RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780653|ref|YP_003065066.1| phosphoglycerate kinase
[Candidatus Liberibacter asiaticus str. psy62]
(400 letters)
>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus
stearothermophilus} SCOP: c.86.1.1
Length = 394
Score = 419 bits (1079), Expect = e-118
Identities = 160/393 (40%), Positives = 238/393 (60%), Gaps = 4/393 (1%)
Query: 5 RTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGR 64
+T+ D+ D+RG R RVD+NVP G + D TRI +PTI L+E AKV++ SHLGR
Sbjct: 4 KTIRDV-DVRGKRVFCRVDFNVPMEQGAITDDTRIRAALPTIRYLIEHGAKVILASHLGR 62
Query: 65 PQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSE 124
P+ K ++ L V +L + + N+ +G + ++ L+EG ++L ENVRFY
Sbjct: 63 PKGKVVEELRLDAVAKRLGELLERPVAKTNEAVGDEVKAAVDRLNEGDVLLLENVRFYPG 122
Query: 125 EERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLESCF 184
EE+NDP+ + + D Y+NDAF +HRAHAS G++H LP+ G M+KEL +L
Sbjct: 123 EEKNDPELAKAFAELADLYVNDAFGAAHRAHASTEGIAHYLPAVAGFLMEKELEVLGKAL 182
Query: 185 SESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDF 244
S +P AI+GG+KV KI ++ NL++KVD L+IGGG+A +F+ A G VG+SL + D
Sbjct: 183 SNPDRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEEDK 242
Query: 245 SDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVEY 304
+ +AK +P DVVVA T+VV ++P D LD+G KT E
Sbjct: 243 IELAKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTREL 302
Query: 305 IKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAH 364
+ VI +++ V+WNGP+GVFE++ F T +A +A+ S+ GGGD+ A+
Sbjct: 303 YRDVIRESKLVVWNGPMGVFEMDAFAHGTKAIAEALAEALD---TYSVIGGGDSAAAVEK 359
Query: 365 AGISNEFTYVSTAGGAFLEWLEGKDLPGIVALS 397
G++++ ++ST GGA LE++EGK LPG+VAL
Sbjct: 360 FGLADKMDHISTGGGASLEFMEGKQLPGVVALE 392
>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl
acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A
{Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A*
Length = 415
Score = 393 bits (1010), Expect = e-110
Identities = 143/414 (34%), Positives = 225/414 (54%), Gaps = 20/414 (4%)
Query: 1 MSRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVI-F 59
+S ++ DL D++ R +RVD+NVP K+ RI +PTI ++E + V+
Sbjct: 2 LSSKLSVQDL-DLKDKRVFIRVDFNVPLDGKKITSNQRIVAALPTIKYVLEHHPRYVVLA 60
Query: 60 SHLGRPQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENV 119
SHLG+P + ++ SL V +S+L K++ F+NDC+G + ++ + + G +IL EN+
Sbjct: 61 SHLGQPNGERNEKYSLAPVAKELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENL 120
Query: 120 RFYSEEER--------------NDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLL 165
R++ EEE + F LS D YINDAF +HRAH+S+ G L
Sbjct: 121 RYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADVYINDAFGTAHRAHSSMVG-FDLP 179
Query: 166 PSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMAN 225
G ++KEL +P +AI+GG+KV+ KI L+ NL+ KVD ++IGGGMA
Sbjct: 180 QRAAGFLLEKELKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAF 239
Query: 226 SFLVAQGMGV-GRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVS 284
+F G S+ + ++ V ++ +AK E+++P D ++A T+ V+
Sbjct: 240 TFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVT 299
Query: 285 AQS-VPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKL 343
+ +P LD G ++ + +A+A+T++WNGP GVFE E F T + V K
Sbjct: 300 DKEGIPAGWQGLDNGPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKS 359
Query: 344 TKERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALS 397
