Query         gi|254780655|ref|YP_003065068.1| transketolase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 673
No_of_seqs    226 out of 4615
Neff          7.1 
Searched_HMMs 39220
Date          Sun May 29 21:22:07 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780655.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 TIGR00232 tktlase_bact transke 100.0       0       0 1467.1  40.6  652   20-672     1-675 (675)
  2 COG0021 TktA Transketolase [Ca 100.0       0       0 1383.2  52.3  651   15-672     2-663 (663)
  3 PTZ00089 transketolase; Provis 100.0       0       0 1331.1  53.4  647   15-672     2-666 (670)
  4 PRK12753 transketolase; Review 100.0       0       0 1324.6  54.6  650   19-671     3-662 (662)
  5 PRK12754 transketolase; Review 100.0       0       0 1314.6  54.4  651   18-671     3-663 (663)
  6 PRK05899 transketolase; Review 100.0       0       0 1287.8  55.6  651   13-672     2-661 (661)
  7 KOG0523 consensus              100.0       0       0 1107.6  35.1  613   14-672     5-626 (632)
  8 PRK05444 1-deoxy-D-xylulose-5- 100.0       0       0 1038.4  44.0  551    1-671    10-576 (576)
  9 PRK12315 1-deoxy-D-xylulose-5- 100.0       0       0 1010.8  41.7  553    1-672     6-581 (581)
 10 PRK12571 1-deoxy-D-xylulose-5- 100.0       0       0  997.6  42.3  558    1-672    12-629 (642)
 11 COG1154 Dxs Deoxyxylulose-5-ph 100.0       0       0  928.0  37.9  559    1-672     8-623 (627)
 12 pfam00456 Transketolase_N Tran 100.0       0       0  716.4  27.6  324   19-343     2-333 (333)
 13 PRK09405 aceE pyruvate dehydro 100.0       0       0  580.6  44.5  637   15-672    74-857 (886)
 14 COG2609 AceE Pyruvate dehydrog 100.0       0       0  575.9  43.0  641   17-672    76-858 (887)
 15 TIGR00759 aceE 2-oxo-acid dehy 100.0       0       0  576.8  37.0  635   15-672    71-876 (905)
 16 cd02012 TPP_TK Thiamine pyroph 100.0       0       0  561.2  20.6  253   24-285     1-255 (255)
 17 PRK13012 2-oxoacid dehydrogena 100.0       0       0  529.1  41.5  629   16-672    86-869 (898)
 18 TIGR00204 dxs 1-deoxy-D-xylulo 100.0       0       0  530.9  31.8  558    1-672     4-627 (627)
 19 TIGR03186 AKGDH_not_PDH alpha- 100.0       0       0  515.3  40.3  629   17-672    73-859 (889)
 20 COG3959 Transketolase, N-termi 100.0       0       0  504.3  20.1  237   14-259     5-243 (243)
 21 COG3958 Transketolase, C-termi 100.0       0       0  500.7  20.8  294  364-671     7-312 (312)
 22 cd02017 TPP_E1_EcPDC_like Thia 100.0       0       0  426.6  23.9  270   17-292     2-354 (386)
 23 cd02007 TPP_DXS Thiamine pyrop 100.0       0       0  412.6  15.3  194   39-262     1-195 (195)
 24 PRK09212 pyruvate dehydrogenas 100.0 2.5E-43       0  332.7  21.6  297  364-672     4-324 (327)
 25 CHL00144 odpB pyruvate dehydro 100.0   3E-42       0  324.9  20.8  295  367-672     7-324 (326)
 26 PTZ00182 3-methyl-2-oxobutanat 100.0 2.1E-36 5.5E-41  282.5  21.6  292  364-672    35-355 (355)
 27 cd07033 TPP_PYR_DXS_TK_like Py 100.0 4.2E-36 1.1E-40  280.4   8.1  155  368-530     1-156 (156)
 28 PRK05261 putative phosphoketol 100.0 1.2E-29 3.1E-34  233.6  30.2  611   16-670     7-741 (786)
 29 pfam02779 Transket_pyr Transke 100.0   2E-33 5.1E-38  261.0   9.0  169  363-534     2-173 (174)
 30 COG3957 Phosphoketolase [Carbo 100.0 1.3E-29 3.4E-34  233.4  28.0  587   39-671    60-769 (793)
 31 PRK11892 pyruvate dehydrogenas 100.0 9.7E-29 2.5E-33  227.1  22.6  293  365-671   143-462 (464)
 32 smart00861 Transket_pyr Transk 100.0 7.3E-31 1.9E-35  242.5   9.3  165  365-532     1-168 (168)
 33 COG0022 AcoB Pyruvate/2-oxoglu 100.0 3.6E-27 9.1E-32  215.8  20.0  287  367-672     5-323 (324)
 34 KOG0524 consensus               99.9 8.9E-23 2.3E-27  183.9  16.8  294  364-672    35-359 (359)
 35 TIGR03181 PDH_E1_alph_x pyruva  99.9 4.8E-21 1.2E-25  171.4  19.9  172   73-263    76-252 (341)
 36 cd07036 TPP_PYR_E1-PDHc-beta_l  99.9 2.1E-23 5.4E-28  188.5   7.6  154  369-530     2-167 (167)
 37 CHL00149 odpA pyruvate dehydro  99.9 4.1E-20 1.1E-24  164.6  23.1  139  123-262   123-266 (343)
 38 cd02000 TPP_E1_PDC_ADC_BCADC T  99.9 2.2E-20 5.5E-25  166.7  18.8  173   73-262    49-233 (293)
 39 pfam00676 E1_dh Dehydrogenase   99.9 9.4E-20 2.4E-24  162.0  20.4  132  124-263    98-234 (303)
 40 TIGR03182 PDH_E1_alph_y pyruva  99.9 1.6E-19 4.1E-24  160.4  21.0  131  124-262   104-239 (315)
 41 COG1071 AcoA Pyruvate/2-oxoglu  99.8 1.2E-18 3.1E-23  154.0  19.2  133  124-263   130-267 (358)
 42 KOG1182 consensus               99.7 1.9E-16 4.8E-21  138.1   9.9  154   96-257   153-318 (432)
 43 pfam02780 Transketolase_C Tran  99.6 2.1E-15 5.2E-20  130.6  11.3  110  549-663     1-124 (124)
 44 pfam09364 XFP_N XFP N-terminal  99.6 2.9E-15 7.5E-20  129.5  10.4  244   16-278     4-308 (379)
 45 cd02011 TPP_PK Thiamine pyroph  99.6 1.4E-14 3.6E-19  124.6   8.7  174   79-264     2-210 (227)
 46 KOG0225 consensus               99.5 1.7E-13 4.4E-18  116.7   9.2  137  128-286   163-312 (394)
 47 KOG0525 consensus               99.5 2.3E-13   6E-18  115.7   9.2  243  411-672    86-361 (362)
 48 cd00568 TPP_enzymes Thiamine p  99.5 3.2E-13 8.2E-18  114.7   9.0  145   72-256    13-168 (168)
 49 PRK08659 2-oxoglutarate ferred  99.4   2E-10 5.1E-15   94.5  18.7  105  554-672   269-377 (377)
 50 PRK09627 oorA 2-oxoglutarate-a  99.3 2.9E-10 7.4E-15   93.3  14.9  233  420-670    55-375 (375)
 51 PRK07119 2-ketoisovalerate fer  99.3 3.8E-10 9.8E-15   92.5  15.1  237  419-672    54-349 (350)
 52 cd03371 TPP_PpyrDC Thiamine py  99.3   1E-10 2.6E-15   96.7  11.6  148   73-260    16-166 (188)
 53 PRK06457 pyruvate dehydrogenas  99.2 2.7E-09 6.8E-14   86.4  15.1  100  426-529   405-517 (549)
 54 cd02010 TPP_ALS Thiamine pyrop  99.2 3.2E-10 8.1E-15   93.1  10.1  114  128-256    46-169 (177)
 55 TIGR03457 sulphoacet_xsc sulfo  99.1 2.2E-09 5.6E-14   87.0  12.4  154  372-531   385-559 (579)
 56 PRK09107 acetolactate synthase  99.1 4.2E-10 1.1E-14   92.2   8.1   32  497-529   520-551 (594)
 57 pfam02775 TPP_enzyme_C Thiamin  99.1 4.2E-10 1.1E-14   92.2   7.9  113  127-254    25-150 (150)
 58 cd02015 TPP_AHAS Thiamine pyro  99.1 4.5E-10 1.1E-14   92.0   7.9  114  129-257    49-174 (186)
 59 cd02014 TPP_POX Thiamine pyrop  99.1 4.5E-10 1.1E-14   92.0   7.7  116  127-257    48-173 (178)
 60 PRK06965 acetolactate synthase  99.1 6.3E-10 1.6E-14   90.9   8.5  119  409-528   425-559 (587)
 61 PRK06546 pyruvate dehydrogenas  99.1 6.4E-10 1.6E-14   90.9   8.3  101  427-529   416-528 (578)
 62 cd02004 TPP_BZL_OCoD_HPCL Thia  99.1 5.9E-10 1.5E-14   91.1   7.9  114  128-256    46-171 (172)
 63 cd02001 TPP_ComE_PpyrDC Thiami  99.1 5.7E-10 1.5E-14   91.2   7.8  118  126-259    38-157 (157)
 64 PRK07789 acetolactate synthase  99.1 6.7E-10 1.7E-14   90.7   7.8  119  409-528   435-573 (612)
 65 PRK07092 benzoylformate decarb  99.1 8.5E-10 2.2E-14   90.0   8.3   85  166-254    72-159 (521)
 66 PRK08266 hypothetical protein;  99.1   7E-10 1.8E-14   90.6   7.8   29  497-526   489-517 (531)
 67 PRK08155 acetolactate synthase  99.1 6.4E-10 1.6E-14   90.9   7.6  103  425-529   425-541 (564)
 68 PRK08527 acetolactate synthase  99.1 6.4E-10 1.6E-14   90.9   7.6  151  372-528   370-536 (560)
 69 PRK09124 pyruvate dehydrogenas  99.1 7.4E-10 1.9E-14   90.4   7.8  120  407-529   394-528 (574)
 70 PRK06725 acetolactate synthase  99.1 6.8E-10 1.7E-14   90.7   7.6  121  406-529   407-543 (570)
 71 PRK06276 acetolactate synthase  99.1 6.8E-10 1.7E-14   90.7   7.6  123  405-529   403-541 (586)
 72 PRK08978 acetolactate synthase  99.1 8.5E-10 2.2E-14   90.0   8.0   32  497-529   492-523 (548)
 73 PRK05858 hypothetical protein;  99.0 8.5E-10 2.2E-14   90.0   7.9   31  497-528   498-528 (543)
 74 PRK07064 hypothetical protein;  99.0 1.3E-09 3.3E-14   88.6   8.8   31  497-528   495-525 (544)
 75 PRK06466 acetolactate synthase  99.0 7.1E-10 1.8E-14   90.5   7.4  121  407-528   409-545 (574)
 76 PRK07710 acetolactate synthase  99.0 6.2E-10 1.6E-14   91.0   7.0  119  407-528   410-545 (571)
 77 TIGR03297 Ppyr-DeCO2ase phosph  99.0   3E-09 7.5E-14   86.1  10.5  113  410-528   213-333 (361)
 78 PRK06456 acetolactate synthase  99.0 7.3E-10 1.9E-14   90.4   7.3  152  372-529   376-543 (572)
 79 PRK07524 hypothetical protein;  99.0 8.3E-10 2.1E-14   90.0   7.6   31  559-590   427-457 (534)
 80 PRK08611 pyruvate oxidase; Pro  99.0 8.6E-10 2.2E-14   89.9   7.6  152  371-529   362-528 (576)
 81 PRK12474 hypothetical protein;  99.0 1.2E-09 2.9E-14   89.0   8.2   42  213-254   118-162 (518)
 82 CHL00099 ilvB acetohydroxyacid  99.0 9.1E-10 2.3E-14   89.8   7.6   31  497-528   518-548 (588)
 83 PRK08322 acetolactate synthase  99.0 9.4E-10 2.4E-14   89.7   7.6   31  497-528   495-525 (547)
 84 PRK08199 acetolactate synthase  99.0 1.4E-09 3.5E-14   88.4   8.4   17  236-252   140-157 (553)
 85 cd02003 TPP_IolD Thiamine pyro  99.0 1.1E-09 2.7E-14   89.3   7.7  116  128-258    46-185 (205)
 86 PRK07418 acetolactate synthase  99.0 1.2E-09   3E-14   89.0   7.9  151  371-530   390-560 (615)
 87 PRK06882 acetolactate synthase  99.0 1.2E-09 2.9E-14   89.0   7.7   73  455-527   458-542 (574)
 88 cd02002 TPP_BFDC Thiamine pyro  99.0 8.7E-10 2.2E-14   89.9   7.1  112  129-255    48-177 (178)
 89 PRK08617 acetolactate synthase  99.0 1.6E-09   4E-14   88.1   8.1   30  497-527   503-532 (552)
 90 PRK07282 acetolactate synthase  99.0 1.1E-09 2.7E-14   89.3   7.2   30  497-528   509-538 (566)
 91 PRK06112 acetolactate synthase  99.0 1.4E-09 3.6E-14   88.4   7.8   31  497-528   530-560 (581)
 92 PRK06048 acetolactate synthase  99.0 1.1E-09 2.7E-14   89.3   7.0  121  406-528   399-535 (562)
 93 TIGR03393 indolpyr_decarb indo  99.0 1.5E-09 3.7E-14   88.3   7.7  105  428-535   413-533 (539)
 94 cd02005 TPP_PDC_IPDC Thiamine   99.0   2E-09   5E-14   87.3   8.0  113  129-256    49-173 (183)
 95 PRK07586 hypothetical protein;  99.0 1.9E-09 4.8E-14   87.5   7.8   26  229-254   131-158 (514)
 96 PRK07979 acetolactate synthase  99.0 1.6E-09   4E-14   88.1   7.3   30  497-526   512-543 (574)
 97 PRK08979 acetolactate synthase  99.0 1.9E-09 4.9E-14   87.4   7.3  121  407-528   407-543 (572)
 98 PRK07525 sulfoacetaldehyde ace  99.0 2.9E-09 7.4E-14   86.1   8.0   38  497-534   526-568 (589)
 99 cd02013 TPP_Xsc_like Thiamine   99.0 3.1E-09 7.9E-14   85.9   8.0  117  127-258    50-180 (196)
100 PRK06154 hypothetical protein;  99.0   3E-09 7.8E-14   86.0   7.6   18  236-253   146-164 (556)
101 PRK06163 hypothetical protein;  99.0 5.5E-09 1.4E-13   84.1   8.8  114  126-256    53-172 (202)
102 PRK08327 acetolactate synthase  98.9 3.3E-09 8.5E-14   85.7   7.5   33  558-590   449-482 (568)
103 PRK09259 putative oxalyl-CoA d  98.9 4.1E-09   1E-13   85.0   7.7  116  410-529   416-547 (572)
104 TIGR03254 oxalate_oxc oxalyl-C  98.9 4.9E-09 1.2E-13   84.5   7.1  101  426-529   424-536 (554)
105 COG0028 IlvB Thiamine pyrophos  98.9 3.7E-09 9.4E-14   85.4   6.4  150  370-529   361-529 (550)
106 TIGR03394 indol_phenyl_DC indo  98.9 8.9E-09 2.3E-13   82.6   8.2   17  123-141    64-80  (535)
107 PRK08273 pyruvate decarboxylas  98.9 6.8E-09 1.7E-13   83.5   7.5  164  371-539   369-555 (597)
108 PRK11269 glyoxylate carboligas  98.9 1.1E-08 2.8E-13   82.0   8.1  149  372-527   374-552 (591)
109 cd02006 TPP_Gcl Thiamine pyrop  98.9 1.1E-08 2.8E-13   81.9   8.1  114  128-256    55-193 (202)
110 PRK07449 2-succinyl-6-hydroxy-  98.9   1E-08 2.7E-13   82.1   7.8   31  497-528   496-526 (548)
111 PRK08367 porA pyruvate ferredo  98.8 8.7E-08 2.2E-12   75.4  11.8   63  556-621   259-321 (395)
112 cd02009 TPP_SHCHC_synthase Thi  98.8 1.4E-08 3.5E-13   81.2   7.4  114  127-256    46-174 (175)
113 cd03372 TPP_ComE Thiamine pyro  98.8 3.6E-08 9.2E-13   78.2   8.3  115  127-259    39-157 (179)
114 PRK08366 vorA 2-ketoisovalerat  98.8 6.9E-07 1.8E-11   68.9  14.1   63  556-621   261-323 (394)
115 PRK09622 porA pyruvate flavodo  98.7 6.8E-07 1.7E-11   69.0  13.9  199  413-620    58-326 (407)
116 PRK09404 kgd alpha-ketoglutara  98.6 8.4E-05 2.1E-09   53.8  20.9  204  415-627   653-880 (931)
117 cd02008 TPP_IOR_alpha Thiamine  98.5 3.3E-07 8.5E-12   71.2   7.4  113  130-255    51-175 (178)
118 TIGR00118 acolac_lg acetolacta  98.3   2E-06 5.1E-11   65.5   5.8  394   40-528    21-568 (593)
119 TIGR03336 IOR_alpha indolepyru  98.2  0.0004   1E-08   48.9  16.5  105  425-530   409-529 (595)
120 COG3961 Pyruvate decarboxylase  98.1 5.3E-06 1.4E-10   62.5   6.0   28  229-256   141-169 (557)
121 COG0674 PorA Pyruvate:ferredox  98.1 0.00016 4.2E-09   51.7  13.4   65  557-624   255-322 (365)
122 PRK12270 kgd alpha-ketoglutara  98.1  0.0015 3.7E-08   44.9  20.0  204  415-627   957-1184(1234)
123 KOG1185 consensus               98.0 6.9E-05 1.8E-09   54.4  10.0  184   40-253     8-224 (571)
124 cd03375 TPP_OGFOR Thiamine pyr  98.0 2.5E-05 6.3E-10   57.7   7.6  113  132-256    53-183 (193)
125 COG4231 Indolepyruvate ferredo  98.0 0.00099 2.5E-08   46.1  15.7  104  425-530   434-553 (640)
126 COG3962 Acetolactate synthase   98.0 1.8E-05 4.6E-10   58.6   5.8   89  133-243    65-169 (617)
127 KOG0451 consensus               97.8 0.00053 1.4E-08   48.0  11.5  503   72-602   210-839 (913)
128 KOG1184 consensus               97.8 4.9E-05 1.2E-09   55.5   5.8   30  229-258   141-171 (561)
129 cd03376 TPP_PFOR_porB_like Thi  97.7 0.00033 8.5E-09   49.5   9.2  123  129-257    55-200 (235)
130 TIGR02720 pyruv_oxi_spxB pyruv  97.6 0.00017 4.4E-09   51.6   6.2   16   40-57     19-34  (577)
131 cd06586 TPP_enzyme_PYR Pyrimid  97.6 0.00018 4.5E-09   51.5   6.0  117  411-530    34-154 (154)
132 COG4231 Indolepyruvate ferredo  97.6 0.00012   3E-09   52.8   5.1   16   39-56     35-50  (640)
133 PRK08322 acetolactate synthase  97.5 0.00073 1.9E-08   47.0   8.5   19  235-253   137-156 (547)
134 cd02018 TPP_PFOR Thiamine pyro  97.5  0.0015 3.8E-08   44.8   9.4  127  129-256    57-202 (237)
135 TIGR03336 IOR_alpha indolepyru  97.5 0.00026 6.8E-09   50.2   5.4   28  569-596   505-533 (595)
136 PRK11864 2-ketoisovalerate fer  97.4  0.0014 3.6E-08   45.0   8.8  123  132-262    71-214 (300)
137 pfam03894 XFP D-xylulose 5-pho  97.3 0.00051 1.3E-08   48.1   5.6  146  370-518     4-178 (179)
138 PRK11865 pyruvate ferredoxin o  97.3  0.0035 8.9E-08   42.1   9.3  119  131-257    68-209 (298)
139 PRK07525 sulfoacetaldehyde ace  97.2  0.0033 8.4E-08   42.3   8.9   42  213-254   118-161 (589)
140 PRK07092 benzoylformate decarb  97.0   0.012 3.1E-07   38.2  10.2  115  410-528   388-518 (521)
141 PRK07979 acetolactate synthase  97.0  0.0085 2.2E-07   39.3   9.4   25  230-254   135-161 (574)
142 pfam09363 XFP_C XFP C-terminal  97.0   0.037 9.4E-07   34.7  12.2  130  541-670    12-161 (203)
143 TIGR02176 pyruv_ox_red pyruvat  97.0   0.004   1E-07   41.7   7.2   61  556-619   262-322 (1194)
144 PRK07789 acetolactate synthase  96.9  0.0055 1.4E-07   40.7   7.3   32  558-590   466-497 (612)
145 cd02016 TPP_E1_OGDC_like Thiam  96.9  0.0033 8.4E-08   42.3   6.2  119  137-262   120-251 (265)
146 PRK07282 acetolactate synthase  96.9  0.0041   1E-07   41.6   6.5   42  547-590   427-468 (566)
147 TIGR02418 acolac_catab acetola  96.9  0.0043 1.1E-07   41.5   6.6   23  567-593   421-443 (553)
148 PRK08199 acetolactate synthase  96.9  0.0043 1.1E-07   41.5   6.5  100  427-528   417-529 (553)
149 PRK09628 oorB 2-oxoglutarate-a  96.8  0.0095 2.4E-07   39.0   8.0  111  133-256    71-200 (281)
150 PRK08527 acetolactate synthase  96.8  0.0077   2E-07   39.6   7.2   32  558-590   434-465 (560)
151 PRK07064 hypothetical protein;  96.7  0.0056 1.4E-07   40.6   6.4   33  557-590   423-455 (544)
152 PRK11867 2-oxoglutarate ferred  96.7   0.019 4.8E-07   36.8   9.1  119  122-256    63-200 (280)
153 TIGR03254 oxalate_oxc oxalyl-C  96.7   0.025 6.4E-07   35.9   9.6   33  558-591   435-467 (554)
154 COG1013 PorB Pyruvate:ferredox  96.7   0.011 2.9E-07   38.4   7.8  111  133-256    73-203 (294)
155 PRK06882 acetolactate synthase  96.7  0.0054 1.4E-07   40.7   6.1   26  229-254   134-161 (574)
156 PRK07710 acetolactate synthase  96.7   0.007 1.8E-07   39.9   6.6   32  558-590   443-474 (571)
157 PRK06112 acetolactate synthase  96.7   0.023 5.8E-07   36.2   9.1   42  213-254   127-171 (581)
158 PRK11866 2-oxoacid ferredoxin   96.6   0.024 6.2E-07   36.0   8.7  119  122-256    62-199 (286)
159 PRK07418 acetolactate synthase  96.6   0.028 7.2E-07   35.5   9.0   32  558-590   453-484 (615)
160 TIGR03457 sulphoacet_xsc sulfo  96.5  0.0051 1.3E-07   40.9   5.1   42  213-254   114-157 (579)
161 PRK08978 acetolactate synthase  96.5  0.0072 1.8E-07   39.8   5.7   33  557-590   419-451 (548)
162 PRK05858 hypothetical protein;  96.5  0.0061 1.6E-07   40.3   5.4   21  234-254   142-163 (543)
163 PRK05778 2-oxoglutarate ferred  96.5   0.021 5.2E-07   36.5   7.9  112  133-256    73-202 (306)
164 PRK06965 acetolactate synthase  96.5   0.032   8E-07   35.2   8.7   32  223-254   145-178 (587)
165 PRK08155 acetolactate synthase  96.4  0.0066 1.7E-07   40.1   5.0   33  557-590   437-469 (564)
166 pfam02776 TPP_enzyme_N Thiamin  96.4   0.008   2E-07   39.5   5.4  113  419-531    46-162 (172)
167 PRK11869 2-oxoacid ferredoxin   96.4   0.046 1.2E-06   34.0   9.3  111  133-256    67-196 (284)
168 PRK09259 putative oxalyl-CoA d  96.4   0.018 4.5E-07   37.0   7.0   21  234-254   150-171 (572)
169 PRK06276 acetolactate synthase  96.3   0.027 6.8E-07   35.7   7.8   33  557-590   437-469 (586)
170 PRK08979 acetolactate synthase  96.3  0.0088 2.3E-07   39.2   5.4   33  557-590   439-471 (572)
171 CHL00099 ilvB acetohydroxyacid  96.3   0.016 4.1E-07   37.3   6.3   32  558-590   445-476 (588)
172 PRK06466 acetolactate synthase  96.2  0.0096 2.4E-07   38.9   5.0   42  547-590   432-473 (574)
173 PRK06725 acetolactate synthase  96.2   0.012   3E-07   38.3   5.2   43  546-590   430-472 (570)
174 PRK08327 acetolactate synthase  96.2   0.041   1E-06   34.4   8.0   31  497-527   530-562 (568)
175 PRK06048 acetolactate synthase  96.1   0.015 3.9E-07   37.5   5.6   42  213-254   120-164 (562)
176 cd07034 TPP_PYR_PFOR_IOR-alpha  96.1   0.017 4.3E-07   37.1   5.9  113  411-528    41-158 (160)
177 pfam01855 POR_N domain. This f  96.1   0.018 4.6E-07   36.9   5.8  106  419-528    43-152 (230)
178 PRK06456 acetolactate synthase  96.0   0.047 1.2E-06   34.0   7.6   31  559-590   441-471 (572)
179 PRK11269 glyoxylate carboligas  96.0   0.023 5.7E-07   36.2   5.9   31  223-253   129-161 (591)
180 PRK08273 pyruvate decarboxylas  95.9   0.052 1.3E-06   33.6   7.5   21  234-254   141-161 (597)
181 PRK12474 hypothetical protein;  95.7   0.049 1.2E-06   33.8   6.8   30  497-527   486-515 (518)
182 PRK09107 acetolactate synthase  95.7   0.041   1E-06   34.4   6.3   33  557-590   447-479 (594)
183 PRK07524 hypothetical protein;  95.6   0.024 6.1E-07   36.0   4.8  100  425-527   413-525 (534)
184 COG0028 IlvB Thiamine pyrophos  95.5   0.034 8.6E-07   35.0   5.4   18  236-253   139-157 (550)
185 PRK07586 hypothetical protein;  95.5   0.067 1.7E-06   32.8   6.8   30  497-527   482-511 (514)
186 PRK07449 2-succinyl-6-hydroxy-  95.2    0.27 6.9E-06   28.4   9.2   33  557-590   423-455 (548)
187 cd07037 TPP_PYR_MenD Pyrimidin  95.2   0.057 1.5E-06   33.3   5.7  109  419-529    42-161 (162)
188 PRK08266 hypothetical protein;  95.2   0.051 1.3E-06   33.7   5.3   22  233-254   140-162 (531)
189 cd07035 TPP_PYR_POX_like Pyrim  95.2   0.079   2E-06   32.3   6.3  114  413-530    36-155 (155)
190 COG1165 MenD 2-succinyl-6-hydr  94.8    0.36 9.2E-06   27.5  13.7   44  138-195    61-104 (566)
191 PRK06154 hypothetical protein;  94.7    0.07 1.8E-06   32.7   5.1  120  405-526   406-541 (556)
192 COG0567 SucA 2-oxoglutarate de  94.6     0.4   1E-05   27.2  20.2  178  416-600   631-827 (906)
193 cd07039 TPP_PYR_POX Pyrimidine  94.3   0.096 2.5E-06   31.7   5.0  115  413-531    40-159 (164)
194 PRK08611 pyruvate oxidase; Pro  94.3    0.16   4E-06   30.2   6.0   20  235-254   142-161 (576)
195 TIGR03394 indol_phenyl_DC indo  94.2    0.14 3.5E-06   30.6   5.6   21  234-254   142-162 (535)
196 cd07038 TPP_PYR_PDC_IPDC_like   93.8    0.19 4.9E-06   29.5   5.6  110  419-530    42-162 (162)
197 PRK09124 pyruvate dehydrogenas  93.7    0.36 9.2E-06   27.5   7.0   32  558-590   427-458 (574)
198 PRK06457 pyruvate dehydrogenas  93.5    0.62 1.6E-05   25.8  11.9   21  234-254   138-158 (549)
199 TIGR02176 pyruv_ox_red pyruvat  93.0    0.26 6.7E-06   28.5   5.3   20  573-594   503-522 (1194)
200 PRK06546 pyruvate dehydrogenas  93.0    0.58 1.5E-05   26.0   7.1   21  234-254   139-159 (578)
201 TIGR01318 gltD_gamma_fam gluta  92.2    0.49 1.3E-05   26.5   5.8   79  502-588   330-422 (480)
202 TIGR01504 glyox_carbo_lig glyo  91.1    0.55 1.4E-05   26.2   5.2   24  560-583   522-545 (593)
203 KOG4166 consensus               90.2     0.6 1.5E-05   25.9   4.7   85  161-252   157-246 (675)
204 TIGR02177 PorB_KorB 2-oxoacid:  88.7    0.31 7.9E-06   28.0   2.3   55  133-202    56-113 (302)
205 TIGR01316 gltA glutamate synth  88.5     1.3 3.3E-05   23.5   5.4   15  170-184    54-68  (462)
206 cd03377 TPP_PFOR_PNO Thiamine   88.4     1.3 3.3E-05   23.5   5.4   96  160-256   152-266 (365)
207 TIGR01317 GOGAT_sm_gam glutama  84.8     1.5 3.9E-05   23.0   4.1   22  546-567   409-436 (517)
208 pfam00070 Pyr_redox Pyridine n  81.3     3.6 9.2E-05   20.3   4.9   50  560-612     1-52  (82)
209 COG3960 Glyoxylate carboligase  80.1     1.5 3.8E-05   23.1   2.6   12  411-422   409-420 (592)
