RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780654|ref|YP_003065067.1| Glyceraldehyde 3-Phosphate Dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] (333 letters) >3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* Length = 334 Score = 451 bits (1161), Expect = e-127 Identities = 171/331 (51%), Positives = 229/331 (69%), Gaps = 5/331 (1%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKII 63 KV INGFGRIGR + RAA++ D+ +VA+NDL T+AHLL+YDSVHGR EV + Sbjct: 3 KVGINGFGRIGRNVFRAALK--NPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVN 60 Query: 64 GDTIDVGLGPIQVTSIRDPQDLPWG--DVDVAMECTGFFVTQEKASLHLSNGSQRVLVSA 121 G+ + V I V + RDP++L WG VD+ +E TG F +E A+ HL G+++V++SA Sbjct: 61 GNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISA 120 Query: 122 PCKGVKKTIVYGVNHQSLNK-EDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSY 180 P K TIV GVN + V+SNASCTTNCL P VL + FGI +G MTTVHSY Sbjct: 121 PAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSY 180 Query: 181 TGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPNVSM 240 T DQ +LD H DL R+RAAA S++PT+TGAAKAV LVLP LKGKL+G ++RVPTPNVS+ Sbjct: 181 TNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSV 240 Query: 241 VDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQTKV 300 VDL ++V ++E+NA +K AEG+LK IL Y PLVS D+N ++ SS A T V Sbjct: 241 VDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMV 300 Query: 301 VSQNLLRVLVWYDNEWGFSNRMLDTASAMAN 331 + +++V+ WYDNE G+S+R++D A+ +A+ Sbjct: 301 IDGKMVKVVSWYDNETGYSHRVVDLAAYIAS 331 >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 Length = 335 Score = 444 bits (1145), Expect = e-126 Identities = 147/332 (44%), Positives = 200/332 (60%), Gaps = 7/332 (2%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAIND-LNSIETMAHLLRYDSVHGRFPGEVKI 62 KV +NGFGRIGR + RAA V IVAIND + M ++ +YDS HG+F G VK Sbjct: 5 KVGVNGFGRIGRLVTRAAFN--SGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKA 62 Query: 63 IGDTIDVGLGPIQVTSIRDPQDLPWGD--VDVAMECTGFFVTQEKASLHLSNGSQRVLVS 120 + + PI + RDP + WGD + +E TG F T EKA HL G++RV++S Sbjct: 63 ENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIIS 122 Query: 121 APCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSY 180 AP V GVNH+ + K++SNASCTTNCL P+ V+ FGI +G MTTVH+ Sbjct: 123 APSADAP-MFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAI 181 Query: 181 TGDQHVLDAGHSDLYR-SRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPNVS 239 T Q +D L+R R A +++P STGAAKAV V+P L GKL G + RVPT NVS Sbjct: 182 TATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANVS 241 Query: 240 MVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQTK 299 +VDL C + D+I +K +EG LK ILGY +VS DFN ++SS F A Sbjct: 242 VVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAGI 301 Query: 300 VVSQNLLRVLVWYDNEWGFSNRMLDTASAMAN 331 ++ + ++++ WYDNE+G+SNR++D + MA+ Sbjct: 302 ALNDHFVKLISWYDNEFGYSNRVVDLMAHMAS 333 >3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O* Length = 338 Score = 439 bits (1131), Expect = e-124 Identities = 149/341 (43%), Positives = 212/341 (62%), Gaps = 14/341 (4%) Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEV 60 M KVAINGFGRIGR R E + + +VA+NDL + +AHLL+YD++ GRF GEV Sbjct: 3 MAVKVAINGFGRIGRLAFRRIQE--VEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEV 60 Query: 61 KIIGDTIDVGLGPIQVTSIRDPQDLPWGD--VDVAMECTGFFVTQEKASLHLSNGSQRVL 118 +++ V ++ S D LPW D +DV +ECTGF+ ++KA H+ G+++VL Sbjct: 61 EVVDGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVL 120 Query: 119 VSAPCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVH 178 +SAP G KTIV+ NHQ L+ + VVS ASCTTN L PV VL+ FG+ +G MTT+H Sbjct: 121 ISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIH 180 Query: 179 SYTGDQHVLDAGH--SDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTP 236 +YTGDQ+ DA H D R+RAAA +++P STGAAKA+ V+P + GKLDG + RVP Sbjct: 181 AYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVA 240 Query: 237 NVSMVDLKCVTSR-DVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAA 295 S+ +L V + DV ++++N MK + GY +VS D +Y S+F A Sbjct: 241 TGSLTELTVVLEKQDVTVEQVNEAMKNASNE----SFGYTEDEIVSSDVVGMTYGSLFDA 296 Query: 296 DQTKVVSQ---NLLRVLVWYDNEWGFSNRMLDTASAMANLS 333 QT+V+S L++V WYDNE ++ +++ T + +A LS Sbjct: 297 TQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAELS 337 >1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A* Length = 335 Score = 433 bits (1115), Expect = e-122 Identities = 181/334 (54%), Positives = 231/334 (69%), Gaps = 5/334 (1%) Query: 4 KVAINGFGRIGRCILRAAVES-RRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKI 62 +VAING+GRIGR ILRA E + D+ IVAINDL +T AHL RYD+ HG+FPG V + Sbjct: 3 RVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSV 62 Query: 63 IGDTIDVGLGPIQVTSIRDPQDLPWGD--VDVAMECTGFFVTQEKASLHLSNGSQRVLVS 120 G + V I+V + R+P LPWG VDV +ECTGFF T+EKA H+ G+++V++S Sbjct: 63 NGSYMVVNGDKIRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIIS 122 Query: 121 APCKG-VKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHS 179 AP V T+VYGVNH +L D V+SNASCTTNCL P+V L+ G++ G MTTVH+ Sbjct: 123 APGGADVDATVVYGVNHGTLKSTDTVISNASCTTNCLAPLVKPLNDKLGLQDGLMTTVHA 182 Query: 180 YTGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPNVS 239 YT +Q + D H DL R+R+A +SM+PT TGAA AV VLP L GKL+G +IRVPT NVS Sbjct: 183 YTNNQVLTDVYHEDLRRARSATMSMIPTKTGAAAAVGDVLPELDGKLNGYAIRVPTINVS 242 Query: 240 MVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQTK 299 +VDL V R+ ++E+N +K +EG+LK IL Y T PLVSVD+NH SS A TK Sbjct: 243 IVDLSFVAKRNTTVEEVNGILKAASEGELKGILDYNTEPLVSVDYNHDPASSTVDASLTK 302 Query: 300 VVSQNLLRVLVWYDNEWGFSNRMLDTASAMANLS 333 VS L++V WYDNEWGFSNRMLDT A+ + + Sbjct: 303 -VSGRLVKVSSWYDNEWGFSNRMLDTTVALMSAA 335 >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O Length = 337 Score = 430 bits (1107), Expect = e-121 Identities = 146/333 (43%), Positives = 207/333 (62%), Gaps = 9/333 (2%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAIND-LNSIETMAHLLRYDSVHGRFPGEVKI 62 K+ INGFGRIGR + R A++ +DV +VA+ND + + M ++ +YD+VHG++ Sbjct: 5 KIGINGFGRIGRLVARVALQ--SEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIK 62 Query: 63 I--GDTIDVGLGPIQVTSIRDPQDLPWGD--VDVAMECTGFFVTQEKASLHLSNGSQRVL 118 I T+ +G P+ V IR+P ++PW + + +E TG F +EKA+ HL G+++V+ Sbjct: 63 IKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVV 122 Query: 119 VSAPCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVH 178 +SAP K V GVN + +VSNASCTTNCL P+ V+ FGI +G MTTVH Sbjct: 123 ISAPSKDAP-MFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVH 181 Query: 179 SYTGDQHVLDAGHS-DLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPN 237 + T Q +D S D RAA+ +++P+STGAAKAV VLP+L GKL G S RVPT + Sbjct: 182 AITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVD 241 Query: 238 VSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQ 297 VS+VDL + + D I + +K +EG LK I+GYV LVS DF S SSIF A Sbjct: 242 VSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKA 301 Query: 298 