HHsearch alignment for GI: 254780654 and conserved domain: pfam01113
>pfam01113 DapB_N Dihydrodipicolinate reductase, N-terminus. Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH.
Probab=97.31 E-value=0.00081 Score=45.46 Aligned_cols=93 Identities=30% Similarity=0.381 Sum_probs=52.6
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 18988566-86889999999968888728999606889999998875144125567408983653001656542110123
Q gi|254780654|r 3 CKVAINGF-GRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRD 81 (333)
Q Consensus 3 ikIgINGf-GRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~~~Ll~yDS~hG~~~~~v~~~~~~l~in~~~i~i~~~~~ 81 (333)
T Consensus 1 ikV~i~Ga~GrMG~~i~~~i~~~--~~~~lv~~~~~~~~~~~-------------~~d~~~-----~~~~~~~~~~--~~ 58 (122)
T pfam01113 1 IKVAVVGASGRMGRELIKAILEA--PDFELVAAVDRPGSSLL-------------GSDAGE-----LAGPLGVPVT--DD 58 (122)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--CCCEEEEEEECCCCCCC-------------CCCCCC-----CCCCCCCEEC--CC
T ss_conf 98999889887899999999858--99689999943896122-------------543100-----1467871112--44
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCEEE
Q ss_conf 3333446563278606643332122001105842343
Q gi|254780654|r 82 PQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVL 118 (333)
Q Consensus 82 p~~i~W~~vDiViEcTG~f~~~~~~~~HL~~GakkVI 118 (333)
T Consensus 59 ~~~~-~~~~DVvIDFS~p~~~~~~~~~~~~~~~~~Vi 94 (122)
T pfam01113 59 LEEV-LADADVLIDFTTPEATLENLELALKHGKPLVI 94 (122)
T ss_pred HHHH-CCCCCEEEEECCHHHHHHHHHHHHHCCCCEEE
T ss_conf 7775-15788899906878999999999967998899