>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.

Probab=100.00 E-value=0 Score=515.29 Aligned_cols=629 Identities=21% Similarity=0.257 Sum_probs=469.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHC------CCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHH Q ss_conf 8999999999999999999738------8976431368999999843325445778988788779985652018999999 Q gi|254780655|r 17 DDYKKMADAIRFLSMDAIENVN------SGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYALL 90 (673) Q Consensus 17 ~~l~~~a~~iR~~~~~~v~~a~------~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~~ 90 (673) T Consensus 73 ~lE~rir~~iRWNA~aMV~rAnk~~~~lGGHIstyaSaAtLyEVGFNHFfr~~~-~~--~~GD-lv~fQGHssPGiYARA 148 (889) T TIGR03186 73 QLEERLAAILRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRAAG-DA--SGGD-LVYFQPHSAPGVYARA 148 (889) T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCC-CC--CCCC-EEEECCCCCCHHHHHH T ss_conf 999999999988999999970378898674187688789999741441664799-99--9988-7987588871688999 Q ss_pred HHCCCCCCCHHHHHHHHCC--CCCCCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE Q ss_conf 9707688998898640003--887988--988889987306888631479999999999998534268876784599984 Q gi|254780655|r 91 YLLGYQDVTIEDIKNFRTI--GSKTAG--HPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLV 166 (673) Q Consensus 91 ~l~G~~~~~~e~l~~~r~~--~s~~~G--hpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~ii 166 (673) T Consensus 149 fLEGR--Lse~qL~nFRqE~~g~GLsSYPHP-~lMPdfWqFPTVSMGLGPi~aIYQArf~kYL~~Rgl~~~~~~kVWafl 225 (889) T TIGR03186 149 FLEGF--LSDAQLAHYRQEIAGPGLCSYPHP-WLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFF 225 (889) T ss_pred HHCCC--CCHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE T ss_conf 87067--899999766653059998999986-668654677752666348889999999999986699876788289993 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC--CCCHHHHHHHCCCCCCCC---------------- Q ss_conf 36211434455788765220223306999627632232235567--821799886414444444---------------- Q gi|254780655|r 167 GDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLAD--STDQYARFRASGWNTLSV---------------- 228 (673) Q Consensus 167 GDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~--~~~~~~~~~a~Gw~~~~v---------------- 228 (673) T Consensus 226 GDGEmDEPEs~gai~lA~rE~LDNLifVvNCNLQRLDGPVrGNgkIiqELE~~FrGAGWnVIKviWG~~WD~Ll~~D~~G 305 (889) T TIGR03186 226 GDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFARDATG 305 (889) T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHCCCC T ss_conf 58766871333332156660577769999567654688846852888998877355885269986678578998528856 Q ss_pred -----------------------------------------------------CCCCHHHHHHHHHHHHH-CCCCHHHHH Q ss_conf -----------------------------------------------------44406788888887511-022102220 Q gi|254780655|r 229 -----------------------------------------------------NGHDHHAITSTLRKAQL-SDKPTMIAC 254 (673) Q Consensus 229 -----------------------------------------------------dG~d~~~i~~a~~~ak~-~~kP~~I~~ 254 (673) T Consensus 306 ~L~~rm~e~vDG~yQ~~~a~~Gay~Re~fFg~~pel~~lv~~~sD~~i~~L~RGGHDp~KvyAAy~~A~~hkG~PTVILa 385 (889) T TIGR03186 306 ALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVRHEGRPTVILA 385 (889) T ss_pred HHHHHHHHCCCHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEE T ss_conf 79999885447287876346789999998089989999985089999986015799829999999999857899859984 Q ss_pred CCCCCCCC-CCCCCCCCCCC-CCCCHHHHHHHHHHCCCCCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 13345557-00047711033-43722332125663487778-------54389789999997543335668876424676 Q gi|254780655|r 255 ETVIGFGS-PNRAGTNKVHG-SALGQEEIKATRKALNWDLD-------PFFIPDDIMKKWRLAGLRSSQTRADWQERLSS 325 (673) Q Consensus 255 ~T~kG~G~-~~~e~~~~~HG-~~l~~ee~~~~~k~lg~~~~-------~f~ip~~v~~~~~~~~~~~~~~~~~w~~~~~~ 325 (673) T Consensus 386 kTvKGyGlG~~~eg~N~tHQ~KKl~~~~L~~fRdrf~iPisD~~le~~pfy~P~~dS~E~~Yl~-----------~rR~~ 454 (889) T TIGR03186 386 KTMKGFGMGAIGQGRMTTHQQKKLDVEALLAFRDRFRLPLSDADVEQLKFYKPDEDSAEMRYLH-----------ARRAA 454 (889) T ss_pred ECEEECCCCHHHHCCCHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCHHHHHHH-----------HHHHH T ss_conf 2324356461441113443244599999999999849998845650389989999988999999-----------99997 Q ss_pred HHHHHHHCCCCHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH---HHHHHCCCCC---------CC Q ss_conf 31111100230011107763023555420000013554310134678889988655---4332203455---------56 Q gi|254780655|r 