HHsearch alignment for GI: 254780655 and conserved domain: PRK12571
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.
Probab=100.00 E-value=0 Score=997.58 Aligned_cols=558 Identities=23% Similarity=0.355 Sum_probs=477.6
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECC
Q ss_conf 99887676433468888999999999999999999738897643136899999984332544577898878877998565
Q gi|254780655|r 1 MGHPVGGRNVVLMKYDDDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAG 80 (673)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~G 80 (673)
T Consensus 12 i~~p~dlk~l~~----~~L~~la~~iR~l~id~v~~-~sGHpg~~lG~ael~~aL~~---~f~~--p----RDRfVlS~G 77 (642)
T PRK12571 12 INGPADLRALSD----AELEQLADEIRAEVISAVSE-TGGHLGSSLGVVELTVALHA---VFNT--P----RDKLVWDVG 77 (642)
T ss_pred CCCHHHHHHCCH----HHHHHHHHHHHHHHHHHHHH-CCCCCCCCHHHHHHHHHHHH---HCCC--C----CCCEEEECC
T ss_conf 699899872999----99999999999999999976-58978866679999999987---2499--9----887798485
Q ss_pred CCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 20189999999707688998898640003887988988889987306888631479999999999998534268876784
Q gi|254780655|r 81 HGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDH 160 (673)
Q Consensus 81 H~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~ 160 (673)
T Consensus 78 H~S---Y~~l~LtG~~----d~lk~fRq~gs-~tGhp~~~et~~~~~~~G~~g~gls~AvGmA~A~~l~~~-------d~ 142 (642)
T PRK12571 78 HQC---YPHKLLTGRR----DQFRTLRQKGG-LSGFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQP-------DG 142 (642)
T ss_pred HHH---HHHHHHHCCH----HHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-------CC
T ss_conf 688---9999986888----78751760699-999786998898987877653588999999999985699-------97
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC------------------CCH--------
Q ss_conf 599984362114344557887652202233069996276322322355678------------------217--------
Q gi|254780655|r 161 YTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADS------------------TDQ-------- 214 (673)
Q Consensus 161 ~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~------------------~~~-------- 214 (673)
T Consensus 143 ~v~~i~GDG~LmEGvs~EA~slAGhl~-~kLIvi~DDN~iSIdg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (642)
T PRK12571 143 DVVAVIGDGSLTAGMAYEALNNAGAAD-RRLIVILNDNEMSIAPPVGALANYLSTLRSSDPFATLRAIAKGVEERLPGPL 221 (642)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHCCCC-CCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHH
T ss_conf 089997571444058999998514036-8769999438744277731788999998834408999999999986064468
Q ss_pred -----------------HHHHHHCCCCCCC-CCCCCHHHHHHHHHHHHH-CCCCHHHHHCCCCCCCCCCCCCCC-CCCCC
Q ss_conf -----------------9988641444444-444406788888887511-022102220133455570004771-10334
Q gi|254780655|r 215 -----------------YARFRASGWNTLS-VNGHDHHAITSTLRKAQL-SDKPTMIACETVIGFGSPNRAGTN-KVHGS 274 (673)
Q Consensus 215 -----------------~~~~~a~Gw~~~~-vdG~d~~~i~~a~~~ak~-~~kP~~I~~~T~kG~G~~~~e~~~-~~HG~ 274 (673)
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~e~~g~~~~~p~dghd~~~~~~~l~~ak~~~~~P~~i~~~t~kg~g~~~ae~~~~~~h~~ 301 (642)
T PRK12571 222 RDGARRARELVTGMPGGGTLFEELGFTYVGPIDGHDMEALLSVLRAARARATGPVLVHVVTEKGKGYAPAEDEADKYHAV 301 (642)
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCHHHCCHHHHHHH
T ss_conf 99999999875337876506787387766787877899999999999972599857520147633775311397764330
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHC
Q ss_conf 37223321256634877785438978999999754333566887642467631111100230011107763023555420
Q gi|254780655|r 275 ALGQEEIKATRKALNWDLDPFFIPDDIMKKWRLAGLRSSQTRADWQERLSSMKSSIRKEFERRFSDALPDCFDNAFINLK 354 (673)
Q Consensus 275 ~l~~ee~~~~~k~lg~~~~~f~ip~~v~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~e~~~~~~~~~p~~~~~~~~~~~ 354 (673)
