RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780653|ref|YP_003065066.1| phosphoglycerate kinase
[Candidatus Liberibacter asiaticus str. psy62]
(400 letters)
>gnl|CDD|143930 pfam00162, PGK, Phosphoglycerate kinase.
Length = 383
Score = 492 bits (1269), Expect = e-140
Identities = 184/388 (47%), Positives = 251/388 (64%), Gaps = 10/388 (2%)
Query: 6 TMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRP 65
T++DL D++G R L+RVD+NVP DGK+ D TRI +PTI L+EK AKVV+ SHLGRP
Sbjct: 1 TLDDL-DLKGKRVLVRVDFNVPLDDGKITDDTRIRAALPTIKYLLEKGAKVVLLSHLGRP 59
Query: 66 QSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEE 125
+ SL V +L K + FV+DCIG +IA+L G ++L ENVRFY+EE
Sbjct: 60 KGGPKDKYSLKPVAKRLSELLGKPVKFVDDCIGPEAEAAIAALKPGEVLLLENVRFYAEE 119
Query: 126 ER----NDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLL-PSYIGRAMQKELSML 180
E NDP+F + L+ GD Y+NDAF +HRAHAS G++ +L PS G M+KEL L
Sbjct: 120 ESKAEKNDPEFAKKLASLGDIYVNDAFGTAHRAHASTVGVAKVLPPSAAGFLMEKELEAL 179
Query: 181 ESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLC 240
++P VAI+GG+KVS KI ++ NL+ KVDKL+IGGGMAN+FL AQG +G+SL
Sbjct: 180 SKALENPERPFVAILGGAKVSDKIKVIENLLDKVDKLLIGGGMANTFLKAQGYNIGKSLV 239
Query: 241 QRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFK 300
+ D + ++ +AK +I++P DVVVA E T+VV +P + LD+G K
Sbjct: 240 EEDLIETAKELLEKAKEKGVKIVLPVDVVVADEFSADAETKVVDVDEIPDGWMGLDIGPK 299
Query: 301 TVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTIT 360
T+E +VI A+TV+WNGP+GVFE E F + T VA +A+ SI GGGDT
Sbjct: 300 TIELFAEVIKDAKTVVWNGPMGVFEFENFAKGTKAVAKAIAESGA----FSIVGGGDTAA 355
Query: 361 ALAHAGISNEFTYVSTAGGAFLEWLEGK 388
A+ AG++++F+++ST GGA LE LEGK
Sbjct: 356 AVEKAGLADKFSHISTGGGASLELLEGK 383
>gnl|CDD|30475 COG0126, Pgk, 3-phosphoglycerate kinase [Carbohydrate transport and
metabolism].
Length = 395
Score = 438 bits (1129), Expect = e-123
Identities = 192/401 (47%), Positives = 262/401 (65%), Gaps = 14/401 (3%)
Query: 1 MSRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFS 60
M +T+ DL D+ G R L+RVD+NVP DGK+ D TRI +PTI L+EK AKVV+ S
Sbjct: 1 MMMKKTILDL-DLAGKRVLVRVDFNVPVDDGKITDDTRIRAALPTIKYLLEKGAKVVLLS 59
Query: 61 HLGRPQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVR 120
HLGRP+ SDK SL V +L K + FV+DC+G Q++A L +G ++L ENVR
Sbjct: 60 HLGRPKEYSDKT-SLEPVAKRLSELLGKEVKFVDDCVGPEARQAVAELKDGEVLLLENVR 118
Query: 121 FYSEEERNDPD----FVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQKE 176
FYSEEE+ND + V+ L+ GD ++NDAF +HRAHAS G + LPS G M+KE
Sbjct: 119 FYSEEEKNDEEARTELVKKLASLGDVFVNDAFGTAHRAHASTVGFAKFLPSAAGFLMEKE 178
Query: 177 LSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVG 236
L L ++P VAI+GG+KVS KI ++ NL+KK DKL+IGGGMAN+FL AQG VG
Sbjct: 179 LDALGKALENPERPFVAILGGAKVSDKIGVIENLLKKADKLIIGGGMANTFLKAQGYDVG 238
Query: 237 RSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILD 296
+SL + D D ++ +AK +I++P DVVVA+E P V +P D +ILD
Sbjct: 239 KSLVEFDLIDGAKELLEKAKD---KIVLPVDVVVAKEFSRDAPATVKLE--IPDDLMILD 293
Query: 297 VGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGG 356
+G KT+E ++I A+T++WNGP+GVFE E F + T EVA +AK + SI GGG
Sbjct: 294 IGPKTIELFAEIIKGAKTIVWNGPMGVFEFENFAKGTEEVAKAIAKSSG---AFSIIGGG 350
Query: 357 DTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALS 397
DT A+ G++++ +++ST GGA LE+LEGK+LPG+ AL
Sbjct: 351 DTAAAIDKLGLADKISHISTGGGASLEFLEGKELPGVEALE 391
>gnl|CDD|29400 cd00318, Phosphoglycerate_kinase, Phosphoglycerate kinase (PGK) is
a monomeric enzyme which catalyzes the transfer of the
high-energy phosphate group of 1,3-bisphosphoglycerate
to ADP, forming ATP and 3-phosphoglycerate. This
reaction represents the first of the two substrate-level
phosphorylation events in the glycolytic pathway.
