RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780654|ref|YP_003065067.1| Glyceraldehyde 3-Phosphate
Dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
(333 letters)
>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase;
microspectrophotometry, reaction intermediate, phosphate
binding site; HET: G3H NAD; 1.77A {Bacillus
stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O
1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O*
3dbv_O* 4dbv_O*
Length = 334
Score = 451 bits (1161), Expect = e-127
Identities = 171/331 (51%), Positives = 229/331 (69%), Gaps = 5/331 (1%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKII 63
KV INGFGRIGR + RAA++ D+ +VA+NDL T+AHLL+YDSVHGR EV +
Sbjct: 3 KVGINGFGRIGRNVFRAALK--NPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVN 60
Query: 64 GDTIDVGLGPIQVTSIRDPQDLPWG--DVDVAMECTGFFVTQEKASLHLSNGSQRVLVSA 121
G+ + V I V + RDP++L WG VD+ +E TG F +E A+ HL G+++V++SA
Sbjct: 61 GNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISA 120
Query: 122 PCKGVKKTIVYGVNHQSLNK-EDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSY 180
P K TIV GVN + V+SNASCTTNCL P VL + FGI +G MTTVHSY
Sbjct: 121 PAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSY 180
Query: 181 TGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPNVSM 240
T DQ +LD H DL R+RAAA S++PT+TGAAKAV LVLP LKGKL+G ++RVPTPNVS+
Sbjct: 181 TNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSV 240
Query: 241 VDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQTKV 300
VDL ++V ++E+NA +K AEG+LK IL Y PLVS D+N ++ SS A T V
Sbjct: 241 VDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMV 300
Query: 301 VSQNLLRVLVWYDNEWGFSNRMLDTASAMAN 331
+ +++V+ WYDNE G+S+R++D A+ +A+
Sbjct: 301 IDGKMVKVVSWYDNETGYSHRVVDLAAYIAS 331
>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann
fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A
{Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O*
1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A*
1gpd_G* 4gpd_1
Length = 335
Score = 444 bits (1145), Expect = e-126
Identities = 147/332 (44%), Positives = 200/332 (60%), Gaps = 7/332 (2%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAIND-LNSIETMAHLLRYDSVHGRFPGEVKI 62
KV +NGFGRIGR + RAA V IVAIND + M ++ +YDS HG+F G VK
Sbjct: 5 KVGVNGFGRIGRLVTRAAFN--SGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKA 62
Query: 63 IGDTIDVGLGPIQVTSIRDPQDLPWGD--VDVAMECTGFFVTQEKASLHLSNGSQRVLVS 120
+ + PI + RDP + WGD + +E TG F T EKA HL G++RV++S
Sbjct: 63 ENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIIS 122
Query: 121 APCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSY 180
AP V GVNH+ + K++SNASCTTNCL P+ V+ FGI +G MTTVH+
Sbjct: 123 APSADAP-MFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAI 181
Query: 181 TGDQHVLDAGHSDLYR-SRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPNVS 239
T Q +D L+R R A +++P STGAAKAV V+P L GKL G + RVPT NVS
Sbjct: 182 TATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANVS 241
Query: 240 MVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQTK 299
+VDL C + D+I +K +EG LK ILGY +VS DFN ++SS F A
Sbjct: 242 VVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAGI 301
Query: 300 VVSQNLLRVLVWYDNEWGFSNRMLDTASAMAN 331
++ + ++++ WYDNE+G+SNR++D + MA+
Sbjct: 302 ALNDHFVKLISWYDNEFGYSNRVVDLMAHMAS 333
>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1;
oxidoreductase, glycolysis, rossmann fold; HET: NAD;
1.70A {Staphylococcus aureus} PDB: 3l6o_Q 3k73_Q 3lc2_O*
3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q*
3ksz_O*
Length = 338
Score = 439 bits (1131), Expect = e-124
Identities = 149/341 (43%), Positives = 212/341 (62%), Gaps = 14/341 (4%)
Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEV 60
M KVAINGFGRIGR R E + + +VA+NDL + +AHLL+YD++ GRF GEV
Sbjct: 3 MAVKVAINGFGRIGRLAFRRIQE--VEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEV 60
Query: 61 KIIGDTIDVGLGPIQVTSIRDPQDLPWGD--VDVAMECTGFFVTQEKASLHLSNGSQRVL 118
+++ V ++ S D LPW D +DV +ECTGF+ ++KA H+ G+++VL
Sbjct: 61 EVVDGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVL 120
Query: 119 VSAPCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVH 178
+SAP G KTIV+ NHQ L+ + VVS ASCTTN L PV VL+ FG+ +G MTT+H
Sbjct: 121 ISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIH 180
Query: 179 SYTGDQHVLDAGH--SDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTP 236
+YTGDQ+ DA H D R+RAAA +++P STGAAKA+ V+P + GKLDG + RVP
Sbjct: 181 AYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVA 240
Query: 237 NVSMVDLKCVTSR-DVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAA 295
S+ +L V + DV ++++N MK + GY +VS D +Y S+F A
Sbjct: 241 TGSLTELTVVLEKQDVTVEQVNEAMKNASNE----SFGYTEDEIVSSDVVGMTYGSLFDA 296
Query: 296 DQTKVVSQ---NLLRVLVWYDNEWGFSNRMLDTASAMANLS 333
QT+V+S L++V WYDNE ++ +++ T + +A LS
Sbjct: 297 TQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAELS 337
>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway,
oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A
{Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB:
3gnq_A*
Length = 335
Score = 433 bits (1115), Expect = e-122
Identities = 181/334 (54%), Positives = 231/334 (69%), Gaps = 5/334 (1%)
Query: 4 KVAINGFGRIGRCILRAAVES-RRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKI 62
+VAING+GRIGR ILRA E + D+ IVAINDL +T AHL RYD+ HG+FPG V +
Sbjct: 3 RVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSV 62
Query: 63 IGDTIDVGLGPIQVTSIRDPQDLPWGD--VDVAMECTGFFVTQEKASLHLSNGSQRVLVS 120
G + V I+V + R+P LPWG VDV +ECTGFF T+EKA H+ G+++V++S
Sbjct: 63 NGSYMVVNGDKIRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIIS 122
Query: 121 APCKG-VKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHS 179
AP V T+VYGVNH +L D V+SNASCTTNCL P+V L+ G++ G MTTVH+
Sbjct: 123 APGGADVDATVVYGVNHGTLKSTDTVISNASCTTNCLAPLVKPLNDKLGLQDGLMTTVHA 182
Query: 180 YTGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPNVS 239
YT +Q + D H DL R+R+A +SM+PT TGAA AV VLP L GKL+G +IRVPT NVS
Sbjct: 183 YTNNQVLTDVYHEDLRRARSATMSMIPTKTGAAAAVGDVLPELDGKLNGYAIRVPTINVS 242
Query: 240 MVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQTK 299
+VDL V R+ ++E+N +K +EG+LK IL Y T PLVSVD+NH SS A TK
Sbjct: 243 IVDLSFVAKRNTTVEEVNGILKAASEGELKGILDYNTEPLVSVDYNHDPASSTVDASLTK 302
Query: 300 VVSQNLLRVLVWYDNEWGFSNRMLDTASAMANLS 333
VS L++V WYDNEWGFSNRMLDT A+ + +
Sbjct: 303 -VSGRLVKVSSWYDNEWGFSNRMLDTTVALMSAA 335
>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH,
RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET:
NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O
Length = 337
Score = 430 bits (1107), Expect = e-121
Identities = 146/333 (43%), Positives = 207/333 (62%), Gaps = 9/333 (2%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAIND-LNSIETMAHLLRYDSVHGRFPGEVKI 62
K+ INGFGRIGR + R A++ +DV +VA+ND + + M ++ +YD+VHG++
Sbjct: 5 KIGINGFGRIGRLVARVALQ--SEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIK 62
Query: 63 I--GDTIDVGLGPIQVTSIRDPQDLPWGD--VDVAMECTGFFVTQEKASLHLSNGSQRVL 118
I T+ +G P+ V IR+P ++PW + + +E TG F +EKA+ HL G+++V+
Sbjct: 63 IKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVV 122
Query: 119 VSAPCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVH 178
+SAP K V GVN + +VSNASCTTNCL P+ V+ FGI +G MTTVH
Sbjct: 123 ISAPSKDAP-MFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVH 181
Query: 179 SYTGDQHVLDAGHS-DLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPN 237
+ T Q +D S D RAA+ +++P+STGAAKAV VLP+L GKL G S RVPT +
