RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780654|ref|YP_003065067.1| Glyceraldehyde 3-Phosphate Dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] (333 letters) >gnl|CDD|30406 COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]. Length = 335 Score = 438 bits (1129), Expect = e-124 Identities = 188/333 (56%), Positives = 240/333 (72%), Gaps = 4/333 (1%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKII 63 KVAINGFGRIGR + RAA+E R D+ +VAINDL + +AHLL+YDSVHGRF GEV++ Sbjct: 3 KVAINGFGRIGRLVARAALE-RDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVK 61 Query: 64 GDTIDVGLGPIQVTSIRDPQDLPWGD--VDVAMECTGFFVTQEKASLHL-SNGSQRVLVS 120 D + V I+V + RDP +LPW D VD+ +ECTG F +EKA HL + G+++VL+S Sbjct: 62 DDALVVNGKGIKVLAERDPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLIS 121 Query: 121 APCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSY 180 AP K T+VYGVNH + +VSNASCTTNCL PV VL+ FGIEKG MTTVH+Y Sbjct: 122 APGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCLAPVAKVLNDAFGIEKGLMTTVHAY 181 Query: 181 TGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPNVSM 240 T DQ ++D H DL R+RAAA++++PTSTGAAKAV LVLP LKGKL G +IRVPTPNVS+ Sbjct: 182 TNDQKLVDGPHKDLRRARAAALNIIPTSTGAAKAVGLVLPELKGKLTGMAIRVPTPNVSV 241 Query: 241 VDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQTKV 300 VDL ++V ++EINA +K +E LK ILGY PLVS DFN +SSIF A T V Sbjct: 242 VDLTVELEKEVTVEEINAALKAASEIGLKGILGYTEDPLVSSDFNGDPHSSIFDASATIV 301 Query: 301 VSQNLLRVLVWYDNEWGFSNRMLDTASAMANLS 333 + NL++++ WYDNEWG+SNR++D + +A Sbjct: 302 LGGNLVKLVAWYDNEWGYSNRVVDLLAMVAKAL 334 >gnl|CDD|145777 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. C-terminal domain is a mixed alpha/antiparallel beta fold. Length = 158 Score = 228 bits (585), Expect = 1e-60 Identities = 90/158 (56%), Positives = 111/158 (70%), Gaps = 1/158 (0%) Query: 156 LVPVVHVLDKMFGIEKGYMTTVHSYTGDQHVLDAGH-SDLYRSRAAAISMVPTSTGAAKA 214 L P+ VL+ FGIEKG MTTVH+YT DQ ++D H DL R RAAA +++PTSTGAAKA Sbjct: 1 LAPLAKVLNDNFGIEKGLMTTVHAYTADQKLVDGPHHKDLRRGRAAAPNIIPTSTGAAKA 60 Query: 215 VELVLPNLKGKLDGSSIRVPTPNVSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGY 274 V LVLP LKGKL G + RVPTPNVS+VDL + V ++E+NA +K AEG LK ILGY Sbjct: 61 VGLVLPELKGKLTGMAFRVPTPNVSVVDLTVELEKPVTVEEVNAALKEAAEGALKGILGY 120 Query: 275 VTLPLVSVDFNHTSYSSIFAADQTKVVSQNLLRVLVWY 312 PLVS DF +SSIF A T V++ N ++V+ WY Sbjct: 121 TEEPLVSSDFVGDPHSSIFDAKATIVLNGNFVKVVAWY 158 >gnl|CDD|35876 KOG0657, KOG0657, KOG0657, Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism]. Length = 285 Score = 227 bits (581), Expect = 2e-60 Identities = 120/312 (38%), Positives = 167/312 (53%), Gaps = 37/312 (11%) Query: 24 SRRDDVRIVAIND-LNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRDP 82 +R+ V +VAIND + +A++L+YDS HG+F G VK + + PI + RDP Sbjct: 6 LQRNSVDVVAINDPFIDLNYLAYMLKYDSTHGKFHGTVKAENFKLIINGNPITIFQFRDP 65 Query: 83 QDLPWGD--VDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCKGVKKTIVYGVNHQSLN 140 +PWG D+ +E TG F T EK H G+++V++SAP V GVN + + Sbjct: 66 AKIPWGAKGADIVVESTGVFTTMEKPGKHFQGGAKKVIISAPSADAPMF-VMGVNGEKYD 124 Query: 141 KEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSYTGDQHVLDAGHSDLYRS-RA 199 ++SNASCTTNCL P+ V+ FGI +G MTTVH+ T Q +D L+R R Sbjct: 125 NSLDIISNASCTTNCLAPLAKVIHDNFGIMEGLMTTVHAITATQKTVDGPSGKLWRDGRR 184 Query: 200 AAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPNVSMVDLKCVTSRDVNIDEINAT 259 A +++P STGAAKAV V+P L GKL G + RVPTP VS+VDL C + D+I Sbjct: 185 ALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTP-VSVVDLTCHLEKPAKYDDIKKV 243 Query: 260 MKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQTKVVSQNLLRVLVWYDNEWGFS 319 +K +E