Substrate-level phosphorylation is defined as production
of ATP by a process, which is catalyzed by
water-soluble enzymes in the cytosol; not involving
membranes and ion gradients. .
Length = 397
Score = 420 bits (1081), Expect = e-118
Identities = 179/398 (44%), Positives = 255/398 (64%), Gaps = 9/398 (2%)
Query: 7 MNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRPQ 66
++DL D++G R L+RVD+NVP DGK+ D TRI +PTI L+E+ AKVV+ SHLGRP+
Sbjct: 1 IDDL-DLKGKRVLVRVDFNVPVDDGKITDDTRIRAALPTIKYLLEQGAKVVLLSHLGRPK 59
Query: 67 SKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEE 126
+ ++ SL V +L + + F NDC+G +++ +L G ++L ENVRFY EEE
Sbjct: 60 GEPNEKYSLAPVAKALSELLGQPVTFANDCVGPEAEEAVEALKPGDVLLLENVRFYPEEE 119
Query: 127 RN-------DPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSM 179
D +F + L+ GD Y+NDAF +HRAHAS+ G++ LLPS G M+KEL
Sbjct: 120 GKRDDDKEADEEFAKKLASLGDVYVNDAFGTAHRAHASMVGIALLLPSAAGFLMEKELKY 179
Query: 180 LESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSL 239
L ++P VAI+GG+KVS KI ++ NL+ KVD L+IGGGMA +FL AQGM +G+SL
Sbjct: 180 LAKALENPERPFVAILGGAKVSDKIQVIENLLDKVDYLIIGGGMAFTFLKAQGMDIGKSL 239
Query: 240 CQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGF 299
+ D + + +AK +I++P DVVVA + K T+VV+ +P + LD+G
Sbjct: 240 FEEDGIELAKSLLEKAKAKGVKIVLPVDVVVADKFKADANTKVVTDDGIPDGWMGLDIGP 299
Query: 300 KTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTI 359
KT+E +VI +A+T++WNGP+GVFE F + T +A +A TK SI GGGDT
Sbjct: 300 KTIELFAEVIRKAKTIVWNGPMGVFEFPAFAKGTKAIADAIAAATKAGA-FSIIGGGDTA 358
Query: 360 TALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALS 397
A G++++ ++VST GGA LE LEGK+LPG+ AL
Sbjct: 359 AAAEKFGLADKISHVSTGGGASLELLEGKELPGVAALE 396
>gnl|CDD|36581 KOG1367, KOG1367, KOG1367, 3-phosphoglycerate kinase [Carbohydrate
transport and metabolism].