210 TIGR01931 cysJ sulfite reducta  80.0     4.2 0.00011   19.8   6.6   20   73-92     69-88  (628)
211 PRK13984 putative oxidoreducta  77.6     4.6 0.00012   19.5   4.5   27  502-528   462-490 (604)
212 TIGR02483 PFK_mixed phosphofru  75.1     5.8 0.00015   18.8   7.9  108  451-590   163-284 (339)
213 PRK12769 putative oxidoreducta  75.1     5.4 0.00014   19.0   4.2   14  503-516   507-520 (654)
214 PRK12831 putative oxidoreducta  73.2     6.4 0.00016   18.5   4.6   12  559-570   385-396 (464)
215 PRK12810 gltD glutamate syntha  71.2       7 0.00018   18.2   4.4   10  559-568   391-400 (472)
216 cd01990 Alpha_ANH_like_I This   70.7     7.2 0.00018   18.1   7.9   57  136-203     9-66  (202)
217 pfam00656 Peptidase_C14 Caspas  69.3     6.6 0.00017   18.4   3.6   72  191-262     2-75  (230)
218 TIGR02371 ala_DH_arch alanine   68.9     5.5 0.00014   19.0   3.1   18  147-170   122-139 (327)
219 pfam10740 DUF2529 Protein of u  66.0     8.9 0.00023   17.5   3.8   36  557-592    81-116 (172)
220 PRK12771 putative glutamate sy  65.8       9 0.00023   17.4   4.4   20   87-109    62-81  (560)
221 TIGR02482 PFKA_ATP 6-phosphofr  65.2     5.4 0.00014   19.0   2.5   36  556-591   211-248 (302)
222 PRK07494 2-octaprenyl-6-methox  64.7     9.4 0.00024   17.3   4.6   16  566-581   294-309 (386)
223 PRK11749 putative oxidoreducta  64.0     9.7 0.00025   17.2   4.6   11  559-569   379-389 (460)
224 TIGR01658 EYA-cons_domain EYA   63.5     5.1 0.00013   19.2   2.1   36  551-597   266-301 (319)
225 COG4032 Predicted thiamine-pyr  63.4     6.2 0.00016   18.6   2.5   99  420-529    50-162 (172)
226 TIGR03385 CoA_CoA_reduc CoA-di  63.2      10 0.00025   17.1   5.8   22  163-188   140-161 (427)
227 PRK12814 putative NADPH-depend  63.1      10 0.00026   17.1   5.8   63   13-110    75-137 (652)
228 PRK06617 2-octaprenyl-6-methox  62.4      10 0.00026   17.0   4.8   15  567-581   290-304 (374)
229 TIGR02875 spore_0_A sporulatio  62.0      10 0.00027   16.9   4.1   25  505-536   211-235 (270)
230 PRK12775 putative trifunctiona  61.9      10 0.00027   16.9   7.5  106   75-206    62-168 (993)
231 PRK06184 hypothetical protein;  61.7      11 0.00027   16.9   4.5   26  410-435   300-325 (503)
232 PRK07208 hypothetical protein;  59.8      11 0.00029   16.7   4.7   11  575-585   370-380 (474)
233 PRK06827 phosphoribosylpyropho  58.0      12 0.00031   16.5   7.2   93  496-599   208-306 (381)
234 PRK08773 2-octaprenyl-3-methyl  57.9      12 0.00031   16.5   4.6   14  567-580   299-312 (392)
235 PRK12778 putative bifunctional  57.9      12 0.00031   16.5   4.4   38  557-597   577-615 (760)
236 TIGR03315 Se_ygfK putative sel  57.7      12 0.00031   16.4   4.6   17  502-518   705-721 (1012)
237 PRK12409 D-amino acid dehydrog  57.3      12 0.00032   16.4   4.3   21  562-582   378-401 (410)
238 PRK11595 gluconate periplasmic  57.1      13 0.00032   16.4   5.8   26  563-591   196-222 (227)
239 PRK06126 hypothetical protein;  56.3      13 0.00033   16.3   4.6   14  581-594   491-504 (545)
240 PRK04926 dgt deoxyguanosinetri  56.2      13 0.00033   16.3   5.1   54   63-145    27-81  (503)
241 pfam01494 FAD_binding_3 FAD bi  56.2      13 0.00033   16.3   4.4   17  566-582   300-316 (349)
242 COG1040 ComFC Predicted amidop  55.8      13 0.00033   16.2   4.5   60  523-585   147-212 (225)
243 PRK09126 hypothetical protein;  55.8      13 0.00034   16.2   4.3   15  567-581   297-311 (392)
244 PRK09853 putative selenate red  55.6      13 0.00034   16.2   4.7   14  503-516   719-732 (1032)
245 TIGR01162 purE phosphoribosyla  55.4      13 0.00034   16.2   5.7  104  561-670     2-143 (159)
246 PRK12770 putative glutamate sy  55.0      14 0.00034   16.1   4.5   34  159-198    16-49  (350)
247 TIGR02025 BchH magnesium chela  54.7     9.6 0.00024   17.2   2.3   60  465-527   652-714 (1384)
248 TIGR01136 cysKM cysteine synth  53.9      10 0.00027   16.9   2.3   40  553-593   263-302 (315)
249 KOG0029 consensus               53.7      14 0.00036   16.0   4.7   17  497-513   275-291 (501)
250 pfam07992 Pyr_redox_2 Pyridine  53.4      14 0.00036   16.0   4.3   11  559-569   224-234 (277)
251 PRK10964 ADP-heptose:LPS hepto  53.4      14 0.00036   16.0   6.3   20  654-673   303-322 (322)
252 PRK01747 mnmC 5-methylaminomet  52.9      15 0.00037   15.9   4.4   18  213-230   205-222 (660)
253 COG1691 NCAIR mutase (PurE)-re  52.8      15 0.00037   15.9  10.4   84  559-646   118-210 (254)
254 TIGR01703 hybrid_clust hydroxy  52.8     8.8 0.00023   17.5   1.8   40  225-264   248-291 (567)
255 PRK07190 hypothetical protein;  51.6      15 0.00039   15.8   4.4   18  410-427   290-307 (480)
256 CHL00194 ycf39 Ycf39; Provisio  50.8      16  0.0004   15.7   3.9   83  566-664   203-286 (319)
257 PRK07364 2-octaprenyl-6-methox  50.6      16  0.0004   15.7   4.6   10  572-581   319-328 (413)
258 TIGR00461 gcvP glycine dehydro  50.3      10 0.00026   17.1   1.8   23  572-594   839-861 (965)
259 PRK08244 hypothetical protein;  50.2      16 0.00041   15.6   4.5   18  410-427   287-304 (494)
260 pfam03853 YjeF_N YjeF-related   50.0      16 0.00041   15.6   6.4   53  139-195    11-63  (170)
261 PRK06183 mhpA 3-(3-hydroxyphen  50.0      16 0.00041   15.6   4.5   18  410-427   303-320 (554)
262 PRK07608 hypothetical protein;  49.6      16 0.00041   15.6   4.7   15  567-581   298-312 (389)
263 TIGR00292 TIGR00292 thiazole b  48.6      17 0.00043   15.4   3.1   21  121-143    21-41  (283)
264 PRK05318 deoxyguanosinetriphos  48.2      17 0.00044   15.4   4.5   55   64-147    21-76  (442)
265 PRK06834 hypothetical protein;  48.2      17 0.00044   15.4   4.6   16  411-426   281-296 (488)
266 PRK08020 ubiF 2-octaprenyl-3-m  48.0      17 0.00044   15.4   5.4   11  651-661   364-374 (391)
267 TIGR03364 HpnW_proposed FAD de  48.0      17 0.00044   15.4   4.0   16  163-178     3-18  (365)
268 pfam04430 DUF498 Protein of un  47.9      13 0.00032   16.4   2.0   37  557-593    52-89  (110)
269 PRK09754 phenylpropionate diox  47.3      18 0.00045   15.3   4.5   28  557-586   357-384 (400)
270 KOG3107 consensus               47.1      18 0.00045   15.3   4.2   19  557-575   421-439 (468)
271 KOG1257 consensus               46.9      18 0.00045   15.3   7.3   38  496-534   416-454 (582)
272 TIGR02733 desat_CrtD C-3',4' d  46.7      18 0.00046   15.2   4.2   32  614-645   420-456 (499)
273 TIGR01060 eno phosphopyruvate   45.3      19 0.00048   15.1   3.8   22  305-326   172-193 (430)
274 PRK11259 solA N-methyltryptoph  45.2      19 0.00048   15.1   4.1   17  567-583   341-357 (377)
275 pfam03698 UPF0180 Uncharacteri  45.2      19 0.00048   15.1   5.3   68  575-671    12-79  (80)
276 pfam11843 DUF3363 Protein of u  44.8      19 0.00049   15.0   4.0  100  477-586    96-203 (312)
277 TIGR00747 fabH 3-oxoacyl-(acyl  44.0      20  0.0005   15.0   2.7   12  610-621   271-282 (329)
278 TIGR02640 gas_vesic_GvpN gas v  43.9      20  0.0005   14.9   3.0   48  107-173    13-60  (265)
279 cd06372 PBP1_GC_G_like Ligand-  43.8      20  0.0005   14.9   6.2   64  160-227    67-141 (391)
280 PRK08010 pyridine nucleotide-d  43.7      20 0.00051   14.9   6.3   27  558-593   335-361 (441)
281 TIGR01421 gluta_reduc_1 glutat  43.4      20 0.00051   14.9   3.6   12  571-582   335-346 (475)
282 COG1635 THI4 Ribulose 1,5-bisp  43.4      20 0.00051   14.9   3.5   11  561-571   169-179 (262)
283 PRK06116 glutathione reductase  43.1      20 0.00052   14.9   7.1   34  634-667   399-436 (450)
284 PRK08294 phenol 2-monooxygenas  42.7      20 0.00052   14.8   4.4   24  411-434   356-379 (634)
285 cd05126 Mth938 Mth938 domain.   41.7      21 0.00054   14.7   3.4   35  556-590    56-92  (117)
286 TIGR02788 VirB11 P-type DNA tr  41.6      18 0.00045   15.3   2.0   36  453-497   149-184 (328)
287 PRK13557 histidine kinase; Pro  41.1      16  0.0004   15.6   1.6   23   73-105    51-73  (538)
288 cd05560 Xcc1710_like Xcc1710_l  40.9      18 0.00045   15.3   1.8   37  557-593    51-88  (109)
289 COG0426 FpaA Uncharacterized f  40.7      22 0.00056   14.6   8.7   94  560-658   248-358 (388)
290 PRK05290 hydroxylamine reducta  40.6      17 0.00043   15.4   1.7   39  226-264   235-273 (540)
291 cd06384 PBP1_NPR_B Ligand-bind  40.6      22 0.00056   14.6   3.8   62  161-224    73-144 (399)
292 cd05125 Mth938_2P1-like Mth938  40.6      17 0.00044   15.4   1.7   37  557-593    53-90  (114)
293 PRK10565 hypothetical protein;  40.5      22 0.00056   14.6   6.9   52  140-196    45-96  (515)
294 pfam11823 DUF3343 Protein of u  40.4      22 0.00056   14.6   3.3   31  563-594     5-35  (73)
295 cd01883 EF1_alpha Eukaryotic e  40.1      22 0.00057   14.5   4.3   33  167-201   111-148 (219)
296 PRK07045 putative monooxygenas  39.4      23 0.00058   14.5   4.3   16  567-582   302-317 (388)
297 PRK03007 deoxyguanosinetriphos  39.3      23 0.00059   14.5   3.3   52   65-145    34-86  (428)
298 cd00248 Mth938-like Mth938-lik  39.0      17 0.00042   15.5   1.5   37  557-593    51-88  (109)
299 PRK13479 2-aminoethylphosphona  39.0      23 0.00059   14.4   7.8   30  212-241    93-127 (368)
300 PRK05569 flavodoxin; Provision  39.0      23 0.00059   14.4   5.2   31  566-596    12-42  (141)
301 COG3770 MepA Murein endopeptid  39.0      22 0.00056   14.6   2.1   58  218-276    58-122 (284)
302 smart00115 CASc Caspase, inter  39.0      23 0.00059   14.4   4.0   54  191-244    10-65  (241)
303 PRK06370 mercuric reductase; V  38.7      23  0.0006   14.4   5.3   14  580-593   363-376 (459)
304 PRK07589 ornithine cyclodeamin  38.4      24  0.0006   14.4   5.5   78  133-229   108-185 (346)
305 PRK01286 deoxyguanosinetriphos  38.1      24 0.00061   14.3   2.4   44   66-138    27-70  (338)
306 PRK12310 hydroxylamine reducta  38.1      20 0.00051   14.9   1.7   40  225-264   124-163 (429)
307 PRK08774 consensus              37.6      24 0.00062   14.3   4.5   11  567-577   300-310 (402)
308 cd00859 HisRS_anticodon HisRS   37.5      24 0.00062   14.3   4.6   32  560-591     3-35  (91)
309 PRK12779 putative bifunctional  37.2      25 0.00063   14.2   4.5   40  559-598   751-791 (944)
310 cd01914 HCP Hybrid cluster pro  37.0      21 0.00053   14.8   1.7   40  225-264   119-158 (423)
311 COG0461 PyrE Orotate phosphori  36.1      12  0.0003   16.6   0.3   31  564-601   122-152 (201)
312 PRK06475 salicylate hydroxylas  36.0      26 0.00066   14.1   4.3   17  566-582   308-324 (400)
313 TIGR01139 cysK cysteine syntha  35.7      26 0.00066   14.1   2.7   39  553-592   262-300 (312)
314 PRK03094 hypothetical protein;  35.4      26 0.00067   14.0   5.3   68  575-671    12-79  (80)
315 TIGR03452 mycothione_red mycot  35.0      27 0.00068   14.0   6.5   13  579-591   358-370 (452)
316 pfam12005 DUF3499 Protein of u  35.0      20  0.0005   15.0   1.3   30  215-244    49-88  (125)
317 TIGR01517 ATPase-IIB_Ca calciu  34.7      27 0.00069   14.0   2.3   21  597-621   615-635 (885)
318 TIGR01369 CPSaseII_lrg carbamo  34.6      27 0.00069   14.0   3.6   19  573-591   596-614 (1089)
319 TIGR01466 cobJ_cbiH precorrin-  34.0      28  0.0007   13.9   3.3   30  556-595   198-227 (254)
320 PRK04965 nitric oxide reductas  33.9      28 0.00071   13.9   5.7   33  548-580   342-375 (378)
321 KOG1250 consensus               33.5      28 0.00072   13.8   7.4   40  490-529   309-349 (457)
322 TIGR00877 purD phosphoribosyla  32.8      29 0.00073   13.8   1.9   62  377-447   222-289 (459)
323 COG5256 TEF1 Translation elong  32.6      29 0.00074   13.7   3.6   41  159-201   110-156 (428)
324 cd02959 ERp19 Endoplasmic reti  32.2      16  0.0004   15.7   0.4   22  235-256     7-28  (117)
325 PRK06847 hypothetical protein;  32.0      30 0.00076   13.7   4.4   18  565-582   297-314 (375)
326 TIGR01420 pilT_fam twitching m  31.8      30 0.00076   13.6   2.8   23  556-578   198-223 (350)
327 TIGR00963 secA preprotein tran  31.6      29 0.00073   13.8   1.7   32  560-592   436-467 (904)
328 PRK05249 soluble pyridine nucl  31.5      30 0.00077   13.6   4.7   14  579-592   364-377 (465)
329 PRK06292 dihydrolipoamide dehy  30.9      31 0.00079   13.5   5.6   11  582-592   363-373 (460)
330 COG1233 Phytoene dehydrogenase  30.7      31 0.00079   13.5   4.5   54   72-132     4-57  (487)
331 PRK11709 putative L-ascorbate   30.4      21 0.00054   14.7   0.9   25  498-522   161-185 (355)
332 KOG0450 consensus               30.3      32 0.00081   13.5   5.9   79  162-243   404-489 (1017)
333 cd06215 FNR_iron_sulfur_bindin  30.3      32 0.00081   13.5   4.9   25  559-583   104-128 (231)
334 PRK08132 hypothetical protein;  30.0      32 0.00081   13.4   4.3   33  559-592   455-487 (549)
335 TIGR02441 fa_ox_alpha_mit fatt  30.0      32 0.00081   13.4   1.9  102  468-591   442-548 (740)
336 PRK10310 galactitol-specific P  30.0      32 0.00081   13.4   6.0   33  561-593     4-40  (94)
337 cd05567 PTS_IIB_mannitol PTS_I  29.9      32 0.00081   13.4   7.1   75  567-655    12-86  (87)
338 cd05566 PTS_IIB_galactitol PTS  29.9      32 0.00081   13.4   3.8   31  562-592     3-37  (89)
339 COG0124 HisS Histidyl-tRNA syn  29.9      32 0.00081   13.4   4.6   43  557-601   334-377 (429)
340 TIGR00874 talAB transaldolase;  29.8      32 0.00082   13.4   1.8   29  224-254    11-40  (324)
341 pfam01918 Alba Alba. Alba is a  29.6      32 0.00083   13.4   4.9   28  556-583    25-52  (67)
342 TIGR02065 ECX1 exosome complex  29.4      28 0.00072   13.8   1.4   13  407-419   108-120 (231)
343 PRK08163 salicylate hydroxylas  29.2      33 0.00084   13.3   4.6   16  566-581   302-317 (396)
344 PRK05976 dihydrolipoamide dehy  29.1      33 0.00084   13.3   5.0   14  579-592   364-377 (464)
345 PRK06416 dihydrolipoamide dehy  28.7      33 0.00085   13.3   4.6   15  579-593   362-376 (462)
346 pfam12500 DUF3706 Protein of u  28.6      34 0.00086   13.3   4.9   41  557-598    99-139 (199)
347 PRK13529 malate dehydrogenase;  28.5      34 0.00086   13.3   5.5   78  496-583   409-497 (563)
348 PRK07308 flavodoxin; Validated  28.4      34 0.00086   13.3   3.9   17  577-593    23-39  (147)
349 pfam04273 DUF442 Putative phos  28.1      34 0.00087   13.2   2.5   45  213-257    48-96  (110)
350 pfam00743 FMO-like Flavin-bind  27.7      35 0.00088   13.2   4.6   14  157-170   104-117 (532)
351 PRK11574 hypothetical protein;  27.5      35 0.00089   13.1   3.4   17  238-254    90-106 (196)
352 TIGR02149 glgA_Coryne glycogen  27.4      35  0.0009   13.1   3.6   38  498-536   197-239 (416)
353 TIGR00580 mfd transcription-re  27.1      36 0.00091   13.1   6.7   45  485-530   681-730 (997)
354 pfam01565 FAD_binding_4 FAD bi  27.0      36 0.00091   13.1   7.0   82  499-587     3-87  (138)
355 cd06451 AGAT_like Alanine-glyo  26.1      37 0.00094   13.0   6.2   28  214-241    89-121 (356)
356 TIGR00464 gltX_bact glutamyl-t  26.0      37 0.00095   13.0   2.8   77  187-263   204-302 (513)
357 COG2873 MET17 O-acetylhomoseri  26.0      34 0.00086   13.3   1.3   26  216-241   120-145 (426)
358 PRK07845 flavoprotein disulfid  26.0      37 0.00095   13.0   5.2   27  558-593   355-381 (467)
359 TIGR00075 hypD hydrogenase exp  25.7      38 0.00096   12.9   8.3   40  161-202   145-185 (384)
360 TIGR03528 2_3_DAP_am_ly diamin  25.6      38 0.00096   12.9   8.0   72  160-247   113-184 (396)
361 TIGR00065 ftsZ cell division p  25.5      38 0.00097   12.9   3.0   15  248-262    68-82  (365)
362 PRK05693 short chain dehydroge  25.5      38 0.00097   12.9   5.0   29  225-253    48-77  (274)
363 PRK06115 dihydrolipoamide dehy  25.3      38 0.00097   12.9   5.5   27  558-593   354-380 (466)
364 PRK03719 ecotin precursor; Pro  25.3      38 0.00096   12.9   1.4   31  193-230    72-102 (167)
365 COG1946 TesB Acyl-CoA thioeste  25.2      38 0.00098   12.9   2.1   30  454-484    89-118 (289)
366 cd06371 PBP1_sensory_GC_DEF_li  24.9      39 0.00099   12.8   3.6   66  161-228    66-137 (382)
367 TIGR01835 HMG-CoA-S_prok hydro  24.8      39 0.00099   12.8   5.6   74  159-243   143-227 (412)
368 PRK02812 ribose-phosphate pyro  24.8      39   0.001   12.8   8.7   92  494-600   177-272 (331)
369 PRK06327 dihydrolipoamide dehy  24.7      39   0.001   12.8   5.4   14  579-592   375-388 (475)
370 PRK07804 L-aspartate oxidase;   24.7      39   0.001   12.8   4.6   16  160-175   163-178 (533)
371 COG1240 ChlD Mg-chelatase subu  24.7      39   0.001   12.8   7.4   25  569-593   197-221 (261)
372 TIGR01326 OAH_OAS_sulfhy O-ace  24.3      35 0.00088   13.2   1.1   26  216-241   115-141 (434)
373 cd01888 eIF2_gamma eIF2-gamma   24.2      40   0.001   12.7   6.3   38  162-201   111-148 (203)
374 cd02960 AGR Anterior Gradient   24.2      36 0.00093   13.0   1.1   23  234-256    10-32  (130)
375 TIGR02886 spore_II_AA anti-sig  24.1      40   0.001   12.7   3.3   70  505-578    22-91  (106)
376 PRK10060 RNase II stability mo  24.1      40   0.001   12.7   6.7   90  570-659   476-578 (663)
377 COG0151 PurD Phosphoribosylami  23.9      40   0.001   12.7   2.7   31  553-583   376-406 (428)
378 TIGR01211 ELP3 histone acetylt  23.9      34 0.00088   13.2   1.0   28  501-530   358-385 (573)
379 pfam00731 AIRC AIR carboxylase  23.8      41   0.001   12.7   7.8   32  562-593     5-38  (150)
380 pfam04395 Poxvirus_B22R Poxvir  23.7      41   0.001   12.7   1.3   12  279-290   377-388 (977)
381 COG0409 HypD Hydrogenase matur  23.6      41   0.001   12.6   7.4   31  164-194   136-167 (364)
382 PRK00054 dihydroorotate dehydr  23.5      41   0.001   12.6   3.4   26  562-588   181-206 (248)
383 PRK13982 bifunctional SbtC-lik  23.5      41   0.001   12.6   7.1   32  561-592   389-421 (476)
384 TIGR01455 glmM phosphoglucosam  23.3      42  0.0011   12.6   7.3   51  130-185    13-64  (450)
385 PRK06467 dihydrolipoamide dehy  23.2      42  0.0011   12.6   5.2   12  581-592   367-378 (472)
386 PRK11829 biofilm formation reg  23.2      42  0.0011   12.6   4.8  177  459-645   404-630 (728)
387 PRK07236 hypothetical protein;  23.1      42  0.0011   12.6   4.5   22  561-582   316-337 (386)
388 TIGR03301 PhnW-AepZ 2-aminoeth  23.0      42  0.0011   12.6   8.2   11  217-227    92-102 (355)
389 COG0654 UbiH 2-polyprenyl-6-me  22.9      42  0.0011   12.6   4.2   15  567-581   295-309 (387)
390 TIGR01501 MthylAspMutase methy  22.8      42  0.0011   12.5   4.9   71  164-242    60-130 (134)
391 PRK13748 putative mercuric red  22.8      42  0.0011   12.5   5.9   32  161-198    99-130 (561)
392 COG0260 PepB Leucyl aminopepti  22.8      42  0.0011   12.5   3.6   35  563-601   378-412 (485)
393 PRK07803 sdhA succinate dehydr  22.6      43  0.0011   12.5   4.3   23  561-583   498-520 (631)
394 TIGR02053 MerA mercuric reduct  22.6      43  0.0011   12.5   4.4   37  635-671   429-469 (494)
395 TIGR02023 BchP-ChlP geranylger  22.5      43  0.0011   12.5   3.6   43  163-212     3-45  (408)
396 PRK05568 flavodoxin; Provision  22.4      43  0.0011   12.5   5.1   26  567-592    13-38  (142)
397 cd04169 RF3 RF3 subfamily.  Pe  22.4      43  0.0011   12.5   5.6   35  159-194    96-130 (267)
398 KOG0460 consensus               22.3      43  0.0011   12.5   5.3   38  158-197   141-179 (449)
399 cd02955 SSP411 TRX domain, SSP  22.3      32 0.00083   13.4   0.6   19  238-256     6-24  (124)
400 PRK08246 threonine dehydratase  22.2      43  0.0011   12.5   7.4   27  214-240   104-130 (307)
401 PRK12815 carB carbamoyl phosph  22.2      43  0.0011   12.5   3.9   19   85-106   319-337 (1068)
402 PRK05452 anaerobic nitric oxid  22.2      44  0.0011   12.5  10.6   23  560-582   372-394 (479)
403 COG1440 CelA Phosphotransferas  22.0      44  0.0011   12.4   3.6   40  558-599    48-88  (102)
404 TIGR02415 23BDH acetoin reduct  21.9      44  0.0011   12.4   3.4   47  192-245    27-75  (258)
405 PRK07334 threonine dehydratase  21.9      44  0.0011   12.4   8.0   28  216-244   108-136 (399)
406 COG1433 Uncharacterized conser  21.8      44  0.0011   12.4   2.1   19  573-591    54-72  (121)
407 cd02953 DsbDgamma DsbD gamma f  21.7      35 0.00089   13.2   0.7   17  238-254     2-18  (104)
408 TIGR03035 trp_arylform arylfor  21.7      44  0.0011   12.4   4.6   48  572-621   124-171 (206)
409 PRK07538 hypothetical protein;  21.6      45  0.0011   12.4   4.1   15  567-581   314-328 (413)
410 PRK05883 acyl carrier protein;  21.5      44  0.0011   12.4   1.2   37   73-110    32-72  (85)
411 PRK07049 methionine gamma-lyas  21.5      45  0.0011   12.4   2.4   79  171-257   104-183 (427)
412 TIGR02810 agaZ_gatZ D-tagatose  21.4      42  0.0011   12.6   1.0   20  236-255    26-45  (430)
413 cd06218 DHOD_e_trans FAD/NAD b  21.1      46  0.0012   12.3   5.1   26  562-588   182-207 (246)
414 PRK11921 metallo-beta-lactamas  21.1      46  0.0012   12.3  11.0   95  560-659   249-362 (395)
415 COG1504 Uncharacterized conser  21.1      46  0.0012   12.3   1.2   37  556-594    59-97  (121)
416 PRK06753 hypothetical protein;  21.0      46  0.0012   12.3   4.1   16  566-581   286-301 (373)
417 cd00242 Ecotin Protease Inhibi  21.0      42  0.0011   12.6   1.0   32  193-231    42-73  (136)
418 TIGR00551 nadB L-aspartate oxi  20.9      46  0.0012   12.3   3.4   92  161-286    26-118 (546)
419 TIGR01394 TypA_BipA GTP-bindin  20.9      42  0.0011   12.6   0.9   36  221-256   171-218 (609)
420 PTZ00336 elongation factor 1-a  20.9      39   0.001   12.8   0.8   37  162-200   113-155 (449)
421 PRK05269 transaldolase B; Prov  20.7      47  0.0012   12.2   2.2   29  224-253    12-40  (320)
422 PRK00711 D-amino acid dehydrog  20.5      47  0.0012   12.2   4.2   21  562-582   374-397 (416)

