424 Q gi|254780653|r 71 KDCSLFKVVSIAESILHKNILFVN-DCIGSTLSQSIASLSEGGIILAENVRFYSEEERNDPDF------VRMLSRNGDFY 143 (400) Q Consensus 71 ~~~Sl~~v~~~l~~~l~~~V~fi~-d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n~~~f------~k~La~laDiy 143 (400) +..++..++.++.+ -+++|.++. |++-..+.++.+.+.. ..++.|+..+...|+.. .+..+.-.|+- T Consensus 111 KTTt~aKLA~~~~~-~g~kv~l~a~Dt~R~aA~eQL~~~a~-----~~~v~~~~~~~~~d~~~v~~~a~~~~~~~~~D~v 184 (297) T 1j8m_F 111 KTTTAGKLAYFYKK-KGFKVGLVGADVYRPAALEQLQQLGQ-----QIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEII 184 (297) T ss_dssp TTHHHHHHHHHHHH-TTCCEEEEECCCSSSHHHHHHHHHHH-----HHTCCEECCTTCCCHHHHHHHHHHHHHHTTCSEE T ss_pred CHHHHHHHHHHHHH-CCCCCCEEECCCCCHHHHHHHHHHHH-----HCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEE T ss_conf 20379999999996-79764112115654448999999863-----1395154237777767899999999985599889 Q ss_pred EECCHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHC--CCEEEEC Q ss_conf 7544044011376333023321000332556577765331016678718999607802557889987730--6888862 Q gi|254780653|r 144 INDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKK--VDKLVIG 220 (400) Q Consensus 144 VnDAF~~aHR~haS~~gi~~~lps~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k--~D~iiig 220 (400) +-|-=|..|++... ....|+..+.++. .|...++++=+... .+-+..++.+-+. .+.++++ T Consensus 185 lIDTaGR~~~~~~~--------------~~~~el~~i~~~~-~p~e~~LVlda~~g-~~~~~~~~~f~~~~~~~glIlT 247 (297) T 1j8m_F 185 IVDTAGRHGYGEEA--------------ALLEEMKNIYEAI-KPDEVTLVIDASIG-QKAYDLASKFNQASKIGTIIIT 247 (297) T ss_dssp EEECCCSCCTTCHH--------------HHHHHHHHHHHHH-CCSEEEEEEEGGGG-GGHHHHHHHHHHTCTTEEEEEE T ss_pred EECCCCCCCCHHHH--------------HHHHHHHHHHHHC-CCCEEEEEEECCCC-CCHHHHHHHHHHHCCCCEEEEE T ss_conf 95487767520556--------------5689999998636-97658998614568-4079999998763599879995 No 71 >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* Probab=27.63 E-value=26 Score=14.56 Aligned_cols=29 Identities=10% Similarity=0.066 Sum_probs=21.9 Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCC Q ss_conf 98898999998898099991377888984 Q gi|254780653|r 41 RVVPTILELVEKKAKVVIFSHLGRPQSKS 69 (400) Q Consensus 41 ~~~pTI~~l~~~~akvii~SH~GRPkg~~ 69 (400) +-+-+=..|.++|.+|+|+=--.|+.|+. T Consensus 118 AGLsAA~~L~~~G~~V~VlEa~~RvGGRi 146 (662) T 2z3y_A 118 SGLAAARQLQSFGMDVTLLEARDRVGGRV 146 (662) T ss_dssp HHHHHHHHHHHTTCEEEEECSSSSSBTTC T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCE T ss_conf 99999999987799889997899864654 No 72 >1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3 Probab=27.46 E-value=28 Score=14.36 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=38.4 Q ss_pred CEEEEEEECCCCCCC-CEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 689998201671318-5777258999988989999988980999913778 Q gi|254780653|r 16 LRCLLRVDWNVPFID-GKVADVTRIERVVPTILELVEKKAKVVIFSHLGR 64 (400) Q Consensus 16 k~VlvRvD~NvPi~~-g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GR 64 (400) ||+.|.+-=++=..+ +.-.|..||.+....|+.+.++|-.+++.|+=|. T Consensus 8 kRIVIKiGgs~l~~~~~~~ld~~~i~~ia~~I~~l~~~g~~vivV~gG~~ 57 (252) T 1z9d_A 8 QRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGN 57 (252) T ss_dssp SEEEEEECGGGGTCSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTT T ss_pred CEEEEEECCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 88999977024208999986999999999999999967998999979974 No 73 >3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.25A {Bacteroides fragilis} Probab=27.30 E-value=28 Score=14.34 Aligned_cols=50 Identities=22% Similarity=0.315 Sum_probs=32.9 Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC Q ss_conf 998898999998898099991377888984733224788887643101335456 Q gi|254780653|r 40 ERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIAESILHKNILFV 93 (400) Q Consensus 40 ~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l~~~l~~~V~fi 93 (400) ++-+..++.++++.-+|+|++|.. | ..|.--|..-.+.+|++ +++++.++ T Consensus 8 ~~~~~~~~~~i~~~~~i~I~~H~n-p--D~DalgSa~al~~~l~~-~gk~~~i~ 57 (343) T 3dma_A 8 QAHIDHFTKWFERADKIVIVSHVS-P--DGDAIGSSLGLYHFLDS-QDKIVNVI 57 (343) T ss_dssp HHHHHHHHHHHHHCSEEEEEECSS-C--CHHHHHHHHHHHHHHHH-TSCEEEEE T ss_pred HHHHHHHHHHHHHCCEEEEEECCC-C--CHHHHHHHHHHHHHHHH-CCCCEEEE T ss_conf 999999999996099699982899-9--81899999999999998-59948999 No 74 >3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} Probab=27.28 E-value=28 Score=14.34 Aligned_cols=45 Identities=18% Similarity=0.357 Sum_probs=29.0 Q ss_pred CCEEC-CHHHH-HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH Q ss_conf 85777-25899-9988989999988980999913778889847332247888876 Q gi|254780653|r 30 DGKVA-DVTRI-ERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIA 82 (400) Q Consensus 30 ~g~I~-d~~RI-~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l 82 (400) ||++. ++.+| .+....|+.|.++|-++++.| |||. .++.++++.