TKVVSQNLLRVLVWYDNEWGFSNRMLDTASAMA 330 ++ N ++++ WYDNEWG+SNR++D MA Sbjct: 302 GIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMA 334 >3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycosomal; irreversible inhibitor, protein-ligand complex,X-RAY, glycolysis, NAD; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A* Length = 359 Score = 428 bits (1101), Expect = e-120 Identities = 151/352 (42%), Positives = 214/352 (60%), Gaps = 21/352 (5%) Query: 1 MVCKVAINGFGRIGRCILRAAVES--RRDDVRIVAINDLN-SIETMAHLLRYDSVHGRFP 57 M KV INGFGRIGR + +A E ++ +VA+ D+N E A+ +RYD+VHG+F Sbjct: 1 MPIKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFK 60 Query: 58 GEVKIIGDTIDVGLG---------PIQVTSIRDPQDLPWGD--VDVAMECTGFFVTQEKA 106 EV + V + V + R+P DLPWG V+ +E TG F + A Sbjct: 61 YEVTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAA 120 Query: 107 SLHLSNGSQRVLVSAPCKGVKKTIVYGVNHQSL-NKEDKVVSNASCTTNCLVPVVHV-LD 164 HL G+++V++SAP G KT+V GVNH E VVSNASCTTNCL P+VHV + Sbjct: 121 EGHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNASCTTNCLAPIVHVLVK 180 Query: 165 KMFGIEKGYMTTVHSYTGDQHVLDA-GHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLK 223 + FG++ G MTT+HSYT Q +D D RAAA++++P++TGAAKAV +V+P+ + Sbjct: 181 EGFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTQ 240 Query: 224 GKLDGSSIRVPTPNVSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVD 283 GKL G S RVPTP+VS+VDL +RD +I EI+A +K ++ +K ILGY LVS D Sbjct: 241 GKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILGYTDEELVSAD 300 Query: 284 FNHTSYSSIFAADQTKVV----SQNLLRVLVWYDNEWGFSNRMLDTASAMAN 331 F + + SSI+ + T + +++ WYDNEWG+S+R++D MA+ Sbjct: 301 FINDNRSSIYDSKATLQNNLPKERRFFKIVSWYDNEWGYSHRVVDLVRHMAS 352 >3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} Length = 335 Score = 426 bits (1097), Expect = e-120 Identities = 211/334 (63%), Positives = 260/334 (77%), Gaps = 2/334 (0%) Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEV 60 M +VAINGFGRIGR ILRA VES R D+++VAINDL +ET AHLLRYDSVHGRFP EV Sbjct: 1 MAVRVAINGFGRIGRNILRAIVESGRTDIQVVAINDLGPVETNAHLLRYDSVHGRFPKEV 60 Query: 61 KIIGDTIDVGLGPIQVTSIRDPQDLPWGD--VDVAMECTGFFVTQEKASLHLSNGSQRVL 118 ++ GDTIDVG GPI+V ++R+P +LPW + VD+A+ECTG F +++KA+LHL G++RV+ Sbjct: 61 EVAGDTIDVGYGPIKVHAVRNPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRVI 120 Query: 119 VSAPCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVH 178 VSAP G T+VYGVN+ L K+ V+SNASCTTNCL PV VL+ GIEKG+MTT+H Sbjct: 121 VSAPADGADLTVVYGVNNDKLTKDHLVISNASCTTNCLAPVAQVLNDTIGIEKGFMTTIH 180 Query: 179 SYTGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPNV 238 SYTGDQ LD H DLYR+RAAA+SM+PTSTGAAKAV LVLP LKGKLDG +IRVPTPNV Sbjct: 181 SYTGDQPTLDTMHKDLYRARAAALSMIPTSTGAAKAVGLVLPELKGKLDGVAIRVPTPNV 240 Query: 239 SMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQT 298 S+VDL + R+ ++E+N ++ A G LK ILGY LVS DFNH S+SS+F DQT Sbjct: 241 SVVDLTFIAKRETTVEEVNNAIREAANGRLKGILGYTDEKLVSHDFNHDSHSSVFHTDQT 300 Query: 299 KVVSQNLLRVLVWYDNEWGFSNRMLDTASAMANL 332 KV+ ++R+L WYDNEWGFS+RM DTA A+ L Sbjct: 301 KVMDGTMVRILSWYDNEWGFSSRMSDTAVALGKL 334 >2i5p_O GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; rossmann fold, APO form, dimer, oxidoreductase; HET: GLC; 2.30A {Kluyveromyces marxianus} Length = 342 Score = 423 bits (1089), Expect = e-119 Identities = 143/334 (42%), Positives = 209/334 (62%), Gaps = 8/334 (2%) Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAIND-LNSIETMAHLLRYDSVHGRFPGE 59 + +AINGFGRIGR +LR A+E R ++ +VAIND S++ A++ +YDS HG++ GE Sbjct: 13 QMVSIAINGFGRIGRLVLRIALE--RKNIDVVAINDPFISVDYAAYMFKYDSTHGKYKGE 70 Query: 60 VKIIGDTIDVGLGPIQVTSIRDPQDLPWGD--VDVAMECTGFFVTQEKASLHLSNGSQRV 117 V G + + + V +DP LPWG VD+A++ TG F + A H+ G+++V Sbjct: 71 VSHDGSNLIINGKKVAVFQEKDPATLPWGKLGVDIAVDSTGVFKELDSAQKHIDAGAKKV 130 Query: 118 LVSAPCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTV 177 +++AP K V GVN N +K+VSNASCTTNCL P+ +++ FGIE+G MTTV Sbjct: 131 VITAPSKTAPM-FVVGVNEDKYNG-EKIVSNASCTTNCLAPIAKIINDEFGIEEGLMTTV 188 Query: 178 HSYTGDQHVLDA-GHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTP 236 HS T Q +D H D R A+ +++P+STGAAKAV VLP L+GKL G + RVPT Sbjct: 189 HSITATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTT 248 Query: 237 NVSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAAD 296 +VS+VDL + DEI A +K +EG LK+++GY +VS DF ++S+IF A Sbjct: 249 DVSVVDLTVKLVKAATYDEIKAAVKKVSEGKLKDVVGYTEDAVVSSDFLGDTHSTIFDAA 308 Query: 297 QTKVVSQNLLRVLVWYDNEWGFSNRMLDTASAMA 330 +S ++++ WYDNE+G+S R++D +A Sbjct: 309 AGIQLSPKFVKLVAWYDNEYGYSTRVVDLVEHVA 342 >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics, oxidoreductase; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* Length = 354 Score = 415 bits (1068), Expect = e-117 Identities = 149/338 (44%), Positives = 214/338 (63%), Gaps = 9/338 (2%) Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAIND-LNSIETMAHLLRYDSVHGRFPGE 59 + INGFGRIGR +LRA +E R+D+ +VAIND +E MA+LL+YDSVHG F G Sbjct: 16 FQGTLGINGFGRIGRLVLRACME--RNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGT 73 Query: 60 VKIIGDTIDVGLGPIQVTSIRDPQDLPWG--DVDVAMECTGFFVTQEKASLHLSNGSQRV 117 V++ G + + ++V +DP ++PWG + E TG F T+EKASLHL G+++V Sbjct: 74 VEVSGKDLCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKV 133 Query: 118 LVSAPCKGVKKTIVYGVNHQSLNKED-KVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTT 176 ++SAP K V GVN+ + V+SNASCTTNCL P+ +++ FGI +G MTT Sbjct: 134 IISAPPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTT 193 Query: 177 VHSYTGDQHVLDAGHS---DLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRV 233 VHS T +Q +D D R A +++P STGAAKAV V+P L GKL G +IRV Sbjct: 194 VHSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRV 253 Query: 234 PTPNVSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIF 293 PTP+VS+VDL C ++ +I+EI +K + G +K I+GY + +VS DF YSSIF Sbjct: 254 PTPDVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSIF 313 Query: 294 AADQTKVVSQNLLRVLVWYDNEWGFSNRMLDTASAMAN 331 + ++ + ++++ WYDNE G+SNR++D A +A+ Sbjct: 314 DKNACIALNDSFVKLISWYDNESGYSNRLVDLAVYVAS 351 >2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A Length = 380 Score = 408 bits (1049), Expect = e-114 Identities = 164/334 (49%), Positives = 219/334 (65%), Gaps = 4/334 (1%) Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEV 60 M +VAINGFGRIGR LR + D+ +VAIN+ + T AHLL YDSV GRF ++ Sbjct: 1 MTIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADI 60 Query: 61 KIIGDTIDVGLGPIQVTSIRDPQDLPWG--DVDVAMECTGFFVTQEKASLHLSNGSQRVL 118 ++I V +++ R+P +LPW D+D+ +E TG FVT E AS H+ G+++VL Sbjct: 61 SYDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVL 120 Query: 119 VSAPCKG-VKKTIVYGVNHQSLNKED-KVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTT 176 ++AP K T V GVN ED V+SNASCTTNCL PV VL FGI KG MTT Sbjct: 121 ITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTMTT 180 Query: 177 VHSYTGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTP 236 HSYT DQ +LDA H DL R+RAAA+++VPT+TGAAKAV