No 1  
>TIGR00232 tktlase_bact transketolase; InterPro: IPR005478     Transketolase (EC 2.2.1.1) (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor.    This group includes two proteins from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. ; GO: 0004802 transketolase activity.
Probab=100.00  E-value=0  Score=1467.05  Aligned_cols=652  Identities=50%  Similarity=0.854  Sum_probs=628.8

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCC
Q ss_conf             99999999999999997388976431368999999843325445778988788779985652018999999970768899
Q gi|254780655|r   20 KKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYALLYLLGYQDVT   99 (673)
Q Consensus        20 ~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~~~l~G~~~~~   99 (673)
                      +++++.||.|++|+|+||||||||.+||++++.++||..||++||.||+|+||||||||+||+|+++|++|||+|| |+|
T Consensus         1 k~~~~AiR~L~~D~i~kA~SGHPG~plG~Ap~a~vLw~~fl~~NP~nP~W~NRDRFVLS~GHgSmLlYSlLHL~Gy-Dls   79 (675)
T TIGR00232         1 KKLVNAIRFLAVDAIEKAKSGHPGAPLGAAPIAYVLWTKFLKFNPTNPKWINRDRFVLSAGHGSMLLYSLLHLTGY-DLS   79 (675)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-CCC
T ss_conf             9036899986688898706898871312437999998987148321118566503543025899999999998503-666


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC---CCCCCEEEEEECCCCCCCHHH
Q ss_conf             88986400038879889888899873068886314799999999999985342688---767845999843621143445
Q gi|254780655|r  100 IEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGD---VLIDHYTYVLVGDGCLMEGIS  176 (673)
Q Consensus       100 ~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~---~~~d~~v~~iiGDG~l~eG~~  176 (673)
                      +|||++|||++|+||||||+..++|||.|||||||||++|||||+|+|.|++.|++   .++||||||||||||||||++
T Consensus        80 ~EdLk~FRQ~~s~TPGHPE~~~~~Gve~TTGPLGQGianAVGmA~A~~~LAa~fn~~~~~~~DHyTYv~~GDGcLqEGiS  159 (675)
T TIGR00232        80 IEDLKQFRQLHSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAERTLAATFNKPGFEIVDHYTYVIVGDGCLQEGIS  159 (675)
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECEEEEEECCCCCCCCHH
T ss_conf             68882373223017888877788870231187301357799999999999997087969443120789973775566378