+ I GGGDT T G++++ ++VST GGA LE LEGK+LPG+ LS
Sbjct: 360 SAAGNT-VIIGGGDTATVAKKYGVTDKISHVSTGGGASLELLEGKELPGVAFLS 412
>1ltk_A Phosphoglycerate kinase; PGK, glycolysis, glycerol, open
conformation, ADP complex, selenomethionine,
transferase; HET: AMP; 3.00A {Plasmodium falciparum}
SCOP: c.86.1.1
Length = 425
Score = 390 bits (1003), Expect = e-109
Identities = 157/415 (37%), Positives = 239/415 (57%), Gaps = 20/415 (4%)
Query: 1 MSRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKA-KVVIF 59
+ +++DL+DI+ + L+RVD+NVP +G + D RI +PTI L ++ A K+++
Sbjct: 11 LGNKLSISDLKDIKNKKVLVRVDFNVPIENGIIKDTNRITATLPTINHLKKEGASKIILI 70
Query: 60 SHLGRPQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENV 119
SH GRP ++ +L V + +L + +LF+NDC+G + I + E +IL EN+
Sbjct: 71 SHCGRPDGLRNEKYTLKPVAETLKGLLGEEVLFLNDCVGKEVEDKINAAKENSVILLENL 130
Query: 120 RFYSEEERNDPD---------------FVRMLSRNGDFYINDAFSVSHRAHASITGLSHL 164
RF+ EEE D F L++ D +INDAF +HRAH+S+ G+
Sbjct: 131 RFHIEEEGKGVDANGNKVKANKEDVEKFQNDLTKLADVFINDAFGTAHRAHSSMVGVKLN 190
Query: 165 LPSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMA 224
G M+KEL ++PL+AI+GG+KVS KI L+ NL+ KVD+++IGGGMA
Sbjct: 191 -VKASGFLMKKELEYFSKALENPQRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGGMA 249
Query: 225 NSFL-VAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVV 283
+F V M +G SL S V +I +AK +I +P D +A T+ V
Sbjct: 250 YTFKKVLNNMKIGTSLFDEAGSKIVGEIMEKAKAKNVQIFLPVDFKIADNFDNNANTKFV 309
Query: 284 -SAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAK 342
+ +P + + LD G K++E K VI ++TV+WNGP GVFE+ F + ++E + V +
Sbjct: 310 TDEEGIPDNWMGLDAGPKSIENYKDVILTSKTVIWNGPQGVFEMPNFAKGSIECLNLVVE 369
Query: 343 LTKERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALS 397
+TK+ I+I GGGDT + + NE ++VST GGA LE LEGK+LPG++ALS
Sbjct: 370 VTKKG-AITIVGGGDTASLVEQQNKKNEISHVSTGGGASLELLEGKELPGVLALS 423
>2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia,
transferase, phosphoprotein, glycolysis,
nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens}
PDB: 2wzc_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A*
2wzd_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A* 2p9q_A*
2paa_A*
Length = 416
Score = 373 bits (958), Expect = e-104
Identities = 155/416 (37%), Positives = 240/416 (57%), Gaps = 22/416 (5%)
Query: 1 MSRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAK-VVIF 59
+S T++ L D++G R ++RVD+NVP + ++ + RI+ VP+I ++ AK VV+
Sbjct: 2 LSNKLTLDKL-DVKGKRVVMRVDFNVPMKNNQITNNQRIKAAVPSIKFCLDNGAKSVVLM 60
Query: 60 SHLGRPQSKSDKDC-SLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAEN 118
SHLGRP D SL V +S+L K++LF+ DC+G + ++ A+ + G +IL EN
Sbjct: 61 SHLGRPDGVPMPDKYSLEPVAVELKSLLGKDVLFLKDCVGPEVEKACANPAAGSVILLEN 120
Query: 119 VRFYSEEERNDPD---------------FVRMLSRNGDFYINDAFSVSHRAHASITGLSH 163
+RF+ EEE D F LS+ GD Y+NDAF +HRAH+S+ G+ +
Sbjct: 121 LRFHVEEEGKGKDASGNKVKAEPAKIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGV-N 179
Query: 164 LLPSYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGM 223
L G M+KEL+ ++P +AI+GG+KV+ KI L+ N++ KV++++IGGGM
Sbjct: 180 LPQKAGGFLMKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGM 239
Query: 224 ANSFLVAQ-GMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQV 282
A +FL M +G SL + + V + +A+++ +I +P D V A + T
Sbjct: 240 AFTFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQ 299
Query: 283 VS-AQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVA 341