+ T Consensus 13 DGTL~~~~~~i~~~~~~al~~l~~~g~~v~i~T--GR~~------~~~~~~~~~l 59 (279) T 3mpo_A 13 DGTLLNEKNELAQATIDAVQAAKAQGIKVVLCT--GRPL------TGVQPYLDAM 59 (279) T ss_dssp -----------CHHHHHHHHHHHHTTCEEEEEC--SSCH------HHHHHHHHHT T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEC--CCCH------HHHHHHHHHH T ss_conf 766538959509999999999998899999988--9988------9999999997 No 75 >2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis, nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana} Probab=26.46 E-value=29 Score=14.24 Aligned_cols=48 Identities=17% Similarity=0.254 Sum_probs=36.3 Q ss_pred HCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 0159968999820167131857772589999889899999889809999137788 Q gi|254780653|r 11 RDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRP 65 (400) Q Consensus 11 ~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRP 65 (400) ..++||++.|.+.=++ ++|+..+...+..|..|.+.|.++||. |=|.| T Consensus 32 ~~~~~k~iVIKiGgs~------l~~~~~~~~~~~dIa~L~~~G~~vVlV-hGg~~ 79 (298) T 2rd5_A 32 QKFRGKTIVVKYGGAA------MTSPELKSSVVSDLVLLACVGLRPILV-HGGGP 79 (298) T ss_dssp HHTTTCEEEEEECTHH------HHCHHHHHHHHHHHHHHHHTTCEEEEE-ECCHH T ss_pred HHHCCCEEEEEECCHH------HCCHHHHHHHHHHHHHHHHCCCEEEEE-ECCCH T ss_conf 9868997999989247------279779999999999999879959999-18835 No 76 >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: NAP; 2.07A {Thermotoga maritima MSB8} SCOP: c.2.1.2 Probab=26.36 E-value=29 Score=14.23 Aligned_cols=64 Identities=16% Similarity=0.064 Sum_probs=36.3 Q ss_pred CHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHC Q ss_conf 10100159968999820167131857772589999889899999889809999137788898473322478888764310 Q gi|254780653|r 7 MNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIAESIL 86 (400) Q Consensus 7 i~d~~d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l~~~l 86 (400) ++|+-||+||++||- - -..-|=++ +-+.|.++|++|++..+ . .-.+...++.+.+.. T Consensus 13 M~~lf~L~gKvalIT-------G-----as~GIG~a--iA~~la~~Ga~V~i~~r---~------~~~l~~~~~~l~~~~ 69 (267) T 1vl8_A 13 MKEVFDLRGRVALVT-------G-----GSRGLGFG--IAQGLAEAGCSVVVASR---N------LEEASEAAQKLTEKY 69 (267) T ss_dssp ----CCCTTCEEEEE-------T-----TTSHHHHH--HHHHHHHTTCEEEEEES---C------HHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCEEEEE-------C-----CCCHHHHH--HHHHHHHCCCEEEEEEC---C------HHHHHHHHHHHHHHH T ss_conf 051628899989994-------8-----98789999--99999987998999979---8------899999999999970 Q ss_pred CCCCCCC Q ss_conf 1335456 Q gi|254780653|r 87 HKNILFV 93 (400) Q Consensus 87 ~~~V~fi 93 (400) +.++.++ T Consensus 70 g~~~~~~ 76 (267) T 1vl8_A 70 GVETMAF 76 (267) T ss_dssp CCCEEEE T ss_pred CCCEEEE T ss_conf 9957999 No 77 >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 Probab=25.86 E-value=30 Score=14.17 Aligned_cols=77 Identities=13% Similarity=0.058 Sum_probs=46.7 Q ss_pred HHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHHHHHH Q ss_conf 53310166787189996078025578899877306888862057899999830143433--3310000135688998753 Q gi|254780653|r 180 LESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRS--LCQRDFSDNVHQIAWEAKR 257 (400) Q Consensus 180 L~~~l~~~~~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~S--l~e~~~~~~ak~i~~~a~~ 257 (400) +.++-+...++.+|+- .+|.+..++.+++.+|.+++-+ .+.|.+ -+.+...+.++++.+..++ T Consensus 105 i~~ik~~g~k~Glal~----p~T~i~~i~~~l~~~d~vliM~-----------V~PGf~GQ~f~~~~~~kI~~~~~~~~~ 169 (230) T 1tqj_A 105 LCQIRELGKKAGAVLN----PSTPLDFLEYVLPVCDLILIMS-----------VNPGFGGQSFIPEVLPKIRALRQMCDE 169 (230) T ss_dssp HHHHHHTTCEEEEEEC----TTCCGGGGTTTGGGCSEEEEES-----------SCC----CCCCGGGHHHHHHHHHHHHH T ss_pred HHHHHHCCCCEEEEEC----CCCCHHHHHHHHCCCCEEEEEE-----------ECCCCCCCCCCCHHHHHHHHHHHHHHC T ss_conf 9999986991899977----9998799999865368699998-----------547878765560268999999999723 Q ss_pred CCCCCCCEEEEECC Q ss_conf 02455430354113 Q gi|254780653|r 258 SACEIIVPRDVVVA 271 (400) Q Consensus 258 ~~~~I~lP~D~~v~ 271 (400) ++.++.+-+|--+. T Consensus 170 ~~~~~~I~VDGGIn 183 (230) T 1tqj_A 170 RGLDPWIEVDGGLK 183 (230) T ss_dssp HTCCCEEEEESSCC T ss_pred CCCCEEEEEECCCC T ss_conf 59970699978888 No 78 >3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.25A {Bacillus subtilis subsp} Probab=25.76 E-value=30 Score=14.16 Aligned_cols=21 Identities=10% Similarity=0.303 Sum_probs=11.6 Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEE Q ss_conf 899998898999998898099991 Q gi|254780653|r 37 TRIERVVPTILELVEKKAKVVIFS 60 (400) Q Consensus 37 ~RI~~~~pTI~~l~~~~akvii~S 60 (400) .|+...+ +.+-+++..++++. T Consensus 41 arl~t~i---~~~r~~~~~~l~ld 61 (341) T 3gve_A 41 ARTAQLI---QKHREQNPNTLLVD 61 (341) T ss_dssp HHHHHHH---HHHHHHCSSEEEEE T ss_pred HHHHHHH---HHHHHHCCCEEEEE T ss_conf 9999999---99996599879997 No 79 >2obb_A Hypothetical protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.108.1.25 Probab=25.55 E-value=30 Score=14.14 Aligned_cols=39 Identities=21% Similarity=0.238 Sum_probs=27.4 Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 99988989999988980999913778889847332247888876431 Q gi|254780653|r 39 IERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIAESI 85 (400) Q Consensus 39 I~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l~~~ 85 (400) +..