RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780654|ref|YP_003065067.1| Glyceraldehyde 3-Phosphate
Dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
(333 letters)
>gnl|CDD|30406 COG0057, GapA, Glyceraldehyde-3-phosphate
dehydrogenase/erythrose-4-phosphate dehydrogenase
[Carbohydrate transport and metabolism].
Length = 335
Score = 438 bits (1129), Expect = e-124
Identities = 188/333 (56%), Positives = 240/333 (72%), Gaps = 4/333 (1%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKII 63
KVAINGFGRIGR + RAA+E R D+ +VAINDL + +AHLL+YDSVHGRF GEV++
Sbjct: 3 KVAINGFGRIGRLVARAALE-RDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVK 61
Query: 64 GDTIDVGLGPIQVTSIRDPQDLPWGD--VDVAMECTGFFVTQEKASLHL-SNGSQRVLVS 120
D + V I+V + RDP +LPW D VD+ +ECTG F +EKA HL + G+++VL+S
Sbjct: 62 DDALVVNGKGIKVLAERDPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLIS 121
Query: 121 APCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSY 180
AP K T+VYGVNH + +VSNASCTTNCL PV VL+ FGIEKG MTTVH+Y
Sbjct: 122 APGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCLAPVAKVLNDAFGIEKGLMTTVHAY 181
Query: 181 TGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPNVSM 240
T DQ ++D H DL R+RAAA++++PTSTGAAKAV LVLP LKGKL G +IRVPTPNVS+
Sbjct: 182 TNDQKLVDGPHKDLRRARAAALNIIPTSTGAAKAVGLVLPELKGKLTGMAIRVPTPNVSV 241
Query: 241 VDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQTKV 300
VDL ++V ++EINA +K +E LK ILGY PLVS DFN +SSIF A T V
Sbjct: 242 VDLTVELEKEVTVEEINAALKAASEIGLKGILGYTEDPLVSSDFNGDPHSSIFDASATIV 301
Query: 301 VSQNLLRVLVWYDNEWGFSNRMLDTASAMANLS 333
+ NL++++ WYDNEWG+SNR++D + +A
Sbjct: 302 LGGNLVKLVAWYDNEWGYSNRVVDLLAMVAKAL 334
>gnl|CDD|145777 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydrogenase,
C-terminal domain. GAPDH is a tetrameric NAD-binding
enzyme involved in glycolysis and glyconeogenesis.
C-terminal domain is a mixed alpha/antiparallel beta
fold.
Length = 158
Score = 228 bits (585), Expect = 1e-60
Identities = 90/158 (56%), Positives = 111/158 (70%), Gaps = 1/158 (0%)
Query: 156 LVPVVHVLDKMFGIEKGYMTTVHSYTGDQHVLDAGH-SDLYRSRAAAISMVPTSTGAAKA 214
L P+ VL+ FGIEKG MTTVH+YT DQ ++D H DL R RAAA +++PTSTGAAKA
Sbjct: 1 LAPLAKVLNDNFGIEKGLMTTVHAYTADQKLVDGPHHKDLRRGRAAAPNIIPTSTGAAKA 60
Query: 215 VELVLPNLKGKLDGSSIRVPTPNVSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGY 274
V LVLP LKGKL G + RVPTPNVS+VDL + V ++E+NA +K AEG LK ILGY
Sbjct: 61 VGLVLPELKGKLTGMAFRVPTPNVSVVDLTVELEKPVTVEEVNAALKEAAEGALKGILGY 120
Query: 275 VTLPLVSVDFNHTSYSSIFAADQTKVVSQNLLRVLVWY 312
PLVS DF +SSIF A T V++ N ++V+ WY
Sbjct: 121 TEEPLVSSDFVGDPHSSIFDAKATIVLNGNFVKVVAWY 158
>gnl|CDD|35876 KOG0657, KOG0657, KOG0657, Glyceraldehyde 3-phosphate dehydrogenase
[Carbohydrate transport and metabolism].
Length = 285
Score = 227 bits (581), Expect = 2e-60
Identities = 120/312 (38%), Positives = 167/312 (53%), Gaps = 37/312 (11%)
Query: 24 SRRDDVRIVAIND-LNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGLGPIQVTSIRDP 82
+R+ V +VAIND + +A++L+YDS HG+F G VK + + PI + RDP
Sbjct: 6 LQRNSVDVVAINDPFIDLNYLAYMLKYDSTHGKFHGTVKAENFKLIINGNPITIFQFRDP 65
Query: 83 QDLPWGD--VDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCKGVKKTIVYGVNHQSLN 140
+PWG D+ +E TG F T EK H G+++V++SAP V GVN + +
Sbjct: 66 AKIPWGAKGADIVVESTGVFTTMEKPGKHFQGGAKKVIISAPSADAPMF-VMGVNGEKYD 124
Query: 141 KEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSYTGDQHVLDAGHSDLYRS-RA 199
++SNASCTTNCL P+ V+ FGI +G MTTVH+ T Q +D L+R R
Sbjct: 125 NSLDIISNASCTTNCLAPLAKVIHDNFGIMEGLMTTVHAITATQKTVDGPSGKLWRDGRR 184
Query: 200 AAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPNVSMVDLKCVTSRDVNIDEINAT 259
A +++P STGAAKAV V+P L GKL G + RVPTP VS+VDL C + D+I
Sbjct: 185 ALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTP-VSVVDLTCHLEKPAKYDDIKKV 243
Query: 260 MKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQTKVVSQNLLRVLVWYDNEWGFS 319
+K +E LK IL + +S WYDNE+G+S
Sbjct: 244 VKLASEIPLKGIL-----------------------TEHHFIS--------WYDNEFGYS 272
Query: 320 NRMLDTASAMAN 331
NR++D MA+
Sbjct: 273 NRVVDLMEHMAS 284
>gnl|CDD|109113 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, NAD
binding domain. GAPDH is a tetrameric NAD-binding
enzyme involved in glycolysis and glyconeogenesis.