+ A +P + LD G ++ + + + +A+ ++WNGP+GVFE E F R T + V
Sbjct: 300 ATVASGIPAGWMGLDCGPESSKKYAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVV 359
Query: 342 KLTKERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALS 397
K T R I+I GGGDT T A ++ ++VST GGA LE LEGK LPG+ ALS
Sbjct: 360 KATS-RGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDALS 414
>1hdi_A PGK, phosphoglycerate kinase; phosphotransferase, ternary complex,
glycolysis; HET: AMP 3PG; 1.8A {Sus scrofa} SCOP:
c.86.1.1 PDB: 1kf0_A* 1vjd_A* 1vjc_A* 3c3b_A* 2zgv_A*
3c3a_A* 3c39_A* 3c3c_A* 2p9t_A* 2p9q_A* 2paa_A*
Length = 413
Score = 360 bits (924), Expect = e-100
Identities = 153/411 (37%), Positives = 228/411 (55%), Gaps = 22/411 (5%)
Query: 6 TMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAK-VVIFSHLGR 64
T++ L +++G R ++RVD+NVP ++ + RI+ VP+I ++ AK VV+ SHLGR
Sbjct: 4 TLDKL-NVKGKRVVMRVDFNVPMAAAQITNNARIKAAVPSIKFCLDDGAKSVVLMSHLGR 62
Query: 65 PQSKSDKDC-SLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYS 123
P D SL V + +S L K +LF+ DC+G + ++ A + G +IL EN+RF+
Sbjct: 63 PDGSPMPDKYSLQPVAAELKSALGKAVLFLKDCVGPAVEKACADPAAGSVILLENLRFHV 122
Query: 124 EEERNDPD---------------FVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLPSY 168
EEE D F LS GD Y+NDAF +HRAH+S+ G+ +L
Sbjct: 123 EEEGKGKDASGNKAAGEPAKIKAFRASLSALGDVYVNDAFGTAHRAHSSMVGV-NLPKKA 181
Query: 169 IGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFL 228
M+KEL+ + ++P +AI+GG+KV+ KI L+ N++ KV++++IGGGMA +FL
Sbjct: 182 GAFLMKKELNYFAAAAESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFL 241
Query: 229 -VAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMK-TGIPTQVVSAQ 286
V M +G SL V + +A + +I +P D V A + Q A
Sbjct: 242 KVLNNMEIGTSLFDEAGKKIVKNLMSKAAANGVKITLPVDFVTADKFDEQAKIGQATVAS 301
Query: 287 SVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKE 346
+P + LD G K+ + +A+A+ ++WNGP+GVFE E F + T + V K T
Sbjct: 302 GIPAGWMGLDCGPKSSAKYSEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVVKATSR 361
Query: 347 RRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALS 397
I+I GGGDT T A + ++VST GGA LE LEGK LPG+ ALS
Sbjct: 362 G-CITIIGGGDTATCCAKWNTEDNVSHVSTGGGASLELLEGKVLPGVDALS 411
>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability,
crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga
maritima} SCOP: c.86.1.1
Length = 398
Score = 336 bits (862), Expect = 6e-93
Identities = 159/393 (40%), Positives = 249/393 (63%), Gaps = 3/393 (0%)
Query: 6 TMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGRP 65
T+ D+ D++G R ++RVD+NVP DG V D TRI +PTI +E+ AKV++ SHLGRP
Sbjct: 4 TIRDV-DLKGKRVIMRVDFNVPVKDGVVQDDTRIRAALPTIKYALEQGAKVILLSHLGRP 62
Query: 66 QSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEE 125
+ + + SL V +L K + FV +G + +++ L EG ++L EN RF+ E
Sbjct: 63 KGEPSPEFSLAPVAKRLSELLGKEVKFVPAVVGDEVKKAVEELKEGEVLLLENTRFHPGE 122
Query: 126 ERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLESCFS 185
+NDP+ + + D ++NDAF +HRAHAS G++ +PS G M+KE+ L
Sbjct: 123 TKNDPELAKFWASLADIHVNDAFGTAHRAHASNVGIAQFIPSVAGFLMEKEIKFLSKVTY 182
Query: 186 ESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFS 245
+KP V ++GG+KVS KI ++ NL++K D+++IGG M +FL A G VG S + D
Sbjct: 183 NPEKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDKI 242
Query: 246 DNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQ-SVPLDSIILDVGFKTVEY 304