LV+P LKGKL+G ++RVPTP Sbjct: 181 THSYTLDQRILDASHRDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRVPTP 240 Query: 237 NVSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAAD 296 NVS+VDL + +++N ++ ++ +K I+ Y LPLVS DF T SSI + Sbjct: 241 NVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIVDSS 300 Query: 297 QTKVVSQNLLRVLVWYDNEWGFSNRMLDTASAMA 330 T V+ +L++V+ WYDNEWG+S R++D A A Sbjct: 301 LTLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAA 334 >1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 Length = 332 Score = 407 bits (1048), Expect = e-114 Identities = 165/331 (49%), Positives = 226/331 (68%), Gaps = 2/331 (0%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKII 63 +VAINGFGRIGR + R E + D+ +VAINDL +T+AHLL+YDSVH +FPG+V+ Sbjct: 2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYT 61 Query: 64 GDTIDVGLGPIQVTSIRDPQDLPWGD--VDVAMECTGFFVTQEKASLHLSNGSQRVLVSA 121 +++ V I+V + DP LPW D VD +E TG F +EKA LHL G+++V+++A Sbjct: 62 ENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITA 121 Query: 122 PCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSYT 181 P KG T+V G N L E ++S ASCTTN + P+V VL + FGI G +TTVHSYT Sbjct: 122 PAKGEDITVVIGCNEDQLKPEHTIISCASCTTNSIAPIVKVLHEKFGIVSGMLTTVHSYT 181 Query: 182 GDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPNVSMV 241 DQ VLD H DL R+RAAA++++PT+TGAAKAV LV+P +KGKLDG +IRVPTP+ S+ Sbjct: 182 NDQRVLDLPHKDLRRARAAAVNIIPTTTGAAKAVALVVPEVKGKLDGMAIRVPTPDGSIT 241 Query: 242 DLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQTKVV 301 DL + ++ ++E+NA MK EG LK I+GY P+VS D T++S IF A T V+ Sbjct: 242 DLTVLVEKETTVEEVNAVMKEATEGRLKGIIGYNDEPIVSSDIIGTTFSGIFDATITNVI 301 Query: 302 SQNLLRVLVWYDNEWGFSNRMLDTASAMANL 332 L++V WYDNE+G+SNR++DT + + Sbjct: 302 GGKLVKVASWYDNEYGYSNRVVDTLELLLKM 332 >1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 2pkq_O* Length = 337 Score = 402 bits (1034), Expect = e-113 Identities = 170/331 (51%), Positives = 224/331 (67%), Gaps = 3/331 (0%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKII 63 KVAINGFGRIGR LR + + +V IND ++ +HLL+YDS+ G F +VK Sbjct: 3 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTA 62 Query: 64 GDTIDVGLG-PIQVTSIRDPQDLPWGD--VDVAMECTGFFVTQEKASLHLSNGSQRVLVS 120 GD+ G I+V S R+P +LPWGD +D+ +E TG FV ++ A HL G+++VL++ Sbjct: 63 GDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLIT 122 Query: 121 APCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSY 180 AP KG T V GVN + D ++SNASCTTNCL P V VLD+ FGI KG MTT HSY Sbjct: 123 APGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSY 182 Query: 181 TGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPNVSM 240 TGDQ +LDA H DL R+RAA +++VPTSTGAAKAV LVLPNLKGKL+G ++RVPTPNVS+ Sbjct: 183 TGDQRLLDASHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSV 242 Query: 241 VDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQTKV 300 VDL S+ +E+NA + A+ +LK IL PLVS+DF T SS + T V Sbjct: 243 VDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMV 302 Query: 301 VSQNLLRVLVWYDNEWGFSNRMLDTASAMAN 331 + ++++V+ WYDNEWG+S R++D A +AN Sbjct: 303 MGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 333 >2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus} Length = 342 Score = 401 bits (1033), Expect = e-113 Identities = 163/341 (47%), Positives = 220/341 (64%), Gaps = 14/341 (4%) Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEV 60 M KV INGFGRIGR RA+ R+++ IVAINDL + +AHLL+YDSVHG F G V Sbjct: 1 MAIKVGINGFGRIGRSFFRASWG--REEIEIVAINDLTDAKHLAHLLKYDSVHGIFKGSV 58 Query: 61 KIIGDTIDVGLGPIQVTSIRDPQDLPWGD--VDVAMECTGFFVTQEKASLHLSNGSQRVL 118 + D+I V I+V + +DP +PWGD VDV +E TG F +E AS HL G+++V+ Sbjct: 59 EAKDDSIVVDGKEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVI 118 Query: 119 VSAPCKGVKKTIVYGVNHQSLNKED-KVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTV 177 ++AP K T+V GVN + N ++ ++SNASCTTNCL P V VL++ FG+EKGYM TV Sbjct: 119 ITAPAKNPDITVVLGVNEEKYNPKEHNIISNASCTTNCLAPCVKVLNEAFGVEKGYMVTV 178 Query: 178 HSYTGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPN 237 H+YT DQ +LD H D R+RAAAI++VPT+TGAAKA+ V+P LKGKLDG++ RVP P+ Sbjct: 179 HAYTNDQRLLDLPHKDFRRARAAAINIVPTTTGAAKAIGEVIPELKGKLDGTARRVPVPD 238 Query: 238 VSMVDLKCVTSRDVNIDEINATMKYFA--------EGDLKNILGYVTLPLVSVDFNHTSY 289 S++DL V ++ + E A + LK IL Y P+VS D + Sbjct: 239 GSLIDLTVVVNKAPSSVEEVNEKFREAAQKYRESGKVYLKEILQYCEDPIVSTDIVGNPH 298 Query: 290 SSIFAADQTKVVSQNLLRVLVWYDNEWGFSNRMLDTASAMA 330 S+IF A T+V+ NL+ + WYDNEWG+S R+ D +A Sbjct: 299 SAIFDAPLTQVID-NLVHIAAWYDNEWGYSCRLRDLVIYLA 338 >2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, protein structure initiative, GAPDH, oxidoreductase; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O* Length = 345 Score = 400 bits (1028), Expect = e-112 Identities = 151/336 (44%), Positives = 203/336 (60%), Gaps = 8/336 (2%) Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAIND-LNSIETMAHLLRYDSVHGRFPGE 59 K+ INGFGRIGR + RAA R D+ +VAIND + + +LL+YDSVHG+FP E Sbjct: 10 AATKLGINGFGRIGRLVFRAAFG--RKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCE 67 Query: 60 VKIIGDTIDVGLGPIQVTSIRDPQDLPWGD--VDVAMECTGFFVTQEKASLHLSNGSQRV 117 V + +G + V + +DP +PWG VDV E TG F+T+E AS HL G+++V Sbjct: 68 VTHADGFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKV 127 Query: 118 LVSAPCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTV 177 ++SAP K V G+NH + + +VSNASCTTNCL P+ V++ FGI +G MTTV Sbjct: 128 IMSAPPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTV 187 Query: 178 HSYTGDQHVLDAGH---SDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVP 234 H+ T +Q V+D D R A +++P STGAAKAV VLP L GKL G + RVP Sbjct: 188 HASTANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAKAVGKVLPELNGKLTGVAFRVP 247 Query: 235 TPNVSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFA 294 VS+VDL C + +E+ +K AEG LK ILGY +VS DF H + SSIF Sbjct: 248 IGTVSVVDLVCRLQKPAKYEEVALEIKKAAEGPLKGILGYTEDEVVSQDFVHDNRSSIFD 307 Query: 295 ADQTKVVSQNLLRVLVWYDNEWGFSNRMLDTASAMA 330 ++ N +++ WYDNEWG+SNR+LD A + Sbjct: 308 MKAGLALNDNFFKLVSWYDNEWGYSNRVLDLAVHIT 343 >3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31} Length = 356 Score = 396 bits (1018), Expect = e-111 Identities = 151/336 (44%), Positives = 205/336 (61%), Gaps = 12/336 (3%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKII 63 K+AINGFGRIGR + + A E + IVAINDL +T+AHLL+YDS G + +V+ Sbjct: 23 KLAINGFGRIGRNVFKIAFER---GIDIVAINDLTDPKTLAHLLKYDSTFGVYNKKVESR 79 Query: 64 GDTIDVGLGPIQVTSIRDPQDLPWGDVDVAMECTGFFVTQEKA-------SLHLSNGSQR 116 I V I++ + RDP++LPW + + + V G+++ Sbjct: 80 DGAIVVDGREIKIIAERDPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAGAKK 139 Query: 117 VLVSAPCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTT 176 V+++ P K KTIV GVN +N + K VSNASCTTNCL P+ VL + FGIE+G MTT Sbjct: 140 VILTVPAKDEIKTIVLGVNDHDINSDLKAVSNASCTTNCLAPLAKVLHESFGIEQGLMTT 199 Query: 177 VHSYTGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTP 236 VH+YT DQ +LD HSDL R+RAAA+S++PTSTGAAKAV