++.+|+.|.++|.+|||.| +||.. .+....++|.+. T Consensus 26 i~~~Ie~l~~L~~~G~~III~T--aR~~~------~~~~t~~wL~k~ 64 (142) T 2obb_A 26 IPFAVETLKLLQQEKHRLILWS--VREGE------LLDEAIEWCRAR 64 (142) T ss_dssp CTTHHHHHHHHHHTTCEEEECC--SCCHH------HHHHHHHHHHTT T ss_pred CHHHHHHHHHHHHCCCEEEEEE--CCCCC------CHHHHHHHHHHH T ss_conf 7899999999997799799993--68974------179999999992 No 80 >3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis} Probab=25.33 E-value=31 Score=14.11 Aligned_cols=52 Identities=17% Similarity=0.176 Sum_probs=39.4 Q ss_pred CCCC-CEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 1599-689998201671318577725899998898999998898099991377 Q gi|254780653|r 12 DIRG-LRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLG 63 (400) Q Consensus 12 d~~g-k~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~G 63 (400) ++++ |||+|.+-=++=..++.-.|..+|.+....|..+.++|-+|||.+.=| T Consensus 46 ~~~~~kRIVIKiGgs~lt~~~~~ld~~~i~~ia~~I~~l~~~G~eVilVssGg 98 (281) T 3nwy_A 46 QLSGYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGG 98 (281) T ss_dssp -CCCCSEEEEEECGGGGGTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCT T ss_pred CCCCCCEEEEEECHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECH T ss_conf 13689879999887871399999199999999999999997799599995164 No 81 >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A Probab=25.32 E-value=31 Score=14.11 Aligned_cols=154 Identities=18% Similarity=0.212 Sum_probs=101.9 Q ss_pred CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC-CCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCHHH- Q ss_conf 80999913778889847332247888876431013354566-6310255665531364648982424303432100024- Q gi|254780653|r 54 AKVVIFSHLGRPQSKSDKDCSLFKVVSIAESILHKNILFVN-DCIGSTLSQSIASLSEGGIILAENVRFYSEEERNDPD- 131 (400) Q Consensus 54 akvii~SH~GRPkg~~~~~~Sl~~v~~~l~~~l~~~V~fi~-d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n~~~- 131 (400) ..||++- | |.|- -+..|+..+|.++.+. |++|.++. |++-+.+.++++.+.. .-++-||......+|. T Consensus 98 p~VIl~v--G-~~G~-GKTTT~aKLA~~~~~~-g~kv~lva~Dt~R~aA~eQL~~~a~-----~~~vp~~~~~~~~dp~~ 167 (425) T 2ffh_A 98 RNLWFLV--G-LQGS-GKTTTAAKLALYYKGK-GRRPLLVAADTQRPAAREQLRLLGE-----KVGVPVLEVMDGESPES 167 (425) T ss_dssp SEEEEEE--C-CTTS-SHHHHHHHHHHHHHTT-TCCEEEEECCSSCHHHHHHHHHHHH-----HHTCCEEECCTTCCHHH T ss_pred CEEEEEE--C-CCCC-CCHHHHHHHHHHHHHC-CCEEEEEECCCCCCCHHHHHHHHHH-----HCCCCEECCCCCCCHHH T ss_conf 7389996--6-7887-6100899999999863-9836898435567567999999998-----70882122467777677 Q ss_pred H---HHHHC--CCCCEEEECCHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHH Q ss_conf 6---65312--436424754404401137633302332100033255657776533101667871899960780255788 Q gi|254780653|r 132 F---VRMLS--RNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITL 206 (400) Q Consensus 132 f---~k~La--~laDiyVnDAF~~aHR~haS~~gi~~~lps~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~~ 206 (400) . +...| .-.|+-+-|-=|..|++. .+-.|+..+.++. +|..-++ |+-+.-=.+-+.. T Consensus 168 i~~~~~~~ak~~~~DviiIDTAGR~~~d~----------------~lm~EL~~i~~~~-~p~e~~L-Vlda~~gq~~~~~ 229 (425) T 2ffh_A 168 IRRRVEEKARLEARDLILVDTAGRLQIDE----------------PLMGELARLKEVL-GPDEVLL-VLDAMTGQEALSV 229 (425) T ss_dssp HHHHHHHHHHHTTCSEEEEECCCCSSCCH----------------HHHHHHHHHHHHH-CCSEEEE-EEEGGGTTHHHHH T ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHH----------------HHHHHHHHHHHHH-CCCEEEE-EEECCCCHHHHHH T ss_conf 89999999986699889996665125369----------------9999999999861-9856999-7305558678999 Q ss_pred HHHHHHC--CCEEEE-------CHHHHHHHHHHHCCCC Q ss_conf 9987730--688886-------2057899999830143 Q gi|254780653|r 207 LINLVKK--VDKLVI-------GGGMANSFLVAQGMGV 235 (400) Q Consensus 207 i~~L~~k--~D~iii-------gG~lantfL~A~G~~I 235 (400) .+.+-+. .+.+++ -||-+.......|..| T Consensus 230 a~~F~~~~~i~gvIlTKlD~takgG~alsi~~~t~~PI 267 (425) T 2ffh_A 230 ARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPI 267 (425) T ss_dssp HHHHHHHTCCCEEEEESGGGCSSCHHHHHHHHHHCCCE T ss_pred HHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCE T ss_conf 99988646998547632467775139999999869887 No 82 >3ia4_A Dihydrofolate reductase; NADPH, methotrexate, oxidoreductase; HET: NDP MTX; 1.70A {Moritella profunda} PDB: 3ia5_A 2zza_A* Probab=25.10 E-value=22 Score=15.03 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=19.6 Q ss_pred EEEEEEECCHHHHHHHHHHHHHCCCEEEECH Q ss_conf 1899960780255788998773068888620 Q gi|254780653|r 191 LVAIVGGSKVSTKITLLINLVKKVDKLVIGG 221 (400) Q Consensus 191 ~v~IiGGaKisdKi~~i~~L~~k~D~iiigG 221 (400) -+.|+||+++ .+.+++.+|++.+.