Q ss_pred             HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC-CC-CCHHHHHHHHHHHHHCC-CCHHHH
Q ss_conf             5788765220223306999627632232235567821799886414444444-44-40678888888751102-210222
Q gi|254780655|r  177 QEAISFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTLSV-NG-HDHHAITSTLRKAQLSD-KPTMIA  253 (673)
Q Consensus       177 ~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~Gw~~~~v-dG-~d~~~i~~a~~~ak~~~-kP~~I~  253 (673)
                      +|+.++||+++|+|||+|||+|++||||.|+.++.||+.+||+|+||+|+++ || ||+++|.+|+++||.++ |||+|+
T Consensus       160 ~E~asLAG~l~LgkLI~lYDsN~IsiDG~~~~~F~Edv~~RFeA~gW~Vl~~~DG~~D~~~I~~Ai~~Ak~~~dKPTlI~  239 (675)
T TIGR00232       160 YEAASLAGHLKLGKLIVLYDSNRISIDGAVDGSFSEDVKKRFEAYGWEVLEVEDGNHDLEAIAAAIEEAKASKDKPTLIE  239 (675)
T ss_pred             HHHHHHHHHHHCCCEEEEEECCCEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf             99998876632286689973683564343010010014534410585585405745307999999999873078971689


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC-CCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             01334555700047711033437223321256634877785-43897899999-97543335668876424676311111
Q gi|254780655|r  254 CETVIGFGSPNRAGTNKVHGSALGQEEIKATRKALNWDLDP-FFIPDDIMKKW-RLAGLRSSQTRADWQERLSSMKSSIR  331 (673)
Q Consensus       254 ~~T~kG~G~~~~e~~~~~HG~~l~~ee~~~~~k~lg~~~~~-f~ip~~v~~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~  331 (673)
                      |+|+||||+|.++|++..||.||+.+|++.+|++++|++.+ |.||++||++| +....++.+...+|++.+..|+.++|
T Consensus       240 v~T~IGfGsp~~~g~~~~HGapL~~~~~~~~~~~~~~~~~~sF~~P~evyd~~~~~v~e~G~~~~~~Wn~~f~~yk~~yP  319 (675)
T TIGR00232       240 VKTTIGFGSPNKEGTEGVHGAPLGKEEVKLTKKNLGWNYNPSFEVPQEVYDHFKKTVKERGAKAEQEWNELFAKYKKKYP  319 (675)
T ss_pred             EEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98775036877788866788898868999999971888777753765688899999998657799999999999988617


Q ss_pred             ---HCCCCHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf             ---0023001110776302355542000001355431013467888998865543322034555674000266634454-
Q gi|254780655|r  332 ---KEFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISK-  407 (673)
Q Consensus       332 ---~e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vatr~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~-  407 (673)
                         ++|++..++.+|+.|.+.+..+.++....+..+|||++++.+|+.+++.+|+++||||||+.||.|.+++..+|.. 
T Consensus       320 ~~~~~f~~~~~G~lP~~w~~~~~~f~~~~~~NPA~~ATR~~s~~~Ln~~~~~~p~l~GGSADLa~SN~T~~~~~~df~~~  399 (675)
T TIGR00232       320 ELAAEFERRLSGELPADWDKELPEFKVKQKANPAKLATRKYSQEVLNAIANVLPELLGGSADLAPSNLTKLKGSGDFQLH  399 (675)
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCHHHCEEECCCCCCCCC
T ss_conf             89999999843555235886314532231037455888999999999876315201155301110013350476445435


Q ss_pred             ----CCCHHHCCCCCCCHHHHHHHHHHHHHCC-CCCCEECCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCH
Q ss_conf             ----3200100325762002356787998728-87622001003555300124541111000013024543333333310
Q gi|254780655|r  408 ----SDFSGRYLHYGVREHAMAAAMNGIALHK-GLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDGPT  482 (673)
Q Consensus       408 ----~~~p~r~i~~GIaE~~~~~~aaGla~~~-g~~p~~~tf~~F~~~~~~~ir~~al~~~~v~~v~th~gi~~G~DGpT  482 (673)
                          .+|.||||.+||||++|.+|+||||+|| |++||++||++|.+|++++|||+|||++||+||+|||||+|||||||
T Consensus       400 ~~~~~n~~GrYi~~GvREfaMgAI~NGiAlhGag~~p~GgTFL~F~dY~~~AiRLaALm~~~~~~V~THDSIgvGEDGPT  479 (675)
T TIGR00232       400 ENPLGNYAGRYIHYGVREFAMGAIMNGIALHGAGFKPYGGTFLVFVDYARPAIRLAALMKLPVIYVYTHDSIGVGEDGPT  479 (675)
T ss_pred             CCCCCCCCCCEEEEEEEECHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECCCCCCCC
T ss_conf             24442346754887323044789999999835886325414678998655899999971789089997440113878884


Q ss_pred             HHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHC--CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCC-C
Q ss_conf             100022210111012211211201245777765202--5678349995244443345665532212347379985699-7
Q gi|254780655|r  483 HQPVEHLAALRAIPDLLVLRPADSIETLECWQVALK--EKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTPN-A  559 (673)
Q Consensus       483 Hq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~--~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~~-~  559 (673)
                      |||||+|++||.||||.||||||.+|+..+|+.|++  +.++|++|.|+||++|.++......+.+.+|+|++..+++ +
T Consensus       480 HQP~EqLa~LRa~PN~~vwRP~D~~E~aaa~~~a~~kas~~~Pt~L~LtRQnLp~l~~T~~~~~~~~KGgYv~~d~~~~P  559 (675)
T TIGR00232       480 HQPIEQLASLRAIPNLSVWRPADGNETAAAYKYALEKASQDAPTVLILTRQNLPQLERTESSLEKVLKGGYVLKDSKGEP  559 (675)
T ss_pred             CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCEEECCCCCC
T ss_conf             77022302332203531623787327899999999962058980799805777776642789998633980787258794


Q ss_pred             CEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCCCCCE-EEEECCCCHHHHHHHHCCCC--C
Q ss_conf             29999526889999999999997399439985746581000868899964367977-99972860278999845798--1
Q gi|254780655|r  560 QVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGSSPI-KIAIEAGLRQGWDAFIGSDG--S  636 (673)
Q Consensus       560 dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~-~vtiE~g~~~g~~~~~~~~~--~  636 (673)
                      |++||||||+|++|+++++.|.+++|++|||||||+..|++|+.+|+++||+.... +|+||.+....|++|++..+  .
T Consensus       560 d~iliAtGSEV~La~~a~~~L~~~~~kvrVVS~P~~~~f~~Qd~~Y~~svlp~~V~k~~~~Ea~~~~~Wyky~~~~g~H~  639 (675)
T TIGR00232       560 DIILIATGSEVQLAVEAAKKLAAENIKVRVVSMPSFDLFDKQDEEYRESVLPANVTKRLAIEASAAFEWYKYAGLEGKHA  639 (675)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHCCCHHHCCCCCCEE
T ss_conf             08998527368999999999985498579996586466661228988730720123546653475301111115456400


Q ss_pred             EEEECCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf             898357767688889999809998999999999848
Q gi|254780655|r  637 FIGMQGFGASGSCDLLYQHFGINAIAIVDMVERKLS  672 (673)
Q Consensus       637 ~igid~Fg~sg~~~el~~~~Gld~~~I~~~i~~~L~  672 (673)
                      .+|+++||+|++.++|+++||+++++|+++++++|+
T Consensus       640 ~~G~~~FG~Sa~g~~~~~~fGF~v~nv~~~ak~l~n  675 (675)
T TIGR00232       640 VLGIDSFGESAPGDKVFEKFGFTVENVVAKAKKLLN  675 (675)
T ss_pred             EECCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf             551203688785004754148887899999999609


No 2  
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=100.00  E-value=0  Score=1383.19  Aligned_cols=651  Identities=53%  Similarity=0.886  Sum_probs=623.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHCC
Q ss_conf             88899999999999999999973889764313689999998433254457789887887799856520189999999707
Q gi|254780655|r   15 YDDDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYALLYLLG   94 (673)
Q Consensus        15 ~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~~~l~G   94 (673)
                      ..+.++++++.||.+++|+|++|||||||++||+++|.++||.++|+|||+||+|+||||||||+||+|+++|+++||+|
T Consensus         2 ~~~~~~~~~naiR~Ls~davqkAnSGHPG~pmG~A~ia~~L~~~~l~~nP~nP~W~nRDRFVLSaGHgSmllYsllhl~G   81 (663)
T COG0021           2 MMKIDKLLANAIRFLSMDAVQKANSGHPGAPMGAADIAYVLWTRFLKHNPDNPKWINRDRFVLSAGHGSMLLYSLLHLTG   81 (663)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCC
T ss_conf             41579999999999999999751389898775488999999998741799999977876278607740599999999806


Q ss_pred             CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCEEEEEECCCCC
Q ss_conf             68899889864000388798898888998730688863147999999999999853426---887678459998436211
Q gi|254780655|r   95 YQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEF---GDVLIDHYTYVLVGDGCL  171 (673)
Q Consensus        95 ~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~---~~~~~d~~v~~iiGDG~l  171 (673)
                      | |+++|||++|||++|+||||||+.++||||+|||||||||++|||||+|+|+|+++|   +.+++||+|||++|||||
T Consensus        82 y-~ls~edLk~FRQ~~SkTpGHPE~~~t~gVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGcl  160 (663)
T COG0021          82 Y-DLSLEDLKNFRQLGSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCL  160 (663)
T ss_pred             C-CCCHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHH
T ss_conf             8-887999985045789999998768989857156763015888999999999998761778886434328999747357


Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHH-CCCC
Q ss_conf             4344557887652202233069996276322322355678217998864144444-4444406788888887511-0221
Q gi|254780655|r  172 MEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTL-SVNGHDHHAITSTLRKAQL-SDKP  249 (673)
Q Consensus       172 ~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~Gw~~~-~vdG~d~~~i~~a~~~ak~-~~kP  249 (673)
                      |||+++||.++||++||+|||+|+|+|++||||.++..+++|+++||+|+||+|+ .+||||+++|.+|+++||. ++||
T Consensus       161 mEGvs~EA~slAG~l~L~kLIvlyD~N~IsiDG~~~~~f~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~~~dkP  240 (663)
T COG0021         161 MEGVSHEAASLAGHLKLGKLIVLYDSNDISIDGDTSLSFTEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKASTDKP  240 (663)
T ss_pred             HCCCHHHHHHHHHHCCCCCEEEEEECCCCEECCCCCCCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             51618999988734477868999937984232675555536699999854986986018889999999999997467997


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             02220133455570004771103343722332125663487778543897899999975433356688764246763111
Q gi|254780655|r  250 TMIACETVIGFGSPNRAGTNKVHGSALGQEEIKATRKALNWDLDPFFIPDDIMKKWRLAGLRSSQTRADWQERLSSMKSS  329 (673)
Q Consensus       250 ~~I~~~T~kG~G~~~~e~~~~~HG~~l~~ee~~~~~k~lg~~~~~f~ip~~v~~~~~~~~~~~~~~~~~w~~~~~~~~~~  329 (673)
                      |+|+|+|+||+|+|++||++++||+||++|+++.+|++|+|+.++|+||++|++.|+....++.+.+.+|++++..|.+.
T Consensus       241 tlI~~kTiIG~Gsp~kegt~~~HGapLg~~ev~~~k~~lgw~~~~F~vp~ev~~~~~~~~~~g~~~~~~W~~~~~~y~~~  320 (663)
T COG0021         241 TLIIVKTIIGKGSPNKEGTHKVHGAPLGEEEVAAAKKALGWEPEPFEVPEEVYAAFRAVEERGAKAEAAWNELFAAYKKK  320 (663)
T ss_pred             EEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             38999866405888768876545788887999999998489987544589999999987654356788999999998765


Q ss_pred             HH---HCCCCHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             11---002300111077630235554200000135543101346788899886554332203455567400026663445
Q gi|254780655|r  330 IR---KEFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAIS  406 (673)
Q Consensus       330 ~~---~e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vatr~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~  406 (673)
                      +|   +++.+.+++.+|..|..    ..+.+......+|||++++++|+++++.+|++++|||||++||+|.+++...+.
T Consensus       321 ~Pe~~~~~~r~~~~~~p~~~~~----~~~~~~~~~~~~ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~  396 (663)
T COG0021         321 YPELAAEFERRLNGELPANWAA----FLPKFEANGKSIATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFS  396 (663)
T ss_pred             CHHHHHHHHHHHCCCCCHHHHH----HHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             8478999999853547345787----625522566552338999999999975473434667202667643014667778


Q ss_pred             CCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHC
Q ss_conf             43200100325762002356787998728876220010035553001245411110000130245433333333101000
Q gi|254780655|r  407 KSDFSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDGPTHQPV  486 (673)
Q Consensus       407 ~~~~p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~tf~~F~~~~~~~ir~~al~~~~v~~v~th~gi~~G~DGpTHq~i  486 (673)
                      +++|++|||.+||||++|+++++|||+|||++||.+||++|++|++++|||+|||++|++||+|||||+||||||||||+
T Consensus       397 ~~~~~gr~i~~GVREf~M~AimNGialhGg~~pyggTFlvFsdY~r~AiRlaALm~l~~~~V~THDSIgvGEDGPTHqPi  476 (663)
T COG0021         397 PENYAGRYIHFGVREFAMAAIMNGIALHGGFIPYGGTFLVFSDYARPAVRLAALMGLPVIYVFTHDSIGVGEDGPTHQPV  476 (663)
T ss_pred             CCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCEEECCEEHHHHHHHHHHHHHHHHHCCCEEEEEECCCEECCCCCCCCCCH
T ss_conf             77878870588558877999987688746862222034021753358799998608981899946712207878877768


Q ss_pred             CCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECC--CCCEEEE
Q ss_conf             22210111012211211201245777765202567834999524444334566553221234737998569--9729999
Q gi|254780655|r  487 EHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTP--NAQVTIF  564 (673)
Q Consensus       487 edia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~--~~dv~ii  564 (673)
                      |+|+.||+|||+.|++|||++|+..+|+.|++++++|++|+++||++|.++...  .+.+.+|+|++...+  ++|++||
T Consensus       477 EqLa~LRaiPN~~V~RPaD~~Et~~aw~~Al~~~~gPt~LiltRQnlp~l~~t~--~~~~~kGaYvl~~~~~~~pd~ili  554 (663)
T COG0021         477 EQLASLRAIPNLSVIRPADANETAAAWKYALERKDGPTALILTRQNLPVLERTD--LEGVAKGAYVLKDSGGEDPDVILI  554 (663)
T ss_pred             HHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC--CCCCCCCCEEEEECCCCCCCEEEE
T ss_conf             888886526886047328837899999999856789869999667776657775--221257527984057789988999


Q ss_pred             ECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCCCCCE-EEEECCCCHHHHHHHHCCCCCEEEECCC
Q ss_conf             526889999999999997399439985746581000868899964367977-9997286027899984579818983577
Q gi|254780655|r  565 SSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGSSPI-KIAIEAGLRQGWDAFIGSDGSFIGMQGF  643 (673)
Q Consensus       565 a~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~-~vtiE~g~~~g~~~~~~~~~~~igid~F  643 (673)
                      ++||+|++|++|++.|+++|+.+|||||||+++|++|+.+|++++|+.... .|+||.|...+|++|++.++.+|||++|
T Consensus       555 AtGSEV~lAv~Aa~~L~~~~i~vrVVS~P~~~~fe~Q~~~Y~~~vL~~~v~~rvaiEa~~~~~W~ky~g~~g~~ig~~~F  634 (663)
T COG0021         555 ATGSEVELAVEAAKELEAEGIKVRVVSMPSFELFEKQDEEYRESVLPGAVTARVAIEAGSALGWYKYVGLDGAVIGMDSF  634 (663)
T ss_pred             ECCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHCCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHCCCCCCEEEECCC
T ss_conf             46659999999999998659816999466558887089988776456776643888732236636541888728842567


Q ss_pred             CCCCCHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf             67688889999809998999999999848
Q gi|254780655|r  644 GASGSCDLLYQHFGINAIAIVDMVERKLS  672 (673)
Q Consensus       644 g~sg~~~el~~~~Gld~~~I~~~i~~~L~  672 (673)
                      |.||+.++|+++||||+++|+++++++|+
T Consensus       635 G~Sap~~~l~~~fGft~e~vv~~~~~~l~  663 (663)
T COG0021         635 GASAPGDELFKEFGFTVENVVAKAKSLLN  663 (663)
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf             67898789999959999999999999649


No 3  
>PTZ00089 transketolase; Provisional
Probab=100.00  E-value=0  Score=1331.15  Aligned_cols=647  Identities=37%  Similarity=0.641  Sum_probs=605.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHCC
Q ss_conf             88899999999999999999973889764313689999998433254457789887887799856520189999999707
Q gi|254780655|r   15 YDDDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYALLYLLG   94 (673)
Q Consensus        15 ~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~~~l~G   94 (673)
                      ++++.+++++.||.|++|||++|||||||++||++||+++||.++|+|||+||+|+||||||||+||+||++|++|+|+|
T Consensus         2 ~~~i~~~~~~~ir~l~~d~v~~a~sGHpG~~l~~a~i~~~L~~~~l~~~p~~p~w~~RDrfvlS~GH~s~~lY~~l~l~g   81 (670)
T PTZ00089          2 DGEIDEKCINEIRMLSAELPLEAKSGHQGAPIGCAPIAHILWAYVMNYYNEDTKWINRDRFILSNGHASALLYTMLYLTE   81 (670)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf             71789999999999999999971899986136799999999998603398894999998699755127799999999815


Q ss_pred             CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC---CCCCCEEEEEECCCCC
Q ss_conf             6889988986400038879889888899873068886314799999999999985342688---7678459998436211
Q gi|254780655|r   95 YQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGD---VLIDHYTYVLVGDGCL  171 (673)
Q Consensus        95 ~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~---~~~d~~v~~iiGDG~l  171 (673)
                      + ++++|+|++||+++|+||||||+..+||||++|||||||+|+|||||+|+|.++.+++.   +++||||||++|||||
T Consensus        82 ~-~~~~e~l~~fr~~~s~~~gHpe~~~~~gve~ttG~LGqG~~~avGmAla~~~l~~~~~~~~~~i~d~~vy~l~GDG~l  160 (670)
T PTZ00089         82 Q-GLSMEDLKNFRQFESLTPGHPEKHITKGVEVTTGPLGQGASNAVGMAIAAHNLADKYNTEEFKIFDNYVYAICGDGCM  160 (670)
T ss_pred             C-CCCHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCC
T ss_conf             9-999999997454799999999999998802588871878999999999999987561877666546339999777543


Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC-CCC-CHHHHHHHHHHHHHC-CC
Q ss_conf             434455788765220223306999627632232235567821799886414444444-444-067888888875110-22
Q gi|254780655|r  172 MEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTLSV-NGH-DHHAITSTLRKAQLS-DK  248 (673)
Q Consensus       172 ~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~Gw~~~~v-dG~-d~~~i~~a~~~ak~~-~k  248 (673)
                      |||++|||+++||++||+|||+|+|+|++||||+++..+.+|+.+||+++||+|++| ||| |+++|.+|+++|+.. +|
T Consensus       161 ~EG~~~EA~~~Ag~~~L~nLi~i~D~N~i~idg~~~~~~~~d~~~r~~a~gW~v~~v~~g~~d~~~i~~ai~~Ak~~~~k  240 (670)
T PTZ00089        161 QEGVFCEAASLAGHLGLGRLILLYDDNKITIDGNTDLSFTEDIEKKFEALKWEVRKVEDGNKDFAGILHEIEEAKKNLKQ  240 (670)
T ss_pred             CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             45899999998646289988999917721146885436566599999980771343366777999999999999855899