LVLP LKGKL+G+S+RVP P Sbjct: 200 VHAYTNDQRILDLPHSDLRRARAAALSIIPTSTGAAKAVGLVLPELKGKLNGTSMRVPVP 259 Query: 237 NVSMVDLKCVTSRDVNIDEINATMKYFA--EGDLKNILGYVTLPLVSVDFNHTSYSSIFA 294 S+VDL + E ++ A +LK ILGY P+VS D S+SSI Sbjct: 260 TGSIVDLTVQLKKKDVTKEEINSVLRKASETPELKGILGYTEDPIVSSDIKGNSHSSIVD 319 Query: 295 ADQTKVVSQNLLRVLVWYDNEWGFSNRMLDTASAMA 330 +T V+ ++L WYDNE+G+S R++D A + Sbjct: 320 GLETMVLENGFAKILSWYDNEFGYSTRVVDLAQKLV 355 >1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* Length = 330 Score = 389 bits (1001), Expect = e-109 Identities = 148/330 (44%), Positives = 206/330 (62%), Gaps = 6/330 (1%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKII 63 KV INGFGRIGR + RAA + R D+ IVAINDL + MA++L+YDS HGRF G V++ Sbjct: 3 KVGINGFGRIGRIVFRAAQK--RSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVK 60 Query: 64 GDTIDVGLGPIQVTSIRDPQDLPWG--DVDVAMECTGFFVTQEKASLHLSNGSQRVLVSA 121 + V I+VT+ RDP +L W VDV E TG F+T E A H++ G+++V+++ Sbjct: 61 DGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTG 120 Query: 122 PCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSYT 181 P K V G N +VSNASCTTNCL P+ V++ FGI +G MTTVH+ T Sbjct: 121 PSKDNTPMFVKGANFD-KYAGQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATT 179 Query: 182 GDQHVLDA-GHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPNVSM 240 Q +D H D R A+ +++P+STGAAKAV VLP L GKL G + RVPTPNVS+ Sbjct: 180 ATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSV 239 Query: 241 VDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQTKV 300 VDL + ++I A +K AEG++K +LGY +VS DFN +S+F A Sbjct: 240 VDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIA 299 Query: 301 VSQNLLRVLVWYDNEWGFSNRMLDTASAMA 330 ++ N ++++ WYDNE G+SN++LD + ++ Sbjct: 300 LNDNFVKLVSWYDNETGYSNKVLDLIAHIS 329 >2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A* Length = 331 Score = 372 bits (956), Expect = e-104 Identities = 156/331 (47%), Positives = 215/331 (64%), Gaps = 7/331 (2%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKII 63 KV INGFGRIGR + R V + INDL +T+AHLL+YDS++ RFPGEV Sbjct: 2 KVGINGFGRIGRQVFRILHSR---GVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYD 58 Query: 64 GDTIDVGLGPIQVTSIRDPQDLPWG--DVDVAMECTGFFVTQEKASLHLSNGSQRVLVSA 121 + V I+ T+++DP+++PW V V +E TG F +KA HL G+++V+++A Sbjct: 59 DQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITA 118 Query: 122 PCKGVKKTIVYGVNHQSLNKED-KVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSY 180 P KG TIV GVNH++ + ++SNASCTTN L PV+ VL++ FG+EK MTTVHSY Sbjct: 119 PAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSY 178 Query: 181 TGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPNVSM 240 T DQ +LD H DL R+RAAAI+++PT+TGAAKA LVLP+LKG+ DG ++RVPT S+ Sbjct: 179 TNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSI 238 Query: 241 VDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQTKV 300 D+ + R+V +E+NA +K AEG LK IL Y +V D +SSI A TK Sbjct: 239 SDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKA 298 Query: 301 VSQNLLRVLVWYDNEWGFSNRMLDTASAMAN 331 + N+++V WYDNEWG++NR+ D + Sbjct: 299 LG-NMVKVFAWYDNEWGYANRVADLVELVLR 328 >3h9e_A Glyceraldehyde-3-phosphate dehydrogenase, testis- specific; oxidoreductase, structural genomics, structural genomics consortium, SGC, cytoplasm; HET: NAD; 1.72A {Homo sapiens} PDB: 2vyn_D* 2vyv_D* Length = 346 Score = 357 bits (917), Expect = 2e-99 Identities = 134/331 (40%), Positives = 194/331 (58%), Gaps = 7/331 (2%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAIND-LNSIETMAHLLRYDSVHGRFPGEVKI 62 V INGFGRIGR +LRA +E V++VA+ND E M ++ +YDS HGR+ G V+ Sbjct: 9 TVGINGFGRIGRLVLRACMEK---GVKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGSVEF 65 Query: 63 IGDTIDVGLGPIQVTSIRDPQDLPWG--DVDVAMECTGFFVTQEKASLHLSNGSQRVLVS 120 + V I V ++P+ +PW +E TG +++ + AS H+S G+QRV++S Sbjct: 66 RNGQLVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVIS 125 Query: 121 APCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSY 180 AP ++ + +VSNASCTTNCL P+ V+ + FGI +G MTTVHSY Sbjct: 126 APSPDAPMFVMGVNENDYNPGSMNIVSNASCTTNCLAPLAKVIHERFGIVEGLMTTVHSY 185 Query: 181 TGDQHVLDAGHSDLYR-SRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPNVS 239 T Q +D +R R A +++P STGAAKAV V+P LKGKL G + RVPTP+VS Sbjct: 186 TATQKTVDGPSRKAWRDGRGAHQNIIPASTGAAKAVTKVIPELKGKLTGMAFRVPTPDVS 245 Query: 240 MVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQTK 299 +VDL C ++ I +K A+G + IL Y +VS DF ++SSIF A Sbjct: 246 VVDLTCRLAQPAPYSAIKEAVKAAAKGPMAGILAYTEDEVVSTDFLGDTHSSIFDAKAGI 305 Query: 300 VVSQNLLRVLVWYDNEWGFSNRMLDTASAMA 330 ++ N ++++ WYDNE+G+S+R++D M Sbjct: 306 ALNDNFVKLISWYDNEYGYSHRVVDLLRYMF 336 >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} Length = 343 Score = 265 bits (678), Expect = 1e-71 Identities = 51/339 (15%), Positives = 107/339 (31%), Gaps = 21/339 (6%) Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEV 60 M KV ING+G IG+ + A +DD+ ++ + +V + V Sbjct: 1 MPAKVLINGYGSIGKRVADAVSM--QDDMEVIGVTKTK-----PDFEARLAVEKGYKLFV 53 Query: 61 KIIGDTIDVGLGPIQVTSIRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVS 120 I + + D+ D D+ ++ + ++ + ++ Sbjct: 54 AIPDNERVKLFEDAGIPVEGTILDIIE-DADIVVDGAPKKIGKQNLENIYKPHKVKAILQ 112 Query: 121 APCKGVKKTIVYGVNH-QSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHS 179 K + + V SC T L +++ ++ + I+K + V Sbjct: 113 GGEKAKDVEDNFNALWSYNRCYGKDYVRVVSCNTTGLCRILYAINSIADIKKARIVLVRR 172 Query: 180 YTGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPNVS 239 A + V + V V+P +GK+ S++ VPT + Sbjct: 173 AADPNDDKTG------PVNAITPNPVTVPSHHGPDVVSVVPEFEGKILTSAVIVPTTLMH 226 Query: 240 MVDLKCVTSRDVNIDEINATM----KYFAEGDLKNILGYVTLPLVSVDFNH--TSYSSIF 293 M L DV+ D+I + + + D + + Sbjct: 227 MHTLMVEVDGDVSRDDILEAIKKTPRIITVRAEDGFSSTAKIIEYGRDLGRLRYDINELV 286 Query: 294 AADQTKVVSQNLLRVLVWYDNEWGFSNRMLDTASAMANL 332 +++ V +N + ++ E +D AM + Sbjct: 287 VWEESINVLENEIFLMQAVHQESIVIPENIDCIRAMLQM 325 >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase); archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrogenase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 Length = 340 Score = 246 bits (629), Expect = 6e-66 Identities = 47/341 (13%), Positives = 109/341 (31%), Gaps = 32/341 (9%) Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN-SIETMAHLLRYDSVHGRFPGE 59 MV VA+NG+G IG+ + A ++ + D+++V + + + E R ++ Sbjct: 1 MV-NVAVNGYGTIGKRVADAIIK--QPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSI 57 Query: 60 VKIIGDTIDVGLGPIQVTSIRDPQDLPWG--DVDVAMECTGFFVTQEKASLHLSNGSQRV 117 K I V + D+ ++ T V + ++L + Sbjct: 58 KKFEESGIPV------------AGTVEDLIKTSDIVVDTTPNGVGAQYKPIYLQLQRNAI 105 Query: 118 LVSAPCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTV 177 V + + + K + SC T L+ + ++K+ +EK T V Sbjct: 106 FQGGEKAEVADISFSALCNYNEALGKKYIRVVSCNTTALLRTICTVNKVSKVEKVRATIV 165 Query: 178 HSYTGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPN 237 + ++ + ++ P + + A ++ + ++ PT Sbjct: 166 RRAADQK--------EVKKGPINSLVPDPATVPSHHAKDVNSVIRNLDIATMAVIAPTTL 