= T Consensus 92 ~i~VIGG~~i------Y~~~l~~~d~i~iT~ 116 (162) T 3ia4_A 92 ELMIIGGATI------YNQCLAAADRLYLTH 116 (162) T ss_dssp EEEECCCHHH------HHHHGGGCSEEEEEE T ss_pred CEEECCHHHH------HHHHHHHCCEEEEEE T ss_conf 1799154999------999997699999988 No 83 >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Probab=25.10 E-value=31 Score=14.08 Aligned_cols=155 Identities=14% Similarity=0.258 Sum_probs=99.4 Q ss_pred CCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC-CCCHHHHHHHHHHCCCCCEEECCHHHHCCCCCCCHHH Q ss_conf 980999913778889847332247888876431013354566-6310255665531364648982424303432100024 Q gi|254780653|r 53 KAKVVIFSHLGRPQSKSDKDCSLFKVVSIAESILHKNILFVN-DCIGSTLSQSIASLSEGGIILAENVRFYSEEERNDPD 131 (400) Q Consensus 53 ~akvii~SH~GRPkg~~~~~~Sl~~v~~~l~~~l~~~V~fi~-d~~g~~~~~~i~~l~~g~ilLLEN~Rf~~~E~~n~~~ 131 (400) +..||++ .| |.|- -+..|+..+|.++.+. +.+|.++. |++-+.+.++.+.+.. --++.||..+...||. T Consensus 99 ~p~vi~~--vG-~~G~-GKTTT~aKLA~~~~~~-g~kv~lva~Dt~R~aA~eQL~~~a~-----~~~v~v~~~~~~~dp~ 168 (443) T 3dm5_A 99 KPTILLM--VG-IQGS-GKTTTVAKLARYFQKR-GYKVGVVCSDTWRPGAYHQLRQLLD-----RYHIEVFGNPQEKDAI 168 (443) T ss_dssp SSEEEEE--EC-CTTS-SHHHHHHHHHHHHHTT-TCCEEEEECCCSSTHHHHHHHHHHG-----GGTCEEECCTTCCCHH T ss_pred CCEEEEE--EC-CCCC-CCCCHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHH-----CCCCCEECCCCCCCHH T ss_conf 9828999--66-7889-7232799999999976-9942465314557669999999851-----2456500676433667 Q ss_pred -HHH-----HHCCCCCEEEECCHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHH Q ss_conf -665-----31243642475440440113763330233210003325565777653310166787189996078025578 Q gi|254780653|r 132 -FVR-----MLSRNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKIT 205 (400) Q Consensus 132 -f~k-----~La~laDiyVnDAF~~aHR~haS~~gi~~~lps~aG~l~ekEi~~L~~~l~~~~~P~v~IiGGaKisdKi~ 205 (400) .++ .-..-+|+-+-|-=|..|++. .+-.|+..+.++. +|...++ |+-..-=.+-+. T Consensus 169 ~i~~~a~~~a~~~~~D~viIDTAGR~~~d~----------------~lm~EL~~i~~~~-~p~e~lL-Vlda~~gq~a~~ 230 (443) T 3dm5_A 169 KLAKEGVDYFKSKGVDIIIVDTAGRHKEDK----------------ALIEEMKQISNVI-HPHEVIL-VIDGTIGQQAYN 230 (443) T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCCSSCCH----------------HHHHHHHHHHHHH-CCSEEEE-EEEGGGGGGHHH T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHH----------------HHHHHHHHHHCCC-CCCEEEE-EECCCCCHHHHH T ss_conf 899999999986699989987887536589----------------9999999752146-9824787-411434667899 Q ss_pred HHHHHHHC--CCEEEEC-------HHHHHHHHHHHCCCC Q ss_conf 89987730--6888862-------057899999830143 Q gi|254780653|r 206 LLINLVKK--VDKLVIG-------GGMANSFLVAQGMGV 235 (400) Q Consensus 206 ~i~~L~~k--~D~iiig-------G~lantfL~A~G~~I 235 (400) ..+.+.+. ++.++++ ||-+.......|..| T Consensus 231 ~a~~f~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI 269 (443) T 3dm5_A 231 QALAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPI 269 (443) T ss_dssp HHHHHHHSCTTEEEEEECCSSCSSHHHHHHHHHTTCCCE T ss_pred HHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCE T ss_conf 999855315888357733567876348977999979497 No 84 >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} Probab=24.91 E-value=22 Score=14.97 Aligned_cols=100 Identities=15% Similarity=0.225 Sum_probs=53.6 Q ss_pred HHHHCCCCCCCHHHHHHHHCCCCCEEEECCHHHHCCCCCCEEECCCC-CCC-CCCHHHHH--HHHHHHHHCCCCCCCEEE Q ss_conf 24303432100024665312436424754404401137633302332-100-03325565--777653310166787189 Q gi|254780653|r 118 NVRFYSEEERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHL-LPS-YIGRAMQK--ELSMLESCFSESKKPLVA 193 (400) Q Consensus 118 N~Rf~~~E~~n~~~f~k~La~laDiyVnDAF~~aHR~haS~~gi~~~-lps-~aG~l~ek--Ei~~L~~~l~~~~~P~v~ 193 (400) |+|.++|=..|-.-|.-.+.+---+-..+--.--|-+|.+.+..... ..+ +.+.--+. .+..+.+... ..||.+. T Consensus 90 nvqp~SGs~An~av~~all~pGd~im~l~l~~GGHlshg~~~~~~~~~~~~~~y~~~~~~~IDyd~~~~~a~-~~kPklI 168 (417) T 3n0l_A 90 NVQPNSGSQANQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAK-KEKPKLI 168 (417) T ss_dssp ECCCSSHHHHHHHHHHHHSCTTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHH-HHCCSEE T ss_pred CCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHH-HCCCCEE T ss_conf 643468699999999996289987997356767776766464665503434656889888567999999998-6199857 Q ss_pred EEEECCHHHHHHH--HHHHHHCCCEEE Q ss_conf 9960780255788--998773068888 Q gi|254780653|r 194 IVGGSKVSTKITL--LINLVKKVDKLV 218 (400) Q Consensus 194 IiGGaKisdKi~~--i~~L~~k~D~ii 218 (400) |+|++-.+-.++. +..+.+.+.-++ T Consensus 169 i~G~S~y~~~~d~~~~~eia~~vga~l 195 (417) T 3n0l_A 169 VCGASAYARVIDFAKFREIADEIGAYL 195 (417) T ss_dssp EECCSSCCSCCCHHHHHHHHHHHTCEE T ss_pred EECCCCCCCCCCHHHHHHHHHHHCHHE T ss_conf 752544566668689999986424114 No 85 >1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A {Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A* 2hf2_A Probab=24.55 E-value=32 Score=14.02 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=19.1 Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 9889899999889809999137788 Q gi|254780653|r 41 RVVPTILELVEKKAKVVIFSHLGRP 65 (400) Q Consensus 41 ~~~pTI~~l~~~~akvii~SH~GRP 65 (400) .....|+.|.++|.++++.