Sbjct: 182 AITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVD 241
Query: 238 VSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQ 297
VS+VDL + + D I + +K +EG LK I+GYV LVS DF S SSIF A
Sbjct: 242 VSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKA 301
Query: 298 TKVVSQNLLRVLVWYDNEWGFSNRMLDTASAMA 330
++ N ++++ WYDNEWG+SNR++D MA
Sbjct: 302 GIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMA 334
>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycosomal;
irreversible inhibitor, protein-ligand complex,X-RAY,
glycolysis, NAD; HET: NAD; 1.80A {Trypanosoma cruzi}
PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O*
1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*
Length = 359
Score = 428 bits (1101), Expect = e-120
Identities = 151/352 (42%), Positives = 214/352 (60%), Gaps = 21/352 (5%)
Query: 1 MVCKVAINGFGRIGRCILRAAVES--RRDDVRIVAINDLN-SIETMAHLLRYDSVHGRFP 57
M KV INGFGRIGR + +A E ++ +VA+ D+N E A+ +RYD+VHG+F
Sbjct: 1 MPIKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFK 60
Query: 58 GEVKIIGDTIDVGLG---------PIQVTSIRDPQDLPWGD--VDVAMECTGFFVTQEKA 106
EV + V + V + R+P DLPWG V+ +E TG F + A
Sbjct: 61 YEVTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAA 120
Query: 107 SLHLSNGSQRVLVSAPCKGVKKTIVYGVNHQSL-NKEDKVVSNASCTTNCLVPVVHV-LD 164
HL G+++V++SAP G KT+V GVNH E VVSNASCTTNCL P+VHV +
Sbjct: 121 EGHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNASCTTNCLAPIVHVLVK 180
Query: 165 KMFGIEKGYMTTVHSYTGDQHVLDA-GHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLK 223
+ FG++ G MTT+HSYT Q +D D RAAA++++P++TGAAKAV +V+P+ +
Sbjct: 181 EGFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTQ 240
Query: 224 GKLDGSSIRVPTPNVSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVD 283
GKL G S RVPTP+VS+VDL +RD +I EI+A +K ++ +K ILGY LVS D
Sbjct: 241 GKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILGYTDEELVSAD 300
Query: 284 FNHTSYSSIFAADQTKVV----SQNLLRVLVWYDNEWGFSNRMLDTASAMAN 331
F + + SSI+ + T + +++ WYDNEWG+S+R++D MA+
Sbjct: 301 FINDNRSSIYDSKATLQNNLPKERRFFKIVSWYDNEWGYSHRVVDLVRHMAS 352
>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural
genomics, PSI, protein structure initiative; HET: NAD;
2.40A {Brucella melitensis biovar ABORTUS2308}
Length = 335
Score = 426 bits (1097), Expect = e-120
Identities = 211/334 (63%), Positives = 260/334 (77%), Gaps = 2/334 (0%)
Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEV 60
M +VAINGFGRIGR ILRA VES R D+++VAINDL +ET AHLLRYDSVHGRFP EV
Sbjct: 1 MAVRVAINGFGRIGRNILRAIVESGRTDIQVVAINDLGPVETNAHLLRYDSVHGRFPKEV 60
Query: 61 KIIGDTIDVGLGPIQVTSIRDPQDLPWGD--VDVAMECTGFFVTQEKASLHLSNGSQRVL 118
++ GDTIDVG GPI+V ++R+P +LPW + VD+A+ECTG F +++KA+LHL G++RV+
Sbjct: 61 EVAGDTIDVGYGPIKVHAVRNPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRVI 120
Query: 119 VSAPCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVH 178
VSAP G T+VYGVN+ L K+ V+SNASCTTNCL PV VL+ GIEKG+MTT+H
Sbjct: 121 VSAPADGADLTVVYGVNNDKLTKDHLVISNASCTTNCLAPVAQVLNDTIGIEKGFMTTIH 180
Query: 179 SYTGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPNV 238
SYTGDQ LD H DLYR+RAAA+SM+PTSTGAAKAV LVLP LKGKLDG +IRVPTPNV
Sbjct: 181 SYTGDQPTLDTMHKDLYRARAAALSMIPTSTGAAKAVGLVLPELKGKLDGVAIRVPTPNV 240
Query: 239 SMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQT 298
S+VDL + R+ ++E+N ++ A G LK ILGY LVS DFNH S+SS+F DQT
Sbjct: 241 SVVDLTFIAKRETTVEEVNNAIREAANGRLKGILGYTDEKLVSHDFNHDSHSSVFHTDQT 300
Query: 299 KVVSQNLLRVLVWYDNEWGFSNRMLDTASAMANL 332
KV+ ++R+L WYDNEWGFS+RM DTA A+ L
Sbjct: 301 KVMDGTMVRILSWYDNEWGFSSRMSDTAVALGKL 334
>2i5p_O GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; rossmann fold,
APO form, dimer, oxidoreductase; HET: GLC; 2.30A
{Kluyveromyces marxianus}
Length = 342
Score = 423 bits (1089), Expect = e-119
Identities = 143/334 (42%), Positives = 209/334 (62%), Gaps = 8/334 (2%)
Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAIND-LNSIETMAHLLRYDSVHGRFPGE 59
+ +AINGFGRIGR +LR A+E R ++ +VAIND S++ A++ +YDS HG++ GE
Sbjct: 13 QMVSIAINGFGRIGRLVLRIALE--RKNIDVVAINDPFISVDYAAYMFKYDSTHGKYKGE 70
Query: 60 VKIIGDTIDVGLGPIQVTSIRDPQDLPWGD--VDVAMECTGFFVTQEKASLHLSNGSQRV 117
V G + + + V +DP LPWG VD+A++ TG F + A H+ G+++V
Sbjct: 71 VSHDGSNLIINGKKVAVFQEKDPATLPWGKLGVDIAVDSTGVFKELDSAQKHIDAGAKKV 130
Query: 118 LVSAPCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTV 177
+++AP K V GVN N +K+VSNASCTTNCL P+ +++ FGIE+G MTTV
Sbjct: 131 VITAPSKTAPM-FVVGVNEDKYNG-EKIVSNASCTTNCLAPIAKIINDEFGIEEGLMTTV 188
Query: 178 HSYTGDQHVLDA-GHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTP 236
HS T Q +D H D R A+ +++P+STGAAKAV VLP L+GKL G + RVPT
Sbjct: 189 HSITATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTT 248
Query: 237 NVSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAAD 296
+VS+VDL + DEI A +K +EG LK+++GY +VS DF ++S+IF A
Sbjct: 249 DVSVVDLTVKLVKAATYDEIKAAVKKVSEGKLKDVVGYTEDAVVSSDFLGDTHSTIFDAA 308
Query: 297 QTKVVSQNLLRVLVWYDNEWGFSNRMLDTASAMA 330
+S ++++ WYDNE+G+S R++D +A
Sbjct: 309 AGIQLSPKFVKLVAWYDNEYGYSTRVVDLVEHVA 342
>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis,
malaria, structural genomics, oxidoreductase; HET: NAD;
1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A*
1vsu_A* 3chz_A 3cie_A* 3cif_A*
Length = 354
Score = 415 bits (1068), Expect = e-117
Identities = 149/338 (44%), Positives = 214/338 (63%), Gaps = 9/338 (2%)
Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAIND-LNSIETMAHLLRYDSVHGRFPGE 59
+ INGFGRIGR +LRA +E R+D+ +VAIND +E MA+LL+YDSVHG F G
Sbjct: 16 FQGTLGINGFGRIGRLVLRACME--RNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGT 73
Query: 60 VKIIGDTIDVGLGPIQVTSIRDPQDLPWG--DVDVAMECTGFFVTQEKASLHLSNGSQRV 117
V++ G + + ++V +DP ++PWG + E TG F T+EKASLHL G+++V
Sbjct: 74 VEVSGKDLCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKV 133
Query: 118 LVSAPCKGVKKTIVYGVNHQSLNKED-KVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTT 176
++SAP K V GVN+ + V+SNASCTTNCL P+ +++ FGI +G MTT
Sbjct: 134 IISAPPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTT 193
Query: 177 VHSYTGDQHVLDAGHS---DLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRV 233
VHS T +Q +D D R A +++P STGAAKAV V+P L GKL G +IRV
Sbjct: 194 VHSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRV 253
Query: 234 PTPNVSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIF 293
PTP+VS+VDL C ++ +I+EI +K + G +K I+GY + +VS DF YSSIF
Sbjct: 254 PTPDVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSIF 313
Query: 294 AADQTKVVSQNLLRVLVWYDNEWGFSNRMLDTASAMAN 331
+ ++ + ++++ WYDNE G+SNR++D A +A+
Sbjct: 314 DKNACIALNDSFVKLISWYDNESGYSNRLVDLAVYVAS 351
>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold,
protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A
{Synechococcus SP} PDB: 2duu_A
Length = 380
Score = 408 bits (1049), Expect = e-114
Identities = 164/334 (49%), Positives = 219/334 (65%), Gaps = 4/334 (1%)
Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEV 60
M +VAINGFGRIGR LR + D+ +VAIN+ + T AHLL YDSV GRF ++
Sbjct: 1 MTIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADI 60
Query: 61 KIIGDTIDVGLGPIQVTSIRDPQDLPWG--DVDVAMECTGFFVTQEKASLHLSNGSQRVL 118
++I V +++ R+P +LPW D+D+ +E TG FVT E AS H+ G+++VL
Sbjct: 61 SYDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVL 120
Query: 119 VSAPCKG-VKKTIVYGVNHQSLNKED-KVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTT 176
++AP K T V GVN ED V+SNASCTTNCL PV VL FGI KG MTT
Sbjct: 121 ITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTMTT 180