Q ss_pred             CHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1022201334555700047711033437223321256634877-785438978999999754333566887642467631
Q gi|254780655|r  249 PTMIACETVIGFGSPNRAGTNKVHGSALGQEEIKATRKALNWD-LDPFFIPDDIMKKWRLAGLRSSQTRADWQERLSSMK  327 (673)
Q Consensus       249 P~~I~~~T~kG~G~~~~e~~~~~HG~~l~~ee~~~~~k~lg~~-~~~f~ip~~v~~~~~~~~~~~~~~~~~w~~~~~~~~  327 (673)
                      |++|+++|+||+|.+ +||++++||.||++|++..+|+.+||+ .++|++|++|+++|+....++.+.+.+|++.+..|.
T Consensus       241 PtlI~~~T~iG~Gs~-~eGt~~~HG~pLg~eei~~~K~~lG~~p~~~F~ip~~V~~~~~~~~~k~~~~~~~W~~~~~~~~  319 (670)
T PTZ00089        241 PSLIIVQTACGFGTK-VEGTCKSHGLALKDEDLKKAKEFFGLDPEKKFHISDEVKEFYENIIEKKKENYIKWKKMFCDFS  319 (670)
T ss_pred             CEEEEEEEEECCCCC-CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             848996422246557-6787553588777699999999739995557789789999999999878999999999999999


Q ss_pred             HHHH---HCCCCHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             1111---0023001110776302355542000001355431013467888998865543322034555674000266634
Q gi|254780655|r  328 SSIR---KEFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKA  404 (673)
Q Consensus       328 ~~~~---~e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vatr~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~  404 (673)
                      .+++   .++.+.+++.+|..|...+..    +.......|||++++.+|+.+++.+|++++|||||++||+|.++....
T Consensus       320 ~~~p~~~~e~~~~~~~~lp~~~~~~lp~----~~~~d~~~ATR~asg~~L~~l~~~~p~ligGSADL~~Sn~T~l~~~~~  395 (670)
T PTZ00089        320 LKYPETAQEIIRRFQKDLPHNWKDALPK----YTPKDAPGATRNLSGIALNCINKIFPELIGGSADLSESNCTALKEEKD  395 (670)
T ss_pred             HHCHHHHHHHHHHHHCCCCHHHHHHHHH----HCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf             8777889999998751074569997786----253677531799999999999752885499746656786544446777


Q ss_pred             CCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHH
Q ss_conf             45432001003257620023567879987288762200100355530012454111100001302454333333331010
Q gi|254780655|r  405 ISKSDFSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDGPTHQ  484 (673)
Q Consensus       405 ~~~~~~p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~tf~~F~~~~~~~ir~~al~~~~v~~v~th~gi~~G~DGpTHq  484 (673)
                      |.+++|++|||+||||||+|+++++|||+|+|++||++||++|+||||+||||+|||++|++||+||||++|||||||||
T Consensus       396 ~~~~~~~gr~I~~GIREhaM~ai~NGialhgG~~P~~aTFlvFsdy~~~aiRlaAL~~l~vi~v~THDSi~vGEDGPTHQ  475 (670)
T PTZ00089        396 IKKDSFANKYIRFGVREHGMVAITNGISAYGGFEPFCATFLNFYTYAFGALRLAALSNHHIFCIATHDSVELGEDGPTHQ  475 (670)
T ss_pred             CCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEECCCCCCCC
T ss_conf             77778788567862078779999999997389824763089999997768888887568748999625611447788666


Q ss_pred             HCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEE----CCCCC
Q ss_conf             00222101110122112112012457777652025678349995244443345665532212347379985----69972
Q gi|254780655|r  485 PVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYIS----TPNAQ  560 (673)
Q Consensus       485 ~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~----~~~~d  560 (673)
                      |||||++||+||||.|++|||++|+..+|++|+++.++|++|+++||++|.+...  ..+.+.+|+|++..    .+.+|
T Consensus       476 pvE~La~LR~iPnl~V~RPaD~~Et~~aw~~al~~~~~P~~l~lsRq~lp~l~~~--~~~~~~~GaYi~~d~~~~~~~~~  553 (670)
T PTZ00089        476 PIEVLALLRATPNLNIIRPADGNEVSGAYLCHFKNLHTPTLIALCRNKVPHLKNT--QAEQVLKGAYILEDFDNSNDKPK  553 (670)
T ss_pred             CHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC--CHHHCCCCCEEEEECCCCCCCCC
T ss_conf             6899999870899679840888999999999986779987999716778776766--44333577789875546689988


Q ss_pred             EEEEECCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCHHCCCCHHHHHHHCCC---CCEEEEECCCCHHHHHHHHCCCCC
Q ss_conf             99995268899999999999973-99439985746581000868899964367---977999728602789998457981
Q gi|254780655|r  561 VTIFSSGSELKIAVEACEILSSR-NISTRVVSVPCFELFFEQSDSYRAQIIGS---SPIKIAIEAGLRQGWDAFIGSDGS  636 (673)
Q Consensus       561 v~iia~G~~v~~al~aa~~L~~~-Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~---~~~~vtiE~g~~~g~~~~~~~~~~  636 (673)
                      |+|+|+|++|+.|++|+++|+++ ||+++||||||+++|++|+.+|+.++|+.   ..+.|+||.+...+|.+|++   .
T Consensus       554 iiliatGSEV~lA~~aa~~L~~~~gi~vrVVSmP~~elF~~Q~~~y~~~vl~~~~~~~~~v~iEa~~~~gw~~~~~---~  630 (670)
T PTZ00089        554 VILAGCGSELHLCFEAKEILKEQHNLNVRIVSFPSWNLFKKQPEDYQQSVMMHHDAKLPRFYIEPASTHGFDTYFN---V  630 (670)
T ss_pred             EEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCC---E
T ss_conf             8999652899999999999855339827999688759998457999986277789984279998244568488759---8


Q ss_pred             EEEECCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf             898357767688889999809998999999999848
Q gi|254780655|r  637 FIGMQGFGASGSCDLLYQHFGINAIAIVDMVERKLS  672 (673)
Q Consensus       637 ~igid~Fg~sg~~~el~~~~Gld~~~I~~~i~~~L~  672 (673)
                      .+|||+||.|||.++|+++||||+++|+++|+++|+
T Consensus       631 ~iGi~~FG~Sap~~~l~~~fG~t~e~I~~~i~~~l~  666 (670)
T PTZ00089        631 YIGINQFGYSAPKNKIWEHLGFTPENIVQKVLAFIE  666 (670)
T ss_pred             EECCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             963487778899899999959899999999999998


No 4  
>PRK12753 transketolase; Reviewed
Probab=100.00  E-value=0  Score=1324.65  Aligned_cols=650  Identities=47%  Similarity=0.809  Sum_probs=611.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCC
Q ss_conf             99999999999999999738897643136899999984332544577898878877998565201899999997076889
Q gi|254780655|r   19 YKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYALLYLLGYQDV   98 (673)
Q Consensus        19 l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~~~l~G~~~~   98 (673)
                      .+++|++||+++++||++|||||||++||++||+++||.++|+|||+||+|++|||||||+||+||++|++|+|+||+ +
T Consensus         3 ~~~~a~~iR~l~~~~v~~a~sGHpg~~l~~a~i~~~L~~~~~~~~p~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~~-~   81 (662)
T PRK12753          3 RKDLANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWRDFLKHNPTNPTWYDRDRFILSNGHASMLLYSLLHLTGYD-L   81 (662)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCC-C
T ss_conf             799999999999999997389985212679999999999861269889599888869986754029999999981899-9


Q ss_pred             CHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC---CCCCCEEEEEECCCCCCCHH
Q ss_conf             988986400038879889888899873068886314799999999999985342688---76784599984362114344
Q gi|254780655|r   99 TIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGD---VLIDHYTYVLVGDGCLMEGI  175 (673)
Q Consensus        99 ~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~---~~~d~~v~~iiGDG~l~eG~  175 (673)
                      ++|+|++||+++|++|||||++++||||++|||||||+|+|+|||+|+|++++++++   .++||+|||+||||||+||+
T Consensus        82 ~~~~l~~fr~~~s~~~Ghpe~~~~pgve~~tG~lGqGls~a~GmA~a~~~l~~~~n~~~~~~~d~~vy~l~GDG~l~eG~  161 (662)
T PRK12753         82 PIEELKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPDHEIVDHYTYVFMGDGCLMEGI  161 (662)
T ss_pred             CHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHH
T ss_conf             99999975067999999998799998444888718889999999999999766527787655475499997554000479


Q ss_pred             HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHH-CCCCHHHH
Q ss_conf             557887652202233069996276322322355678217998864144444-4444406788888887511-02210222
Q gi|254780655|r  176 SQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTL-SVNGHDHHAITSTLRKAQL-SDKPTMIA  253 (673)
Q Consensus       176 ~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~Gw~~~-~vdG~d~~~i~~a~~~ak~-~~kP~~I~  253 (673)
                      +|||+++||++||+|||+|+|+|+|||||+++..+++|+.+||+++||+|+ .|||||+++|.+|+++|+. .+||++|+
T Consensus       162 ~~EA~~~Ag~~~L~nLivi~D~N~isidg~~~~~~~~~~~~rf~a~gw~vi~~idGhd~~~i~~Al~~A~~~~~kPtlI~  241 (662)
T PRK12753        162 SHEVCSLAGTLGLGKLIGFYDHNGISIDGEVEGWFTDDTAKRFEAYGWHVIHDIDGHDPQAIKEAILEAQSVKDKPSLII  241 (662)
T ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEECHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             99999988760888689998089884677721001366899999649769981488777999999999887269985999


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_conf             013345557000477110334372233212566348777854389789999997543335668876424676311111--
Q gi|254780655|r  254 CETVIGFGSPNRAGTNKVHGSALGQEEIKATRKALNWDLDPFFIPDDIMKKWRLAGLRSSQTRADWQERLSSMKSSIR--  331 (673)
Q Consensus       254 ~~T~kG~G~~~~e~~~~~HG~~l~~ee~~~~~k~lg~~~~~f~ip~~v~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~--  331 (673)
                      ++|+||||+|++||++++||.||+.||+..+|++|+|+.++|++|++|+++|.. ..++....+.|++++..|....|  
T Consensus       242 ~kT~IG~GsP~~eG~~~~HG~PLg~eei~~~k~~lg~~~~~F~vp~~v~~~~~~-~~~g~~~~~~w~~~~~~~~~~~P~~  320 (662)
T PRK12753        242 CRTIIGFGSPNKAGKEESHGAPLGEEEVALTRQKLGWHHPPFEIPKEIYAAWDA-REKGEKAEQAWNEKFAAYKKAYPEL  320 (662)
T ss_pred             EECCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCHHH
T ss_conf             854345577132024433677664789999998718998877588999988888-7632778999999999987548577


Q ss_pred             -HCCCCHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             -0023001110776302355542000001355431013467888998865543322034555674000266634454320
Q gi|254780655|r  332 -KEFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDF  410 (673)
Q Consensus       332 -~e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vatr~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~  410 (673)
                       .++.+..++.+|..|...+.............+|||++++.+|+.+++.+|+++++||||++||.+...+...| +++|
T Consensus       321 ~~~~~~~~~~~lp~~~~~~~~~~i~~~~~~~~~iAtR~a~g~~L~~l~~~~p~liggsADL~~S~~t~~~~~~~f-~~~~  399 (662)
T PRK12753        321 AAEFTRRMSGGLPKDWEKKTQKYINELQANPAKIATRKASQNTLEAYGPLLPELLGGSADLAPSNLTIWSGSKSL-KEDP  399 (662)
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCC-CCCC
T ss_conf             899999864899821788899988876305654216665689999999758123067664366554314677433-4378


Q ss_pred             HHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHCCCCC
Q ss_conf             01003257620023567879987288762200100355530012454111100001302454333333331010002221
Q gi|254780655|r  411 SGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHLA  490 (673)
Q Consensus       411 p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~tf~~F~~~~~~~ir~~al~~~~v~~v~th~gi~~G~DGpTHq~iedia  490 (673)
                      |+|||++|||||+|+++|+|||+++|++||++||++|++|++||||++++|++|+++|+||||+++|||||||||+||++
T Consensus       400 ~gr~~~~GI~E~~m~~~a~Gla~~ggl~P~~~tf~~F~~~~~~~ir~~a~~~~~~i~v~Thd~i~vGeDGpTHQ~ie~la  479 (662)
T PRK12753        400 AGNYIHYGVREFGMTAIANGIAHHGGFVPYTATFLMFVEYARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQPVEQLA  479 (662)
T ss_pred             CCCEEEECHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHH
T ss_conf             97626612578879999989987289748876599999986899999987258827999535540468876533078999


Q ss_pred             HHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCC-CCEEEEECCHH
Q ss_conf             01110122112112012457777652025678349995244443345665532212347379985699-72999952688
Q gi|254780655|r  491 ALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTPN-AQVTIFSSGSE  569 (673)
Q Consensus       491 ~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~~-~dv~iia~G~~  569 (673)
                      +||+||||+|++|||++|++.+|++|++..+||+|||++||++|.++...+....+.+|+|.+...++ +||+||++|+|
T Consensus       480 ~lR~iPn~~v~~PaD~~E~~~a~~~a~~~~~gP~~l~l~R~~~~~~~~~~~~~~~~~~G~yil~~~~~~pdv~iiatGs~  559 (662)
T PRK12753        480 SLRLTPNFSTWRPCDQVEAAVAWKLAIERHNGPTALILSRQNLAQVERTPEQVKNIARGGYILKDSGGKPDLILIATGSE  559 (662)
T ss_pred             HHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHCCCCEEEEEEECCCCCCEEEEECCHH
T ss_conf             99855587799318889999999999962589749998578778768871113215652599950599998999963099


Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCCCCC-EEEEECCCCHHHHHHHHCCCCCEEEECCCCCCCC
Q ss_conf             999999999999739943998574658100086889996436797-7999728602789998457981898357767688
Q gi|254780655|r  570 LKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGSSP-IKIAIEAGLRQGWDAFIGSDGSFIGMQGFGASGS  648 (673)
Q Consensus       570 v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~-~~vtiE~g~~~g~~~~~~~~~~~igid~Fg~sg~  648 (673)
                      |++|++||++|+++||+++|||+||++|||+|..+|++++++... ..++||+|++.+|.+|++..+.++|||+||+||+
T Consensus       560 v~~Al~Aa~~L~~~gi~~~Vvs~~s~~~~d~q~~~~~~~vl~~~~~~~~~vEag~~~~w~~~~g~~~~~iGid~FG~Sg~  639 (662)
T PRK12753        560 VEITLQAAEKLTGEGRNVRVVSMPSTDIFDAQDEAYRESVLPSNVTARVAVEAGIADYWYKYVGLKGAIIGMTGFGESAP  639 (662)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCHHHHHHHCCCCCCEEEEEECCCCCHHHHHCCCCCEEEECCCCCCCCC
T ss_conf             99999999999967997899978985487736099997306766754799964740049998089985986688789999


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             88999980999899999999984
Q gi|254780655|r  649 CDLLYQHFGINAIAIVDMVERKL  671 (673)
Q Consensus       649 ~~el~~~~Gld~~~I~~~i~~~L  671 (673)
                      +++|+++||||+++|+++|+++|
T Consensus       640 ~~~L~~~~Glt~e~I~~~~k~~L  662 (662)
T PRK12753        640 ADKLFPFFGFTVENIVAKAKKLL  662 (662)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHC
T ss_conf             99999984989999999999659


No 5  
>PRK12754 transketolase; Reviewed
Probab=100.00  E-value=0  Score=1314.58  Aligned_cols=651  Identities=45%  Similarity=0.797  Sum_probs=610.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCC
Q ss_conf             99999999999999999973889764313689999998433254457789887887799856520189999999707688
Q gi|254780655|r   18 DYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYALLYLLGYQD   97 (673)
Q Consensus        18 ~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~~~l~G~~~   97 (673)
                      ..+|||++||.+++++|++|||||||++||+|||+++||+++|++||++|+|++|||||||+|||||++|++|+|+||+ 
T Consensus         3 ~~~~lA~~iR~l~id~v~~a~~GH~g~~lg~~el~~~L~~~~~~~~p~~p~~~~rDr~v~s~GH~s~~~Y~~l~l~G~~-   81 (663)
T PRK12754          3 SRKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLNHNPTNPSWADRDRFVLSNGHGSMLIYSLLHLTGYD-   81 (663)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCC-
T ss_conf             5999999999999999975389877500679999999999985479789998789849986753027999999981889-


Q ss_pred             CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCEEEEEECCCCCCCH
Q ss_conf             998898640003887988988889987306888631479999999999998534268---87678459998436211434
Q gi|254780655|r   98 VTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFG---DVLIDHYTYVLVGDGCLMEG  174 (673)
Q Consensus        98 ~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~---~~~~d~~v~~iiGDG~l~eG  174 (673)
                      +++|+|++||+++|++|||||+.++||||++|||||||||+|+|||+|+|.++++++   ++++|||||||||||||+||
T Consensus        82 ~~~~~l~~fr~~~s~~~Ghpe~~~~~gve~~tG~lGqgis~a~G~A~a~~~l~~~~~~~~~~~~d~~v~~viGDG~l~eG  161 (663)
T PRK12754         82 LPMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEG  161 (663)
T ss_pred             CCHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHCH
T ss_conf             97999997268999999999879999945587880889999999999999976552768765547618999754501058


Q ss_pred             HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC-CCCCCHHHHHHHHHHHHH-CCCCHHH
Q ss_conf             45578876522022330699962763223223556782179988641444444-444406788888887511-0221022
Q gi|254780655|r  175 ISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTLS-VNGHDHHAITSTLRKAQL-SDKPTMI  252 (673)
Q Consensus       175 ~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~Gw~~~~-vdG~d~~~i~~a~~~ak~-~~kP~~I  252 (673)
                      ++|||+|+||+++|+|||+|+|||+||||++++..+++++..||+++||+|++ +||||+++|.+|+++|+. .+||++|
T Consensus       162 ~a~EAl~~Ag~~~l~nLivi~ddN~~sI~g~v~~~~sed~~~RfeA~GW~vi~~idGhd~~~I~~Al~~A~~~~~kPtlI  241 (663)
T PRK12754        162 ISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWFTDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARAVTDKPSLL  241 (663)
T ss_pred             HHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf             99999997451677878999878877557654445204589999861840674458778999999999998606998488


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_conf             201334555700047711033437223321256634877785438978999999754333566887642467631111--
Q gi|254780655|r  253 ACETVIGFGSPNRAGTNKVHGSALGQEEIKATRKALNWDLDPFFIPDDIMKKWRLAGLRSSQTRADWQERLSSMKSSI--  330 (673)
Q Consensus       253 ~~~T~kG~G~~~~e~~~~~HG~~l~~ee~~~~~k~lg~~~~~f~ip~~v~~~~~~~~~~~~~~~~~w~~~~~~~~~~~--  330 (673)
                      +++|+||+|+|+++|++++||.||+.+++..+|++|||+.++|++|++++..|+. ..++......|++++..+....  
T Consensus       242 ~~kTviG~G~p~~~g~~~~HG~pl~~~ei~~~k~~lG~~~~~f~ip~~v~~~~~~-~~~g~~~~~~w~~~~~~~~~~~P~  320 (663)
T PRK12754        242 MCKTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWDA-KEAGQAKESAWNEKFAAYAKAYPQ  320 (663)
T ss_pred             EEECCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCHH
T ss_conf             8641125588653555121276666778999999819987776575899987768-886689999889999987652818


Q ss_pred             -HHCCCCHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             -1002300111077630235554200000135543101346788899886554332203455567400026663445432
Q gi|254780655|r  331 -RKEFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSD  409 (673)
Q Consensus       331 -~~e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vatr~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~  409 (673)
                       ..++.+...+.+|..|.........++......+|||++++.+|+.+++.+|+++++||||++||.+...+... ++++
T Consensus       321 ~~~~~~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~atr~a~~~~l~~~~~~~p~liggsADL~~st~t~~~g~~~-f~~~  399 (663)
T PRK12754        321 EAAEFTRRMKGEMPADFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKA-INED  399 (663)
T ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-CCHH
T ss_conf             899999985488970046668888876403765543243118699999986377725672225543333357743-2200