217 Query: 238 VSMVDLKCVTSRDVNIDEINATMKYFAE----GDLKNILGYVTLPLVSVD--FNHTSYSS 291 + M + V +I + ++ + L V+ D + Sbjct: 218 MHMHFINITLKDKVEKKDILSVLENTPRIVLISSKYDAEATAELVEVARDLKRDRNDIPE 277 Query: 292 IFAADQTKVVSQNLLRVLVWYDNEWGFSNRMLDTASAMANL 332 + + V + + ++ E +D A L Sbjct: 278 VMIFSDSIYVKDDEVMLMYAVHQESIVVPENIDAIRASMKL 318 >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.00A {Pyrococcus horikoshii OT3} SCOP: c.2.1.3 d.81.1.1 Length = 334 Score = 243 bits (620), Expect = 6e-65 Identities = 49/341 (14%), Positives = 99/341 (29%), Gaps = 34/341 (9%) Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEV 60 M KV +NG+G IG+ + A + +DD+ ++ I + A+ + + E Sbjct: 1 MKVKVGVNGYGTIGKRVAYAVTK--QDDMELIGITKT-KPDFEAYRAKELGIPVYAASEE 57 Query: 61 KIIGDTIDVGLGPIQVTSIRDPQDLPWGD--VDVAMECTGFFVTQEKASLHLSNGSQRVL 118 I + L VD+ ++ T + + L+ G + + Sbjct: 58 FIPR---------FEKEGFEVAGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIF 108 Query: 119 VSAPCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVH 178 V + + V SC T LV + + + M Sbjct: 109 QGGEKADVAEVSFVAQANYEAALGKNYVRVVSCNTTGLVRTLSAIREYADYVYAVMIRRA 168 Query: 179 SYTGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPNV 238 + D R ++ PT + V + ++ + VPT + Sbjct: 169 ADPNDTK------------RGPINAIKPTVEVPSHHGPDVQTVIPINIETMAFVVPTTLM 216 Query: 239 SMVDLKCVTSRDVNIDEINATMKYFAEGDL----KNILGYVTLPLVSVDFNHT---SYSS 291 + + + + D++ + L K + + D + Y Sbjct: 217 HVHSVMVELKKPLTKDDVIDIFENTTRVLLFEKEKGFDSTAQIIEFARDLHREWNNLYEI 276 Query: 292 IFAADQTKVVSQNLLRVLVWYDNEWGFSNRMLDTASAMANL 332 + + N L + E +D AM L Sbjct: 277 AVWKESINIKG-NRLFYIQAVHQESDVIPENIDAIRAMFEL 316 >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 Length = 337 Score = 225 bits (575), Expect = 9e-60 Identities = 50/328 (15%), Positives = 103/328 (31%), Gaps = 28/328 (8%) Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN-SIETMAHLLRYDSVHGRFPGE 59 M VAING+G +G+ + A + +DD++++ ++ E L + ++ P Sbjct: 1 MK-AVAINGYGTVGKRVADAIAQ--QDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPER 57 Query: 60 VKIIGDTIDVGLGPIQVTSIRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLV 119 VK+ I+V D + D+ ++CT + + ++ G + + Sbjct: 58 VKLFEK------AGIEVAGTVDDM---LDEADIVIDCTPEGIGAKNLKMYKEKGIKAIFQ 108 Query: 120 SAPCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHS 179 +++ + SC T L + L FGI+K V Sbjct: 109 GGEKHEDIGLSFNSLSNYEESYGKDYTRVVSCNTTGLCRTLKPLHDSFGIKKVRAVIVRR 168 Query: 180 YTGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAV-ELVLPNLKGKLDGSSIRVPTPNV 238 S+ +++P V L +D ++ VPT + Sbjct: 169 GADPAQ----------VSKGPINAIIPNPPKLPSHHGPDVKTVLDINIDTMAVIVPTTLM 218 Query: 239 SMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQT 298 ++ +D+I + + IL L S + + Sbjct: 219 HQHNVMVEVEETPTVDDIIDVFE----DTPRVILISAEDGLTSTAEIMEYAKELGRSRND 274 Query: 299 KVVSQNLLRVLVWYDNEWGFSNRMLDTA 326 + DNE + + + Sbjct: 275 LFEIPVWRESITVVDNEIYYMQAVHQES 302 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 67.3 bits (164), Expect = 5e-12 Identities = 74/372 (19%), Positives = 111/372 (29%), Gaps = 160/372 (43%) Query: 17 ILRAAVESRRDDVRIVAI-----NDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGL 71 + RA + ++VAI N + E + L Y + H ++GD I Sbjct: 145 LFRAV---GEGNAQLVAIFGGQGNTDDYFEELRDL--YQTYHV-------LVGDLIKF-S 191 Query: 72 GPIQVTSIRDPQD-----------LPWGDVDVAMECTGFFVTQEKASLHLSNGSQR---- 116 IR D L W L N S Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEW----------------------LENPSNTPDKD 229 Query: 117 VLVSAPCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVH--VLDKMFGIEKGYM 174 L+S P +S C ++ + H V K+ G G + Sbjct: 230 YLLSIP-----------------------IS---CPLIGVIQLAHYVVTAKLLGFTPGEL 263 Query: 175 ------TTVHSYTGDQHVLDAGHSDLYRSRAAAISMVPTS-----TGAAKAVELVL---- 219 T HS Q ++ A AI+ S KA+ ++ Sbjct: 264 RSYLKGATGHS----QGLV----------TAVAIAET-DSWESFFVSVRKAITVLFFIGV 308 Query: 220 ------PNLKGKLDGS----SIR----VPTPNVSMVDLKCVTSRDVNIDEINATMKYFAE 265 PN L S S+ VP+P +S+ +L +++ D +N T + Sbjct: 309 RCYEAYPNTS--LPPSILEDSLENNEGVPSPMLSISNL----TQEQVQDYVNKTNSHLPA 362 Query: 266 GD-----LKNILGY----VTLPLVS-VDFNHTSYSSIFAA---DQTKV-VSQNLLRVLVW 311 G L N G V+ P S N T A DQ+++ S+ R L Sbjct: 363 GKQVEISLVN--GAKNLVVSGPPQSLYGLNLT-LRKAKAPSGLDQSRIPFSE---RKLK- 415 Query: 312 YDNEWGFSNRML 323 FSNR L Sbjct: 416 ------FSNRFL 421 Score = 46.9 bits (111), Expect = 7e-06 Identities = 49/299 (16%), Positives = 90/299 (30%), Gaps = 118/299 (39%) Query: 61 KIIGDTIDVGLG-PIQVTSIRDPQDLPWGDVDVAMECTGFFVTQEKA-SLHLSNGSQRVL 118 I+ D+++ G P + SI + L V + T + K + L NG++ ++ Sbjct: 322 SILEDSLENNEGVPSPMLSISN---LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV 378 Query: 119 VSAPCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVH 178 VS P + +YG+N L K S G+ Sbjct: 379 VSGPPQS-----LYGLNLT-LRK----AKAPS-----------------GL--------- 402 Query: 179 SYTGDQHVLDAGHSDLYRSRAAAISM--VPTSTGA-------AKAVELVLPNLKG---KL 226 DQ + + R S +P + + A +L+ +L Sbjct: 403 ----DQSRI------PFSERKLKFSNRFLPVA--SPFHSHLLVPASDLINKDLVKNNVSF 450 Query: 227 DGSSIRVP-------------TPNV--SMVDLKCVTSRDVN------------IDEINAT 259 + I++P + ++ +VD C+ V +D Sbjct: 451 NAKDIQIPVYDTFDGSDLRVLSGSISERIVD--CIIRLPVKWETTTQFKATHILD----- 503 Query: 260 MKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQTKVVSQNLLRVLVWYDNEWGF 318 F G + G L + + T I A + N D+++GF Sbjct: 504 ---FGPGGASGL-G----VLTHRNKDGTGVRVIVAGT----LDINP-------DDDYGF 543 Score = 40.7 bits (95), Expect = 5e-04 Identities = 44/261 (16%), Positives = 66/261 (25%), Gaps = 122/261 (46%) Query: 8 NGFGR------IGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVH-----GRF 56 N G I + + V+ +N NS HL V G Sbjct: 330 NNEGVPSPMLSI-SNLTQEQVQDY--------VNKTNS-----HLPAGKQVEISLVNGA- 374 Query: 57 PGEVKIIGDTIDVGLGPIQ-----VTSIRD---PQDL-----PWGDVDVAMECTGFFVTQ 103 + V GP Q ++R P L P F ++ Sbjct: 375 --------KNLVVS-GPPQSLYGLNLTLRKAKAPSGLDQSRIP-------------F-SE 411 Query: 104 EKA--------------SLHLSNGSQRVLVSAPCKGVK------KTIVY----GVNHQSL 139 K S L S + V + VY G + + L Sbjct: 412 RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL 471 Query: 140 --NKEDKVVS-------NASCTTNCLVPVVHVLDKMFG------IEKGYMT--------- 175 + +++V TT H+LD FG + G +T Sbjct: 472 SGSISERIVDCIIRLPVKWETTTQF--KATHILD--FGPGGASGL--GVLTHRNKDGTGV 525 Query: 176 -TVHSYTGDQHVLDAGHSDLY 195 + + G LD D Y Sbjct: 526 RVIVA--GT---LDINPDDDY 541 >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis W83} Length = 304 Score = 39.9 bits (93), Expect = 7e-04 Identities = 51/268 (19%), Positives = 85/268 (31%), Gaps = 67/268 (25%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKII 63 + AI G+G IGR L+A D I I N E L + V Sbjct: 11 RAAIVGYGNIGRYALQAL--REAPDFEIAGIVRRNPAEVPFELQPFRVVS---------- 58 Query: 64 GDTIDVGLGPIQVTSIRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPC 123 D + L VDVA+ C+ + A L G Sbjct: 59 -----------------DIEQLE--SVDVALVCSPSREVERTALEILKKG---------- 89 Query: 124 KGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSYTGD 183 T H + + + +A+ + + G + G + V + Sbjct: 90 ---ICTADSFDIHDGILALRRSLGDAAGKSGAAAVI------ASGWDPGSDSVVRTL--M 138 Query: 184 QHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPN-VSMVD 242 Q ++ G + Y + +SM T A KA++ G S+ +P V Sbjct: 139 QAIVPKGIT--YTNFGPGMSMGHTV--AVKAID-------GVKAALSMTIPLGTGVHRRM 187 Query: 243 LKCVTSRDVNIDEINATMK---YFAEGD 267 + N++E++A +K YF + Sbjct: 188 VYVELLPGHNLEEVSAAIKADEYFVHDE 215 >2o4u_X Dimeric dihydrodiol dehydrogenase; NADP-binding rossmann-fold domain, predominantly anti- parallel beta sheet, oxidoreductase; 2.00A {Macaca fascicularis} PDB: 2o48_X 2poq_X* Length = 334 Score = 36.0 bits (81), Expect = 0.012 Identities = 7/38 (18%), Positives = 13/38 (34%) Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38 M + I G I R + ++VA+ + Sbjct: 1 MALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARD 38 >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium LT2} Length = 357 Score = 35.6 bits (80), Expect = 0.016 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%) Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNS 39 M K I G G IG LR + V +VA+ D+ + Sbjct: 22 MTLKAGIVGIGMIGSDHLRRLANT-VSGVEVVAVCDIVA 59 >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A Length = 349 Score = 35.4 bits (80), Expect = 0.021 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVH 53 M K+ GFG+ V R+ + + I DL+ E A + V+ Sbjct: 1 MTVKMGFIGFGKSANRYHLPYV-MIRETLEVKTIFDLHVNEKAAAPFKEKGVN 52 >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* Length = 336 Score = 34.9 bits (79), Expect = 0.022 Identities = 19/108 (17%), Positives = 51/108 (47%), Gaps = 4/108 (3%) Query: 79 IRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCKGVKKT--IVYGVNH 136 +++ ++ W V +A+ G ++ + A + G + ++ + +V VN Sbjct: 55 VQNVEEFDWSQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNP 114 Query: 137 QSLN--KEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSYTG 182 +++ + +++N +C+T ++ + + GIE+ +TT S +G Sbjct: 115 EAIAEFRNRNIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSG 162 >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum atcc 13032} Length = 344 Score = 34.8 bits (78), Expect = 0.029 Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 2/38 (5%) Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38 + ++A+ G GRIG + D+ +V I D Sbjct: 3 LTLRIALFGAGRIGHVHAANI--AANPDLELVVIADPF 38 >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* Length = 444 Score = 34.2 bits (77), Expect = 0.039 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNS 39 ++A G G+ + +RRDDV IVA D + Sbjct: 22 RIAFIAVGLRGQTHVENM--ARRDDVEIVAFADPDP 55 >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase family, NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} Length = 346 Score = 34.0 bits (76), Expect = 0.047 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNS 39 + AI G GR+G R V ++ V++VA L+S Sbjct: 10 RAAIIGLGRLGERHARHLV-NKIQGVKLVAACALDS 44 >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* Length = 344 Score = 34.0 bits (77), Expect = 0.050 Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38 ++ + G G IG+ + ++ IVA+ D+N Sbjct: 4 RIGVIGTGAIGKEHINRIT-NKLSGAEIVAVTDVN 37 >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genomics, protein structure initiative, PSI; HET: NAD; 1.95A {Listeria innocua} Length = 359 Score = 33.7 bits (75), Expect = 0.066 Identities = 8/36 (22%), Positives = 19/36 (52%), Gaps = 2/36 (5%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNS 39 ++ I G+G +G + A S D++ + + D+ + Sbjct: 7 QLVIVGYGGMGSYHVTLA--SAADNLEVHGVFDILA 40 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 33.1 bits (74), Expect = 0.083 Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 2/29 (6%) Query: 104 EKASLHLSNGSQRVLV--SAPCKGVKKTI 130 EK +L S ++ SAP +K T+ Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATM 46 Score = 28.4 bits (62), Expect = 2.3 Identities = 5/30 (16%), Positives = 16/30 (53%), Gaps = 9/30 (30%) Query: 253 IDEINATMKYFAEGDLKNILGYVTLPLVSV 282 + ++ A++K +A+ D + P +++ Sbjct: 22 LKKLQASLKLYAD-D--------SAPALAI 42 >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase family, NAD-binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum ms-1} Length = 315 Score = 32.9 bits (73), Expect = 0.098 Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 2/35 (5%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38 ++A+ G GR G+ +R + +V + N Sbjct: 12 RLALIGAGRWGKNYIRTI--AGLPGAALVRLASSN 44 >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} Length = 344 Score = 33.0 bits (74), Expect = 0.100 Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 2/38 (5%) Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38 M ++ + G GRIG DD + AI+D+ Sbjct: 1 MSLRIGVIGLGRIGTIHAENL--KMIDDAILYAISDVR 36 >1zh8_A Oxidoreductase; TM0312, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: MSE NAP; 2.50A {Thermotoga maritima MSB8} SCOP: c.2.1.3 d.81.1.5 Length = 340 Score = 32.9 bits (73), Expect = 0.11 Identities = 7/35 (20%), Positives = 14/35 (40%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38 ++ I G G R + A+++ I A+ Sbjct: 20 RLGIVGCGIAARELHLPALKNLSHLFEITAVTSRT 54 >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} Length = 387 Score = 32.4 bits (73), Expect = 0.14 Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38 + I G G G ++ A+ D +IVA D N Sbjct: 4 RFGICGLGFAGSVLMAPAM-RHHPDAQIVAACDPN 37 >2ho3_A Oxidoreductase, GFO/IDH/MOCA family; reductive methylation, structural genomics, PSI 2, protein structure initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A Length = 325 Score = 32.1 bits (71), Expect = 0.18 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 2/35 (5%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38 K+ + G G I + AA + ++VAI Sbjct: 3 KLGVIGTGAISHHFIEAA--HTSGEYQLVAIYSRK 35 >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} Length = 236 Score = 31.9 bits (72), Expect = 0.18 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 3/35 (8%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38 V + G+G IG+ + R+ I AI D+ Sbjct: 2 LVGLIGYGAIGKFLAEWL---ERNGFEIAAILDVR 33 >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A Length = 358 Score = 31.9 bits (70), Expect = 0.20 Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 1/36 (2%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNS 39 KV I G+G G + D+ +I I + Sbjct: 7 KVGILGYGLSGSVFHGPLL-DVLDEYQISKIMTSRT 41 >3db2_A Putative NADPH-dependent oxidoreductase; ZP_01370612.1, structural genomics, joint center for structural genomics, JCSG; 1.70A {Desulfitobacterium hafniense dcb-2} Length = 354 Score = 31.8 bits (71), Expect = 0.24 Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 2/35 (5%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38 VA G GR + A ++ + +++V Sbjct: 7 GVAAIGLGRWAYVMADAY--TKSEKLKLVTCYSRT 39 >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A Length = 362 Score = 31.8 bits (70), Expect = 0.24 Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 