Query: 177 VHSYTGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTP 236
HSYT DQ +LDA H DL R+RAAA+++VPT+TGAAKAV LV+P LKGKL+G ++RVPTP
Sbjct: 181 THSYTLDQRILDASHRDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRVPTP 240
Query: 237 NVSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAAD 296
NVS+VDL + +++N ++ ++ +K I+ Y LPLVS DF T SSI +
Sbjct: 241 NVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIVDSS 300
Query: 297 QTKVVSQNLLRVLVWYDNEWGFSNRMLDTASAMA 330
T V+ +L++V+ WYDNEWG+S R++D A A
Sbjct: 301 LTLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAA 334
>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase
(aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.3 d.81.1.1
Length = 332
Score = 407 bits (1048), Expect = e-114
Identities = 165/331 (49%), Positives = 226/331 (68%), Gaps = 2/331 (0%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKII 63
+VAINGFGRIGR + R E + D+ +VAINDL +T+AHLL+YDSVH +FPG+V+
Sbjct: 2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYT 61
Query: 64 GDTIDVGLGPIQVTSIRDPQDLPWGD--VDVAMECTGFFVTQEKASLHLSNGSQRVLVSA 121
+++ V I+V + DP LPW D VD +E TG F +EKA LHL G+++V+++A
Sbjct: 62 ENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITA 121
Query: 122 PCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSYT 181
P KG T+V G N L E ++S ASCTTN + P+V VL + FGI G +TTVHSYT
Sbjct: 122 PAKGEDITVVIGCNEDQLKPEHTIISCASCTTNSIAPIVKVLHEKFGIVSGMLTTVHSYT 181
Query: 182 GDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPNVSMV 241
DQ VLD H DL R+RAAA++++PT+TGAAKAV LV+P +KGKLDG +IRVPTP+ S+
Sbjct: 182 NDQRVLDLPHKDLRRARAAAVNIIPTTTGAAKAVALVVPEVKGKLDGMAIRVPTPDGSIT 241
Query: 242 DLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQTKVV 301
DL + ++ ++E+NA MK EG LK I+GY P+VS D T++S IF A T V+
Sbjct: 242 DLTVLVEKETTVEEVNAVMKEATEGRLKGIIGYNDEPIVSSDIIGTTFSGIFDATITNVI 301
Query: 302 SQNLLRVLVWYDNEWGFSNRMLDTASAMANL 332
L++V WYDNE+G+SNR++DT + +
Sbjct: 302 GGKLVKVASWYDNEYGYSNRVVDTLELLLKM 332
>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold,
GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A
{Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O*
2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 2pkq_O*
Length = 337
Score = 402 bits (1034), Expect = e-113
Identities = 170/331 (51%), Positives = 224/331 (67%), Gaps = 3/331 (0%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKII 63
KVAINGFGRIGR LR + + +V IND ++ +HLL+YDS+ G F +VK
Sbjct: 3 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTA 62
Query: 64 GDTIDVGLG-PIQVTSIRDPQDLPWGD--VDVAMECTGFFVTQEKASLHLSNGSQRVLVS 120
GD+ G I+V S R+P +LPWGD +D+ +E TG FV ++ A HL G+++VL++
Sbjct: 63 GDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLIT 122
Query: 121 APCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSY 180
AP KG T V GVN + D ++SNASCTTNCL P V VLD+ FGI KG MTT HSY
Sbjct: 123 APGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSY 182
Query: 181 TGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPNVSM 240
TGDQ +LDA H DL R+RAA +++VPTSTGAAKAV LVLPNLKGKL+G ++RVPTPNVS+
Sbjct: 183 TGDQRLLDASHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSV 242
Query: 241 VDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQTKV 300
VDL S+ +E+NA + A+ +LK IL PLVS+DF T SS + T V
Sbjct: 243 VDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMV 302
Query: 301 VSQNLLRVLVWYDNEWGFSNRMLDTASAMAN 331
+ ++++V+ WYDNEWG+S R++D A +AN
Sbjct: 303 MGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 333
>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase,
structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex
aeolicus}
Length = 342
Score = 401 bits (1033), Expect = e-113
Identities = 163/341 (47%), Positives = 220/341 (64%), Gaps = 14/341 (4%)
Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEV 60
M KV INGFGRIGR RA+ R+++ IVAINDL + +AHLL+YDSVHG F G V
Sbjct: 1 MAIKVGINGFGRIGRSFFRASWG--REEIEIVAINDLTDAKHLAHLLKYDSVHGIFKGSV 58
Query: 61 KIIGDTIDVGLGPIQVTSIRDPQDLPWGD--VDVAMECTGFFVTQEKASLHLSNGSQRVL 118
+ D+I V I+V + +DP +PWGD VDV +E TG F +E AS HL G+++V+
Sbjct: 59 EAKDDSIVVDGKEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVI 118
Query: 119 VSAPCKGVKKTIVYGVNHQSLNKED-KVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTV 177
++AP K T+V GVN + N ++ ++SNASCTTNCL P V VL++ FG+EKGYM TV
Sbjct: 119 ITAPAKNPDITVVLGVNEEKYNPKEHNIISNASCTTNCLAPCVKVLNEAFGVEKGYMVTV 178
Query: 178 HSYTGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPN 237
H+YT DQ +LD H D R+RAAAI++VPT+TGAAKA+ V+P LKGKLDG++ RVP P+
Sbjct: 179 HAYTNDQRLLDLPHKDFRRARAAAINIVPTTTGAAKAIGEVIPELKGKLDGTARRVPVPD 238
Query: 238 VSMVDLKCVTSRDVNIDEINATMKYFA--------EGDLKNILGYVTLPLVSVDFNHTSY 289
S++DL V ++ + E A + LK IL Y P+VS D +
Sbjct: 239 GSLIDLTVVVNKAPSSVEEVNEKFREAAQKYRESGKVYLKEILQYCEDPIVSTDIVGNPH 298
Query: 290 SSIFAADQTKVVSQNLLRVLVWYDNEWGFSNRMLDTASAMA 330
S+IF A T+V+ NL+ + WYDNEWG+S R+ D +A
Sbjct: 299 SAIFDAPLTQVID-NLVHIAAWYDNEWGYSCRLRDLVIYLA 338
>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural
genomics, PSI, protein structure initiative, GAPDH,
oxidoreductase; HET: NAD AES; 2.25A {Plasmodium
falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*
Length = 345
Score = 400 bits (1028), Expect = e-112
Identities = 151/336 (44%), Positives = 203/336 (60%), Gaps = 8/336 (2%)
Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAIND-LNSIETMAHLLRYDSVHGRFPGE 59
K+ INGFGRIGR + RAA R D+ +VAIND + + +LL+YDSVHG+FP E
Sbjct: 10 AATKLGINGFGRIGRLVFRAAFG--RKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCE 67
Query: 60 VKIIGDTIDVGLGPIQVTSIRDPQDLPWGD--VDVAMECTGFFVTQEKASLHLSNGSQRV 117
V + +G + V + +DP +PWG VDV E TG F+T+E AS HL G+++V
Sbjct: 68 VTHADGFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKV 127
Query: 118 LVSAPCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTV 177
++SAP K V G+NH + + +VSNASCTTNCL P+ V++ FGI +G MTTV
Sbjct: 128 IMSAPPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTV 187
Query: 178 HSYTGDQHVLDAGH---SDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVP 234
H+ T +Q V+D D R A +++P STGAAKAV VLP L GKL G + RVP
Sbjct: 188 HASTANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAKAVGKVLPELNGKLTGVAFRVP 247
Query: 235 TPNVSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFA 294
VS+VDL C + +E+ +K AEG LK ILGY +VS DF H + SSIF
Sbjct: 248 IGTVSVVDLVCRLQKPAKYEEVALEIKKAAEGPLKGILGYTEDEVVSQDFVHDNRSSIFD 307
Query: 295 ADQTKVVSQNLLRVLVWYDNEWGFSNRMLDTASAMA 330
++ N +++ WYDNEWG+SNR+LD A +
Sbjct: 308 MKAGLALNDNFFKLVSWYDNEWGYSNRVLDLAVHIT 343
>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid,
decode, UW, SBRI, LYME disease, non-hodgkin lymphomas,
cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}
Length = 356
Score = 396 bits (1018), Expect = e-111
Identities = 151/336 (44%), Positives = 205/336 (61%), Gaps = 12/336 (3%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKII 63
K+AINGFGRIGR + + A E + IVAINDL +T+AHLL+YDS G + +V+
Sbjct: 23 KLAINGFGRIGRNVFKIAFER---GIDIVAINDLTDPKTLAHLLKYDSTFGVYNKKVESR 79
Query: 64 GDTIDVGLGPIQVTSIRDPQDLPWGDVDVAMECTGFFVTQEKA-------SLHLSNGSQR 116
I V I++ + RDP++LPW + + + V G+++
Sbjct: 80 DGAIVVDGREIKIIAERDPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAGAKK 139
Query: 117 VLVSAPCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTT 176
V+++ P K KTIV GVN +N + K VSNASCTTNCL P+ VL + FGIE+G MTT
Sbjct: 140 VILTVPAKDEIKTIVLGVNDHDINSDLKAVSNASCTTNCLAPLAKVLHESFGIEQGLMTT 199
Query: 177 VHSYTGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTP 236