| ||| T Consensus 25 ~~~~~l~~l~~~g~~v~i~T--GR~ 47 (271) T 1rlm_A 25 RFMAQYQELKKRGIKFVVAS--GNQ 47 (271) T ss_dssp HHHHHHHHHHHHTCEEEEEC--SSC T ss_pred HHHHHHHHHHHCCCEEEEEC--CCC T ss_conf 99999999997799899986--998 No 86 >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} PDB: 3gdf_A Probab=24.23 E-value=32 Score=13.98 Aligned_cols=72 Identities=14% Similarity=0.061 Sum_probs=39.3 Q ss_pred CCCC-HHHHCCCCCEEEEEEECCCCCC-CCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHH Q ss_conf 8771-0100159968999820167131-8577725899998898999998898099991377888984733224788887 Q gi|254780653|r 4 LRTM-NDLRDIRGLRCLLRVDWNVPFI-DGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSI 81 (400) Q Consensus 4 ~~ti-~d~~d~~gk~VlvRvD~NvPi~-~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~ 81 (400) ..++ +.+ +|+||+||| .- .|. +-|= .-+-+.|.++|++|++..+- |. -.++..++. T Consensus 9 ~~~~~~~~-~L~gKvalV-------TGAsG~----~GIG--~aia~~la~~Ga~V~i~~~~-~~-------~~~~~~~~~ 66 (267) T 3gdg_A 9 HESLLDQL-SLKGKVVVV-------TGASGP----KGMG--IEAARGCAEMGAAVAITYAS-RA-------QGAEENVKE 66 (267) T ss_dssp CSSHHHHH-CCTTCEEEE-------TTCCSS----SSHH--HHHHHHHHHTSCEEEECBSS-SS-------SHHHHHHHH T ss_pred CCCCCCCC-CCCCCEEEE-------ECCCCC----CHHH--HHHHHHHHHCCCEEEEEECC-CH-------HHHHHHHHH T ss_conf 52530225-989998999-------598999----7089--99999999869989998489-45-------779999999 Q ss_pred HHHHCCCCCCCCC-CCC Q ss_conf 6431013354566-631 Q gi|254780653|r 82 AESILHKNILFVN-DCI 97 (400) Q Consensus 82 l~~~l~~~V~fi~-d~~ 97 (400) +.+..+.++.++. |.. T Consensus 67 l~~~~g~~~~~~~~Dv~ 83 (267) T 3gdg_A 67 LEKTYGIKAKAYKCQVD 83 (267) T ss_dssp HHHHHCCCEECCBCCTT T ss_pred HHHHCCCCEEEEECCCC T ss_conf 99850995799981389 No 87 >1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A* Probab=24.22 E-value=30 Score=14.19 Aligned_cols=56 Identities=23% Similarity=0.354 Sum_probs=35.4 Q ss_pred CCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC Q ss_conf 871899960780255788998773068888620578999998301434333310000135688998753024554 Q gi|254780653|r 189 KPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEII 263 (400) Q Consensus 189 ~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~ 263 (400) ||-++..|-.--.+.+.-....++++|-+++-| .|+. +.-+..+...+++++.+++ T Consensus 159 rP~vv~fge~~~~~~~~~~~~~~~~~DlllviG---------------TSl~----v~p~~~l~~~a~~~g~~vi 214 (253) T 1ma3_A 159 KPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVG---------------SSLV----VYPAAELPYIAKKAGAKMI 214 (253) T ss_dssp EEEECCBTSBCCHHHHHHHHHHHHHCSEEEEES---------------CCSC----EETGGGHHHHHHHHTCEEE T ss_pred CCCEEECCCCCCHHHHHHHHHHHHCCCEEEEEC---------------CCCE----EEECCHHHHHHHHCCCCEE T ss_conf 982788888586578999999986399899976---------------7874----6452068999997499299 No 88 >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, cytoplasm, one-carbon metabolism, pyridoxal phosphate; HET: MSE; 1.80A {Salmonella typhimurium} PDB: 1dfo_A* 3g8m_A* 1eqb_A* Probab=24.04 E-value=19 Score=15.51 Aligned_cols=101 Identities=16% Similarity=0.142 Sum_probs=58.6 Q ss_pred HHHHCCCCCCCHHHHHHHHCCCCCEEEECCHHHHCCCCCCEEECCCCCCCCCCHHHH----HHHHHHHHHCCCCCCCEEE Q ss_conf 243034321000246653124364247544044011376333023321000332556----5777653310166787189 Q gi|254780653|r 118 NVRFYSEEERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQ----KELSMLESCFSESKKPLVA 193 (400) Q Consensus 118 N~Rf~~~E~~n~~~f~k~La~laDiyVnDAF~~aHR~haS~~gi~~~lps~aG~l~e----kEi~~L~~~l~~~~~P~v~ 193 (400) |+|-++|=..|-.-|.-.+.+---+-..+--.--|=+|.+.+.+.-..-....+-+. =.++.+.+... ..||.+. T Consensus 95 nVqp~SGs~An~av~~all~pGD~il~l~l~~GGHlshg~~~~~~g~~~~~~~y~vd~~~~IDyd~~~~~a~-~~kPklI 173 (420) T 3gbx_A 95 NVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAK-EHKPKMI 173 (420) T ss_dssp ECCCSSHHHHHHHHHHHHCCTTCEEEEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHH-HHCCSEE T ss_pred CEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHH-HCCCCEE T ss_conf 112388689999999982799998997455567764556654456535788742538888718999999998-6099879 Q ss_pred EEEECCHHHHHHH--HHHHHHCCCEEEE Q ss_conf 9960780255788--9987730688886 Q gi|254780653|r 194 IVGGSKVSTKITL--LINLVKKVDKLVI 219 (400) Q Consensus 194 IiGGaKisdKi~~--i~~L~~k~D~iii 219 (400) |+|++-.+-.++. ++...+.+.-+++ T Consensus 174 i~G~S~y~r~~d~~~~reiad~vga~l~ 201 (420) T 3gbx_A 174 IGGFSAYSGVVDWAKMREIADSIGAYLF 201 (420) T ss_dssp EECCTTCCSCCCHHHHHHHHHHTTCEEE T ss_pred EECCCCCCCCCCHHHHHHHHHHCCCEEE T ss_conf 9355336676599999999864181799 No 89 >1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 function project, S2F, structural genomics, unknown functio; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A Probab=23.41 E-value=33 Score=13.88 Aligned_cols=41 Identities=22% Similarity=0.260 Sum_probs=26.8 Q ss_pred CEEEEEEECCHHHHHHHHHHHHH-CCCEEEECHHHHHHHHHHHCCC Q ss_conf 71899960780255788998773-0688886205789999983014 Q gi|254780653|r 190 PLVAIVGGSKVSTKITLLINLVK-KVDKLVIGGGMANSFLVAQGMG 234 (400) Q Consensus 190 P~v~IiGGaKisdKi~~i~~L~~-k~D~iiigG~lantfL~A~G~~ 234 (400) -.++|.||+=-+ .+....+ .+|-++.|=.=-.+++.|+-.