D ++ +AK EI++P D V+A++++ G+ +VV +P + LD+G +T+E
Sbjct: 243 DLAKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIEL 302
Query: 305 IKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAH 364
KQ ++ A+TV+WNGP+GVFEI+ F T +VA +A LT+ + I++ GGGD+ A+
Sbjct: 303 FKQKLSDAKTVVWNGPMGVFEIDDFAEGTKQVALAIAALTE-KGAITVVGGGDSAAAVNK 361
Query: 365 AGISNEFTYVSTAGGAFLEWLEGKDLPGIVALS 397
G+ ++F++VST GGA LE+LEGK+LPGI ++
Sbjct: 362 FGLEDKFSHVSTGGGASLEFLEGKELPGIASMR 394
>1v6s_A Phosphoglycerate kinase; riken structural genomics/proteomics
initiative, RSGI, structural genomics, transferase;
1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A
Length = 390
Score = 314 bits (806), Expect = 2e-86
Identities = 157/395 (39%), Positives = 232/395 (58%), Gaps = 5/395 (1%)
Query: 4 LRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLG 63
+RT+ DL D +G R L+RVD+NVP DGKV D TRI +PT+ L+ A +V+ SHLG
Sbjct: 1 MRTLLDL-DPKGKRVLVRVDYNVPVQDGKVQDETRILESLPTLRHLLAGGASLVLLSHLG 59
Query: 64 RPQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYS 123
RP+ K SL V + L + + +L G ++L ENVRF
Sbjct: 60 RPKGPDPKY-SLAPVGEALRAHLPEARFAPFPPGSEEARREAEALRPGEVLLLENVRFEP 118
Query: 124 EEERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSMLESC 183
EE+NDP+ +R G+ ++ DAF +HRAHAS+ G++ LLP+Y G M+KE+ L
Sbjct: 119 GEEKNDPELSARYARLGEAFVLDAFGSAHRAHASVVGVARLLPAYAGFLMEKEVRALSRL 178
Query: 184 FSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLCQRD 243
+ ++P ++GG+KVS KI ++ +L+ ++D+L+IGG MA +FL A G VGRSL + D
Sbjct: 179 LKDPERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEED 238
Query: 244 FSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFKTVE 303
D + A+ + +P DVV A ++ G+ T+V A+++P+ + LD+G KT E
Sbjct: 239 RLDLAKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTRE 298
Query: 304 YIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALA 363
+ + ARTV WNGP+GVFE+ PFD T+ V +A L ++ GGGD++ A+
Sbjct: 299 AFARALEGARTVFWNGPMGVFEVPPFDEGTLAVGQAIAALEG---AFTVVGGGDSVAAVN 355
Query: 364 HAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALSG 398
G+ F +VST GGA LE+LE LPG+ L G
Sbjct: 356 RLGLKERFGHVSTGGGASLEFLEKGTLPGLEVLEG 390
>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycolysis,
mutant, permutation, permuted sequence, protein folding;
2.30A {Saccharomyces cerevisiae} SCOP: c.86.1.1
Length = 416
Score = 313 bits (804), Expect = 4e-86
Identities = 120/340 (35%), Positives = 185/340 (54%), Gaps = 18/340 (5%)
Query: 74 SLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYSEEE------- 126
SL V +S+L K++ F+NDC+G + ++ + + G +IL EN+R++ EEE
Sbjct: 5 SLAPVAKELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENLRYHIEEEGSRKVDG 64
Query: 127 -------RNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSM 179
+ F LS D YINDAF +HRAH+S+ G L G ++KEL
Sbjct: 65 QKVKASKEDVQKFRHELSSLADVYINDAFGTAHRAHSSMVGF-DLPQRAAGFLLEKELKY 123
Query: 180 LESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFL-VAQGMGVGRS 238
+P +AI+GG+KV+ KI L+ NL+ KVD ++IGGGMA +F V + +G S
Sbjct: 124 FGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDS 183
Query: 239 LCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPT-QVVSAQSVPLDSIILDV 297
+ + ++ V ++ +AK E+++P D ++A T V + +P LD
Sbjct: 184 IFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDN 243
Query: 298 GFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGD 357