N-terminal domain is a Rossmann NAD(P) binding fold.
Length = 150
Score = 216 bits (553), Expect = 6e-57
Identities = 83/151 (54%), Positives = 107/151 (70%), Gaps = 5/151 (3%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKII 63
KV INGFGRIGR +LRAA+ +DD+ +VAINDL ET+A+LL+YDSVHGRF GEV++
Sbjct: 2 KVGINGFGRIGRLVLRAALA--QDDLEVVAINDLTDPETLAYLLKYDSVHGRFDGEVEVD 59
Query: 64 GDTIDVGLGPIQVTSIRDPQDLPWGD--VDVAMECTGFFVTQEKASLHLSNGSQRVLVSA 121
D + V I+V + RDP +LPWG+ VD+ +E TG F T EKA HL G+++V++SA
Sbjct: 60 EDGLIVNGKKIKVFAERDPAELPWGELGVDIVVESTGVFTTAEKAEAHLKAGAKKVIISA 119
Query: 122 PCKGVK-KTIVYGVNHQSLNKEDKVVSNASC 151
P K T VYGVNH + ED +VSNASC
Sbjct: 120 PAKDDADPTFVYGVNHDDYDPEDDIVSNASC 150
>gnl|CDD|36846 KOG1633, KOG1633, KOG1633, F-box protein JEMMA and related proteins
with JmjC, PHD, F-box and LRR domains [Chromatin
structure and dynamics].
Length = 776
Score = 34.6 bits (79), Expect = 0.036
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 14/103 (13%)
Query: 227 DGSSIRVPTPNVSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLP-------L 279
DG + +P+P+ ++ D+K + D ID ++ + + LK + Y + P +
Sbjct: 26 DGLGMTLPSPDFTVNDVKELVGSDRMIDVVDVNTQKDCKMTLKEFVKYYSSPQRKRLYNV 85
Query: 280 VSVDFNHTSYSSIFAADQTKVVSQNLLRVLVWYDNEWGFSNRM 322
+S++F+ T S++ V S ++R L W DN+W +M
Sbjct: 86 ISLEFSDTRLSNL-------VESPEIVRKLDWVDNQWPDDLKM 121
>gnl|CDD|30485 COG0136, Asd, Aspartate-semialdehyde dehydrogenase [Amino acid
transport and metabolism].
Length = 334
Score = 34.4 bits (79), Expect = 0.039
Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 30/165 (18%)
Query: 130 IVYGVNHQSL---NKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVH--SYTGDQ 184
+V VN + L K +++N +C+T LV + L FGI++ ++T S G +
Sbjct: 109 VVPEVNPEHLIDYQKRGFIIANPNCSTIQLVLALKPLHDAFGIKRVVVSTYQAVSGAGAE 168
Query: 185 HV---------LDAGHSDLYRSRAAAISMVPTSTGAAKAVEL------------VLPNLK 223
L G L A +++P G +L +
Sbjct: 169 GGVELAGQTDALLNGIPILPIGYPLAFNVIPHIDGFLDNGYTKEEWKIEAETRKILGDPD 228
Query: 224 GKLDGSSIRVP--TPNVSMVDLKCVTSRDVNIDEINATMKYFAEG 266
K+ + +RVP + V ++ +DV+ +EI + A G
Sbjct: 229 IKVSATCVRVPVFYGHSEAVTVE--FKKDVDPEEIREELLPSAPG 271
>gnl|CDD|31017 COG0673, MviM, Predicted dehydrogenases and related proteins
[General function prediction only].
Length = 342
Score = 29.8 bits (66), Expect = 1.2
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38
+ +V I G G I A+ + + +VA+ D +
Sbjct: 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRD 39
>gnl|CDD|37903 KOG2692, KOG2692, KOG2692, Sialyltransferase [Carbohydrate
transport and metabolism].
Length = 376
Score = 28.5 bits (63), Expect = 2.6
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 5/68 (7%)
Query: 120 SAPCKGVK-----KTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYM 174
AP KG + KT + VN S+ + V + + +
Sbjct: 186 LAPTKGYEKDVGSKTTLRTVNPPSVPTLLRNYLLDEPKRVTFVVWLPFKNMSLLWLPAFY 245
Query: 175 TTVHSYTG 182
TV+ TG
Sbjct: 246 NTVNLRTG 253
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.319 0.134 0.393
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,784,087
Number of extensions: 191143
Number of successful extensions: 462
Number of sequences better than 10.0: 1
Number of HSP's gapped: 450
Number of HSP's successfully gapped: 14
Length of query: 333
Length of database: 6,263,737
Length adjustment: 94
Effective length of query: 239
Effective length of database: 4,232,491
Effective search space: 1011565349
Effective search space used: 1011565349
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)