+ T Consensus 166 ~rVai~~GsG~~----~i~~a~~~g~D~~ITGe~k~h~~~~A~~~g 207 (247) T 1nmo_A 166 QRVAWCTGGGQS----FIDSAARFGVDAFITGEVSEQTIHSAREQG 207 (247) T ss_dssp EEEEECSSSCGG----GHHHHHHHCCSEEEESCCCHHHHHHHHHTT T ss_pred EEEEEECCCCHH----HHHHHHHCCCCEEEECCCCHHHHHHHHHCC T ss_conf 699998688878----999998559978997667779999999769 No 90 >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold; HET: 1PE MES; 1.80A {Aquifex aeolicus VF5} PDB: 2p68_A* Probab=23.31 E-value=33 Score=13.87 Aligned_cols=63 Identities=16% Similarity=0.138 Sum_probs=37.4 Q ss_pred CCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC Q ss_conf 15996899982016713185777258999988989999988980999913778889847332247888876431013354 Q gi|254780653|r 12 DIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIAESILHKNIL 91 (400) Q Consensus 12 d~~gk~VlvRvD~NvPi~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~l~~~l~~~V~ 91 (400) +|+||++|| .| -..-|=++ +-+.|.++|++|++.. |. .-.+...++.+.+..+.++. T Consensus 4 ~L~gK~alV---------TG---as~GIG~a--ia~~la~~Ga~V~~~~---r~------~~~l~~~~~~l~~~~g~~~~ 60 (248) T 2pnf_A 4 KLQGKVSLV---------TG---STRGIGRA--IAEKLASAGSTVIITG---TS------GERAKAVAEEIANKYGVKAH 60 (248) T ss_dssp CCTTCEEEE---------TT---CSSHHHHH--HHHHHHHTTCEEEEEE---SS------HHHHHHHHHHHHHHHCCCEE T ss_pred CCCCCEEEE---------EC---CCCHHHHH--HHHHHHHCCCEEEEEE---CC------HHHHHHHHHHHHHHHCCCEE T ss_conf 859998999---------37---78789999--9999998799899997---98------89999999999886299389 Q ss_pred CCC-CCC Q ss_conf 566-631 Q gi|254780653|r 92 FVN-DCI 97 (400) Q Consensus 92 fi~-d~~ 97 (400) ++. |.. T Consensus 61 ~~~~Dv~ 67 (248) T 2pnf_A 61 GVEMNLL 67 (248) T ss_dssp EEECCTT T ss_pred EEECCCC T ss_conf 9986789 No 91 >1juv_A DHFR, dihydrofolate reductase; complexed with NADPH, oxidoreductase; HET: NDP; 1.70A {Enterobacteria phage T4} SCOP: c.71.1.1 Probab=22.95 E-value=34 Score=13.82 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=19.3 Q ss_pred EEEEEEECCHHHHHHHHHHHHHCCCEEEECH Q ss_conf 1899960780255788998773068888620 Q gi|254780653|r 191 LVAIVGGSKVSTKITLLINLVKKVDKLVIGG 221 (400) Q Consensus 191 ~v~IiGGaKisdKi~~i~~L~~k~D~iiigG 221 (400) -+.|+||+.+ .+.+++.+|.|++.= T Consensus 123 ~v~IiGG~~I------Y~~~l~~~d~i~lT~ 147 (193) T 1juv_A 123 KVSVIGGPAL------LYAALPYADEVVVSR 147 (193) T ss_dssp CEEEEECHHH------HHHHGGGCSEEEEEE T ss_pred EEEEECCHHH------HHHHHHHCCEEEEEE T ss_conf 5999769999------999986689999999 No 92 >3cse_A Dihydrofolate reductase; protein-ligand complex, oxidoreductase; HET: NAP N22; 1.60A {Candida glabrata} PDB: 3eej_A* 3eek_A* 3eel_A* 3eem_A* Probab=22.51 E-value=27 Score=14.49 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=20.1 Q ss_pred EEEEEEECCHHHHHHHHHHHHHCCCEEEECHH Q ss_conf 18999607802557889987730688886205 Q gi|254780653|r 191 LVAIVGGSKVSTKITLLINLVKKVDKLVIGGG 222 (400) Q Consensus 191 ~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~ 222 (400) -+.||||+.+ .+.+++.+|+++++=. T Consensus 117 ~IfVIGG~~I------Y~~~l~~~d~i~lT~I 142 (227) T 3cse_A 117 RIYIIGGGEI------YRQSMDLADHWLITKI 142 (227) T ss_dssp EEEECCCHHH------HHHHTTTCSEEEEEEE T ss_pred EEEEECCHHH------HHHHHHHCCEEEEEEE T ss_conf 2999899999------9999866898999999 No 93 >2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.6A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A Probab=22.20 E-value=35 Score=13.73 Aligned_cols=52 Identities=19% Similarity=0.369 Sum_probs=29.4 Q ss_pred CCCCCEEEEEEECCH--HH-HHHHH----HHHHHCCCEEEECHH-------HHHHHHHHHCCCCCC Q ss_conf 667871899960780--25-57889----987730688886205-------789999983014343 Q gi|254780653|r 186 ESKKPLVAIVGGSKV--ST-KITLL----INLVKKVDKLVIGGG-------MANSFLVAQGMGVGR 237 (400) Q Consensus 186 ~~~~P~v~IiGGaKi--sd-Ki~~i----~~L~~k~D~iiigG~-------lantfL~A~G~~IG~ 237 (400) ..+||.++|+|+++. ++ -...- +.|.++--.++.||+ .+...+.+.|..+|- T Consensus 10 ~~~rp~IaV~Gs~~~~~~~~~~~~A~~lg~~La~~g~~vVsGG~~~Gim~a~~~ga~~~gg~~~gv 75 (176) T 2iz6_A 10 SGRKPIIGVMGPGKADTAENQLVMANELGKQIATHGWILLTGGRSLGVMHEAMKGAKEAGGTTIGV 75 (176) T ss_dssp -CCCCEEEEECCCGGGCCHHHHHHHHHHHHHHHHTTCEEEEECSSSSHHHHHHHHHHHTTCCEEEE T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCC T ss_conf 479988999837789989589999999999999889949956976508899999998748963211 No 94 >3g3d_A UMP synthase, uridine 5'-monophosphate synthase; C-terminal domain, orotidine 5'-monophosphate decarboxylase, human, 5-fluoro-6-azido-UMP; HET: 5FU; 1.70A {Homo sapiens} PDB: 3bvj_A* 2p1f_A 2eaw_A 3bgg_A* 3bgj_A* Probab=22.01 E-value=32 Score=14.02 Aligned_cols=60 Identities=18% Similarity=0.263 Sum_probs=24.2 Q ss_pred HHHHHHHHHHHCCCC---CCCCCCC-CHHHHHHHHHHCCCCCEEECC-HHHHCCCCCCCHHHHHHHHCC Q ss_conf 478888764310133---5456663-102556655313646489824-243034321000246653124 Q gi|254780653|r 75 LFKVVSIAESILHKN---ILFVNDC-IGSTLSQSIASLSEGGIILAE-NVRFYSEEERNDPDFVRMLSR 138 (400) Q Consensus 75 l~~v~~~l~~~l~~~---V~fi~d~-~g~~~~~~i~~l~~g~ilLLE-N~Rf~~~E~~n~~~f~k~La~ 138 (400) ..|+++.|-+++.++ +.+.-|. ..+++.+.++.+.+- |..++ ++.++.. ..+++.