VH+YT DQ +LD HSDL R+RAAA+S++PTSTGAAKAV LVLP LKGKL+G+S+RVP P
Sbjct: 200 VHAYTNDQRILDLPHSDLRRARAAALSIIPTSTGAAKAVGLVLPELKGKLNGTSMRVPVP 259
Query: 237 NVSMVDLKCVTSRDVNIDEINATMKYFA--EGDLKNILGYVTLPLVSVDFNHTSYSSIFA 294
S+VDL + E ++ A +LK ILGY P+VS D S+SSI
Sbjct: 260 TGSIVDLTVQLKKKDVTKEEINSVLRKASETPELKGILGYTEDPIVSSDIKGNSHSSIVD 319
Query: 295 ADQTKVVSQNLLRVLVWYDNEWGFSNRMLDTASAMA 330
+T V+ ++L WYDNE+G+S R++D A +
Sbjct: 320 GLETMVLENGFAKILSWYDNEFGYSTRVVDLAQKLV 355
>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase
(aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia
coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A*
1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*
Length = 330
Score = 389 bits (1001), Expect = e-109
Identities = 148/330 (44%), Positives = 206/330 (62%), Gaps = 6/330 (1%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKII 63
KV INGFGRIGR + RAA + R D+ IVAINDL + MA++L+YDS HGRF G V++
Sbjct: 3 KVGINGFGRIGRIVFRAAQK--RSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVK 60
Query: 64 GDTIDVGLGPIQVTSIRDPQDLPWG--DVDVAMECTGFFVTQEKASLHLSNGSQRVLVSA 121
+ V I+VT+ RDP +L W VDV E TG F+T E A H++ G+++V+++
Sbjct: 61 DGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTG 120
Query: 122 PCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSYT 181
P K V G N +VSNASCTTNCL P+ V++ FGI +G MTTVH+ T
Sbjct: 121 PSKDNTPMFVKGANFD-KYAGQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATT 179
Query: 182 GDQHVLDA-GHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPNVSM 240
Q +D H D R A+ +++P+STGAAKAV VLP L GKL G + RVPTPNVS+
Sbjct: 180 ATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSV 239
Query: 241 VDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQTKV 300
VDL + ++I A +K AEG++K +LGY +VS DFN +S+F A
Sbjct: 240 VDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIA 299
Query: 301 VSQNLLRVLVWYDNEWGFSNRMLDTASAMA 330
++ N ++++ WYDNE G+SN++LD + ++
Sbjct: 300 LNDNFVKLVSWYDNETGYSNKVLDLIAHIS 329
>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis,
oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A
{Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O*
1vc2_A*
Length = 331
Score = 372 bits (956), Expect = e-104
Identities = 156/331 (47%), Positives = 215/331 (64%), Gaps = 7/331 (2%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKII 63
KV INGFGRIGR + R V + INDL +T+AHLL+YDS++ RFPGEV
Sbjct: 2 KVGINGFGRIGRQVFRILHSR---GVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYD 58
Query: 64 GDTIDVGLGPIQVTSIRDPQDLPWG--DVDVAMECTGFFVTQEKASLHLSNGSQRVLVSA 121
+ V I+ T+++DP+++PW V V +E TG F +KA HL G+++V+++A
Sbjct: 59 DQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITA 118
Query: 122 PCKGVKKTIVYGVNHQSLNKED-KVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSY 180
P KG TIV GVNH++ + ++SNASCTTN L PV+ VL++ FG+EK MTTVHSY
Sbjct: 119 PAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSY 178
Query: 181 TGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPNVSM 240
T DQ +LD H DL R+RAAAI+++PT+TGAAKA LVLP+LKG+ DG ++RVPT S+
Sbjct: 179 TNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSI 238
Query: 241 VDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQTKV 300
D+ + R+V +E+NA +K AEG LK IL Y +V D +SSI A TK
Sbjct: 239 SDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKA 298
Query: 301 VSQNLLRVLVWYDNEWGFSNRMLDTASAMAN 331
+ N+++V WYDNEWG++NR+ D +
Sbjct: 299 LG-NMVKVFAWYDNEWGYANRVADLVELVLR 328
>3h9e_A Glyceraldehyde-3-phosphate dehydrogenase, testis- specific;
oxidoreductase, structural genomics, structural genomics
consortium, SGC, cytoplasm; HET: NAD; 1.72A {Homo
sapiens} PDB: 2vyn_D* 2vyv_D*
Length = 346
Score = 357 bits (917), Expect = 2e-99
Identities = 134/331 (40%), Positives = 194/331 (58%), Gaps = 7/331 (2%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAIND-LNSIETMAHLLRYDSVHGRFPGEVKI 62
V INGFGRIGR +LRA +E V++VA+ND E M ++ +YDS HGR+ G V+
Sbjct: 9 TVGINGFGRIGRLVLRACMEK---GVKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGSVEF 65
Query: 63 IGDTIDVGLGPIQVTSIRDPQDLPWG--DVDVAMECTGFFVTQEKASLHLSNGSQRVLVS 120
+ V I V ++P+ +PW +E TG +++ + AS H+S G+QRV++S
Sbjct: 66 RNGQLVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVIS 125
Query: 121 APCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSY 180
AP ++ + +VSNASCTTNCL P+ V+ + FGI +G MTTVHSY
Sbjct: 126 APSPDAPMFVMGVNENDYNPGSMNIVSNASCTTNCLAPLAKVIHERFGIVEGLMTTVHSY 185
Query: 181 TGDQHVLDAGHSDLYR-SRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPNVS 239
T Q +D +R R A +++P STGAAKAV V+P LKGKL G + RVPTP+VS
Sbjct: 186 TATQKTVDGPSRKAWRDGRGAHQNIIPASTGAAKAVTKVIPELKGKLTGMAFRVPTPDVS 245
Query: 240 MVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQTK 299
+VDL C ++ I +K A+G + IL Y +VS DF ++SSIF A
Sbjct: 246 VVDLTCRLAQPAPYSAIKEAVKAAAKGPMAGILAYTEDEVVSTDFLGDTHSSIFDAKAGI 305
Query: 300 VVSQNLLRVLVWYDNEWGFSNRMLDTASAMA 330
++ N ++++ WYDNE+G+S+R++D M
Sbjct: 306 ALNDNFVKLISWYDNEYGYSHRVVDLLRYMF 336
>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde
3-phosphate binding, alpha and beta proteins (A/B)
class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus
jannaschii}
Length = 343
Score = 265 bits (678), Expect = 1e-71
Identities = 51/339 (15%), Positives = 107/339 (31%), Gaps = 21/339 (6%)
Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEV 60
M KV ING+G IG+ + A +DD+ ++ + +V + V
Sbjct: 1 MPAKVLINGYGSIGKRVADAVSM--QDDMEVIGVTKTK-----PDFEARLAVEKGYKLFV 53
Query: 61 KIIGDTIDVGLGPIQVTSIRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVS 120
I + + D+ D D+ ++ + ++ + ++
Sbjct: 54 AIPDNERVKLFEDAGIPVEGTILDIIE-DADIVVDGAPKKIGKQNLENIYKPHKVKAILQ 112
Query: 121 APCKGVKKTIVYGVNH-QSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHS 179
K + + V SC T L +++ ++ + I+K + V
Sbjct: 113 GGEKAKDVEDNFNALWSYNRCYGKDYVRVVSCNTTGLCRILYAINSIADIKKARIVLVRR 172
Query: 180 YTGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPNVS 239
A + V + V V+P +GK+ S++ VPT +
Sbjct: 173 AADPNDDKTG------PVNAITPNPVTVPSHHGPDVVSVVPEFEGKILTSAVIVPTTLMH 226
Query: 240 MVDLKCVTSRDVNIDEINATM----KYFAEGDLKNILGYVTLPLVSVDFNH--TSYSSIF 293
M L DV+ D+I + + + D + +
Sbjct: 227 MHTLMVEVDGDVSRDDILEAIKKTPRIITVRAEDGFSSTAKIIEYGRDLGRLRYDINELV 286
Query: 294 AADQTKVVSQNLLRVLVWYDNEWGFSNRMLDTASAMANL 332
+++ V +N + ++ E +D AM +
Sbjct: 287 VWEESINVLENEIFLMQAVHQESIVIPENIDCIRAMLQM 325
>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase); archaea,
hyperthermophIle, GAPDH, hyperthermophilic
dehydrogenase; 2.05A {Sulfolobus solfataricus} SCOP:
c.2.1.3 d.81.1.1
Length = 340
Score = 246 bits (629), Expect = 6e-66
Identities = 47/341 (13%), Positives = 109/341 (31%), Gaps = 32/341 (9%)
Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN-SIETMAHLLRYDSVHGRFPGE 59
MV VA+NG+G IG+ + A ++ + D+++V + + + E R ++
Sbjct: 1 MV-NVAVNGYGTIGKRVADAIIK--QPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSI 57
Query: 60 VKIIGDTIDVGLGPIQVTSIRDPQDLPWG--DVDVAMECTGFFVTQEKASLHLSNGSQRV 117
K I V + D+ ++ T V + ++L +
Sbjct: 58 KKFEESGIPV------------AGTVEDLIKTSDIVVDTTPNGVGAQYKPIYLQLQRNAI 105
Query: 118 LVSAPCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTV 177
V + + + K + SC T L+ + ++K+ +EK T V
Sbjct: 106 FQGGEKAEVADISFSALCNYNEALGKKYIRVVSCNTTALLRTICTVNKVSKVEKVRATIV 165
Query: 178 HSYTGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPN 237
+ ++ + ++ P + + A ++ + ++ PT
Sbjct: 166 RRAADQK--------EVKKGPINSLVPDPATVPSHHAKDVNSVIRNLDIATMAVIAPTTL 217
Query: 238 VSMVDLKCVTSRDVNIDEINATMKYFAE----GDLKNILGYVTLPLVSVD--FNHTSYSS 291
+ M + V +I + ++ + L V+ D +