Q ss_pred             CHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHCCCC
Q ss_conf             00100325762002356787998728876220010035553001245411110000130245433333333101000222
Q gi|254780655|r  410 FSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHL  489 (673)
Q Consensus       410 ~p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~tf~~F~~~~~~~ir~~al~~~~v~~v~th~gi~~G~DGpTHq~iedi  489 (673)
                      ||+|||+||||||||+++|+|||+++|++||++||++|+||||||||++++|+++++||+||||+++|||||||||+||+
T Consensus       400 ~pgR~~~~GIrE~~m~aia~Gla~~ggl~P~~atf~~F~dra~d~iRl~~~~~~~~~~v~thd~i~vGeDGpTHq~ve~l  479 (663)
T PRK12754        400 AAGNYIHYGVREFGMTAIANGIALHGGFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQV  479 (663)
T ss_pred             CCCCEEEHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHH
T ss_conf             68662540257888999999998728972577440889998889999998752785699972563207998631668999


Q ss_pred             CHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECC-CCCEEEEECCH
Q ss_conf             10111012211211201245777765202567834999524444334566553221234737998569-97299995268
Q gi|254780655|r  490 AALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTP-NAQVTIFSSGS  568 (673)
Q Consensus       490 a~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~-~~dv~iia~G~  568 (673)
                      ++||+||||+|++|+|++|+..||++|++..+||++|||+||++|..+...+....+.+|+|.+...+ ++|++||++|+
T Consensus       480 a~lR~iPn~~v~~PaD~~E~~~a~~~al~~~~gP~~i~~~R~~~~~~~~~~~~~~~~~~G~yv~~~~~g~~dv~iia~Gs  559 (663)
T PRK12754        480 ASLRVTPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQERTEEQLANIARGGYVLKDCAGQPELIFIATGS  559 (663)
T ss_pred             HHHHHCCCCEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHCCCCCCEEEEEECCCCCCEEEEECCH
T ss_conf             99974479779813999999999999996558976999847887876876200100356329985059999999995258


Q ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCCCC-CEEEEECCCCHHHHHHHHCCCCCEEEECCCCCCC
Q ss_conf             899999999999973994399857465810008688999643679-7799972860278999845798189835776768
Q gi|254780655|r  569 ELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGSS-PIKIAIEAGLRQGWDAFIGSDGSFIGMQGFGASG  647 (673)
Q Consensus       569 ~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~-~~~vtiE~g~~~g~~~~~~~~~~~igid~Fg~sg  647 (673)
                      ||++|++||++|+++||+++|||+||++|||+|+.+|++++++.. ...++||+|++.+|.++++.++.++||++||+||
T Consensus       560 ~v~~Al~Aa~~L~~~gi~~~VVs~~~~~~~d~q~~~~~~~vl~~~~~~~v~ve~g~~~~w~~~~g~~~~~iG~~~FG~Sg  639 (663)
T PRK12754        560 EVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVTARVAVEAGIADYWYKYVGLNGAIVGMTTFGESA  639 (663)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCHHHHHHHHCCCCCCEEEEEECCCHHHHHHHCCCCCEEEECCCCCCCC
T ss_conf             99999999999996799789997898548774649999843687765069996562657999829998098567666889


Q ss_pred             CHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             888999980999899999999984
Q gi|254780655|r  648 SCDLLYQHFGINAIAIVDMVERKL  671 (673)
Q Consensus       648 ~~~el~~~~Gld~~~I~~~i~~~L  671 (673)
                      |+++|+++||||+++|+++|+++|
T Consensus       640 ~~~~l~~~~Glt~e~I~~~vk~lL  663 (663)
T PRK12754        640 PAELLFEEFGFTVDNVVAKAKALL  663 (663)
T ss_pred             CHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf             999999994989999999999659


No 6  
>PRK05899 transketolase; Reviewed
Probab=100.00  E-value=0  Score=1287.83  Aligned_cols=651  Identities=52%  Similarity=0.885  Sum_probs=610.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHH
Q ss_conf             68888999999999999999999738897643136899999984332544577898878877998565201899999997
Q gi|254780655|r   13 MKYDDDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYALLYL   92 (673)
Q Consensus        13 ~~~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~~~l   92 (673)
                      |.+.++|+++|++||+++++||++|||||+|++||+|||+++||++||+|||++|+|++|||||||+|||||++|++|+|
T Consensus         2 ~~~~~~l~~la~~iR~~~~~~v~~a~~GH~g~~lg~~~l~~al~~~~~~~~~~~p~~~~rDr~v~~~GH~~~~~Ya~~~l   81 (661)
T PRK05899          2 MMDMELLQLLANAIRFLSMDAVQKANSGHPGMPMGAADIAYVLWTRFLRHNPKNPKWPNRDRFVLSAGHGSMLLYSLLHL   81 (661)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHH
T ss_conf             88999999999999999999998639997413588999999999863542889998889985999787625699999998


Q ss_pred             CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC---CCCCCEEEEEECCC
Q ss_conf             076889988986400038879889888899873068886314799999999999985342688---76784599984362
Q gi|254780655|r   93 LGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGD---VLIDHYTYVLVGDG  169 (673)
Q Consensus        93 ~G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~---~~~d~~v~~iiGDG  169 (673)
                      +||+ +++++|++||+++|++|||||+.++||||++|||||||+|+|+|||+|+|+++.++++   .++|++|||+||||
T Consensus        82 ~G~~-~~~~~l~~~r~~~s~~~ghpe~~~~~~v~~stG~lG~gis~a~G~A~a~~~~~~~~~~~~~~~~~~~v~aviGDG  160 (661)
T PRK05899         82 TGYD-LSIEDLKNFRQLGSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAEKLLAARFNRPGHDIVDHYTYVLLGDG  160 (661)
T ss_pred             HCCC-CCHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEC
T ss_conf             2899-999999985258999999998689998636888607789999999999999866528775566577499998206


Q ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC-CCCCHHHHHHHHHHHHHC-C
Q ss_conf             11434455788765220223306999627632232235567821799886414444444-444067888888875110-2
Q gi|254780655|r  170 CLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTLSV-NGHDHHAITSTLRKAQLS-D  247 (673)
Q Consensus       170 ~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~Gw~~~~v-dG~d~~~i~~a~~~ak~~-~  247 (673)
                      ||+||++|||+|+|+++||+|||||+|||+||||++|...+.+++.+||+++||+|++| ||||+++|.+|+++|++. +
T Consensus       161 ~l~eG~a~EAln~a~~~~l~nLIvI~ndN~~sIdg~v~~~~~~~l~~rf~a~Gw~vi~v~DGhD~~~I~~Ai~~Ak~~~~  240 (661)
T PRK05899        161 CLMEGISHEACSLAGHLKLGNLIVIYDDNRISIDGDTSGWFSEDTKKRFEAYGWHVIEVVDGHDVEAIDAAIEEAKAETD  240 (661)
T ss_pred             CCCCHHHHHHHHHHCCCCCCCEEEEEECCCEEECCCCCCCCHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf             43567899999864504689889999479700066404210598999999769867843799999999999999986469


Q ss_pred             CCHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             21022201334555700047711033437223321256634877785438978999999754333566887642467631
Q gi|254780655|r  248 KPTMIACETVIGFGSPNRAGTNKVHGSALGQEEIKATRKALNWDLDPFFIPDDIMKKWRLAGLRSSQTRADWQERLSSMK  327 (673)
Q Consensus       248 kP~~I~~~T~kG~G~~~~e~~~~~HG~~l~~ee~~~~~k~lg~~~~~f~ip~~v~~~~~~~~~~~~~~~~~w~~~~~~~~  327 (673)
                      |||+|+++|+||+|+|++|+++++||+||+.|+++.+|++|+++..+|++|++++.+++....++......|.+++..+.
T Consensus       241 kPtvI~v~TiKG~G~p~~e~~~~~Hg~~L~~ee~~~~~~~lg~~~~~f~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~  320 (661)
T PRK05899        241 KPTLIIAKTIIGKGSPNKEGTHKVHGAPLGAEEIAAARKALGWDYEPFEVPEEVYAHWRKAKERGAKAEAEWNEKFAAYA  320 (661)
T ss_pred             CCEEEEEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             98689998236678732346513325875516899999962999866668868889887520023378999999999853


Q ss_pred             HHHHH---CCCCHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             11110---023001110776302355542000001355431013467888998865543322034555674000266634
Q gi|254780655|r  328 SSIRK---EFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKA  404 (673)
Q Consensus       328 ~~~~~---e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vatr~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~  404 (673)
                      ...+.   ++.+......|..        .......+..+|||++|+.+|..+++.+|+++++||||++||++..++...
T Consensus       321 ~~~p~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~Atr~afg~~L~~l~~~~p~ivg~sADl~~St~~~~~~~~~  392 (661)
T PRK05899        321 AAYPELAAEFERRAGELPAGW--------DAALPEKGKKVATRKASGKALNALAAALPELVGGSADLAGSNNTEIKGSKD  392 (661)
T ss_pred             HHCHHHHHHHHHHHCCCCCCH--------HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf             437678999987524667402--------333112465304999999999999854876178704547886644255777


Q ss_pred             CCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHH
Q ss_conf             45432001003257620023567879987288762200100355530012454111100001302454333333331010
Q gi|254780655|r  405 ISKSDFSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDGPTHQ  484 (673)
Q Consensus       405 ~~~~~~p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~tf~~F~~~~~~~ir~~al~~~~v~~v~th~gi~~G~DGpTHq  484 (673)
                      +++++||+||||+|||||+|+++|+|||++|+++||++||++|++|+|||||++|+|++||++++||+|+++|+||||||
T Consensus       393 ~~~e~~~~r~~~~GIaE~~mv~~aaGla~~G~~~P~~~tf~~F~~ra~dqir~~al~~~~v~~v~t~~Gi~vG~DG~THq  472 (661)
T PRK05899        393 FTPDDYSGRYIHYGVREFAMAAIMNGLALHGGFIPFGGTFLVFSDYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTHQ  472 (661)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHH
T ss_conf             67657898732446208999999999985499884012079899998999998876048749999787523489986612


Q ss_pred             HCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEE
Q ss_conf             00222101110122112112012457777652025678349995244443345665532212347379985699729999
Q gi|254780655|r  485 PVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTPNAQVTIF  564 (673)
Q Consensus       485 ~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~~~dv~ii  564 (673)
                      |+|||++||+||||+|++|||++|+..++++++++.++|+|||++|+++|.+.......+.+.+|+|.+..++++||+|+
T Consensus       473 ~i~dla~lr~iPn~~v~~P~d~~E~~~~~~~a~~~~~gp~~ir~~r~~~p~~~~~~~~~~~~~~G~~~~~~~~~~dv~ii  552 (661)
T PRK05899        473 PVEQLASLRAIPNLTVIRPADANETAAAWKLALERKDGPSALVLSRQNLPVLETTEEQDEGVAKGGYVLKDSGGPDVILI  552 (661)
T ss_pred             HHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCEEEE
T ss_conf             46789998558996798159999999999999966999789996688778778776514442166189998799988999


Q ss_pred             ECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCCC-CCEEEEECCCCHHHHHHHHCCCCCEEEECCC
Q ss_conf             526889999999999997399439985746581000868899964367-9779997286027899984579818983577
Q gi|254780655|r  565 SSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGS-SPIKIAIEAGLRQGWDAFIGSDGSFIGMQGF  643 (673)
Q Consensus       565 a~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~-~~~~vtiE~g~~~g~~~~~~~~~~~igid~F  643 (673)
                      ++|+||++|++|+++|+++||+++|||++|+||||+|+.++++.+|.. +..+||||+++..+|.++++.....+|+|+|
T Consensus       553 a~G~~v~~al~Aa~~L~~~gi~~~Vv~~~s~~pld~~~~~~~~~vl~~~~~~ivtvE~~~~~g~~~~~~~~~~~lGid~F  632 (661)
T PRK05899        553 ATGSEVHLALEAAKELEAEGIKVRVVSMPSTELFDEQDAAYKESVLPAAVTKRVAVEAGVADGWYKYVGLDGAVVGMDTF  632 (661)
T ss_pred             EECHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCHHHHHHHCCCCCCCEEEECCCHHHHHHHHCCCCCEEEECCCC
T ss_conf             83299999999999998649986999768872454674989986427678838998488476589872999789864888


Q ss_pred             CCCCCHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf             67688889999809998999999999848
Q gi|254780655|r  644 GASGSCDLLYQHFGINAIAIVDMVERKLS  672 (673)
Q Consensus       644 g~sg~~~el~~~~Gld~~~I~~~i~~~L~  672 (673)
                      |+||++++|+++||||+++|+++|+++|+
T Consensus       633 g~sg~~~~L~~~~gld~~~I~~~~~~~La  661 (661)
T PRK05899        633 GASAPADELFKEFGFTVENIVAAAKELLA  661 (661)
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf             89899999999959899999999999749


No 7  
>KOG0523 consensus
Probab=100.00  E-value=0  Score=1107.62  Aligned_cols=613  Identities=39%  Similarity=0.622  Sum_probs=548.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHC
Q ss_conf             88889999999999999999997388976431368999999843325445778988788779985652018999999970
Q gi|254780655|r   14 KYDDDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYALLYLL   93 (673)
Q Consensus        14 ~~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~~~l~   93 (673)
                      .+..+++..+++||.+.++++++++||||++++|.+++...||..+|+|+|.+|+|+||||||||+|||||++|++++|+
T Consensus         5 ~~~~~~~~~~n~lri~si~~~~~a~sghp~s~~s~A~~~~vlf~~~m~~~~~~p~~~n~Drfvls~GHa~~llYa~~~l~   84 (632)
T KOG0523           5 QDSQILKDAVNNLRILSIDATSAAKSGHPGSPLSLAPIMHVLFFEVMRYNPADPYWFNRDRFVLSNGHACPLLYAHWHLA   84 (632)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf             45566688764320566887776426999876320114554425432325678677787617876564313788999986


Q ss_pred             CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf             76889988986400038879889888899873068886314799999999999985342688767845999843621143
Q gi|254780655|r   94 GYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLME  173 (673)
Q Consensus        94 G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~e  173 (673)
                      |+  +++|+|++|||.+|++||||+. ++|||+++|||||||||+|+|||+++|++.+      .++||||++||||++|
T Consensus        85 G~--~~~edl~~~Rq~~s~t~ghp~~-~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k------~~~rv~~vlGDG~~~e  155 (632)
T KOG0523          85 GY--DREEDLKNFRQIGSDTPGHPEP-ELPGVEVATGPLGQGISNAVGMAYAGKHLGK------ASNRVYCVLGDGCLTE  155 (632)
T ss_pred             CC--CCHHHHHHHHHHCCCCCCCCCC-CCCCCEECCCCCCCHHHHHHHHHHHHHHHCC------CCCEEEEEECCCCCCC
T ss_conf             65--7488887777517889998866-6898342137763157777789988876412------4460899976850014


Q ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHH-HHHHCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCHH
Q ss_conf             4455788765220223306999627632232235567821799-88641444444444406788888887511-022102
Q gi|254780655|r  174 GISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYA-RFRASGWNTLSVNGHDHHAITSTLRKAQL-SDKPTM  251 (673)
Q Consensus       174 G~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~~~~~-~~~a~Gw~~~~vdG~d~~~i~~a~~~ak~-~~kP~~  251 (673)
                      |++|||+++||+++|||||+|+|+|+++||++++..+.+++.+ ||++|||+++.|||||+++|.+|+.+|+. .+||+.
T Consensus       156 G~~~Ea~s~Ag~l~ldnLVai~D~n~is~~g~t~~~~~~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~~~k~kpt~  235 (632)
T KOG0523         156 GSVWEAMSLAGHLKLDNLVAIYDNNKISIDGATSLGFDEDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAKSVKGKPTA  235 (632)
T ss_pred             CHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCCCCEE
T ss_conf             41888876640225487899972664457898655767427888888748557987485889999998655422688503


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             22013345557000477110334372233212566348777854389789999997543335668876424676311111
Q gi|254780655|r  252 IACETVIGFGSPNRAGTNKVHGSALGQEEIKATRKALNWDLDPFFIPDDIMKKWRLAGLRSSQTRADWQERLSSMKSSIR  331 (673)
Q Consensus       252 I~~~T~kG~G~~~~e~~~~~HG~~l~~ee~~~~~k~lg~~~~~f~ip~~v~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  331 (673)
                      |.++|.||+|.+..+ +.+|||.|+++++++..++.+++|...|.+|++++.                       .++.+
T Consensus       236 i~~~t~~g~G~~~ig-~~~~Hg~pl~~~~~~~~k~~~~~P~~~~~v~~~~~~-----------------------~p~~~  291 (632)
T KOG0523         236 IKATTFIGRGSPYIG-SESVHGAPLGEDDVERVKSIKGLPVLIFVVPEKVKL-----------------------YPEKP  291 (632)
T ss_pred             EEEEEEEECCCCCCC-CCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCC-----------------------CCCCC
T ss_conf             554555404755435-532258855066899888641876236871611254-----------------------77754


Q ss_pred             HCCCCHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             00230011107763023555420000013554310134678889988655433220345556740002666344543200
Q gi|254780655|r  332 KEFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFS  411 (673)
Q Consensus       332 ~e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vatr~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~p  411 (673)
                      .+..+.....+|..|.+.+.    .+...++.+|||+.|+.+|.++++++|++|+++|||.+||.+      ++++++||
T Consensus       292 ~~~~~~~~~~i~~~~~~~~p----~yk~~Dk~~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~st~t------d~~~~~~p  361 (632)
T KOG0523         292 VEDARAISVRIPKIWEKSLP----TYKVGDKAVATRKAFGEALAALAEADPRVIGGSADLKNSTLT------DFFPKRFP  361 (632)
T ss_pred             CCCCCCCCCCCCCCCCCCCC----CCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH------HHCCCCCC
T ss_conf             01244655676655323577----445586005479999999999764285648875466787166------54312276


Q ss_pred             HHCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHCCCCCH
Q ss_conf             10032576200235678799872887622001003555300124541111000013024543333333310100022210
Q gi|254780655|r  412 GRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHLAA  491 (673)
Q Consensus       412 ~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~tf~~F~~~~~~~ir~~al~~~~v~~v~th~gi~~G~DGpTHq~iedia~  491 (673)
                      +|||+||||||||+++|+|+|.++.++|||+||+.|++||||||||.++++.++++++||||+++|||||||||+||+++
T Consensus       362 ~R~i~~giaEq~mv~ia~G~a~~g~~~Pf~~tf~~F~trA~dqvr~~a~s~~~v~~v~th~~i~~GeDGPth~~iedla~  441 (632)
T KOG0523         362 ERFIECGIAEQNMVGIANGIACRGRTIPFCGTFAAFFTRAFDQVRMGALSQANVIYVATHDSIGLGEDGPTHQPIEDLAM  441 (632)
T ss_pred             CCEEEEEEEHHHHHHHHHCHHCCCCCCCHHHHHHHHHHHHHHHEEEHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHH
T ss_conf             64278732021167754023117886651387999998753024432231688579997045113688865563889999


Q ss_pred             HHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCHHHH
Q ss_conf             11101221121120124577776520256783499952444433456655322123473799856997299995268899
Q gi|254780655|r  492 LRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTPNAQVTIFSSGSELK  571 (673)
Q Consensus       492 lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~~~dv~iia~G~~v~  571 (673)
                      ||+||||+||+|+|++|+..|++.|++.++.|++++++||++|.++..  ..+.+.+|+|++.. ..+||+||++|++|+
T Consensus       442 frsiPn~~v~~PaD~~et~~av~~Aa~~~~~p~i~~~~r~~~~~~~~~--~~~~igkg~~vl~~-~~~dV~LiG~Gs~v~  518 (632)
T KOG0523         442 FRSIPNMIVFRPADGNETENAVATAANTKGTPSIRTLSRQNLPIYNNT--EIEEIGKGKYVLQE-VEPDVILIGTGSEVQ  518 (632)
T ss_pred             HHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC--CHHHHCCCCEEEEC-CCCCEEEEECCHHHH
T ss_conf             870788547710763789999999870489606998477765656896--55453265079863-888779992658999