326 MKSSIRKEFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSELVLEVVNDCL---PELIGGSADL---------TG 393 (673) Q Consensus 326 ~~~~~~~e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vatr~a~g~~l~~i~~~~---p~iv~~sADl---------~~ 393 (673) T Consensus 455 LGG~lP~R~~~-~~~~l~~P~l~~f~~~~~--~s~~re~STTMafVRlL~~Llkdk~iG~riVPIvpDEARTFGMe~lFr 531 (889) T TIGR03186 455 LGGYLPRRRTA-ATHALAVPALPSWGRFAL--DAEGKEMSTTMAIVRMLGALLKDAELGPRIVPIVADEARTFGMANLFR 531 (889) T ss_pred CCCCCCCCCCC-CCCCCCCCCHHHHHHHHC--CCCCCEEEHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHH T ss_conf 49989865767-887889978689999854--788852327999999999996082657746654467410357476664 Q ss_pred CCCCCCCCCCCCC----------CCCCHHHCCCCCCCHHHHHH--HHHHHHH--CC-CCCCEECCCHHH-HHHHHHHHHH Q ss_conf 7400026663445----------43200100325762002356--7879987--28-876220010035-5530012454 Q gi|254780655|r 394 SNGTKTSQMKAIS----------KSDFSGRYLHYGVREHAMAA--AMNGIAL--HK-GLAPYSGTFMVF-SDYSRPAIRL 457 (673) Q Consensus 394 St~~~~~~~~~~~----------~~~~p~r~i~~GIaE~~~~~--~aaGla~--~~-g~~p~~~tf~~F-~~~~~~~ir~ 457 (673) T Consensus 532 q~GIYs~~GQ~Y~PvD~~~l~~YkE~~~GQILeEGInEAGa~sswiAAaTsYsth~~pmIPfYIfYSMFGFQRvGDl~WA 611 (889) T TIGR03186 532 QVGIYSPLGQRYEPEDLGSMLYYREDTDGQILEEGISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFGFQRIGDLIWA 611 (889) T ss_pred HCCCCCCCCCCCCCCCHHHHHEEEECCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCCHHHH T ss_conf 31532789863675433244101336887523304023302899999875110389521489999987513212533776 Q ss_pred HHHHHCCCEEECCCCCCCC--C-----CCCCHHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCC-----CCCCEE Q ss_conf 1111000013024543333--3-----333101000222101110122112112012457777652025-----678349 Q gi|254780655|r 458 ASLMGIRVIHVLTHDSIGL--G-----EDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKE-----KNRPSV 525 (673) Q Consensus 458 ~al~~~~v~~v~th~gi~~--G-----~DGpTHq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~-----~~gP~~ 525 (673) T Consensus 612 AgD~raRGFLiGaTAGRTTLnGEGLQHqDGHSh------llAstiPnc~sYDPafaYElAvIi~dGl~RMy~~~edvfYY 685 (889) T TIGR03186 612 AADQRARGFLIGATSGKTTLGGEGLQHQDGTSH------LAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYY 685 (889) T ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHH------HHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 302103653787404544235553211662078------88653787501065220022798999999998668874787 Q ss_pred EEECCCCCCCCCCCCCC----CCCCCCCCEEEEEC--CCCCEEEEECCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCHH Q ss_conf 99524444334566553----22123473799856--997299995268899999999999973-994399857465810 Q gi|254780655|r 526 LSLSRQNLPFLRTQYES----NNLCALGAYDYIST--PNAQVTIFSSGSELKIAVEACEILSSR-NISTRVVSVPCFELF 598 (673) Q Consensus 526 ir~~R~~~p~~~~~~~~----~~~~~~G~~~~~~~--~~~dv~iia~G~~v~~al~aa~~L~~~-Gi~~~Vi~~~s~k~l 598 (673) T Consensus 686 iTv~NEny~~P~mP~~~~~~v~~gI~kG~Y~~~~~~~~~~~vqLlgSG~il~ev~~Aa~iL~~d~gV~adVWSvTS~~EL 765 (889) T TIGR03186 686 LTVTNENYAQPSLPEDRLDAVRRGILKGMYPLDPAALAAARVQLLGSGAILGEVQAAARLLRDDWGIDAAVWSVTSFTEL 765 (889) T ss_pred EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHH T ss_conf 63035455687899982667860245643203545678963799915799999999999998720996417825888999 Q ss_pred CCC----------------CHHHHHHHCCCC-CEEEEECCC---CHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHCCC Q ss_conf 008----------------688999643679-779997286---027899984579818983577676888899998099 Q gi|254780655|r 599 FEQ----------------SDSYRAQIIGSS-PIKIAIEAG---LRQGWDAFIGSDGSFIGMQGFGASGSCDLLYQHFGI 658 (673) Q Consensus 599 d~~----------------~~~~~~~il~~~-~~~vtiE~g---~~~g~~~~~~~~~~~igid~Fg~sg~~~el~~~~Gl 658 (673) T Consensus 766 ~Rd~~~~er~n~LhP~~~~~~~yv~~~L~~~~gPvvAasDymr~~~dqIr~~vp~~y~~LGTDGFGrSDTR~~LR~fFeV 845 (889) T TIGR03186 766 ARDGRAAERAQRLGDAERPPSPHVAQALGATQGPVIAATDYVRAVPELIRAYVPRRYVTLGTDGFGRSDTRAALRAFFEV 845 (889) T ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCEEEECHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHCCC T ss_conf 87699999998609987777787999827999987996766665699999746998757348888754157999987582 Q ss_pred CHHHHHHHHHHHHC Q ss_conf 98999999999848 Q gi|254780655|r 659 NAIAIVDMVERKLS 672 (673) Q Consensus 659 d~~~I~~~i~~~L~ 672 (673) T Consensus 846 D~~~IvvaAL~~La 859 (889) T TIGR03186 846 DRASIVIAALQALA 859 (889) T ss_pred CHHHHHHHHHHHHH T ss_conf 88999999999999

HHsearch alignment for GI: 254780655 and conserved domain: TIGR03186