Sbjct: 218 MHMHFINITLKDKVEKKDILSVLENTPRIVLISSKYDAEATAELVEVARDLKRDRNDIPE 277
Query: 292 IFAADQTKVVSQNLLRVLVWYDNEWGFSNRMLDTASAMANL 332
+ + V + + ++ E +D A L
Sbjct: 278 VMIFSDSIYVKDDEVMLMYAVHQESIVVPENIDAIRASMKL 318
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD,
oxidoreductase, structural genomics, NPPSFA; HET: NAD;
2.00A {Pyrococcus horikoshii OT3} SCOP: c.2.1.3 d.81.1.1
Length = 334
Score = 243 bits (620), Expect = 6e-65
Identities = 49/341 (14%), Positives = 99/341 (29%), Gaps = 34/341 (9%)
Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEV 60
M KV +NG+G IG+ + A + +DD+ ++ I + A+ + + E
Sbjct: 1 MKVKVGVNGYGTIGKRVAYAVTK--QDDMELIGITKT-KPDFEAYRAKELGIPVYAASEE 57
Query: 61 KIIGDTIDVGLGPIQVTSIRDPQDLPWGD--VDVAMECTGFFVTQEKASLHLSNGSQRVL 118
I + L VD+ ++ T + + L+ G + +
Sbjct: 58 FIPR---------FEKEGFEVAGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIF 108
Query: 119 VSAPCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVH 178
V + + V SC T LV + + + M
Sbjct: 109 QGGEKADVAEVSFVAQANYEAALGKNYVRVVSCNTTGLVRTLSAIREYADYVYAVMIRRA 168
Query: 179 SYTGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPNV 238
+ D R ++ PT + V + ++ + VPT +
Sbjct: 169 ADPNDTK------------RGPINAIKPTVEVPSHHGPDVQTVIPINIETMAFVVPTTLM 216
Query: 239 SMVDLKCVTSRDVNIDEINATMKYFAEGDL----KNILGYVTLPLVSVDFNHT---SYSS 291
+ + + + D++ + L K + + D + Y
Sbjct: 217 HVHSVMVELKKPLTKDDVIDIFENTTRVLLFEKEKGFDSTAQIIEFARDLHREWNNLYEI 276
Query: 292 IFAADQTKVVSQNLLRVLVWYDNEWGFSNRMLDTASAMANL 332
+ + N L + E +D AM L
Sbjct: 277 AVWKESINIKG-NRLFYIQAVHQESDVIPENIDAIRAMFEL 316
>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase;
HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3
d.81.1.1
Length = 337
Score = 225 bits (575), Expect = 9e-60
Identities = 50/328 (15%), Positives = 103/328 (31%), Gaps = 28/328 (8%)
Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN-SIETMAHLLRYDSVHGRFPGE 59
M VAING+G +G+ + A + +DD++++ ++ E L + ++ P
Sbjct: 1 MK-AVAINGYGTVGKRVADAIAQ--QDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPER 57
Query: 60 VKIIGDTIDVGLGPIQVTSIRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLV 119
VK+ I+V D + D+ ++CT + + ++ G + +
Sbjct: 58 VKLFEK------AGIEVAGTVDDM---LDEADIVIDCTPEGIGAKNLKMYKEKGIKAIFQ 108
Query: 120 SAPCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHS 179
+++ + SC T L + L FGI+K V
Sbjct: 109 GGEKHEDIGLSFNSLSNYEESYGKDYTRVVSCNTTGLCRTLKPLHDSFGIKKVRAVIVRR 168
Query: 180 YTGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAV-ELVLPNLKGKLDGSSIRVPTPNV 238
S+ +++P V L +D ++ VPT +
Sbjct: 169 GADPAQ----------VSKGPINAIIPNPPKLPSHHGPDVKTVLDINIDTMAVIVPTTLM 218
Query: 239 SMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQT 298
++ +D+I + + IL L S + +
Sbjct: 219 HQHNVMVEVEETPTVDDIIDVFE----DTPRVILISAEDGLTSTAEIMEYAKELGRSRND 274
Query: 299 KVVSQNLLRVLVWYDNEWGFSNRMLDTA 326
+ DNE + + +
Sbjct: 275 LFEIPVWRESITVVDNEIYYMQAVHQES 302
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 67.3 bits (164), Expect = 5e-12
Identities = 74/372 (19%), Positives = 111/372 (29%), Gaps = 160/372 (43%)
Query: 17 ILRAAVESRRDDVRIVAI-----NDLNSIETMAHLLRYDSVHGRFPGEVKIIGDTIDVGL 71
+ RA + ++VAI N + E + L Y + H ++GD I
Sbjct: 145 LFRAV---GEGNAQLVAIFGGQGNTDDYFEELRDL--YQTYHV-------LVGDLIKF-S 191
Query: 72 GPIQVTSIRDPQD-----------LPWGDVDVAMECTGFFVTQEKASLHLSNGSQR---- 116
IR D L W L N S
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEW----------------------LENPSNTPDKD 229
Query: 117 VLVSAPCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVH--VLDKMFGIEKGYM 174
L+S P +S C ++ + H V K+ G G +
Sbjct: 230 YLLSIP-----------------------IS---CPLIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 175 ------TTVHSYTGDQHVLDAGHSDLYRSRAAAISMVPTS-----TGAAKAVELVL---- 219
T HS Q ++ A AI+ S KA+ ++
Sbjct: 264 RSYLKGATGHS----QGLV----------TAVAIAET-DSWESFFVSVRKAITVLFFIGV 308
Query: 220 ------PNLKGKLDGS----SIR----VPTPNVSMVDLKCVTSRDVNIDEINATMKYFAE 265
PN L S S+ VP+P +S+ +L +++ D +N T +
Sbjct: 309 RCYEAYPNTS--LPPSILEDSLENNEGVPSPMLSISNL----TQEQVQDYVNKTNSHLPA 362
Query: 266 GD-----LKNILGY----VTLPLVS-VDFNHTSYSSIFAA---DQTKV-VSQNLLRVLVW 311
G L N G V+ P S N T A DQ+++ S+ R L
Sbjct: 363 GKQVEISLVN--GAKNLVVSGPPQSLYGLNLT-LRKAKAPSGLDQSRIPFSE---RKLK- 415
Query: 312 YDNEWGFSNRML 323
FSNR L
Sbjct: 416 ------FSNRFL 421
Score = 46.9 bits (111), Expect = 7e-06
Identities = 49/299 (16%), Positives = 90/299 (30%), Gaps = 118/299 (39%)
Query: 61 KIIGDTIDVGLG-PIQVTSIRDPQDLPWGDVDVAMECTGFFVTQEKA-SLHLSNGSQRVL 118
I+ D+++ G P + SI + L V + T + K + L NG++ ++
Sbjct: 322 SILEDSLENNEGVPSPMLSISN---LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV 378
Query: 119 VSAPCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVH 178
VS P + +YG+N L K S G+
Sbjct: 379 VSGPPQS-----LYGLNLT-LRK----AKAPS-----------------GL--------- 402
Query: 179 SYTGDQHVLDAGHSDLYRSRAAAISM--VPTSTGA-------AKAVELVLPNLKG---KL 226
DQ + + R S +P + + A +L+ +L
Sbjct: 403 ----DQSRI------PFSERKLKFSNRFLPVA--SPFHSHLLVPASDLINKDLVKNNVSF 450
Query: 227 DGSSIRVP-------------TPNV--SMVDLKCVTSRDVN------------IDEINAT 259
+ I++P + ++ +VD C+ V +D
Sbjct: 451 NAKDIQIPVYDTFDGSDLRVLSGSISERIVD--CIIRLPVKWETTTQFKATHILD----- 503
Query: 260 MKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQTKVVSQNLLRVLVWYDNEWGF 318
F G + G L + + T I A + N D+++GF
Sbjct: 504 ---FGPGGASGL-G----VLTHRNKDGTGVRVIVAGT----LDINP-------DDDYGF 543
Score = 40.7 bits (95), Expect = 5e-04
Identities = 44/261 (16%), Positives = 66/261 (25%), Gaps = 122/261 (46%)
Query: 8 NGFGR------IGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVH-----GRF 56
N G I + + V+ +N NS HL V G
Sbjct: 330 NNEGVPSPMLSI-SNLTQEQVQDY--------VNKTNS-----HLPAGKQVEISLVNGA- 374
Query: 57 PGEVKIIGDTIDVGLGPIQ-----VTSIRD---PQDL-----PWGDVDVAMECTGFFVTQ 103
+ V GP Q ++R P L P F ++
Sbjct: 375 --------KNLVVS-GPPQSLYGLNLTLRKAKAPSGLDQSRIP-------------F-SE 411
Query: 104 EKA--------------SLHLSNGSQRVLVSAPCKGVK------KTIVY----GVNHQSL 139
K S L S + V + VY G + + L
Sbjct: 412 RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL 471
Query: 140 --NKEDKVVS-------NASCTTNCLVPVVHVLDKMFG------IEKGYMT--------- 175
+ +++V TT H+LD FG + G +T
Sbjct: 472 SGSISERIVDCIIRLPVKWETTTQF--KATHILD--FGPGGASGL--GVLTHRNKDGTGV 525
Query: 176 -TVHSYTGDQHVLDAGHSDLY 195
+ + G LD D Y
Sbjct: 526 RVIVA--GT---LDINPDDDY 541
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG,
PSI-2, protein structure initiative; HET: MSE EPE; 1.80A
{Porphyromonas gingivalis W83}
Length = 304
Score = 39.9 bits (93), Expect = 7e-04
Identities = 51/268 (19%), Positives = 85/268 (31%), Gaps = 67/268 (25%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKII 63
+ AI G+G IGR L+A D I I N E L + V
Sbjct: 11 RAAIVGYGNIGRYALQAL--REAPDFEIAGIVRRNPAEVPFELQPFRVVS---------- 58
Query: 64 GDTIDVGLGPIQVTSIRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPC 123
D + L VDVA+ C+ + A L G
Sbjct: 59 -----------------DIEQLE--SVDVALVCSPSREVERTALEILKKG---------- 89
Query: 124 KGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSYTGD 183
T H + + + +A+ + + G + G + V +
Sbjct: 90 ---ICTADSFDIHDGILALRRSLGDAAGKSGAAAVI------ASGWDPGSDSVVRTL--M 138
Query: 184 QHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPN-VSMVD 242
Q ++ G + Y + +SM T A KA++ G S+ +P V
Sbjct: 139 QAIVPKGIT--YTNFGPGMSMGHTV--AVKAID-------GVKAALSMTIPLGTGVHRRM 187
Query: 243 LKCVTSRDVNIDEINATMK---YFAEGD 267
+ N++E++A +K YF +
Sbjct: 188 VYVELLPGHNLEEVSAAIKADEYFVHDE 215
>2o4u_X Dimeric dihydrodiol dehydrogenase; NADP-binding rossmann-fold