Q ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCHHC-------CCCHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCEEEECCCC
Q ss_conf             9999999999739943998574658100-------086889996436797799972860278999845798189835776
Q gi|254780655|r  572 IAVEACEILSSRNISTRVVSVPCFELFF-------EQSDSYRAQIIGSSPIKIAIEAGLRQGWDAFIGSDGSFIGMQGFG  644 (673)
Q Consensus       572 ~al~aa~~L~~~Gi~~~Vi~~~s~k~ld-------~~~~~~~~~il~~~~~~vtiE~g~~~g~~~~~~~~~~~igid~Fg  644 (673)
                      +|++||+.|+++||++||||++||||||       .|..+|+..+++.+.....+|..+..+|..|.+.....+++|+||
T Consensus       519 ~cl~AA~~L~e~gi~vrVvd~~~~kplD~~li~~~~q~~~~ri~v~ed~~~~gsi~~~~~a~~g~~~~~~~~~~~~d~~~  598 (632)
T KOG0523         519 ECLEAAELLSEDGIKVRVVDPFTWKPLDVALIRSLAQSHEYRISVLEDHVPAGSIEVAVTAAWGKYPGILVPSLGVDTFG  598 (632)
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHEEEEHHCCCCCCCCEEECCCCCC
T ss_conf             99999999986496389954532000235877655135541799804877776665302102103788631353124677


Q ss_pred             CCCCHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf             7688889999809998999999999848
Q gi|254780655|r  645 ASGSCDLLYQHFGINAIAIVDMVERKLS  672 (673)
Q Consensus       645 ~sg~~~el~~~~Gld~~~I~~~i~~~L~  672 (673)
                      +||++.+||++|||++++|+++++.+|.
T Consensus       599 ~sG~p~ell~~fGit~~~Ia~~a~~~i~  626 (632)
T KOG0523         599 RSGPPPELLKMFGITARHIAAAALSLIG  626 (632)
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             6799789998729888999999999874


No 8  
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00  E-value=0  Score=1038.35  Aligned_cols=551  Identities=25%  Similarity=0.379  Sum_probs=480.8

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECC
Q ss_conf             99887676433468888999999999999999999738897643136899999984332544577898878877998565
Q gi|254780655|r    1 MGHPVGGRNVVLMKYDDDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAG   80 (673)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~G   80 (673)
                      +|.|.+.|+...    ++|++||++||.+++++|++ ||||||++||++||+++||+   +||++      |||||||+|
T Consensus        10 i~~p~dlk~l~~----~~l~~la~~iR~~~i~~v~~-~~GH~g~~lg~~e~~~aL~~---~f~~~------rDr~v~s~G   75 (576)
T PRK05444         10 INSPADLRKLSL----EELPQLADEIREFLIDSVSK-TGGHLGSNLGVVELTVALHY---VFDTP------KDRIIWDVG   75 (576)
T ss_pred             CCCHHHHHCCCH----HHHHHHHHHHHHHHHHHHHH-CCCCCCCCHHHHHHHHHHHH---HCCCC------CCCEEEECC
T ss_conf             699899860999----99999999999999999976-58988857479999999985---26999------884898275


Q ss_pred             CCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             20189999999707688998898640003887988988889987306888631479999999999998534268876784
Q gi|254780655|r   81 HGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDH  160 (673)
Q Consensus        81 H~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~  160 (673)
                      |||   |+||+||||    .++|++||+++| ++|||++.+++++.++|||+|||||+|+|||+|.|..+.       ||
T Consensus        76 H~~---Y~hk~LtG~----~~~~~~~r~~~~-l~g~~~~~es~~d~~~~G~~g~gls~a~G~A~a~~l~~~-------~~  140 (576)
T PRK05444         76 HQA---YPHKILTGR----RDRFDTLRQKGG-LSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGE-------DR  140 (576)
T ss_pred             HHH---HHHHHHCCC----HHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-------CC
T ss_conf             075---566886275----877631451499-889999987889877878762178899999999984699-------95


Q ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCC-CCCCCCHHHHHHH
Q ss_conf             599984362114344557887652202233069996276322322355678217998864144444-4444406788888
Q gi|254780655|r  161 YTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTL-SVNGHDHHAITST  239 (673)
Q Consensus       161 ~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~Gw~~~-~vdG~d~~~i~~a  239 (673)
                      +|||+|||||||||++|||+|+||+++ .|+|+|+|||++|||++++.....   .+|+++||+|+ .|||||+++|.+|
T Consensus       141 ~v~~~~GDG~l~eGis~EA~s~Ag~~~-~~liii~~DN~isI~~~vg~~~~~---~~Fea~Gw~~i~~iDGhd~~~i~~a  216 (576)
T PRK05444        141 KVVAVIGDGALTGGMAFEALNNAGDLK-SDLIVILNDNEMSISPNVGALSNY---TLFEELGFKYIGPIDGHDLDALVET  216 (576)
T ss_pred             EEEEEECCHHHCCHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCCCCCC---HHHHHCCCEEECCCCCCCHHHHHHH
T ss_conf             499998140103314899997555338-876999977982007886543310---1789809948686589899999999


Q ss_pred             HHHHHHCCCCHHHHHCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             887511022102220133455570004-7711033437223321256634877785438978999999754333566887
Q gi|254780655|r  240 LRKAQLSDKPTMIACETVIGFGSPNRA-GTNKVHGSALGQEEIKATRKALNWDLDPFFIPDDIMKKWRLAGLRSSQTRAD  318 (673)
Q Consensus       240 ~~~ak~~~kP~~I~~~T~kG~G~~~~e-~~~~~HG~~l~~ee~~~~~k~lg~~~~~f~ip~~v~~~~~~~~~~~~~~~~~  318 (673)
                      +++||..+||++|+++|+||+|++.+| +..+|||.+                  ||+....                  
T Consensus       217 l~~ak~~~~P~lI~~kT~~G~G~~~~e~~~~~~Hg~~------------------~f~~~~~------------------  260 (576)
T PRK05444        217 LKNAKDLKGPVLLHVVTKKGKGYAPAEADPIKYHGVG------------------KFDPETG------------------  260 (576)
T ss_pred             HHHHHHCCCCEEEEEEEECCCCCCCHHCCHHHCCCCC------------------CCCHHHC------------------
T ss_conf             9988866999899999705667781220512225668------------------8794434------------------


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             64246763111110023001110776302355542000001355431013467888998865543322034555674000
Q gi|254780655|r  319 WQERLSSMKSSIRKEFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSELVLEVVNDCLPELIGGSADLTGSNGTK  398 (673)
Q Consensus       319 w~~~~~~~~~~~~~e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vatr~a~g~~l~~i~~~~p~iv~~sADl~~St~~~  398 (673)
                           ...    +        ...+                    ...+.+|++.|..+++.+|++++++|||..|+++.
T Consensus       261 -----~~~----~--------~~~~--------------------~~~~~~f~~~L~~l~~~~~~iv~itaa~~~~t~l~  303 (576)
T PRK05444        261 -----KQP----K--------KPGK--------------------PSYTKVFGETLCELAEKDPKIVAITAAMPEGTGLD  303 (576)
T ss_pred             -----CCC----C--------CCCC--------------------CCHHHHHHHHHHHHHHHCCCCCEEHHHCCCCCCCC
T ss_conf             -----346----7--------7665--------------------06999999999999874302003054214786644


Q ss_pred             CCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHH-HHHHHHCCCEEECCCCCCCCC
Q ss_conf             2666344543200100325762002356787998728876220010035553001245-411110000130245433333
Q gi|254780655|r  399 TSQMKAISKSDFSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIR-LASLMGIRVIHVLTHDSIGLG  477 (673)
Q Consensus       399 ~~~~~~~~~~~~p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~tf~~F~~~~~~~ir-~~al~~~~v~~v~th~gi~~G  477 (673)
                            .|++.||+||||||||||||+++|+|||+ +|++||+++|++|++|+||||+ ++|+|++||+|+++|+|+ +|
T Consensus       304 ------~f~~~~P~R~~~~GIaEqhav~~aaGlA~-~G~~Pf~~~~stFl~Ra~dQi~~d~al~~l~V~~v~d~~Gl-vG  375 (576)
T PRK05444        304 ------EFSKRFPDRYFDVGIAEQHAVTFAAGLAT-EGLKPVVAIYSTFLQRAYDQVIHDVALQNLPVTFAIDRAGL-VG  375 (576)
T ss_pred             ------HHHHHCCCCEEECCCHHHHHHHHHHHHHH-CCCCCEEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCC-CC
T ss_conf             ------36775876341157457779999745865-69986688821287776999987654127976899607866-78


Q ss_pred             CCCCHHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf             33310100022210111012211211201245777765202567834999524444334566553221234737998569
Q gi|254780655|r  478 EDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTP  557 (673)
Q Consensus       478 ~DGpTHq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~  557 (673)
                      +|||||||+|||++||+||||+|++|||++|+..+|++|++..++|+|||++|++++....  ...+.+.+|++.+++ +
T Consensus       376 eDGpTHq~iedla~lR~iPnl~V~~PaD~~E~~~~~~~Al~~~~gP~~irl~R~~~~~~~~--~~~~~~~~Gk~~vl~-~  452 (576)
T PRK05444        376 ADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTALAYDDGPTAIRYPRGSGVGVEL--PELEPLPIGKGEVLR-E  452 (576)
T ss_pred             CCCCCCCCHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC--CCCCCCCCCEEEEEE-C
T ss_conf             9985100379999852699818996299999999999998578998899942788888787--765434465089996-2


Q ss_pred             CCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCCCCCEEEEECCC-----CHHHHHHHHC
Q ss_conf             97299995268899999999999973994399857465810008688999643679779997286-----0278999845
Q gi|254780655|r  558 NAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIEAG-----LRQGWDAFIG  632 (673)
Q Consensus       558 ~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE~g-----~~~g~~~~~~  632 (673)
                      |+|++||++|+||++|++|+++|+++||+++||||||+||||+   +++.+++.++..+||+|++     ++..|.+++.
T Consensus       453 G~dv~IiatGs~v~~Al~Aa~~L~~~Gi~~~VVs~~~ikPlD~---e~l~~~~~~~~~ivtvEeh~~~GGlGs~v~e~l~  529 (576)
T PRK05444        453 GSDVAILAFGTMLAEALEAAERLAAEGISATVVDARFVKPLDE---ELLLELAAKHELLVTVEENAIMGGFGSAVLEFLA  529 (576)
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCH---HHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHH
T ss_conf             8978999538799999999999985699879995587788799---9999999548979999389757658999999999


Q ss_pred             CCC-------CEEEE-CCCCCCCCHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             798-------18983-5776768888999980999899999999984
Q gi|254780655|r  633 SDG-------SFIGM-QGFGASGSCDLLYQHFGINAIAIVDMVERKL  671 (673)
Q Consensus       633 ~~~-------~~igi-d~Fg~sg~~~el~~~~Gld~~~I~~~i~~~L  671 (673)
                      .++       ..+|| |+|+.||++++|+++||||+++|+++|+++|
T Consensus       530 ~~g~~~~~~~~~iGi~D~F~~sG~~~~L~~~~Gl~~e~I~~kI~~~L  576 (576)
T PRK05444        530 EHGLLKPVKVLNLGLPDEFIDHGSREELLAELGLDAEGIARRILAWL  576 (576)
T ss_pred             HCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf             75997797469998488366889999999996939999999999659


No 9  
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00  E-value=0  Score=1010.79  Aligned_cols=553  Identities=20%  Similarity=0.290  Sum_probs=473.9

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECC
Q ss_conf             99887676433468888999999999999999999738897643136899999984332544577898878877998565
Q gi|254780655|r    1 MGHPVGGRNVVLMKYDDDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAG   80 (673)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~G   80 (673)
                      +|+|.+.|+...    ++|+++|++||.+++++|+ ++|||||++||+|||+++||+   +||  +|    |||||||+|
T Consensus         6 i~~p~dlk~l~~----~~L~~la~~iR~~~i~~v~-~~~GH~g~~lg~~el~~alh~---~f~--~p----~Dr~v~s~G   71 (581)
T PRK12315          6 INSPKDIKKLSL----EELEQLATEIRTALLEKDS-AHGGHVGPNLGVVELTIALHY---VFN--SP----KDKIVWDVS   71 (581)
T ss_pred             CCCHHHHHHCCH----HHHHHHHHHHHHHHHHHHH-HCCCCCCCCHHHHHHHHHHHH---HCC--CC----CCCEEEECC
T ss_conf             899899862999----9999999999999999974-438867857689999999998---528--98----887477376


Q ss_pred             CCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             20189999999707688998898640003887988988889987306888631479999999999998534268876784
Q gi|254780655|r   81 HGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDH  160 (673)
Q Consensus        81 H~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~  160 (673)
                      |||   |+||+||||.+ .++++++||   + +.|||.+.+++++.++|||+|||||+|+|||+|++.++.       ++
T Consensus        72 H~s---Y~~~~Ltgr~~-~~~~~~~~~---~-l~g~~~~~e~~~d~~~tG~~g~gls~avGmA~A~~~~~~-------~~  136 (581)
T PRK12315         72 HQS---YPHKMLTGRKE-AFLDPDHYD---D-VTGYTNPEESEHDFFTVGHTSTSIALATGMAKARDLKGE-------KE  136 (581)
T ss_pred             CHH---HHHHHHHCCCC-CCCCCHHCC---C-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC-------CC
T ss_conf             178---99999956601-168612128---8-889898988889877877637899999999999997299-------98


Q ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC----------CCHHHHHHHCCCCCCCC-C
Q ss_conf             599984362114344557887652202233069996276322322355678----------21799886414444444-4
Q gi|254780655|r  161 YTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADS----------TDQYARFRASGWNTLSV-N  229 (673)
Q Consensus       161 ~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~----------~~~~~~~~a~Gw~~~~v-d  229 (673)
                      +|||+||||||+||++|||+|+||+++ +|||+|+|||++|||++++..+.          .....+|+++||+|+.+ |
T Consensus       137 ~v~~v~GDG~l~eG~~~EA~~~Ag~~~-~nlivi~ddN~isI~~~~~~~~~~~~~~~~~~~~~~~~~fe~~G~~~~~v~D  215 (581)
T PRK12315        137 NIIAVIGDGSLSGGLAFEGLNNAAELK-SNLIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVED  215 (581)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHCCCC-CCEEEEEECCCEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCEEEECCC
T ss_conf             489998551344016799987634589-8559999768802358730777777887750375501069984986882579


Q ss_pred             CCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             4406788888887511022102220133455570-004771103343722332125663487778543897899999975
Q gi|254780655|r  230 GHDHHAITSTLRKAQLSDKPTMIACETVIGFGSP-NRAGTNKVHGSALGQEEIKATRKALNWDLDPFFIPDDIMKKWRLA  308 (673)
Q Consensus       230 G~d~~~i~~a~~~ak~~~kP~~I~~~T~kG~G~~-~~e~~~~~HG~~l~~ee~~~~~k~lg~~~~~f~ip~~v~~~~~~~  308 (673)
                      |||+++|.+|+++||..+||++|+++|+||+|++ ..++...||+.                  .||++.+.        
T Consensus       216 Ghd~~~i~~al~~ak~~~~P~~I~v~T~kG~G~~~a~~~~~~~H~~------------------~pf~~~~g--------  269 (581)
T PRK12315        216 GNDLESLIELFKEVKDIDHPIVLHIHTLKGKGYKPAEENKEAFHWH------------------MPFDLETG--------  269 (581)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHCCC------------------CCCCCCCC--------
T ss_conf             9999999999999863699979999967863666110357763665------------------67661346--------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             43335668876424676311111002300111077630235554200000135543101346788899886554332203
Q gi|254780655|r  309 GLRSSQTRADWQERLSSMKSSIRKEFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSELVLEVVNDCLPELIGGS  388 (673)
Q Consensus       309 ~~~~~~~~~~w~~~~~~~~~~~~~e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vatr~a~g~~l~~i~~~~p~iv~~s  388 (673)
                                        ++.        .    +.                 ..-....+++..|...++.++++++++
T Consensus       270 ------------------~~~--------~----~~-----------------~~~~~~~~~~~~l~~~~~~~~~ivai~  302 (581)
T PRK12315        270 ------------------QSK--------V----PA-----------------SGESYSSVVLDYLLKKIEEGKPVVAIN  302 (581)
T ss_pred             ------------------CCC--------C----CC-----------------CCCCHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf             ------------------545--------6----78-----------------756989999999999987464415421


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHH-HHHHHHCCCEE
Q ss_conf             45556740002666344543200100325762002356787998728876220010035553001245-41111000013
Q gi|254780655|r  389 ADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIR-LASLMGIRVIH  467 (673)
Q Consensus       389 ADl~~St~~~~~~~~~~~~~~~p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~tf~~F~~~~~~~ir-~~al~~~~v~~  467 (673)
                      ||+.+++++.      .|+++||+||||||||||||+++|+|||+ .|++||+++|++|++|+|+||+ ++|+|++||++
T Consensus       303 a~~~~~~gl~------~f~~~~P~R~i~~GIaEq~mv~~a~GlA~-~G~~P~~~~fstFl~ra~dqi~~dial~~lpv~~  375 (581)
T PRK12315        303 AAIPGVFGLK------EFRKKYPDRYVDVGIAEQHSVAFASGMAA-AGARPVIFVNSTFLQRAYDQLSHDLAINNNPAVM  375 (581)
T ss_pred             CCCCCCCCCC------HHHHHCCCCEEECCHHHHHHHHHHHHHHH-CCCEEEEEEECHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf             3578765753------13241850167516088899999878975-7996468884423314688998999983699899


Q ss_pred             ECCCCCCCCCCCCCHHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             02454333333331010002221011101221121120124577776520256783499952444433456655322123
Q gi|254780655|r  468 VLTHDSIGLGEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCA  547 (673)
Q Consensus       468 v~th~gi~~G~DGpTHq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~  547 (673)
                      +++|+|+  |+|||||||+|||++||+||||+|++|||++|++.+|++|+...++|+|||+||+++|...   .....+.
T Consensus       376 ~~~~~~i--gedGpTHq~iedia~lR~iPN~~V~~PaD~~E~~~~~~~Al~~~~gP~~iR~pr~~~~~~~---~~~~~~~  450 (581)
T PRK12315        376 IVFGGSI--SGNSVTHQGSFDIAMISNIPNLVYLAPTSKEELIAMLEWALTQHEHPVAIRVPEHVLESGP---TVDTDYS  450 (581)
T ss_pred             EEECCCC--CCCCCCCCCHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC---CCCCCCC
T ss_conf             9961777--8999875147788997256883899319999999999999971699589993787677787---6555555


Q ss_pred             CCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCHHCCCCHHHHHHHCCCCCEEEEECCC----
Q ss_conf             473799856997299995268899999999999973-994399857465810008688999643679779997286----
Q gi|254780655|r  548 LGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSR-NISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIEAG----  622 (673)
Q Consensus       548 ~G~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~-Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE~g----  622 (673)
                      .|+|.+++ +|.|++|+++|+||.+|++|+++|+++ ||+++|||++|+||||++   .+.++..++..+||+|++    
T Consensus       451 ~g~~~v~~-~G~dv~Iia~Gs~v~~A~~aa~~L~~~~gI~~~Vi~~~~vkPlD~~---~l~~~~~~~~~ivtvEeh~~~G  526 (581)
T PRK12315        451 TLNYEVAK-AGEKVAILALGDFYELGEKVAKKLKEKLGIDATLINPKFITGLDEE---LLENLKEDHELVVTLEDGILDG  526 (581)
T ss_pred             CCCEEEEE-CCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH---HHHHHHHCCCEEEEEECCCCCC
T ss_conf             44189975-5898899986077899999999987512998799957724887999---9999982498799992797664


Q ss_pred             -CHHHHHHHHCCCCC---EEEE-CCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf             -02789998457981---8983-57767688889999809998999999999848
Q gi|254780655|r  623 -LRQGWDAFIGSDGS---FIGM-QGFGASGSCDLLYQHFGINAIAIVDMVERKLS  672 (673)
Q Consensus       623 -~~~g~~~~~~~~~~---~igi-d~Fg~sg~~~el~~~~Gld~~~I~~~i~~~L~  672 (673)
                       ++..|.++++.++.   .+|+ |+|+.||++++|+++||||+++|+++|+++|+
T Consensus       527 GlGs~v~~~l~~~~~~v~~~Gi~d~F~~sg~~~el~~~~Glt~e~I~~~I~~~Lk  581 (581)
T PRK12315        527 GFGEKIARYYGNSDMKVLNYGAKKEFADRVPVEELYKRYHLTPEQIVEDILSVLK  581 (581)
T ss_pred             CHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf             5899999999767990899835886768899999999949699999999999859