G ++ + +A+A+T++WNGP GVFE E F T + V K + I GGGD
Sbjct: 244 GPESRKLFAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSAAG-NTVIIGGGD 302
Query: 358 TITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALS 397
T T G++++ ++VST GGA LE LEGK+LPG+ LS
Sbjct: 303 TATVAKKYGVTDKISHVSTGGGASLELLEGKELPGVAFLS 342
Score = 53.1 bits (127), Expect = 1e-07
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 6 TMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAK-VVIFSHLGR 64
++ DL D++ R +RVD+NVP K+ RI +PTI ++E + VV+ SHLGR
Sbjct: 352 SVQDL-DLKDKRVFIRVDFNVPLDGKKITSNQRIVAALPTIKYVLEHHPRYVVLASHLGR 410
Query: 65 PQSKSD 70
P + +
Sbjct: 411 PNGERN 416
>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A
{Escherichia coli}
Length = 387
Score = 312 bits (800), Expect = 9e-86
Identities = 152/399 (38%), Positives = 226/399 (56%), Gaps = 19/399 (4%)
Query: 1 MSRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFS 60
MS + M DL D+ G R +R D NVP DGKV RI +PTI +++ AKV++ S
Sbjct: 1 MS-VIKMTDL-DLAGKRVFIRADLNVPVKDGKVTSDARIRASLPTIELALKQGAKVMVTS 58
Query: 61 HLGRP-QSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENV 119
HLGRP + + +++ SL VV+ + L + V D + ++EG +++ ENV
Sbjct: 59 HLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDG------VDVAEGELVVLENV 112
Query: 120 RFYSEEERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLL-PSYIGRAMQKELS 178
RF E+++D + + D ++ DAF +HRA AS G+ + G + EL
Sbjct: 113 RFNKGEKKDDETLSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADVACAGPLLAAELD 172
Query: 179 MLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRS 238
L E +P+VAIVGGSKVSTK+T+L +L K D+L++GGG+AN+F+ AQG VG+S
Sbjct: 173 ALGKALKEPARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIANTFIAAQGHDVGKS 232
Query: 239 LCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVG 298
L + + + C I VP DV VA E P + S V D ILD+G
Sbjct: 233 LY-----EADLVDEAKRLLTTCNIPVPSDVRVATEFSETAPATLKSVNDVKADEQILDIG 287
Query: 299 FKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDT 358
+ + + +++ A+T++WNGP+GVFE F + T VA+ +A SIAGGGDT
Sbjct: 288 DASAQELAEILKNAKTILWNGPVGVFEFPNFRKGTEIVANAIADSE----AFSIAGGGDT 343
Query: 359 ITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALS 397
+ A+ GI+++ +Y+ST GGAFLE++EGK LP + L
Sbjct: 344 LAAIDLFGIADKISYISTGGGAFLEFVEGKVLPAVAMLE 382
>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis,
transferase, bisubstrate, analog; HET: BIS EPE; 1.60A
{Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A*
Length = 415
Score = 294 bits (754), Expect = 2e-80
Identities = 144/414 (34%), Positives = 234/414 (56%), Gaps = 24/414 (5%)
Query: 5 RTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLGR 64
+++N+ D++G + L+RVD+NVP +GK+ + RI +PT+ +++ + V+ SHLGR
Sbjct: 3 KSINEC-DLKGKKVLIRVDFNVPVKNGKITNDYRIRSALPTLKKVLTEGGSCVLMSHLGR 61
Query: 65 PQSKS----------------DKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASL 108
P+ + +L V +L + + F DC+ + ++ +
Sbjct: 62 PKGIPMAQAGKIRSTGGVPGFQQKATLKPVAKRLSELLLRPVTFAPDCLNAA--DVVSKM 119
Query: 109 SEGGIILAENVRFYSEEE----RNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHL 164
S G ++L ENVRFY EE ++ ++L+ GD YI+DAF +HR A++TG+ +
Sbjct: 120 SPGDVVLLENVRFYKEEGSKKAKDREAMAKILASYGDVYISDAFGTAHRDSATMTGIPKI 179
Query: 165 LP-SYIGRAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGM 223
L G M+KE+S +PLVAIVGG+KVS KI LL N+++++D L+IGG M