domain, predominantly anti- parallel beta sheet,
oxidoreductase; 2.00A {Macaca fascicularis} PDB: 2o48_X
2poq_X*
Length = 334
Score = 36.0 bits (81), Expect = 0.012
Identities = 7/38 (18%), Positives = 13/38 (34%)
Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38
M + I G I R + ++VA+ +
Sbjct: 1 MALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARD 38
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics; HET: MSE NAD EPE; 2.15A
{Salmonella typhimurium LT2}
Length = 357
Score = 35.6 bits (80), Expect = 0.016
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNS 39
M K I G G IG LR + V +VA+ D+ +
Sbjct: 22 MTLKAGIVGIGMIGSDHLRRLANT-VSGVEVVAVCDIVA 59
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 2.30A {Enterococcus faecalis} PDB:
3fd8_A* 3hnp_A
Length = 349
Score = 35.4 bits (80), Expect = 0.021
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVH 53
M K+ GFG+ V R+ + + I DL+ E A + V+
Sbjct: 1 MTVKMGFIGFGKSANRYHLPYV-MIRETLEVKTIFDLHVNEKAAAPFKEKGVN 52
>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change,
half-OF-sites-reactivity, protein evolution, sequence
homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A*
2r00_C*
Length = 336
Score = 34.9 bits (79), Expect = 0.022
Identities = 19/108 (17%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 79 IRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCKGVKKT--IVYGVNH 136
+++ ++ W V +A+ G ++ + A + G + ++ + +V VN
Sbjct: 55 VQNVEEFDWSQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNP 114
Query: 137 QSLN--KEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSYTG 182
+++ + +++N +C+T ++ + + GIE+ +TT S +G
Sbjct: 115 EAIAEFRNRNIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSG 162
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI
II), NYSGXRC, oxidoreductase, tetramer; 2.30A
{Corynebacterium glutamicum atcc 13032}
Length = 344
Score = 34.8 bits (78), Expect = 0.029
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38
+ ++A+ G GRIG + D+ +V I D
Sbjct: 3 LTLRIALFGAGRIGHVHAANI--AANPDLELVVIADPF 38
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion,
hydrolase; HET: NAD; 2.3A {Flavobacterium
meningosepticum} PDB: 2ixb_A*
Length = 444
Score = 34.2 bits (77), Expect = 0.039
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNS 39
++A G G+ + +RRDDV IVA D +
Sbjct: 22 RIAFIAVGLRGQTHVENM--ARRDDVEIVAFADPDP 55
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase family,
NAD-binding rossmann fold, structural genomics; HET:
NAD; 2.40A {Lactobacillus plantarum WCFS1}
Length = 346
Score = 34.0 bits (76), Expect = 0.047
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNS 39
+ AI G GR+G R V ++ V++VA L+S
Sbjct: 10 RAAIIGLGRLGERHARHLV-NKIQGVKLVAACALDS 44
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol
dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE;
1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A*
3nto_A* 3ntq_A* 3ntr_A*
Length = 344
Score = 34.0 bits (77), Expect = 0.050
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38
++ + G G IG+ + ++ IVA+ D+N
Sbjct: 4 RIGVIGTGAIGKEHINRIT-NKLSGAEIVAVTDVN 37
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genomics,
protein structure initiative, PSI; HET: NAD; 1.95A
{Listeria innocua}
Length = 359
Score = 33.7 bits (75), Expect = 0.066
Identities = 8/36 (22%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNS 39
++ I G+G +G + A S D++ + + D+ +
Sbjct: 7 QLVIVGYGGMGSYHVTLA--SAADNLEVHGVFDILA 40
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.1 bits (74), Expect = 0.083
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 104 EKASLHLSNGSQRVLV--SAPCKGVKKTI 130
EK +L S ++ SAP +K T+
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATM 46
Score = 28.4 bits (62), Expect = 2.3
Identities = 5/30 (16%), Positives = 16/30 (53%), Gaps = 9/30 (30%)
Query: 253 IDEINATMKYFAEGDLKNILGYVTLPLVSV 282
+ ++ A++K +A+ D + P +++
Sbjct: 22 LKKLQASLKLYAD-D--------SAPALAI 42
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase family,
NAD-binding rossmann fold, structural genomics; HET:
MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum
ms-1}
Length = 315
Score = 32.9 bits (73), Expect = 0.098
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38
++A+ G GR G+ +R + +V + N
Sbjct: 12 RLALIGAGRWGKNYIRTI--AGLPGAALVRLASSN 44
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2,
protein structure initiative; 2.04A {Thermotoga
maritima}
Length = 344
Score = 33.0 bits (74), Expect = 0.100
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38
M ++ + G GRIG DD + AI+D+
Sbjct: 1 MSLRIGVIGLGRIGTIHAENL--KMIDDAILYAISDVR 36
>1zh8_A Oxidoreductase; TM0312, structural genomics, joint center for
structural genomics, JCSG, protein structure
initiative, PSI; HET: MSE NAP; 2.50A {Thermotoga
maritima MSB8} SCOP: c.2.1.3 d.81.1.5
Length = 340
Score = 32.9 bits (73), Expect = 0.11
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38
++ I G G R + A+++ I A+
Sbjct: 20 RLGIVGCGIAARELHLPALKNLSHLFEITAVTSRT 54
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein
structure initiativ midwest center for structural
genomics; 2.50A {Bordetella bronchiseptica}
Length = 387
Score = 32.4 bits (73), Expect = 0.14
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38
+ I G G G ++ A+ D +IVA D N
Sbjct: 4 RFGICGLGFAGSVLMAPAM-RHHPDAQIVAACDPN 37
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; reductive methylation,
structural genomics, PSI 2, protein structure
initiative; HET: MLY; 2.00A {Streptococcus pneumoniae}
PDB: 2ho5_A
Length = 325
Score = 32.1 bits (71), Expect = 0.18
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38
K+ + G G I + AA + ++VAI
Sbjct: 3 KLGVIGTGAISHHFIEAA--HTSGEYQLVAIYSRK 35
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD;
1.90A {Archaeoglobus fulgidus}
Length = 236
Score = 31.9 bits (72), Expect = 0.18
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38
V + G+G IG+ + R+ I AI D+
Sbjct: 2 LVGLIGYGAIGKFLAEWL---ERNGFEIAAILDVR 33
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics,
putative oxidoreductase YVAA, PSI-2, protein structure
initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Length = 358
Score = 31.9 bits (70), Expect = 0.20
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNS 39
KV I G+G G + D+ +I I +
Sbjct: 7 KVGILGYGLSGSVFHGPLL-DVLDEYQISKIMTSRT 41
>3db2_A Putative NADPH-dependent oxidoreductase; ZP_01370612.1,
structural genomics, joint center for structural
genomics, JCSG; 1.70A {Desulfitobacterium hafniense
dcb-2}
Length = 354
Score = 31.8 bits (71), Expect = 0.24
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38
VA G GR + A ++ + +++V
Sbjct: 7 GVAAIGLGRWAYVMADAY--TKSEKLKLVTCYSRT 39
>1ydw_A AX110P-like protein; structural genomics, protein structure
initiative, center for eukaryotic structural genomics,
CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP:
c.2.1.3 d.81.1.5 PDB: 2q4e_A
Length = 362
Score = 31.8 bits (70), Expect = 0.24
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38
++ + G I R + RA + I + +
Sbjct: 8 RIGVMGCADIARKVSRAI--HLAPNATISGVASRS 40
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2,
NYSGXRC, 11136F, structural genomics, protein structure
initiative; 2.04A {Klebsiella pneumoniae subsp}
Length = 364
Score = 31.3 bits (69), Expect = 0.27
Identities = 4/35 (11%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38
+A+ G+G +G+ + + + + +
Sbjct: 9 NIALIGYGFVGKTFHAPLI-RSVPGLNLAFVASRD 42
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II,