Length = 416
Score = 333 bits (854), Expect = 8e-92
Identities = 163/414 (39%), Positives = 246/414 (59%), Gaps = 20/414 (4%)
Query: 1 MSRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAK-VVIF 59
+S T+++L D++G R +RVD+NVP D K+ + RI +PTI L+ AK VV+
Sbjct: 3 LSSKLTIDNL-DLKGKRVFIRVDFNVPLKDNKITNNQRIVAALPTIKYLLSNGAKSVVLM 61
Query: 60 SHLGRPQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENV 119
SHLGRP+ +K SL V +S+L K ++F++DC+G + +++AS + G +IL EN+
Sbjct: 62 SHLGRPKGVRNKKYSLAPVAPELKSLLGKEVVFLDDCVGPEVEKAVASPAPGSVILLENL 121
Query: 120 RFYSEEERNDPD--------------FVRMLSRNGDFYINDAFSVSHRAHASITGLSHLL 165
RFY EEE D F L+ GD Y+NDAF +HRAH+S+ G+
Sbjct: 122 RFYVEEEGKGKDDSGKKVADPAKVKEFRASLASLGDVYVNDAFGTAHRAHSSMVGVGLPQ 181
Query: 166 PSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMAN 225
S G +QKEL +P +AI+GG+KV+ KI L+ NL+ KV++L+IGGGMA
Sbjct: 182 -SAAGFLLQKELDYFAKALENPVRPFLAILGGAKVADKIQLIENLLDKVNELIIGGGMAF 240
Query: 226 SFL-VAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREM-KTGIPTQVV 283
+FL V GM +G+SL + ++ V + +AK I++P D V+A + + QV
Sbjct: 241 TFLKVLNGMEIGKSLFDEEGAEIVKDLMEKAKAKGVRILLPVDFVIADKFAEDANSKQVT 300
Query: 284 SAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKL 343
+ + +P + LD+G ++++ + +A A+T++WNGP GVFE E F T + + KL
Sbjct: 301 AEEGIPDGWMGLDIGPESIKMFAEAVATAKTIVWNGPPGVFEFEKFAAGTEALMDALVKL 360
Query: 344 TKERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALS 397
T + + +I GGGDT TA G ++ ++VST GGA LE LEGK LPG+ ALS
Sbjct: 361 T-GKGVTTIIGGGDTATACKKFGTEDKVSHVSTGGGASLELLEGKVLPGVDALS 413
>gnl|CDD|163653 cd07410, MPP_CpdB_N, Escherichia coli CpdB and related proteins,
N-terminal metallophosphatase domain. CpdB is a
bacterial periplasmic protein with an N-terminal
metallophosphatase domain and a C-terminal
3'-nucleotidase domain. This alignment model represents
the N-terminal metallophosphatase domain, which has
2',3'-cyclic phosphodiesterase activity, hydrolyzing the
2',3'-cyclic phosphates of adenosine, guanosine,
cytosine and uridine to yield nucleoside and phosphate.
CpdB also hydrolyzes the chromogenic substrates
p-nitrophenyl phosphate (PNPP), bis(PNPP) and
p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought
to play a scavenging role during RNA hydrolysis by
converting the non-transportable nucleotides produced by
RNaseI to nucleosides which can easily enter a cell for
use as a carbon source. This family also includes YfkN,
a Bacillus subtilis nucleotide phosphoesterase with two
copies of each of the metallophosphatase and
3'-nucleotidase domains. The N-terminal
metallophosphatase domain belongs to a large superfamily
of distantly related metallophosphatases (MPPs) that
includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA
lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). MPPs are functionally
diverse, but all share a conserved domain with an active
site consisting of two metal ions (usually manganese,
iron, or zinc) coordinated with octahedral geometry by a
cage of histidine, aspartate, and asparagine residues.
The conserved domain is a double beta-sheet sandwich
with a di-metal active site made up of residues located
at the C-terminal side of the sheets. This domain is
thought to allow for productive metal coordination.
Length = 277
Score = 31.8 bits (73), Expect = 0.33
Identities = 22/72 (30%), Positives = 26/72 (36%), Gaps = 11/72 (15%)
Query: 329 FDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGK 388
F YV KL E G D + LAH G + T A E E
Sbjct: 165 FTDPVETAKKYVPKLRAE--------GADVVVVLAHGGFERDLEESLTGENAAYELAEE- 215
Query: 389 DLPGI-VALSGH 399
+PGI L+GH
Sbjct: 216 -VPGIDAILTGH 226
>gnl|CDD|58618 cd04252, AAK_NAGK-fArgBP, AAK_NAGK-fArgBP: N-Acetyl-L-glutamate
kinase (NAGK) of the fungal arginine-biosynthetic
pathway (fArgBP). The nuclear-encoded, mitochondrial
polyprotein precursor with an N-terminal NAGK (ArgB)
domain (this CD), a central DUF619 domain, and a
C-terminal reductase domain (ArgC, N-Acetylglutamate
Phosphate Reductase, NAGPR). The precursor is cleaved in
the mitochondria into two distinct enzymes (NAGK-DUF619
and NAGPR). Native molecular weights of these proteins
indicate that the kinase is an octamer whereas the
reductase is a dimer. This CD also includes some
gamma-proteobacteria (Xanthomonas and Xylella) NAG
kinases with an N-terminal NAGK (ArgB) domain (this CD)
and a C-terminal DUF619 domain. The DUF619 domain is
described as a putative distant homolog of the
acetyltransferase, ArgA, predicted to function in NAG
synthase association in fungi. Eukaryotic sequences have
an N-terminal mitochondrial transit peptide. Members of
this NAG kinase domain CD belong to the Amino Acid
Kinase Superfamily (AAK)..
