HHsearch alignment for GI: 254780655 and conserved domain: COG3959
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism].
Probab=100.00 E-value=0 Score=504.29 Aligned_cols=237 Identities=38% Similarity=0.622 Sum_probs=226.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHC
Q ss_conf 88889999999999999999997388976431368999999843325445778988788779985652018999999970
Q gi|254780655|r 14 KYDDDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYALLYLL 93 (673)
Q Consensus 14 ~~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~~~l~ 93 (673)
T Consensus 5 ~~~~~L~~~A~~iRr~~v~m~~~~~~GH~G~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLSKGHaa~AlYa~Lae~ 84 (243)
T COG3959 5 LSVDELERIAREIRRNIVRMLANAGSGHVGGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILSKGHAAPALYATLAEK 84 (243)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHC
T ss_conf 22799999999999999998632678875762109999999999872668788877777769983664138999999981
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf 76889988986400038879889888899873068886314799999999999985342688767845999843621143
Q gi|254780655|r 94 GYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLME 173 (673)
Q Consensus 94 G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~e 173 (673)
T Consensus 85 G~--~p~eeL~~~~~~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~-------~~~VyvilGDGEl~E 155 (243)
T COG3959 85 GY--FPEEELETFRRIGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGS-------PYRVYVILGDGELDE 155 (243)
T ss_pred CC--CCHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHCCC-------CCEEEEEECCCCCCC
T ss_conf 89--888999975168985889976578986562687655661078888888765289-------844999955754366
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC-CCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCC-CCHH
Q ss_conf 44557887652202233069996276322322355678-217998864144444444440678888888751102-2102
Q gi|254780655|r 174 GISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADS-TDQYARFRASGWNTLSVNGHDHHAITSTLRKAQLSD-KPTM 251 (673)
Q Consensus 174 G~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~-~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak~~~-kP~~ 251 (673)
T Consensus 156 G~~WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~~~rP~~ 235 (243)
T COG3959 156 GQVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGSKGRPTV 235 (243)
T ss_pred CCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHCCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEE
T ss_conf 52799999998705376799994587424776543268520078888438068997584799999999841135899869
Q ss_pred HHHCCCCC
Q ss_conf 22013345
Q gi|254780655|r 252 IACETVIG 259 (673)
Q Consensus 252 I~~~T~kG 259 (673)
T Consensus 236 IIa~Tvkg 243 (243)
T COG3959 236 IIAKTVKG 243 (243)
T ss_pred EEEECCCC
T ss_conf 99735659