++|.. T Consensus 68 ~~~~~~kL~~lm~~Kks~L~vAlD~~s~~e~l~la~~l~p~-I~~lKig~~li~~---~G~~~I~~L~~ 132 (312) T 3g3d_A 68 IHPVASKLLRLMQKKETNLCLSADVSLARELLQLADALGPS-ICMLKTHVDILND---FTLDVMKELIT 132 (312) T ss_dssp CCHHHHHHHHHHHHHTCCEEEECCCSCHHHHHHHHHHHGGG-CSEEEECGGGCTT---CCHHHHHHHHH T ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCC-CEEEEECHHHHHH---CCHHHHHHHHH T ss_conf 89699999999973368889996369999999999984885-2699987899743---79999999999 No 95 >1apy_A Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG BMA; 2.00A {Homo sapiens} SCOP: d.153.1.5 PDB: 1apz_A* Probab=21.47 E-value=36 Score=13.63 Aligned_cols=69 Identities=10% Similarity=0.107 Sum_probs=47.3 Q ss_pred CCEEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC Q ss_conf 87189996078025578899877306888862057899999830143433331000013568899875302455 Q gi|254780653|r 189 KPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEI 262 (400) Q Consensus 189 ~P~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I 262 (400) +-+-+|.+=..+.--|.+.+.++++-+++++.|-=|..|.+.+|+..- +......++..+..++++++. T Consensus 74 ~~~GaV~~v~~vknPI~lAr~vme~t~h~~LvG~GA~~fA~~~G~~~~-----d~~t~~t~~~~~~w~~~~~~~ 142 (162) T 1apy_A 74 MDVGAVGDLRRIKNAIGVARKVLEHTTHTLLVGESATTFAQSMGFINE-----DLSTSASQALHSDWLARNCQP 142 (162) T ss_dssp CCEEEEEEECSCSCHHHHHHHHHHHBSCSEEEHHHHHHHHHHTTCCCC-----CCCCHHHHHHHHHHHHTTSCS T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCC-----CCCCHHHHHHHHHHHHHCCCC T ss_conf 653333224624678999999980599637774799999998599775-----888889999999999862684 No 96 >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Probab=21.42 E-value=36 Score=13.63 Aligned_cols=12 Identities=17% Similarity=0.058 Sum_probs=5.8 Q ss_pred CCEEEEECCCCC Q ss_conf 767999766253 Q gi|254780653|r 312 ARTVMWNGPLGV 323 (400) Q Consensus 312 AktI~WNGP~Gv 323 (400) .+.||+.|-..- T Consensus 205 ~~Ii~~sgR~~~ 216 (301) T 1ltq_A 205 YQIVVVSGRESG 216 (301) T ss_dssp CEEEEEECSCCC T ss_pred CEEEEEECCCHH T ss_conf 869999377404 No 97 >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Probab=21.21 E-value=16 Score=15.95 Aligned_cols=55 Identities=15% Similarity=0.085 Sum_probs=26.0 Q ss_pred HHHHHHHHHHHH--CCCEEE-ECHHHHHHHH-HHHCCCCCCCCC----CCCCCHHHHHHHHHH Q ss_conf 255788998773--068888-6205789999-983014343333----100001356889987 Q gi|254780653|r 201 STKITLLINLVK--KVDKLV-IGGGMANSFL-VAQGMGVGRSLC----QRDFSDNVHQIAWEA 255 (400) Q Consensus 201 sdKi~~i~~L~~--k~D~ii-igG~lantfL-~A~G~~IG~Sl~----e~~~~~~ak~i~~~a 255 (400) .+.-..|..|+. ++.+++ +|-..++.-+ .|.+..-+..++ +++..+.|++.++++ T Consensus 58 p~~g~~L~~L~~~~~ak~iLEiGT~~GyStl~lA~al~~~g~v~tiE~~~~~~~~A~~~~~~a 120 (232) T 3cbg_A 58 PEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKA 120 (232) T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHC T ss_conf 999999999999749978999843438999999985899858999976741489999999986 No 98 >1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1 Probab=20.83 E-value=37 Score=13.55 Aligned_cols=58 Identities=16% Similarity=0.046 Sum_probs=29.7 Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEE Q ss_conf 135688998753024554303541134323233331025321201334576520035677764057767999 Q gi|254780653|r 246 DNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMW 317 (400) Q Consensus 246 ~~ak~i~~~a~~~~~~I~lP~D~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~Ti~~~~~~I~~AktI~W 317 (400) ....+.++.+..+|+++++ |..... .+. +. +++.+-++-..+...+.+.+.+|..|+. T Consensus 59 ~~~~~~l~~l~~~gv~~~v-----C~~~~~---~rG-i~-----~~~l~~g~~~~~~~~l~~~i~~ad~vit 116 (117) T 1jx7_A 59 YNIQQMLEILTAQNVPVKL-----CKTCTD---GRG-IS-----TLPLIDGVEIGTLVELAQWTLSADKVLT 116 (117) T ss_dssp CCHHHHHHHHHHTTCCEEE-----EHHHHH---HTT-CT-----TSCBCTTEEEECHHHHHHHTTTCSEEEE T ss_pred HHHHHHHHHHHHCCCEEEE-----EHHHHH---HCC-CC-----HHHCCCCCEECCHHHHHHHHHHCCEEEE T ss_conf 4199999999986988998-----789998---729-97-----1431477288399999999996797884 No 99 >2q5c_A NTRC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824} Probab=20.81 E-value=37 Score=13.54 Aligned_cols=150 Identities=13% Similarity=0.183 Sum_probs=79.7 Q ss_pred EEEEEEECCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEC Q ss_conf 18999607802557889987730688886205789999983014343333100001356889987530245543035411 Q gi|254780653|r 191 LVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVV 270 (400) Q Consensus 191 ~v~IiGGaKisdKi~~i~~L~~k~D~iiigG~lantfL~A~G~~IG~Sl~e~~~~~~ak~i~~~a~~~~~~I~lP~D~~v 270 (400) +..+.=.+-+++.+++.+++-+.+|-|+-.|+-|...-+. .+++-=-++-...|. -+.+..+++++.+|-+- T Consensus 29 ~~~~~~~~~l~~~~~iA~~l~~~~DVIISRGgTa~~Ir~~--~~iPVVeI~vs~~Di-l~al~~a~~~~~kiavv----- 100 (196) T 2q5c_A 29 FIPITKTASLTRASKIAFGLQDEVDAIISRGATSDYIKKS--VSIPSISIKVTRFDT-MRAVYNAKRFGNELALI----- 100 (196) T ss_dssp CEEEEEECCHHHHHHHHHHHTTTCSEEEEEHHHHHHHHTT--CSSCEEEECCCHHHH-HHHHHHHGGGCSEEEEE----- T ss_pred CEEEEEEEEHHHHHHHHHHHHCCCCEEEECCHHHHHHHHH--CCCCEEEECCCHHHH-HHHHHHHHHHCCCEEEE----- T ss_conf 7567886669999999997543987999896589999982--899779980788799-99999999758978999----- Q ss_pred CCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCE Q ss_conf 34323233331025321201334576520035677764057767999766253227436588999999998611148858 Q gi|254780653|r 271 AREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRII 350 (400) Q Consensus 271 ~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~Ti~~~~~~I~~AktI~WNGP~GvfE~~~F~~GT~~l~~~ia~~~~~~~~~ 350 (400) + + ..