2/35 (5%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38 ++ + G I R + RA + I + + Sbjct: 8 RIGVMGCADIARKVSRAI--HLAPNATISGVASRS 40 >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} Length = 364 Score = 31.3 bits (69), Expect = 0.27 Identities = 4/35 (11%), Positives = 14/35 (40%), Gaps = 1/35 (2%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38 +A+ G+G +G+ + + + + + Sbjct: 9 NIALIGYGFVGKTFHAPLI-RSVPGLNLAFVASRD 42 >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} Length = 330 Score = 31.4 bits (69), Expect = 0.28 Identities = 5/35 (14%), Positives = 9/35 (25%), Gaps = 2/35 (5%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38 + I +I + ES + I Sbjct: 7 RYGIMSTAQIVPRFVAGLRES--AQAEVRGIASRR 39 >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center for structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} Length = 352 Score = 31.5 bits (70), Expect = 0.31 Identities = 4/35 (11%), Positives = 13/35 (37%), Gaps = 1/35 (2%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38 KV + G+G + + + + ++ + Sbjct: 9 KVGLLGYGYASKTFHAPLI-MGTPGLELAGVSSSD 42 >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative; 2.00A {Streptococcus agalactiae serogroup V} Length = 329 Score = 31.4 bits (69), Expect = 0.32 Identities = 2/35 (5%), Positives = 11/35 (31%), Gaps = 2/35 (5%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38 + + ++ + + +VA++ Sbjct: 7 RYGVVSTAKVAPRFIEGV--RLAGNGEVVAVSSRT 39 >1tlt_A Putative oxidoreductase (virulence factor MVIM homolog); structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 Length = 319 Score = 31.0 bits (68), Expect = 0.42 Identities = 4/35 (11%), Positives = 11/35 (31%), Gaps = 1/35 (2%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38 ++ + G G I + + + D + Sbjct: 7 RIGVVGLGGIAQKAWLPVL-AAASDWTLQGAWSPT 40 >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* Length = 320 Score = 30.7 bits (69), Expect = 0.46 Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 2/31 (6%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAI 34 +VAI G+G +GR + + +++ D+ +V I Sbjct: 5 RVAIVGYGNLGRSVEKLI--AKQPDMDLVGI 33 >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* Length = 253 Score = 30.5 bits (68), Expect = 0.48 Identities = 10/132 (7%), Positives = 30/132 (22%), Gaps = 25/132 (18%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKII 63 V I G G IG+ ++ + + D R ++ + Sbjct: 14 TVLIIGMGNIGKKLVELG------NFEKIYAYD------------------RISKDIPGV 49 Query: 64 GDTIDVGLGP-IQVTSIRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAP 122 + + + + ++ ++ ++ +R Sbjct: 50 VRLDEFQVPSDVSTVVECASPEAVKEYSLQILKNPVNYIIISTSAFADEVFRERFFSELK 109 Query: 123 CKGVKKTIVYGV 134 + G Sbjct: 110 NSPARVFFPSGA 121 >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} Length = 362 Score = 30.8 bits (68), Expect = 0.50 Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 1/35 (2%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38 K + FG G+ + S + I + + Sbjct: 7 KTGLAAFGMSGQVFHAPFI-STNPHFELYKIVERS 40 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 30.2 bits (67), Expect = 0.67 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 11/84 (13%) Query: 228 GSS-IRVPTPNVSMVDLKCVTSRDVNIDEINATMKYFAEG-DLKNILGYVTLPLVSVDFN 285 GS+ I VP S D++ + I+ I T K G DL I+ + +P ++ Sbjct: 530 GSTLIVVPFNQGSKQDVEAL------IEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELE 583 Query: 286 HTSYSSIFAADQTKVVSQNLLRVL 309 H S FA +++ N+LR++ Sbjct: 584 HIDSKSEFAH---RIMLTNILRMM 604 >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} Length = 345 Score = 30.2 bits (66), Expect = 0.70 Identities = 10/39 (25%), Positives = 16/39 (41%) Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNS 39 MV A GFG+ V +R+D + I ++ Sbjct: 1 MVINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHA 39 >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} Length = 359 Score = 30.2 bits (67), Expect = 0.71 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38 KV + G G + L ++ + D+RIVA D + Sbjct: 7 KVGLVGIGAQMQENLLPSL-LQMQDIRIVAACDSD 40 >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* Length = 433 Score = 28.8 bits (63), Expect = 1.7 Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 1/35 (2%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38 AI G G+ + + RI A+ N Sbjct: 85 GYAIVGLGKYALNQILPGF-AGCQHSRIEALVSGN 118 >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* Length = 294 Score = 28.9 bits (64), Expect = 1.7 Identities = 8/36 (22%), Positives = 11/36 (30%), Gaps = 2/36 (5%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNS 39 V + G GR G LR + + S Sbjct: 9 GVVVVGVGRAGSVRLRDL--KDPRSAAFLNLIGFVS 42 >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosynthesis; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* Length = 322 Score = 28.7 bits (63), Expect = 2.2 Identities = 29/217 (13%), Positives = 58/217 (26%), Gaps = 4/217 (1%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVH-GRFPGEVKI 62 V G G++ + + + + + + LR V E Sbjct: 24 SVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQ 83 Query: 63 IGDTIDVGLGPIQVTSIRDPQDLPWGDVDVAMECT-GFFVTQEKASLHLSNGSQRVLVSA 121 D + + + P + I D D + + C G ++ + L + RV+ Sbjct: 84 HSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCM 143 Query: 122 PCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCL--VPVVHVLDKMFGIEKGYMTTVHS 179 V V + + + + + V ++ Sbjct: 144 TNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYA 203 Query: 180 YTGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVE 216 +T + D G R A GAAK + Sbjct: 204 FTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLL 240 >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Score = 28.6 bits (63), Expect = 2.2 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 4/46 (8%) Query: 1 MVCKVAINGFGRIG----RCILRAAVESRRDDVRIVAINDLNSIET 42 V + A + G IG R + E+ R VA+N L + ++ Sbjct: 158 WVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHKS 203 >3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488 Score = 28.4 bits (63), Expect = 2.2 Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 22/103 (21%) Query: 225 KLDGSSIRVPTPNVSMVDLKCVTSRDVNIDEINA--------TMKYFA---EGDLKNILG 273 KLD +R+P+P S++D++ D ID I+ T+ + + + Sbjct: 164 KLDDLGLRLPSPTFSVMDVERYVGGDKVIDVIDVARQADSKMTLHNYVKYFMNPNRPKVL 223 Query: 274 YVTLPLVSVDFNHTSYSSIFAADQTKVVSQNLLRVLVWYDNEW 316 V +S++F+ T S V ++ + L W +N W Sbjct: 224 NV----ISLEFSDTKMSE-------LVEVPDIAKKLSWVENYW 255 >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Score = 28.2 bits (62), Expect = 2.4 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 4/47 (8%) Query: 1 MVCKVAINGFGRIG----RCILRAAVESRRDDVRIVAINDLNSIETM 43 V + A + G IG R + E+ R VA+N L + +++ Sbjct: 153 WVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHKSL 199 >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* Length = 367 Score = 28.5 bits (62), Expect = 2.5 Identities = 18/127 (14%), Positives = 