T Consensus 302 ~------------------~~~~~-------------------------------~---------~-~~~~--------- 313 (642)
T PRK12571 302 G------------------KFDVA-------------------------------T---------G-LQKK--------- 313 (642)
T ss_pred C------------------CCCCC-------------------------------C---------C-CCCC---------
T ss_conf 5------------------43301-------------------------------3---------5-6444---------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 00001355431013467888998865543322034555674000266634454320010032576200235678799872
Q gi|254780655|r 355 KKFEHSKPMIATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAMAAAMNGIALH 434 (673)
Q Consensus 355 ~~~~~~~~~vatr~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~p~r~i~~GIaE~~~~~~aaGla~~ 434 (673)
T Consensus 314 ----~~~~~~~~~~~~g~~l~~la~~~~~lv~~sadl~~stgl~------~f~~~~p~R~~~~GIrE~~m~a~a~GlA-~ 382 (642)
T PRK12571 314 ----SKPNAPSYTSVFGDELVKEAEEDSDIVAITAAMPSGTGLD------KLQKRFPNRVFDVGIAEQHAVTFAAGLA-A 382 (642)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCC------CHHCCCCCCCCCCCHHHHHHHHHHHHHH-H
T ss_conf ----6787622999999999999974110102000367777761------0101588655552455678999963476-4
Q ss_pred CCCCCEECCCHHHHHHHHHHHHH-HHHHHCCCEEECCCCCCCCCCCCCHHHHCCCCCHHHHHCCCCEEEECCHHHHHHHH
Q ss_conf 88762200100355530012454-11110000130245433333333101000222101110122112112012457777
Q gi|254780655|r 435 KGLAPYSGTFMVFSDYSRPAIRL-ASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECW 513 (673)
Q Consensus 435 ~g~~p~~~tf~~F~~~~~~~ir~-~al~~~~v~~v~th~gi~~G~DGpTHq~iedia~lr~iPnl~v~~P~d~~E~~~~~ 513 (673)
T Consensus 383 ~G~~P~~~tf~~F~~ra~~qi~~~~al~~lpv~~v~~~~Gl-vGeDGpTHq~iedla~lR~iPnl~V~~PaD~~E~~~a~ 461 (642)
T PRK12571 383 AGLKPFCAIYSTFLQRGYDQVLHDVALQKLPVRFVIDRAGL-VGADGATHAGMFDMAFLTCLPNLRVMAPADEAELRHML 461 (642)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEECCCC-CCCCCCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHH
T ss_conf 69962899967445543788763255159866999966732-47998764243778875479981899129999999999
Q ss_pred HHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 65202567834999524444334566553221234737998569972999952688999999999999739943998574
Q gi|254780655|r 514 QVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVP 593 (673)
Q Consensus 514 ~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~ 593 (673)
T Consensus 462 ~~al~~~~gP~~i~l~R~~~~~~~~~-~~~~~~~~g~~~~~~~g~~dv~lia~Gs~v~~Al~Aa~~L~~~Gi~~~Vv~~~ 540 (642)
T PRK12571 462 RTAVAHDDGPIAVRYPRGEGVGVEIP-AVGRVLGIGKGRVPREGRPDVAILSVGAHLHECLEAAELLEAEGISVTVADAR 540 (642)
T ss_pred HHHHHCCCCCEEEEECCCCCCCCCCC-CCCCCCCCCEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 99986689988999527878887766-42111356438994279999899986099999999999998669986998167
Q ss_pred CCCHHCCCCHHHHHHHCCCCCEEEEECCCCHHHHHHH----HCCC--------CCEEEE-CCCCCCCCHHHHHHHCCCCH
Q ss_conf 6581000868899964367977999728602789998----4579--------818983-57767688889999809998
Q gi|254780655|r 594 CFELFFEQSDSYRAQIIGSSPIKIAIEAGLRQGWDAF----IGSD--------GSFIGM-QGFGASGSCDLLYQHFGINA 660 (673)
Q Consensus 594 s~k~ld~~~~~~~~~il~~~~~~vtiE~g~~~g~~~~----~~~~--------~~~igi-d~Fg~sg~~~el~~~~Gld~ 660 (673)
T Consensus 541 ~~kp~D~---~~~~~~~~~~~~vv~~E~~~~gG~g~~v~~~~~~~g~~~~~~~~~~~Gi~d~Fg~sa~~~~l~~~~Glt~ 617 (642)
T PRK12571 541 FVKPLDE---ALIAQLARRHRVLVTVEDGAMGGFGAHVLHHLADAGLLDGGLKLRTLGLPDRFIDHASPEEMYAEAGLTA 617 (642)
T ss_pred CCCCCCH---HHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCH
T ss_conf 3787799---9999997009889999078512389999999997498778973899835887678499999999979399
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999999848
Q gi|254780655|r 661 IAIVDMVERKLS 672 (673)
Q Consensus 661 ~~I~~~i~~~L~ 672 (673)
T Consensus 618 e~Iv~~i~~~L~ 629 (642)
T PRK12571 618 PDIAAQVTGALA 629 (642)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999986