LK IL + +S WYDNE+G+S Sbjct: 244 VKLASEIPLKGIL-----------------------TEHHFIS--------WYDNEFGYS 272 Query: 320 NRMLDTASAMAN 331 NR++D MA+ Sbjct: 273 NRVVDLMEHMAS 284 >gnl|CDD|109113 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold. Length = 150 Score = 216 bits (553), Expect = 6e-57 Identities = 83/151 (54%), Positives = 107/151 (70%), Gaps = 5/151 (3%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKII 63 KV INGFGRIGR +LRAA+ +DD+ +VAINDL ET+A+LL+YDSVHGRF GEV++ Sbjct: 2 KVGINGFGRIGRLVLRAALA--QDDLEVVAINDLTDPETLAYLLKYDSVHGRFDGEVEVD 59 Query: 64 GDTIDVGLGPIQVTSIRDPQDLPWGD--VDVAMECTGFFVTQEKASLHLSNGSQRVLVSA 121 D + V I+V + RDP +LPWG+ VD+ +E TG F T EKA HL G+++V++SA Sbjct: 60 EDGLIVNGKKIKVFAERDPAELPWGELGVDIVVESTGVFTTAEKAEAHLKAGAKKVIISA 119 Query: 122 PCKGVK-KTIVYGVNHQSLNKEDKVVSNASC 151 P K T VYGVNH + ED +VSNASC Sbjct: 120 PAKDDADPTFVYGVNHDDYDPEDDIVSNASC 150 >gnl|CDD|36846 KOG1633, KOG1633, KOG1633, F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics]. Length = 776 Score = 34.6 bits (79), Expect = 0.036 Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 14/103 (13%) Query: 227 DGSSIRVPTPNVSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLP-------L 279 DG + +P+P+ ++ D+K + D ID ++ + + LK + Y + P + Sbjct: 26 DGLGMTLPSPDFTVNDVKELVGSDRMIDVVDVNTQKDCKMTLKEFVKYYSSPQRKRLYNV 85 Query: 280 VSVDFNHTSYSSIFAADQTKVVSQNLLRVLVWYDNEWGFSNRM 322 +S++F+ T S++ V S ++R L W DN+W +M Sbjct: 86 ISLEFSDTRLSNL-------VESPEIVRKLDWVDNQWPDDLKM 121 >gnl|CDD|30485 COG0136, Asd, Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]. Length = 334 Score = 34.4 bits (79), Expect = 0.039 Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 30/165 (18%) Query: 130 IVYGVNHQSL---NKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVH--SYTGDQ 184 +V VN + L K +++N +C+T LV + L FGI++ ++T S G + Sbjct: 109 VVPEVNPEHLIDYQKRGFIIANPNCSTIQLVLALKPLHDAFGIKRVVVSTYQAVSGAGAE 168 Query: 185 HV---------LDAGHSDLYRSRAAAISMVPTSTGAAKAVEL------------VLPNLK 223 L G L A +++P G +L + Sbjct: 169 GGVELAGQTDALLNGIPILPIGYPLAFNVIPHIDGFLDNGYTKEEWKIEAETRKILGDPD 228 Query: 224 GKLDGSSIRVP--TPNVSMVDLKCVTSRDVNIDEINATMKYFAEG 266 K+ + +RVP + V ++ +DV+ +EI + A G Sbjct: 229 IKVSATCVRVPVFYGHSEAVTVE--FKKDVDPEEIREELLPSAPG 271 >gnl|CDD|31017 COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]. Length = 342 Score = 29.8 bits (66), Expect = 1.2 Identities = 9/38 (23%), Positives = 17/38 (44%) Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38 + +V I G G I A+ + + +VA+ D + Sbjct: 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRD 39 >gnl|CDD|37903 KOG2692, KOG2692, KOG2692, Sialyltransferase [Carbohydrate transport and metabolism]. Length = 376 Score = 28.5 bits (63), Expect = 2.6 Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 5/68 (7%) Query: 120 SAPCKGVK-----KTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYM 174 AP KG + KT + VN S+ + V + + + Sbjct: 186 LAPTKGYEKDVGSKTTLRTVNPPSVPTLLRNYLLDEPKRVTFVVWLPFKNMSLLWLPAFY 245 Query: 175 TTVHSYTG 182 TV+ TG Sbjct: 246 NTVNLRTG 253 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.319 0.134 0.393 Gapped Lambda K H 0.267 0.0783 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 3,784,087 Number of extensions: 191143 Number of successful extensions: 462 Number of sequences better than 10.0: 1 Number of HSP's gapped: 450 Number of HSP's successfully gapped: 14 Length of query: 333 Length of database: 6,263,737 Length adjustment: 94 Effective length of query: 239 Effective length of database: 4,232,491 Effective search space: 1011565349 Effective search space used: 1011565349 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.0 bits)