Sbjct: 180 LGNGAAGYLMEKEISYFAKVLGNPPRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAM 239
Query: 224 ANSFLVAQGMGVGRSLCQRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVV 283
A +FL AQG +G+S C+ + + +A+ ++I+P D V E K +
Sbjct: 240 AYTFLKAQGYSIGKSKCEESKLEFARSLLKKAEDRKVQVILPIDHVCHTEFKAVDSPLIT 299
Query: 284 SAQSVPLDSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKL 343
Q++P + LD+G KT+E Q I + ++ +WNGP+GVFE+ P+ + T +A + +
Sbjct: 300 EDQNIPEGHMALDIGPKTIEKYVQTIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRG 359
Query: 344 TKERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALS 397
T E ++SI GGGD+ +A +G + ++VST GGA LE LEGK LPG+ L
Sbjct: 360 THEHGLMSIIGGGDSASAAELSGEAKRMSHVSTGGGASLELLEGKTLPGVTVLD 413
>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
HET: 3PG; 2.10A {Pyrococcus horikoshii OT3}
Length = 410
Score = 282 bits (721), Expect = 1e-76
Identities = 117/406 (28%), Positives = 202/406 (49%), Gaps = 21/406 (5%)
Query: 4 LRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFSHLG 63
+ + D + LRVD N P DGK+ R + V+PTI L+E AKVVI +H G
Sbjct: 1 MFRLEDF-NFHNKTVFLRVDLNSPMKDGKIISDARFKAVLPTIRYLIESGAKVVIGTHQG 59
Query: 64 RPQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVRFYS 123
+P S+ + + + +L +++ ++ D G + I L G + + EN+RF +
Sbjct: 60 KP--YSEDYTTTEEHARVLSELLDQHVEYIEDIFGRYAREKIKELKSGEVAILENLRFSA 117
Query: 124 EE-------ERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQKE 176
EE E V+ LS+ D+ +NDAF+ +HR+ S+ G + + P +G M+KE
Sbjct: 118 EEVKNKPIEECEKTFLVKKLSKVIDYVVNDAFATAHRSQPSLVGFARIKPMIMGFLMEKE 177
Query: 177 LSMLESCFSESKKPLVAIVGGSKVSTKITLLINLVK--KVDKLVIGGGMANSFLVAQGMG 234
+ L + P + ++GG+KV + ++ N+++ + D ++ GG +AN F +A+G
Sbjct: 178 IEALMRAYYSKDSPKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANVFTLAKGFD 237
Query: 235 VGRSLCQRDFSDNV----HQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPL 290
+GR + + I P D V + + + + +
Sbjct: 238 LGRKNVEFMKKKGLLDYVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLH 297
Query: 291 DSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRII 350
I+D+G +T E ++++ +AR ++ NGP+GVFE E F TVEV +A
Sbjct: 298 QYQIMDIGKRTAEKYREILMKARIIVANGPMGVFEREEFAIGTVEVFKAIADSP----AF 353
Query: 351 SIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVAL 396
S+ GGG +I ++ GI+ T++ST GGA L + G++LP + AL
Sbjct: 354 SVLGGGHSIASIQKYGITG-ITHISTGGGAMLSFFAGEELPVLRAL 398
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 38.4 bits (89), Expect = 0.003
Identities = 55/307 (17%), Positives = 98/307 (31%), Gaps = 118/307 (38%)
Query: 146 DAFSVSHR----AHASITGLSHLLPSYIGRAMQKELSMLESCFSES-KKPLVAIVGGSKV 200
DA+S R +H S+ L+P+ A S L+ F++ +P +
Sbjct: 2 DAYST--RPLTLSHGSLE-HVLLVPT----ASFFIASQLQEQFNKILPEPTEGFAADDEP 54
Query: 201 STKITLL---INLV-KKVD-----------KLVIGGGMANSFLVAQGMGVGRSLCQRDF- 244
+T L+ + V V+ L + F + +
Sbjct: 55 TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCL-----TEF-------------ENCYL 96
Query: 245 -SDNVHQIA---------WEAKRSACEIIVPRDVVVAREM-KTGIPTQVVSAQSVPLDSI 293
+++H +A K E+I ++ + AR M K + SA
Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTK--ELI--KNYITARIMAKRPFDKKSNSA-------- 144
Query: 294 ILDVGFKTVEYIKQVIAQARTV-MWNGPLGVFEIEPFDRATVEVAH----Y---VAKLTK 345
L F+ V A+ V ++ G G + + F+ E+ Y V
Sbjct: 145 -L---FRAVG-----EGNAQLVAIFGGQ-GNTD-DYFE----ELRDLYQTYHVLV----- 184
Query: 346 ERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEGKD--------------LP 391
