HHsearch alignment for GI: 254780654 and conserved domain: CHL00194
>CHL00194 ycf39 Ycf39; Provisional.
Probab=93.96 E-value=0.38 Score=27.97 Aligned_cols=98 Identities=14% Similarity=0.248 Sum_probs=55.3
Q ss_pred EEEEEEC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 1898856-686889999999968888728999606889999998875144125567408983653001656542110123
Q gi|254780654|r 3 CKVAING-FGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRD 81 (333)
Q Consensus 3 ikIgING-fGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~ 81 (333)
T Consensus 1 M~ILV~GATG~lGr~vVr~Ll~~---G~~Vr~lvR--np~ka~~l~-------~~G--ve------------~v~gDl~d 54 (319)
T CHL00194 1 MSLLVIGATGTLGRQIVRRALDE---GYQVKCLVR--NLRKAAFLK-------EWG--AE------------LVYGDLSL 54 (319)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC---CCCEEEEEC--CHHHHHHHH-------HCC--CE------------EEEECCCC
T ss_conf 97999899858999999999968---890899957--867632342-------159--67------------99942788
Q ss_pred CCCCC--CCCCCEEEEECCCCCCCCC-C------------CHHHHCCCCEEEE-ECCCCCC
Q ss_conf 33334--4656327860664333212-2------------0011058423433-0367887
Q gi|254780654|r 82 PQDLP--WGDVDVAMECTGFFVTQEK-A------------SLHLSNGSQRVLV-SAPCKGV 126 (333)
Q Consensus 82 p~~i~--W~~vDiViEcTG~f~~~~~-~------------~~HL~~GakkVIi-SaP~kd~ 126 (333)
T Consensus 55 pesl~~Al~GvdaVi~~~~~~~~~~~~~~~vd~~g~~~li~AAk~aGVkr~V~lS~lga~~ 115 (319)
T CHL00194 55 PETIPPALEGITAIIDASTSRPSDLNNAYQIDLEGKLALIEAAKAAKVKRFIFFSILNAEQ 115 (319)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 7789999659967999456677886208898898899999999984998899961356666