BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780654|ref|YP_003065067.1| Glyceraldehyde 3-Phosphate Dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] (333 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780654|ref|YP_003065067.1| Glyceraldehyde 3-Phosphate Dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 333 Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/333 (100%), Positives = 333/333 (100%) Query: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEV 60 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEV Sbjct: 1 MVCKVAINGFGRIGRCILRAAVESRRDDVRIVAINDLNSIETMAHLLRYDSVHGRFPGEV 60 Query: 61 KIIGDTIDVGLGPIQVTSIRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVS 120 KIIGDTIDVGLGPIQVTSIRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVS Sbjct: 61 KIIGDTIDVGLGPIQVTSIRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVS 120 Query: 121 APCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSY 180 APCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSY Sbjct: 121 APCKGVKKTIVYGVNHQSLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSY 180 Query: 181 TGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPNVSM 240 TGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPNVSM Sbjct: 181 TGDQHVLDAGHSDLYRSRAAAISMVPTSTGAAKAVELVLPNLKGKLDGSSIRVPTPNVSM 240 Query: 241 VDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQTKV 300 VDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQTKV Sbjct: 241 VDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQTKV 300 Query: 301 VSQNLLRVLVWYDNEWGFSNRMLDTASAMANLS 333 VSQNLLRVLVWYDNEWGFSNRMLDTASAMANLS Sbjct: 301 VSQNLLRVLVWYDNEWGFSNRMLDTASAMANLS 333 >gi|254780307|ref|YP_003064720.1| aspartate-semialdehyde dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 335 Score = 26.9 bits (58), Expect = 0.52, Method: Compositional matrix adjust. Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 4/112 (3%) Query: 75 QVTSIRDPQDLPWGDVDVAMECTGFFVTQEKASLHLSNGSQRVLVSAPCKGVKKT--IVY 132 + ++D + + D D+ + G V+ + + +NG + S+ + IV Sbjct: 50 ETIDVQDVKSYDFSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVP 109 Query: 133 GVNHQ--SLNKEDKVVSNASCTTNCLVPVVHVLDKMFGIEKGYMTTVHSYTG 182 VN Q SL +++N +C+T LV + L + I++ +TT S +G Sbjct: 110 EVNPQTISLASRKNIIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSG 161 >gi|254781208|ref|YP_003065621.1| hypothetical protein CLIBASIA_05575 [Candidatus Liberibacter asiaticus str. psy62] Length = 578 Score = 25.4 bits (54), Expect = 1.5, Method: Compositional matrix adjust. Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 28/107 (26%) Query: 238 VSMVDLKCVTSRDVNIDEINATMKYFAEGDLKNILGYVTLPLVSVDFNHTSYSSIFAADQ 297 +++++L TSR+ A Y+ GD+K+ VS D SI A Q Sbjct: 265 ITVLNLSSKTSRE---SASGAVAPYYVWGDIKD---------VSKDGR-----SISVAPQ 307 Query: 298 TKVVSQNLLRVLVWYDNEWG-----------FSNRMLDTASAMANLS 333 ++ + Q + V+ W+ + WG +NR+L + S LS Sbjct: 308 SQTLFQAGVSVVSWFMSAWGEQEGYPSHVTFHNNRLLFSGSKGDELS 354 >gi|254781148|ref|YP_003065561.1| hypothetical protein CLIBASIA_05275 [Candidatus Liberibacter asiaticus str. psy62] Length = 69 Score = 24.6 bits (52), Expect = 2.1, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 17/27 (62%) Query: 171 KGYMTTVHSYTGDQHVLDAGHSDLYRS 197 KG + + S+ QH +D HS+++R+ Sbjct: 34 KGNLQPIISFLDAQHFIDPIHSEVFRA 60 >gi|254780635|ref|YP_003065048.1| hypothetical protein CLIBASIA_02610 [Candidatus Liberibacter asiaticus str. psy62] Length = 412 Score = 24.6 bits (52), Expect = 2.2, Method: Compositional matrix adjust. Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 1/22 (4%) Query: 77 TSIRDPQDLPWGDVDVAMECTG 98 T++R+P + P+ D D+ CTG Sbjct: 186 TNVREPGNRPYTDFDIG-NCTG 206 >gi|254780267|ref|YP_003064680.1| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 171 Score = 23.1 bits (48), Expect = 6.7, Method: Compositional matrix adjust. Identities = 9/27 (33%), Positives = 17/27 (62%) Query: 72 GPIQVTSIRDPQDLPWGDVDVAMECTG 98 G +Q +++D Q + +GD + +E TG Sbjct: 142 GKVQDINVKDGQSVEYGDALLVLEKTG 168 >gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 257 Score = 22.7 bits (47), Expect = 8.3, Method: Compositional matrix adjust. Identities = 8/35 (22%), Positives = 20/35 (57%) Query: 115 QRVLVSAPCKGVKKTIVYGVNHQSLNKEDKVVSNA 149 +RV+++ P K T++ +NH ++ +++ N Sbjct: 44 ERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIING 78 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.134 0.393 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 203,006 Number of Sequences: 1233 Number of extensions: 8191 Number of successful extensions: 30 Number of sequences better than 100.0: 10 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 10 length of query: 333 length of database: 328,796 effective HSP length: 74 effective length of query: 259 effective length of database: 237,554 effective search space: 61526486 effective search space used: 61526486 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 38 (19.2 bits)