37/127 (29%), Gaps = 10/127 (7%) Query: 64 GDTIDVGLGPIQVTSIRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAP- 122 G + D + L +D+ + C G T E +G Q + A Sbjct: 42 QAAPSFGGTTGTLQDAFDLEALK--ALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAAS 99 Query: 123 ----CKGVKKTIVYGVNHQ---SLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMT 175 + LN + +CT + ++ + L ++ + Sbjct: 100 SLRMKDDAIIILDPVNQDVITDGLNNGIRTFVGGNCTVSLMLMSLGGLFANDLVDWVSVA 159 Query: 176 TVHSYTG 182 T + +G Sbjct: 160 TYQAASG 166 >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural genomics, joint center for structural genomics; 2.20A {Archaeoglobus fulgidus} Length = 327 Score = 28.3 bits (62), Expect = 2.8 Identities = 28/174 (16%), Positives = 57/174 (32%), Gaps = 22/174 (12%) Query: 4 KVAINGFGRIGRCILR------AAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFP 57 K+AI GFG +G+ + +E + ++ A+ D S + L R Sbjct: 4 KIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRET 63 Query: 58 GEVKIIGDTIDVGLGPIQVTSIRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRV 117 G ++ I+V ++ + VD ++ H+ ++ Sbjct: 64 GMLRDDAKAIEV----VRSADYDVLIEASVTRVDGGEGVNYIREALKRGK-HVVTSNKGP 118 Query: 118 LVSAPCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEK 171 LV+ SL + + V T +PVV + + + + Sbjct: 119 LVA-----------EFHGLMSLAERNGVRLMYEATVGGAMPVVKLAKRYLALCE 161 >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* Length = 358 Score = 28.0 bits (62), Expect = 3.1 Identities = 13/98 (13%), Positives = 26/98 (26%), Gaps = 9/98 (9%) Query: 2 VCKVAINGFGRIGRCILRAAVESRRD-DVRIVAINDLNSIETMAHLLRYDSVHGRFPGEV 60 V VA+ G G +G L + + +V + + L+ D + Sbjct: 4 VVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERS-----LISKDFSPLNVGSDW 58 Query: 61 KIIGDTIDVGLGPIQVTSIRDPQDLPWGDVDVAMECTG 98 K P+ + ++ T Sbjct: 59 KAALAASTTKTLPLDDLIAHLKTSP---KPVILVDNTS 93 >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} Length = 337 Score = 28.0 bits (60), Expect = 3.5 Identities = 6/36 (16%), Positives = 10/36 (27%), Gaps = 2/36 (5%) Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAIND 36 M K+ + G R L + +A Sbjct: 1 MSLKICVIGSSGHFRYALEGL--DEECSITGIAPGV 34 >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} Length = 480 Score = 27.6 bits (61), Expect = 4.5 Identities = 8/35 (22%), Positives = 13/35 (37%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38 + I GFG +G+ ++ E V I Sbjct: 15 RFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAE 49 >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} Length = 398 Score = 27.5 bits (59), Expect = 4.5 Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 2/37 (5%) Query: 4 KVAINGFGRIGRCILRAAVESRRDD--VRIVAINDLN 38 + A+ G G + + RD+ V + D++ Sbjct: 14 RWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDID 50 >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} Length = 467 Score = 27.5 bits (60), Expect = 4.7 Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 3/54 (5%) Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRI-VAINDLNSIETMAHLLRYDSVH 53 M V + G G + + ++ + DD+ + VA L + + +A ++ Sbjct: 22 MGKNVLLLGSGFVAQPVIDTL--AANDDINVTVACRTLANAQALAKPSGSKAIS 73 >1uvq_B HLA class II histocompatibility antigen; immunology, MHC class II, diabetes, narcolepsy, autoimmune disease, structural proteomics in europe, spine, structural genomics; HET: NAG FUC BMA; 1.8A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 1jk8_B* 2nna_B 1s9v_B 2iad_B 1muj_B* 1d9k_D* 1iak_B* 1jl4_B 1f3j_B* 2pxy_D 1k2d_B* 1u3h_D 2z31_D 1aqd_B 1klu_B 1jwm_B 1jws_B 1hxy_B 1klg_B 1jwu_B ... Length = 198 Score = 27.4 bits (60), Expect = 4.7 Identities = 8/18 (44%), Positives = 12/18 (66%) Query: 100 FVTQEKASLHLSNGSQRV 117 FV Q K + +NG++RV Sbjct: 5 FVFQFKGMCYFTNGTERV 22 >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} Length = 332 Score = 27.1 bits (58), Expect = 5.4 Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 2/35 (5%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38 + + G I R + A R +V++ + Sbjct: 2 RWGLIGASTIAREWVIGA--IRATGGEVVSMMSTS 34 >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* Length = 413 Score = 27.1 bits (60), Expect = 6.1 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 5/52 (9%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAI-NDLNSIETMAHLLRYDSVHG 54 +V I GFGR G+ R + S V++V + +D + IET+ +G Sbjct: 6 RVIIAGFGRFGQITGRLLLSS---GVKMVVLDHDPDHIETLRKFG-MKVFYG 53 >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural genomics, PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} Length = 218 Score = 27.0 bits (59), Expect = 6.1 Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 4/52 (7%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAI-NDLNSIETMAHLLRYDSVHG 54 KV I G + R+ + +V I D E A L+ +HG Sbjct: 2 KVIIIGGETTAYYLARSMLSR---KYGVVIINKDRELCEEFAKKLKATIIHG 50 >1fne_B Protein (MHC class II I-EK, beta chain); histocompatibility antigen, peptide, immune system; HET: NAG; 1.90A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1iea_B* 1i3r_B* 1fng_B* 1ktd_B* 1ieb_B* 1kt2_B* Length = 224 Score = 26.5 bits (58), Expect = 8.7 Identities = 8/19 (42%), Positives = 12/19 (63%) Query: 99 FFVTQEKASLHLSNGSQRV 117 +F+ K+ H NG+QRV Sbjct: 32 WFLEYCKSECHFYNGTQRV 50 >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 Length = 323 Score = 26.5 bits (57), Expect = 8.8 Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 1/36 (2%) Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAIND 36 M K+A+ G G I + + ++ D+ +V Sbjct: 1 MSLKIAMIGLGDIAQKAYLPVL-AQWPDIELVLCTR 35 >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* Length = 314 Score = 26.4 bits (57), Expect = 9.0 Identities = 25/189 (13%), Positives = 56/189 (29%), Gaps = 5/189 (2%) Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKII 63 V I G G +G ++ S +I + + E+++ + + K+ Sbjct: 35 NVLIVGVGFMGGSFAKSLRRSGF-KGKIYGYD--INPESISKAVDLGIIDEGTTSIAKVE 91 Query: 64 GDTIDVGLGPIQVTSIRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPC 123 + D + V + R+ + T + K L N + V Sbjct: 92 DFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVG--G 149 Query: 124 KGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSYTGD 183 + T GV + N + + T + ++ +++ G + + D Sbjct: 150 HPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSPELHD 209 Query: 184 QHVLDAGHS 192 H Sbjct: 210 YVFGVVSHL 218 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.319 0.134 0.393 Gapped Lambda K H 0.267 0.0483 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,751,120 Number of extensions: 122327 Number of successful extensions: 485 Number of sequences better than 10.0: 1 Number of HSP's gapped: 390 Number of HSP's successfully gapped: 91 Length of query: 333 Length of database: 5,693,230 Length adjustment: 93 Effective length of query: 240 Effective length of database: 3,438,538 Effective search space: 825249120 Effective search space used: 825249120 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (26.3 bits)