HHsearch alignment for GI: 254780655 and conserved domain: cd07037
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=95.20 E-value=0.057 Score=33.31 Aligned_cols=109 Identities=18% Similarity=0.110 Sum_probs=66.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEE-CCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCC-CCCCCCHHHHCCCCCHHHHHC
Q ss_conf 62002356787998728876220-0100355530012454111100001302454333-333331010002221011101
Q gi|254780655|r 419 VREHAMAAAMNGIALHKGLAPYS-GTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIG-LGEDGPTHQPVEHLAALRAIP 496 (673)
Q Consensus 419 IaE~~~~~~aaGla~~~g~~p~~-~tf~~F~~~~~~~ir~~al~~~~v~~v~th~gi~-~G~DGpTHq~iedia~lr~iP 496 (673)
T Consensus 42 ~hE~~A~~mA~gyar~tgkp~v~~~t~GPG~~N~~~gl~~A~~d~~Pvl~itg~~~~~~~g--~g~~Q~~dq~~l~~~it 119 (162)
T cd07037 42 VDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLTADRPPELRG--TGANQTIDQVGLFGDYV 119 (162)
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHCC--CCCCCCCCHHHHHHHHH
T ss_conf 6677899999999998799879994788358888899998753299889996899788617--89886437877736552
Q ss_pred CC--CEEEECCHH-------HHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 22--112112012-------4577776520256783499952
Q gi|254780655|r 497 DL--LVLRPADSI-------ETLECWQVALKEKNRPSVLSLS 529 (673)
Q Consensus 497 nl--~v~~P~d~~-------E~~~~~~~al~~~~gP~~ir~~ 529 (673)
T Consensus 120 K~s~~v~~~~~~~~~~~i~~~l~~A~~~A~tg~pGPV~l~lP 161 (162)
T cd07037 120 RWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECC
T ss_conf 078776883236557899999999999971899996898489