+ ....+.+++++.-- .. .+....-..-...+.++. +.++- T Consensus 101 g--f-----------~~~----------~~~~~~i~~ll~~~-i~-------~~~~~~~~e~~~~i~~l~-----~~G~~ 144 (196) T 2q5c_A 101 A--Y-----------KHS----------IVDKHEIEAMLGVK-IK-------EFLFSSEDEITTLISKVK-----TENIK 144 (196) T ss_dssp E--E-----------SSC----------SSCHHHHHHHHTCE-EE-------EEEECSGGGHHHHHHHHH-----HTTCC T ss_pred E--C-----------CCC----------CHHHHHHHHHHCCC-EE-------EEEECCHHHHHHHHHHHH-----HCCCC T ss_conf 6--7-----------850----------15899999985995-59-------999668899999999999-----86998 Q ss_pred EEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHC Q ss_conf 997480469989984887686468750799899874 Q gi|254780653|r 351 SIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLE 386 (400) Q Consensus 351 sivGGGdT~aai~~~g~~~~~~hvSTgGGA~L~~L~ 386 (400) .||||+-+....+++|+... .+.+|--+..+.++ T Consensus 145 vvVG~~~~~~~A~~~Gl~~i--li~Sg~eSI~~Al~ 178 (196) T 2q5c_A 145 IVVSGKTVTDEAIKQGLYGE--TINSGEESLRRAIE 178 (196) T ss_dssp EEEECHHHHHHHHHTTCEEE--ECCCCHHHHHHHHH T ss_pred EEECCHHHHHHHHHCCCCEE--EEECCHHHHHHHHH T ss_conf 99998799999998599789--99654999999999 No 100 >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Probab=20.72 E-value=38 Score=13.53 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=12.0 Q ss_pred HHHHHHHHHHHCCCCCCCEEE Q ss_conf 356889987530245543035 Q gi|254780653|r 247 NVHQIAWEAKRSACEIIVPRD 267 (400) Q Consensus 247 ~ak~i~~~a~~~~~~I~lP~D 267 (400) ....+++.+++++.++++..- T Consensus 412 gt~nll~a~~~~~~r~I~~SS 432 (660) T 1z7e_A 412 ENLRIIRYCVKYRKRIIFPST 432 (660) T ss_dssp HHHHHHHHHHHTTCEEEEECC T ss_pred HHHHHHHHHHHHCCCEEEECC T ss_conf 999999999983995999647 No 101 >3lu1_A WBGU; rossman fold, epimerase, lipopolysaccharide, glycan, NADH, U glcnac, isomerase; HET: NAD UD2; 2.50A {Plesiomonas shigelloides} Probab=20.61 E-value=38 Score=13.52 Aligned_cols=82 Identities=12% Similarity=0.142 Sum_probs=42.0 Q ss_pred CCCCCHHHHCCCCCEEEEEEECCCCC-CCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHH Q ss_conf 88771010015996899982016713-18577725899998898999998898099991377888984733224788887 Q gi|254780653|r 3 RLRTMNDLRDIRGLRCLLRVDWNVPF-IDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSI 81 (400) Q Consensus 3 ~~~ti~d~~d~~gk~VlvRvD~NvPi-~~g~I~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~~Sl~~v~~~ 81 (400) ++.++.+-..+++|+||| . .+|-| --..+++|+++|..|+.+....+. . ...+...... T Consensus 26 ~~~~~~~~~~~~~K~ILV-------TGgtGfI--------Gs~lv~~L~~~g~~V~~~d~~~~~--~---~~~~~~~~~~ 85 (364) T 3lu1_A 26 RYEEITQQLIFSPKTWLI-------TGVAGFI--------GSNLLEKLLKLNQVVIGLDNFSTG--H---QYNLDEVKTL 85 (364) T ss_dssp HHHHHHHHHHHSCCEEEE-------ETTTSHH--------HHHHHHHHHTTTCEEEEEECSSSC--C---HHHHHHHHHH T ss_pred HHHHHHHHHCCCCCEEEE-------ECCCCHH--------HHHHHHHHHHCCCEEEEEECCCCC--C---HHHHHHHHHH T ss_conf 899999973558998999-------6887589--------999999999788989999789875--4---3246788764 Q ss_pred HHHHCCCCCCCCC-CCCHHHHHHH Q ss_conf 6431013354566-6310255665 Q gi|254780653|r 82 AESILHKNILFVN-DCIGSTLSQS 104 (400) Q Consensus 82 l~~~l~~~V~fi~-d~~g~~~~~~ 104 (400) ....-...+.|+. |.......+. T Consensus 86 ~~~~~~~~~~~i~~Di~d~~~~~~ 109 (364) T 3lu1_A 86 VSTEQWSRFCFIEGDIRDLTTCEQ 109 (364) T ss_dssp SCHHHHTTEEEEECCTTSHHHHHH T ss_pred HHHCCCCCCEEEECCCCCHHHHHH T ss_conf 200015770799740579899999 No 102 >1dct_A Protein (modification methylase HAEIII); enzyme, cytosine methylase, transferase/DNA complex; HET: DNA C49 5CM; 2.80A {Haemophilus influenzae biotypeaegyptius} SCOP: c.66.1.26 Probab=20.57 E-value=38 Score=13.51 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=15.7 Q ss_pred HHHHHHCCCCCEEECCHHHHCCC Q ss_conf 66553136464898242430343 Q gi|254780653|r 102 SQSIASLSEGGIILAENVRFYSE 124 (400) Q Consensus 102 ~~~i~~l~~g~ilLLEN~Rf~~~ 124 (400) ...++.++| .+++||||+-... T Consensus 95 ~r~i~~~~P-~~~~lENV~~~~~ 116 (324) T 1dct_A 95 IRILKQKKP-IFFLAENVKGMMA 116 (324) T ss_dssp HHHHHHHCC-SEEEEEEEGGGGS T ss_pred HHHHHHHCC-CEEEEECCCHHHH T ss_conf 999998589-7899865411344 No 103 >3dfr_A Dihydrofolate reductase; oxido-reductase; HET: NDP MTX; 1.70A {Lactobacillus casei} SCOP: c.71.1.1 PDB: 1ao8_A* 1bzf_A* 1dis_A* 1diu_A* 1lud_A* 2hm9_A* 2hqp_A* Probab=20.44 E-value=38 Score=13.49 Aligned_cols=25 Identities=24% Similarity=0.527 Sum_probs=18.9 Q ss_pred EEEEEEECCHHHHHHHHHHHHHCCCEEEECH Q ss_conf 1899960780255788998773068888620 Q gi|254780653|r 191 LVAIVGGSKVSTKITLLINLVKKVDKLVIGG 221 (400) Q Consensus 191 ~v~IiGGaKisdKi~~i~~L~~k~D~iiigG 221 (400) -+.|+||+++ .+.+++.+|.+++.= T Consensus 93 ~i~IiGG~~I------Y~~~l~~~d~i~lT~ 117 (162) T 3dfr_A 93 ELVIAGGAQI------FTAFKDDVDTLLVTR 117 (162) T ss_dssp CEEECCCHHH------HHHTGGGCCEEEEEE T ss_pred CEEEECHHHH------HHHHHHHCCEEEEEE T ss_conf 5899687999------999886579999987 Done!