HHsearch alignment for GI: 254780655 and conserved domain: cd07039
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=94.31 E-value=0.096 Score=31.67 Aligned_cols=115 Identities=17% Similarity=0.059 Sum_probs=68.4
Q ss_pred HCCCCCCCHHHHHHHHHHHHHCCCCCCEEC-CCHHHHHHHHHHHHHHHHHHCCCEEECCCCCC-CCCCCCCHHHHCCCCC
Q ss_conf 003257620023567879987288762200-10035553001245411110000130245433-3333331010002221
Q gi|254780655|r 413 RYLHYGVREHAMAAAMNGIALHKGLAPYSG-TFMVFSDYSRPAIRLASLMGIRVIHVLTHDSI-GLGEDGPTHQPVEHLA 490 (673)
Q Consensus 413 r~i~~GIaE~~~~~~aaGla~~~g~~p~~~-tf~~F~~~~~~~ir~~al~~~~v~~v~th~gi-~~G~DGpTHq~iedia 490 (673)
T Consensus 40 ~~i~~-rhE~~A~~mA~gyar~tg~~gv~~~t~GpG~tN~~~gl~~A~~~~~Pll~i~g~~~~~~~~~--~~~Q~~d~~~ 116 (164)
T cd07039 40 EFIQV-RHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAGQVPTDELGT--DYFQEVDLLA 116 (164)
T ss_pred EEEEE-CCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHCCC--CCCCCCCHHH
T ss_conf 39954-87899999999999997998799984282388899999999985897799966775543489--9874274999
Q ss_pred HHHHHCCC--CEEEECCH-HHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 01110122--11211201-2457777652025678349995244
Q gi|254780655|r 491 ALRAIPDL--LVLRPADS-IETLECWQVALKEKNRPSVLSLSRQ 531 (673)
Q Consensus 491 ~lr~iPnl--~v~~P~d~-~E~~~~~~~al~~~~gP~~ir~~R~ 531 (673)
T Consensus 117 ~~~~~tK~~~~v~~~~~~~~~~~~A~~~A~~~~-GPV~l~iP~D 159 (164)
T cd07039 117 LFKDVAVYNETVTSPEQLPELLDRAIRTAIAKR-GVAVLILPGD 159 (164)
T ss_pred HHHHHHCEEEECCCHHHHHHHHHHHHHHHCCCC-CCEEEECCHH
T ss_conf 989974578885999999999999999854089-9999992879