dimeric dihydodiol dehydrogenase, structural genomics;
2.70A {Enterococcus faecalis}
Length = 330
Score = 31.4 bits (69), Expect = 0.28
Identities = 5/35 (14%), Positives = 9/35 (25%), Gaps = 2/35 (5%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38
+ I +I + ES + I
Sbjct: 7 RYGIMSTAQIVPRFVAGLRES--AQAEVRGIASRR 39
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural
genomics, center for structural genomics of infectious
diseases; HET: MSE; 2.75A {Yersinia pestis}
Length = 352
Score = 31.5 bits (70), Expect = 0.31
Identities = 4/35 (11%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38
KV + G+G + + + + ++ +
Sbjct: 9 KVGLLGYGYASKTFHAPLI-MGTPGLELAGVSSSD 42
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein
structure initiative; 2.00A {Streptococcus agalactiae
serogroup V}
Length = 329
Score = 31.4 bits (69), Expect = 0.32
Identities = 2/35 (5%), Positives = 11/35 (31%), Gaps = 2/35 (5%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38
+ + ++ + + +VA++
Sbjct: 7 RYGVVSTAKVAPRFIEGV--RLAGNGEVVAVSSRT 39
>1tlt_A Putative oxidoreductase (virulence factor MVIM homolog);
structural genomics, NYSGXRC, PSI, protein structure
initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3
d.81.1.5
Length = 319
Score = 31.0 bits (68), Expect = 0.42
Identities = 4/35 (11%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38
++ + G G I + + + D +
Sbjct: 7 RIGVVGLGGIAQKAWLPVL-AAASDWTLQGAWSPT 40
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor
ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A
{Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3
PDB: 1dap_A* 2dap_A* 3dap_A*
Length = 320
Score = 30.7 bits (69), Expect = 0.46
Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAI 34
+VAI G+G +GR + + +++ D+ +V I
Sbjct: 5 RVAIVGYGNLGRSVEKLI--AKQPDMDLVGI 33
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, PSI,
protein structure initiative, joint center for
structural genomics; HET: NAD; 1.90A {Thermotoga
maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Length = 253
Score = 30.5 bits (68), Expect = 0.48
Identities = 10/132 (7%), Positives = 30/132 (22%), Gaps = 25/132 (18%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKII 63
V I G G IG+ ++ + + D R ++ +
Sbjct: 14 TVLIIGMGNIGKKLVELG------NFEKIYAYD------------------RISKDIPGV 49
Query: 64 GDTIDVGLGP-IQVTSIRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAP 122
+ + + + ++ ++ ++ +R
Sbjct: 50 VRLDEFQVPSDVSTVVECASPEAVKEYSLQILKNPVNYIIISTSAFADEVFRERFFSELK 109
Query: 123 CKGVKKTIVYGV 134
+ G
Sbjct: 110 NSPARVFFPSGA 121
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC,
structural genomics, protein structure initiative;
1.93A {Bacteroides fragilis nctc 9343}
Length = 362
Score = 30.8 bits (68), Expect = 0.50
Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38
K + FG G+ + S + I + +
Sbjct: 7 KTGLAAFGMSGQVFHAPFI-STNPHFELYKIVERS 40
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 30.2 bits (67), Expect = 0.67
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 228 GSS-IRVPTPNVSMVDLKCVTSRDVNIDEINATMKYFAEG-DLKNILGYVTLPLVSVDFN 285
GS+ I VP S D++ + I+ I T K G DL I+ + +P ++
Sbjct: 530 GSTLIVVPFNQGSKQDVEAL------IEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELE 583
Query: 286 HTSYSSIFAADQTKVVSQNLLRVL 309
H S FA +++ N+LR++
Sbjct: 584 HIDSKSEFAH---RIMLTNILRMM 604
>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.00A {Escherichia coli k-12}
Length = 345
Score = 30.2 bits (66), Expect = 0.70
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNS 39
MV A GFG+ V +R+D + I ++
Sbjct: 1 MVINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHA 39
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein
structure initiative; HET: NAD; 2.30A {Chromobacterium
violaceum}
Length = 359
Score = 30.2 bits (67), Expect = 0.71
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38
KV + G G + L ++ + D+RIVA D +
Sbjct: 7 KVGLVGIGAQMQENLLPSL-LQMQDIRIVAACDSD 40
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein
translocation, periplasmic oxidoreductase, signal
peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas
mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A*
1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Length = 433
Score = 28.8 bits (63), Expect = 1.7
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38
AI G G+ + + RI A+ N
Sbjct: 85 GYAIVGLGKYALNQILPGF-AGCQHSRIEALVSGN 118
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle
pigment, heme, bilirubin, NADH; 1.20A {Rattus
norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A
2h63_A*
Length = 294
Score = 28.9 bits (64), Expect = 1.7
Identities = 8/36 (22%), Positives = 11/36 (30%), Gaps = 2/36 (5%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNS 39
V + G GR G LR + + S
Sbjct: 9 GVVVVGVGRAGSVRLRDL--KDPRSAAFLNLIGFVS 42
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP,
oxidoreductase, proline biosynthesis; HET: NAD; 1.95A
{Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*
Length = 322
Score = 28.7 bits (63), Expect = 2.2
Identities = 29/217 (13%), Positives = 58/217 (26%), Gaps = 4/217 (1%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVH-GRFPGEVKI 62
V G G++ + + + + + + LR V E
Sbjct: 24 SVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQ 83
Query: 63 IGDTIDVGLGPIQVTSIRDPQDLPWGDVDVAMECT-GFFVTQEKASLHLSNGSQRVLVSA 121
D + + + P + I D D + + C G ++ + L + RV+
Sbjct: 84 HSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCM 143
Query: 122 PCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCL--VPVVHVLDKMFGIEKGYMTTVHS 179
V V + + + + + V ++
Sbjct: 144 TNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYA 203
Query: 180 YTGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVE 216
+T + D G R A GAAK +
Sbjct: 204 FTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLL 240
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding;
HET: 1PE 12P; 2.15A {Synthetic}
Length = 211
Score = 28.6 bits (63), Expect = 2.2
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 1 MVCKVAINGFGRIG----RCILRAAVESRRDDVRIVAINDLNSIET 42
V + A + G IG R + E+ R VA+N L + ++
Sbjct: 158 WVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHKS 203
>3kv5_D JMJC domain-containing histone demethylation protein 1D;
epigenetics, histone CODE, jumonji lysine demethylase,
metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo
sapiens} PDB: 3kv6_A*
Length = 488
Score = 28.4 bits (63), Expect = 2.2
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 22/103 (21%)
Query: 225 KLDGSSIRVPTPNVSMVDLKCVTSRDVNIDEINA--------TMKYFA---EGDLKNILG 273
KLD +R+P+P S++D++ D ID I+ T+ + + +
Sbjct: 164 KLDDLGLRLPSPTFSVMDVERYVGGDKVIDVIDVARQADSKMTLHNYVKYFMNPNRPKVL 223
Query: 274 YVTLPLVSVDFNHTSYSSIFAADQTKVVSQNLLRVLVWYDNEW 316
V +S++F+ T S V ++ + L W +N W
Sbjct: 224 NV----ISLEFSDTKMSE-------LVEVPDIAKKLSWVENYW 255
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding;
1.80A {Synthetic}
Length = 201
Score = 28.2 bits (62), Expect = 2.4
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 1 MVCKVAINGFGRIG----RCILRAAVESRRDDVRIVAINDLNSIETM 43
V + A + G IG R + E+ R VA+N L + +++
Sbjct: 153 WVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHKSL 199
>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine
biosynthesis, NADP+ oxidoreductase (phosphorylating),
domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3
d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A
1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A*