+I + +T++ L + E + T G LEWLE P
Sbjct: 185 -GDLIKFSA--ETLSELIRTTLDAEKVF--TQGLNILEWLENPSNTPDKDYLLSIPISCP 239
Query: 392 --GIVAL 396
G++ L
Sbjct: 240 LIGVIQL 246
Score = 28.8 bits (64), Expect = 2.3
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 27/66 (40%)
Query: 5 RTMNDLRDIRG------LRCL--LRVDW----NVP---FID---GKVAD----VTRIE-- 40
+DLR + G + C+ L V W +D G + R +
Sbjct: 463 FDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDG 522
Query: 41 ---RVV 43
RV+
Sbjct: 523 TGVRVI 528
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.46
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 12/36 (33%)
Query: 171 RAMQKELSMLESCFSESKKPLVAIVGGSKVSTKITL 206
+ +Q L + +++ P +AI K T+
Sbjct: 23 KKLQASLKL----YADDSAPALAI--------KATM 46
>2k5g_A Uncharacterized protein; structural genomiccs, protein structure,
structural genomics, PSI-2, protein structure
initiative; NMR {Bordetella parapertussis} SCOP:
d.129.3.5
Length = 191
Score = 28.2 bits (62), Expect = 3.4
Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 6/75 (8%)
Query: 323 VFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAGISNEFTYVSTAGG--A 380
+ EP + + E G L H +++ + AGG A
Sbjct: 92 LLRCEPPRVLALTWGGGAGEAPSEVLFELSEAGEQVRLVLTHTRLADRAAMLDVAGGWHA 151
Query: 381 FL----EWLEGKDLP 391
L L G+ P
Sbjct: 152 HLAVLAGKLAGQAPP 166
>1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme,
hydrolase, domain movement; HET: ATP; 1.70A {Escherichia
coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A
1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A
Length = 516
Score = 28.0 bits (61), Expect = 3.7
Identities = 12/72 (16%), Positives = 20/72 (27%)
Query: 328 PFDRATVEVAHYVAKLTKERRIISIAGGGDTITALAHAGISNEFTYVSTAGGAFLEWLEG 387
P +E + + + D I A H G + + S A G
Sbjct: 156 PEYFTDIEFRKPADEAKLVIQELQQTEKPDIIIAATHMGHYDNGEHGSNAPGDVEMARAL 215
Query: 388 KDLPGIVALSGH 399
+ + GH
Sbjct: 216 PAGSLAMIVGGH 227
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.70A {Bacillus halodurans}
Length = 561
Score = 27.3 bits (59), Expect = 6.2
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 7/34 (20%)
Query: 212 KKVDKLVIGGGMANSFLVAQGMGVGRSLCQRDFS 245
K++D LVIGGG+ G G+ R
Sbjct: 17 KQLDLLVIGGGIT-------GAGIALDAQVRGIQ 43
>3ff4_A Uncharacterized protein; structural genomics, PSI- 2, protein
structure initiative, midwest center for structural
genomics; 2.10A {Cytophaga hutchinsonii atcc 33406}
Length = 122
Score = 27.2 bits (60), Expect = 6.9
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 13/70 (18%)
Query: 33 VADVTRIERVVPTILELVEKKAKVVIFSHLGRPQSKSDKDCSLFKVVSIAESILHKNILF 92
V + + ++ K K VIF+ P +++++ + I I
Sbjct: 62 VTLYINPQNQLSEYNYILSLKPKRVIFN----PGTENEE------LEEILSE---NGIEP 108
Query: 93 VNDCIGSTLS 102
V C LS
Sbjct: 109 VIGCTLVMLS 118
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.321 0.136 0.393
Gapped
Lambda K H
0.267 0.0489 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,360,543
Number of extensions: 155142
Number of successful extensions: 645
Number of sequences better than 10.0: 1
Number of HSP's gapped: 601
Number of HSP's successfully gapped: 25
Length of query: 400
Length of database: 5,693,230
Length adjustment: 94
Effective length of query: 306
Effective length of database: 3,414,294
Effective search space: 1044773964
Effective search space used: 1044773964
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.7 bits)