BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780653|ref|YP_003065066.1| phosphoglycerate kinase
[Candidatus Liberibacter asiaticus str. psy62]
         (400 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780653|ref|YP_003065066.1| phosphoglycerate kinase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 400

 Score =  818 bits (2113), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/400 (100%), Positives = 400/400 (100%)

Query: 1   MSRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFS 60
           MSRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFS
Sbjct: 1   MSRLRTMNDLRDIRGLRCLLRVDWNVPFIDGKVADVTRIERVVPTILELVEKKAKVVIFS 60

Query: 61  HLGRPQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVR 120
           HLGRPQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVR
Sbjct: 61  HLGRPQSKSDKDCSLFKVVSIAESILHKNILFVNDCIGSTLSQSIASLSEGGIILAENVR 120

Query: 121 FYSEEERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSML 180
           FYSEEERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSML
Sbjct: 121 FYSEEERNDPDFVRMLSRNGDFYINDAFSVSHRAHASITGLSHLLPSYIGRAMQKELSML 180

Query: 181 ESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLC 240
           ESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLC
Sbjct: 181 ESCFSESKKPLVAIVGGSKVSTKITLLINLVKKVDKLVIGGGMANSFLVAQGMGVGRSLC 240

Query: 241 QRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFK 300
           QRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFK
Sbjct: 241 QRDFSDNVHQIAWEAKRSACEIIVPRDVVVAREMKTGIPTQVVSAQSVPLDSIILDVGFK 300

Query: 301 TVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTIT 360
           TVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTIT
Sbjct: 301 TVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAHYVAKLTKERRIISIAGGGDTIT 360

Query: 361 ALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALSGHC 400
           ALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALSGHC
Sbjct: 361 ALAHAGISNEFTYVSTAGGAFLEWLEGKDLPGIVALSGHC 400


>gi|254780870|ref|YP_003065283.1| prolyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 449

 Score = 26.6 bits (57), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 219 IGGGMANSFLVAQGMGVGRSLCQRDFSD 246
           IGG +++ F+V    G  +  C +DF D
Sbjct: 202 IGGDLSHEFIVLADTGETQVFCSKDFMD 229


>gi|254780974|ref|YP_003065387.1| adenylosuccinate lyase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 435

 Score = 24.3 bits (51), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 297 VGFKTVEYIKQVIAQARTVMWNGPLGVFEIEPFDRATVEVAH 338
           +G KT     QVIA+ R  M+   LGV      +R   E+ H
Sbjct: 205 MGLKTDPISSQVIARDRHAMYFSVLGVIA-SSIERVATEIRH 245


>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 597

 Score = 23.9 bits (50), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 7/75 (9%)

Query: 291 DSIILDVGFKTVEYIKQVIAQARTVMWNGPLGVFE-----IEPFDRATVEVAHYVAKLTK 345
           D+++ + G K     KQ ++ AR ++ N P+ +F+     ++      ++ A  +A L+K
Sbjct: 484 DTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTA--LATLSK 541

Query: 346 ERRIISIAGGGDTIT 360
            R  + IA    TIT
Sbjct: 542 NRTTLVIAHRLSTIT 556


>gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 483

 Score = 23.9 bits (50), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 8/26 (30%), Positives = 16/26 (61%)

Query: 21  RVDWNVPFIDGKVADVTRIERVVPTI 46
           RVD + P  D ++ D +R+  ++P +
Sbjct: 182 RVDESSPICDARLLDGSRVNVIIPPL 207


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.136    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 244,969
Number of Sequences: 1233
Number of extensions: 9862
Number of successful extensions: 32
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 6
length of query: 400
length of database: 328,796
effective HSP length: 76
effective length of query: 324
effective length of database: 235,088
effective search space: 76168512
effective search space used: 76168512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 39 (19.6 bits)