1pu2_A* 1q2x_A*
Length = 367
Score = 28.5 bits (62), Expect = 2.5
Identities = 18/127 (14%), Positives = 37/127 (29%), Gaps = 10/127 (7%)
Query: 64 GDTIDVGLGPIQVTSIRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAP- 122
G + D + L +D+ + C G T E +G Q + A
Sbjct: 42 QAAPSFGGTTGTLQDAFDLEALK--ALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAAS 99
Query: 123 ----CKGVKKTIVYGVNHQ---SLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMT 175
+ LN + +CT + ++ + L ++ +
Sbjct: 100 SLRMKDDAIIILDPVNQDVITDGLNNGIRTFVGGNCTVSLMLMSLGGLFANDLVDWVSVA 159
Query: 176 TVHSYTG 182
T + +G
Sbjct: 160 TYQAASG 166
>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine
dehydrogenase, structural genomics, joint center for
structural genomics; 2.20A {Archaeoglobus fulgidus}
Length = 327
Score = 28.3 bits (62), Expect = 2.8
Identities = 28/174 (16%), Positives = 57/174 (32%), Gaps = 22/174 (12%)
Query: 4 KVAINGFGRIGRCILR------AAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFP 57
K+AI GFG +G+ + +E + ++ A+ D S + L R
Sbjct: 4 KIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRET 63
Query: 58 GEVKIIGDTIDVGLGPIQVTSIRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRV 117
G ++ I+V ++ + VD ++ H+ ++
Sbjct: 64 GMLRDDAKAIEV----VRSADYDVLIEASVTRVDGGEGVNYIREALKRGK-HVVTSNKGP 118
Query: 118 LVSAPCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEK 171
LV+ SL + + V T +PVV + + + +
Sbjct: 119 LVA-----------EFHGLMSLAERNGVRLMYEATVGGAMPVVKLAKRYLALCE 161
>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer,
oxidoreductase; HET: NAD; 2.30A {Saccharomyces
cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A*
1q7g_A*
Length = 358
Score = 28.0 bits (62), Expect = 3.1
Identities = 13/98 (13%), Positives = 26/98 (26%), Gaps = 9/98 (9%)
Query: 2 VCKVAINGFGRIGRCILRAAVESRRD-DVRIVAINDLNSIETMAHLLRYDSVHGRFPGEV 60
V VA+ G G +G L + + +V + + L+ D +
Sbjct: 4 VVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERS-----LISKDFSPLNVGSDW 58
Query: 61 KIIGDTIDVGLGPIQVTSIRDPQDLPWGDVDVAMECTG 98
K P+ + ++ T
Sbjct: 59 KAALAASTTKTLPLDDLIAHLKTSP---KPVILVDNTS 93
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.14A {Thermotoga maritima}
Length = 337
Score = 28.0 bits (60), Expect = 3.5
Identities = 6/36 (16%), Positives = 10/36 (27%), Gaps = 2/36 (5%)
Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAIND 36
M K+ + G R L + +A
Sbjct: 1 MSLKICVIGSSGHFRYALEGL--DEECSITGIAPGV 34
>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics,
PSI-2, protein structure initiative; HET: NAD; 2.50A
{Legionella pneumophila subsp}
Length = 480
Score = 27.6 bits (61), Expect = 4.5
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38
+ I GFG +G+ ++ E V I
Sbjct: 15 RFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAE 49
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2,
11131, NYSGXRC, structural genomics, protein structure
initiative; 2.04A {Pseudomonas syringae PV}
Length = 398
Score = 27.5 bits (59), Expect = 4.5
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDD--VRIVAINDLN 38
+ A+ G G + + RD+ V + D++
Sbjct: 14 RWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDID 50
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 27.5 bits (60), Expect = 4.7
Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRI-VAINDLNSIETMAHLLRYDSVH 53
M V + G G + + ++ + DD+ + VA L + + +A ++
Sbjct: 22 MGKNVLLLGSGFVAQPVIDTL--AANDDINVTVACRTLANAQALAKPSGSKAIS 73
>1uvq_B HLA class II histocompatibility antigen; immunology, MHC class II,
diabetes, narcolepsy, autoimmune disease, structural
proteomics in europe, spine, structural genomics; HET:
NAG FUC BMA; 1.8A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1
PDB: 1jk8_B* 2nna_B 1s9v_B 2iad_B 1muj_B* 1d9k_D*
1iak_B* 1jl4_B 1f3j_B* 2pxy_D 1k2d_B* 1u3h_D 2z31_D
1aqd_B 1klu_B 1jwm_B 1jws_B 1hxy_B 1klg_B 1jwu_B ...
Length = 198
Score = 27.4 bits (60), Expect = 4.7
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 100 FVTQEKASLHLSNGSQRV 117
FV Q K + +NG++RV
Sbjct: 5 FVFQFKGMCYFTNGTERV 22
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase,
rossmann-fold, sugar metabolism,
1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A
{Ensifer adhaerens}
Length = 332
Score = 27.1 bits (58), Expect = 5.4
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLN 38
+ + G I R + A R +V++ +
Sbjct: 2 RWGLIGASTIAREWVIGA--IRATGGEVVSMMSTS 34
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker,
ancillary protein KEFF; potassium channel regulation,
domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia
coli} PDB: 3eyw_A* 3l9x_A*
Length = 413
Score = 27.1 bits (60), Expect = 6.1
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAI-NDLNSIETMAHLLRYDSVHG 54
+V I GFGR G+ R + S V++V + +D + IET+ +G
Sbjct: 6 RVIIAGFGRFGQITGRLLLSS---GVKMVVLDHDPDHIETLRKFG-MKVFYG 53
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural genomics, PSI-2-2, protein
structure initiative; HET: AMP; 3.45A {Thermotoga
maritima}
Length = 218
Score = 27.0 bits (59), Expect = 6.1
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAI-NDLNSIETMAHLLRYDSVHG 54
KV I G + R+ + +V I D E A L+ +HG
Sbjct: 2 KVIIIGGETTAYYLARSMLSR---KYGVVIINKDRELCEEFAKKLKATIIHG 50
>1fne_B Protein (MHC class II I-EK, beta chain); histocompatibility
antigen, peptide, immune system; HET: NAG; 1.90A {Mus
musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1iea_B* 1i3r_B*
1fng_B* 1ktd_B* 1ieb_B* 1kt2_B*
Length = 224
Score = 26.5 bits (58), Expect = 8.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 99 FFVTQEKASLHLSNGSQRV 117
+F+ K+ H NG+QRV
Sbjct: 32 WFLEYCKSECHFYNGTQRV 50
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein
structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA
family oxidoreductase; 2.65A {Vibrio cholerae} SCOP:
c.2.1.3 d.81.1.5
Length = 323
Score = 26.5 bits (57), Expect = 8.8
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAIND 36
M K+A+ G G I + + ++ D+ +V
Sbjct: 1 MSLKIAMIGLGDIAQKAYLPVL-AQWPDIELVLCTR 35
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta,
oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus}
PDB: 3ggg_D* 3ggp_A*
Length = 314
Score = 26.4 bits (57), Expect = 9.0
Identities = 25/189 (13%), Positives = 56/189 (29%), Gaps = 5/189 (2%)
Query: 4 KVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEVKII 63
V I G G +G ++ S +I + + E+++ + + K+
Sbjct: 35 NVLIVGVGFMGGSFAKSLRRSGF-KGKIYGYD--INPESISKAVDLGIIDEGTTSIAKVE 91
Query: 64 GDTIDVGLGPIQVTSIRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPC 123
+ D + V + R+ + T + K L N + V
Sbjct: 92 DFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVG--G 149
Query: 124 KGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSYTGD 183
+ T GV + N + + T + ++ +++ G + + D
Sbjct: 150 HPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSPELHD 209
Query: 184 QHVLDAGHS 192
H
Sbjct: 210 YVFGVVSHL 218
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.319 0.134 0.393
Gapped
Lambda K H
0.267 0.0483 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,751,120
Number of extensions: 122327
Number of successful extensions: 485
Number of sequences better than 10.0: 1
Number of HSP's gapped: 390
Number of HSP's successfully gapped: 91
Length of query: 333
Length of database: 5,693,230
Length adjustment: 93
Effective length of query: 240
Effective length of database: 3,438,538
Effective search space: 825249120
Effective search space used: 825249120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.3 bits)