Length = 248
Score = 27.9 bits (62), Expect = 5.6
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 293 IILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISI 352
+ L+ K VE +++ A+AR + GVFE E D+ + + + K +I
Sbjct: 72 VFLEENLKLVEALERNGARARPI----TSGVFEAEYLDKDKYGLVGKITGVNKAPIEAAI 127
Query: 353 AGG 355
G
Sbjct: 128 RAG 130
>gnl|CDD|73205 cd00439, Transaldolase, Transaldolase. Enzymes found in the
non-oxidative branch of the pentose phosphate pathway,
that catalyze the reversible transfer of a
dihydroxyacetone group from fructose-6-phosphate to
erythrose-4-phosphate yielding sedoheptulose-7-phosphate
and glyceraldehyde-3-phosphate. They are members of the
class I aldolases, who are characterized by using a
Schiff-base mechanism for stabilization of the reaction
intermediates..
Length = 252
Score = 27.8 bits (61), Expect = 6.1
Identities = 27/153 (17%), Positives = 44/153 (28%), Gaps = 15/153 (9%)
Query: 242 RDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKT 301
R + N I S R +V + + ++V +
Sbjct: 22 RGVTTNPSIIQAAISTSNAYNDQFRTLVESGKDIESAYWELVVKDIQDACKLF------- 74
Query: 302 VEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRII----SIAGGGD 357
Q A R + + + VE A Y++K+ R I + A G
Sbjct: 75 EPIYDQTEADGRVSVEVSARLADDTQ----GMVEAAKYLSKVVNRRNIYIKIPATAEGIP 130
Query: 358 TITALAHAGISNEFTYVSTAGGAFLEWLEGKDL 390
I L AGIS T + + G +
Sbjct: 131 AIKDLIAAGISVNVTLIFSIAQYEAVADAGTSV 163
>gnl|CDD|37585 KOG2374, KOG2374, KOG2374, Uncharacterized conserved protein
[Function unknown].
Length = 661
Score = 27.4 bits (60), Expect = 6.8
Identities = 29/155 (18%), Positives = 50/155 (32%), Gaps = 9/155 (5%)
Query: 1 MSRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFS 60
++ + + DL DIR + W F + I E +KK ++ I
Sbjct: 290 LTLIHMLKDLIDIRNNILAAKKKWEEAFTMTDIHGNEETIDEEEDIWEEDDKKVELDIVK 349
Query: 61 HLGR----PQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILA 116
++ QS+ + F V + S D + S SL +I
Sbjct: 350 NVAHVMRTQQSERNSSDPDFGEVKKSTSEARSI----KDSLTKKYGSSANSL-RDKVISE 404
Query: 117 ENVRFYSEEERNDPDFVRMLSRNGDFYINDAFSVS 151
V + E N VR R + + D ++
Sbjct: 405 APVMNWGSELTNWETEVRANYREIESHWGDQDAII 439
>gnl|CDD|38777 KOG3569, KOG3569, KOG3569, RAS signaling inhibitor ST5 [Signal
transduction mechanisms].
Length = 425
Score = 27.2 bits (60), Expect = 9.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 341 AKLTKERRIISIAGGGDTITALAHA 365
A L ERRII IA T+++ HA
Sbjct: 195 ASLLLERRIIFIASKLSTLSSCIHA 219
>gnl|CDD|145578 pfam02514, CobN-Mg_chel, CobN/Magnesium Chelatase. This family
contains a domain common to the cobN protein and to
magnesium protoporphyrin chelatase. CobN is implicated
in the conversion of hydrogenobyrinic acid a,c-diamide
to cobyrinic acid. Magnesium protoporphyrin chelatase is
involved in chlorophyll biosynthesis.
Length = 1064
Score = 27.1 bits (61), Expect = 9.2
Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 4/19 (21%)
Query: 382 LEWLEGKDLPGIVALSGHC 400
LEWL GK V LSG C
Sbjct: 430 LEWLPGKQ----VGLSGAC 444
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.321 0.136 0.393
Gapped
Lambda K H
0.267 0.0602 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,671,773
Number of extensions: 244805
Number of successful extensions: 641
Number of sequences better than 10.0: 1
Number of HSP's gapped: 625
Number of HSP's successfully gapped: 19
Length of query: 400
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 304
Effective length of database: 4,189,273
Effective search space: 1273538992
Effective search space used: 1273538992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.4 bits)