No 10 
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00  E-value=0  Score=997.58  Aligned_cols=558  Identities=23%  Similarity=0.355  Sum_probs=477.6

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECC
Q ss_conf             99887676433468888999999999999999999738897643136899999984332544577898878877998565
Q gi|254780655|r    1 MGHPVGGRNVVLMKYDDDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAG   80 (673)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~G   80 (673)
                      +|.|.+.|+..+    ++|++||++||.+++|+|++ ||||||++||+|||+++||.   +||+  |    |||||||+|
T Consensus        12 i~~p~dlk~l~~----~~L~~la~~iR~l~id~v~~-~sGHpg~~lG~ael~~aL~~---~f~~--p----RDRfVlS~G   77 (642)
T PRK12571         12 INGPADLRALSD----AELEQLADEIRAEVISAVSE-TGGHLGSSLGVVELTVALHA---VFNT--P----RDKLVWDVG   77 (642)
T ss_pred             CCCHHHHHHCCH----HHHHHHHHHHHHHHHHHHHH-CCCCCCCCHHHHHHHHHHHH---HCCC--C----CCCEEEECC
T ss_conf             699899872999----99999999999999999976-58978866679999999987---2499--9----887798485


Q ss_pred             CCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             20189999999707688998898640003887988988889987306888631479999999999998534268876784
Q gi|254780655|r   81 HGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDH  160 (673)
Q Consensus        81 H~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~  160 (673)
                      |||   |++|+|+||.    |+|++|||+|| ++|||++.++++++++|||+|||||+|+|||+|+++++.       ||
T Consensus        78 H~S---Y~~l~LtG~~----d~lk~fRq~gs-~tGhp~~~et~~~~~~~G~~g~gls~AvGmA~A~~l~~~-------d~  142 (642)
T PRK12571         78 HQC---YPHKLLTGRR----DQFRTLRQKGG-LSGFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQP-------DG  142 (642)
T ss_pred             HHH---HHHHHHHCCH----HHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-------CC
T ss_conf             688---9999986888----78751760699-999786998898987877653588999999999985699-------97


Q ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC------------------CCH--------
Q ss_conf             599984362114344557887652202233069996276322322355678------------------217--------
Q gi|254780655|r  161 YTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADS------------------TDQ--------  214 (673)
Q Consensus       161 ~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~------------------~~~--------  214 (673)
                      +|||+|||||||||++|||+|+||+++ +|||+|+|||++|||++++....                  .++        
T Consensus       143 ~v~~i~GDG~LmEGvs~EA~slAGhl~-~kLIvi~DDN~iSIdg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (642)
T PRK12571        143 DVVAVIGDGSLTAGMAYEALNNAGAAD-RRLIVILNDNEMSIAPPVGALANYLSTLRSSDPFATLRAIAKGVEERLPGPL  221 (642)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHCCCC-CCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHH
T ss_conf             089997571444058999998514036-8769999438744277731788999998834408999999999986064468


Q ss_pred             -----------------HHHHHHCCCCCCC-CCCCCHHHHHHHHHHHHH-CCCCHHHHHCCCCCCCCCCCCCCC-CCCCC
Q ss_conf             -----------------9988641444444-444406788888887511-022102220133455570004771-10334
Q gi|254780655|r  215 -----------------YARFRASGWNTLS-VNGHDHHAITSTLRKAQL-SDKPTMIACETVIGFGSPNRAGTN-KVHGS  274 (673)
Q Consensus       215 -----------------~~~~~a~Gw~~~~-vdG~d~~~i~~a~~~ak~-~~kP~~I~~~T~kG~G~~~~e~~~-~~HG~  274 (673)
                                       ...|+++||.+.. +||||++++.++++++|. .++|++|++.|.||+|++..+... ++|+.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~e~~g~~~~~p~dghd~~~~~~~l~~ak~~~~~P~~i~~~t~kg~g~~~ae~~~~~~h~~  301 (642)
T PRK12571        222 RDGARRARELVTGMPGGGTLFEELGFTYVGPIDGHDMEALLSVLRAARARATGPVLVHVVTEKGKGYAPAEDEADKYHAV  301 (642)
T ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCHHHCCHHHHHHH
T ss_conf             99999999875337876506787387766787877899999999999972599857520147633775311397764330


Q ss_pred             CCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHC
Q ss_conf             37223321256634877785438978999999754333566887642467631111100230011107763023555420
Q gi|254780655|r  275 ALGQEEIKATRKALNWDLDPFFIPDDIMKKWRLAGLRSSQTRADWQERLSSMKSSIRKEFERRFSDALPDCFDNAFINLK  354 (673)
Q Consensus       275 ~l~~ee~~~~~k~lg~~~~~f~ip~~v~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~e~~~~~~~~~p~~~~~~~~~~~  354 (673)
                      .                  +|+..                               .         + .|..         
T Consensus       302 ~------------------~~~~~-------------------------------~---------~-~~~~---------  313 (642)
T PRK12571        302 G------------------KFDVA-------------------------------T---------G-LQKK---------  313 (642)
T ss_pred             C------------------CCCCC-------------------------------C---------C-CCCC---------
T ss_conf             5------------------43301-------------------------------3---------5-6444---------


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             00001355431013467888998865543322034555674000266634454320010032576200235678799872
Q gi|254780655|r  355 KKFEHSKPMIATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAMAAAMNGIALH  434 (673)
Q Consensus       355 ~~~~~~~~~vatr~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~p~r~i~~GIaE~~~~~~aaGla~~  434 (673)
                          ......+.+.++++.|..+++.+|++++++|||.+|+++.      .+.+.||+|||++|||||+|+++++||| +
T Consensus       314 ----~~~~~~~~~~~~g~~l~~la~~~~~lv~~sadl~~stgl~------~f~~~~p~R~~~~GIrE~~m~a~a~GlA-~  382 (642)
T PRK12571        314 ----SKPNAPSYTSVFGDELVKEAEEDSDIVAITAAMPSGTGLD------KLQKRFPNRVFDVGIAEQHAVTFAAGLA-A  382 (642)
T ss_pred             ----CCCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCC------CHHCCCCCCCCCCCHHHHHHHHHHHHHH-H
T ss_conf             ----6787622999999999999974110102000367777761------0101588655552455678999963476-4


Q ss_pred             CCCCCEECCCHHHHHHHHHHHHH-HHHHHCCCEEECCCCCCCCCCCCCHHHHCCCCCHHHHHCCCCEEEECCHHHHHHHH
Q ss_conf             88762200100355530012454-11110000130245433333333101000222101110122112112012457777
Q gi|254780655|r  435 KGLAPYSGTFMVFSDYSRPAIRL-ASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECW  513 (673)
Q Consensus       435 ~g~~p~~~tf~~F~~~~~~~ir~-~al~~~~v~~v~th~gi~~G~DGpTHq~iedia~lr~iPnl~v~~P~d~~E~~~~~  513 (673)
                      +|++||++||++|++|+|+|||+ +|||++||+|++||+|+ +|||||||||+|||++||+||||+|++|+|++|++.+|
T Consensus       383 ~G~~P~~~tf~~F~~ra~~qi~~~~al~~lpv~~v~~~~Gl-vGeDGpTHq~iedla~lR~iPnl~V~~PaD~~E~~~a~  461 (642)
T PRK12571        383 AGLKPFCAIYSTFLQRGYDQVLHDVALQKLPVRFVIDRAGL-VGADGATHAGMFDMAFLTCLPNLRVMAPADEAELRHML  461 (642)
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEECCCC-CCCCCCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHH
T ss_conf             69962899967445543788763255159866999966732-47998764243778875479981899129999999999


Q ss_pred             HHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             65202567834999524444334566553221234737998569972999952688999999999999739943998574
Q gi|254780655|r  514 QVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVP  593 (673)
Q Consensus       514 ~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~  593 (673)
                      ++|+++++||++||++||++|..... .....+..|++.+++.+++|++||++|+||+.|++|+++|+++||+++||||+
T Consensus       462 ~~al~~~~gP~~i~l~R~~~~~~~~~-~~~~~~~~g~~~~~~~g~~dv~lia~Gs~v~~Al~Aa~~L~~~Gi~~~Vv~~~  540 (642)
T PRK12571        462 RTAVAHDDGPIAVRYPRGEGVGVEIP-AVGRVLGIGKGRVPREGRPDVAILSVGAHLHECLEAAELLEAEGISVTVADAR  540 (642)
T ss_pred             HHHHHCCCCCEEEEECCCCCCCCCCC-CCCCCCCCCEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf             99986689988999527878887766-42111356438994279999899986099999999999998669986998167


Q ss_pred             CCCHHCCCCHHHHHHHCCCCCEEEEECCCCHHHHHHH----HCCC--------CCEEEE-CCCCCCCCHHHHHHHCCCCH
Q ss_conf             6581000868899964367977999728602789998----4579--------818983-57767688889999809998
Q gi|254780655|r  594 CFELFFEQSDSYRAQIIGSSPIKIAIEAGLRQGWDAF----IGSD--------GSFIGM-QGFGASGSCDLLYQHFGINA  660 (673)
Q Consensus       594 s~k~ld~~~~~~~~~il~~~~~~vtiE~g~~~g~~~~----~~~~--------~~~igi-d~Fg~sg~~~el~~~~Gld~  660 (673)
                      |++|+|+   .++.++...++.+|++|+++..||+++    ++..        ...+|+ |+||.||++++|+++||||+
T Consensus       541 ~~kp~D~---~~~~~~~~~~~~vv~~E~~~~gG~g~~v~~~~~~~g~~~~~~~~~~~Gi~d~Fg~sa~~~~l~~~~Glt~  617 (642)
T PRK12571        541 FVKPLDE---ALIAQLARRHRVLVTVEDGAMGGFGAHVLHHLADAGLLDGGLKLRTLGLPDRFIDHASPEEMYAEAGLTA  617 (642)
T ss_pred             CCCCCCH---HHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCH
T ss_conf             3787799---9999997009889999078512389999999997498778973899835887678499999999979399


Q ss_pred             HHHHHHHHHHHC
Q ss_conf             999999999848
Q gi|254780655|r  661 IAIVDMVERKLS  672 (673)
Q Consensus       661 ~~I~~~i~~~L~  672 (673)
                      ++|+++|+++|+
T Consensus       618 e~Iv~~i~~~L~  629 (642)
T PRK12571        618 PDIAAQVTGALA  629 (642)
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999986


No 11 
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=100.00  E-value=0  Score=928.02  Aligned_cols=559  Identities=23%  Similarity=0.352  Sum_probs=481.0

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECC
Q ss_conf             99887676433468888999999999999999999738897643136899999984332544577898878877998565
Q gi|254780655|r    1 MGHPVGGRNVVLMKYDDDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAG   80 (673)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~G   80 (673)
                      +++|.+.|+...    ++|++||.|||..+++.|++ +|||+|++||+||||+|||+   +||++      +|+||||+|
T Consensus         8 i~~P~dLk~ls~----~eL~~La~EiR~~li~~vS~-~GGHlgsnLGvVELTiALH~---VF~sP------~D~~IwDVg   73 (627)
T COG1154           8 INSPADLKKLSI----EELPQLADEIREFLLEVVSA-TGGHLGSNLGVVELTIALHY---VFDSP------KDKLIWDVG   73 (627)
T ss_pred             CCCHHHHHHCCH----HHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCHHHHHHHHHH---HHCCC------CCCEEEECC
T ss_conf             489899864799----99999999999999998622-78864778670034477788---71798------787677567


Q ss_pred             CCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             20189999999707688998898640003887988988889987306888631479999999999998534268876784
Q gi|254780655|r   81 HGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDH  160 (673)
Q Consensus        81 H~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~  160 (673)
                      ||+   |+||.||||+    |++.++||.++ ++|||.+.|++++.|.+||++++||+|+|||.|.+..+ +      ++
T Consensus        74 HQa---YpHKiLTGR~----e~f~tlRq~~G-lsGf~~r~ESe~D~f~~GHsSTSiSaalG~A~A~~~~g-~------~~  138 (627)
T COG1154          74 HQA---YPHKILTGRR----EQFDTLRQKDG-LSGFPKREESEHDWFGVGHSSTSISAALGMAKARDLKG-E------DR  138 (627)
T ss_pred             CCC---CHHHHHCCCH----HHCCHHHHCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC-C------CC
T ss_conf             555---3067761865----53231443299-78999965677766355745878988766899887429-9------88


Q ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC---------------CCH-----------
Q ss_conf             599984362114344557887652202233069996276322322355678---------------217-----------
Q gi|254780655|r  161 YTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADS---------------TDQ-----------  214 (673)
Q Consensus       161 ~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~---------------~~~-----------  214 (673)
                      +|+||||||+|+.||+|||||+||...-.|+|||+|||+|||+.+++....               +..           
T Consensus       139 ~vvaVIGDGAlt~GmA~EALN~ag~~~~~~~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~  218 (627)
T COG1154         139 NVVAVIGDGALTGGMAFEALNNAGADLKSNLIVILNDNEMSISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPL  218 (627)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHH
T ss_conf             37999777633001799998533230489989998079864587754799999998626357788887799998515378


Q ss_pred             -----------H------HHHHHCCCCCCC-CCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf             -----------9------988641444444-44440678888888751102210222013345557000477-1103343
Q gi|254780655|r  215 -----------Y------ARFRASGWNTLS-VNGHDHHAITSTLRKAQLSDKPTMIACETVIGFGSPNRAGT-NKVHGSA  275 (673)
Q Consensus       215 -----------~------~~~~a~Gw~~~~-vdG~d~~~i~~a~~~ak~~~kP~~I~~~T~kG~G~~~~e~~-~~~HG~~  275 (673)
                                 +      ..|+.+||+|+. |||||+++|..+|+++|+.++|+++|+.|.||+|++..|.+ .+|||..
T Consensus       219 ~~~~~r~e~~~K~l~~~~~lFeelGf~YiGPiDGHni~~Li~~Lk~~kd~~gPvllHv~T~KGKGY~pAE~d~~~~H~v~  298 (627)
T COG1154         219 KRFAKRAEESIKGLLVPGTLFEELGFNYIGPIDGHNLEELIPTLKNAKDLKGPVLLHVVTKKGKGYKPAEEDPIKYHGVG  298 (627)
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHCCHHHCCCCC
T ss_conf             99999999753025673025898187467885877899999999998537998899999658888882354965351777


Q ss_pred             CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHCC
Q ss_conf             72233212566348777854389789999997543335668876424676311111002300111077630235554200
Q gi|254780655|r  276 LGQEEIKATRKALNWDLDPFFIPDDIMKKWRLAGLRSSQTRADWQERLSSMKSSIRKEFERRFSDALPDCFDNAFINLKK  355 (673)
Q Consensus       276 l~~ee~~~~~k~lg~~~~~f~ip~~v~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~e~~~~~~~~~p~~~~~~~~~~~~  355 (673)
                                        ||+.++                                       .+..+.           
T Consensus       299 ------------------~f~~~~---------------------------------------tg~~~~-----------  310 (627)
T COG1154         299 ------------------PFDPIE---------------------------------------TGQSKK-----------  310 (627)
T ss_pred             ------------------CCCCCC---------------------------------------CCCCCC-----------
T ss_conf             ------------------877433---------------------------------------576677-----------


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             00013554310134678889988655433220345556740002666344543200100325762002356787998728
Q gi|254780655|r  356 KFEHSKPMIATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAMAAAMNGIALHK  435 (673)
Q Consensus       356 ~~~~~~~~vatr~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~p~r~i~~GIaE~~~~~~aaGla~~~  435 (673)
                         ..+...+..+.|+.+|..+++.++++|+.+|.+...++.     .. |.++||+|||||||||||++++|+|||. +
T Consensus       311 ---~~~~~~sys~vf~~~L~~~a~~d~~ivaITaAM~~gtGL-----~~-F~~~fP~R~fDVGIAEQHAVT~AAGlA~-~  380 (627)
T COG1154         311 ---SKPSAPSYTKVFGDTLCELAAKDEKIVAITAAMPEGTGL-----VK-FSKKFPDRFFDVGIAEQHAVTFAAGLAA-E  380 (627)
T ss_pred             ---CCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCH-----HH-HHHHCCHHHEEHHHHHHHHHHHHHHHHH-C
T ss_conf             ---788888878999999999984189759983577788776-----99-9885845333023568889999999985-7


Q ss_pred             CCCCEECCCHHHHHHHHHH-HHHHHHHHCCCEEECCCCCCCCCCCCCHHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHH
Q ss_conf             8762200100355530012-454111100001302454333333331010002221011101221121120124577776
Q gi|254780655|r  436 GLAPYSGTFMVFSDYSRPA-IRLASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQ  514 (673)
Q Consensus       436 g~~p~~~tf~~F~~~~~~~-ir~~al~~~~v~~v~th~gi~~G~DGpTHq~iedia~lr~iPnl~v~~P~d~~E~~~~~~  514 (673)
                      |++||+++|+||+||+||| +||+|+|++||+|+.+++|+ +|+||+||||++|+++||+||||.|+.|+|++|+..|++
T Consensus       381 G~kPvvaIYSTFLQRAYDQliHDvaiqnLPV~faIDRAGi-vG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el~~ml~  459 (627)
T COG1154         381 GMKPVVAIYSTFLQRAYDQLIHDVAIQNLPVTFAIDRAGI-VGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQMLY  459 (627)
T ss_pred             CCCCEEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCC-CCCCCCCCCCHHHHHHHHCCCCCEEECCCCHHHHHHHHH
T ss_conf             9998899923778777888999988606985999846764-589998655188899873489857866799999999999


Q ss_pred             HHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             52025678349995244443345665532212347379985699729999526889999999999997399439985746
Q gi|254780655|r  515 VALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPC  594 (673)
Q Consensus       515 ~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s  594 (673)
                      ||+.++++|++|||||++.+....... .+.+.+|+|+++++ |.||+||++|.++..|++||+.|.+.||+++|||+++
T Consensus       460 ta~~~~~gP~AiRyPrg~~~~~~~~~~-~~~~~~Gk~~i~~~-G~~vail~~G~~~~~al~vae~L~~~Gi~~TVvd~rf  537 (627)
T COG1154         460 TALAQDDGPVAIRYPRGNGVGVILTPE-LEPLEIGKGELLKE-GEKVAILAFGTMLPEALKVAEKLNAYGISVTVVDPRF  537 (627)
T ss_pred             HHHHCCCCCEEEEECCCCCCCCCCCCC-CCCCCCCCEEEEEC-CCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEECCEE
T ss_conf             998647887489946888888776655-55134653688725-8808999442226899999999986398737886712


Q ss_pred             CCHHCCCCHHHHHHHCCCCCEEEEECCC-----CHHHHHHHHCCCC-----CEEEE-CCCCCCCCHHHHHHHCCCCHHHH
Q ss_conf             5810008688999643679779997286-----0278999845798-----18983-57767688889999809998999
Q gi|254780655|r  595 FELFFEQSDSYRAQIIGSSPIKIAIEAG-----LRQGWDAFIGSDG-----SFIGM-QGFGASGSCDLLYQHFGINAIAI  663 (673)
Q Consensus       595 ~k~ld~~~~~~~~~il~~~~~~vtiE~g-----~~~g~~~~~~~~~-----~~igi-d~Fg~sg~~~el~~~~Gld~~~I  663 (673)
                      +||+|+   +++.++...+..+||+|++     .++.+.++++..+     ..+|+ |.|..||++++++..+|||+++|
T Consensus       538 vkPlD~---~ll~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~~~~~~~v~~lglpd~fi~hg~~~el~~~~gLd~~~i  614 (627)
T COG1154         538 VKPLDE---ALLLELAKSHDLVVTLEENVVDGGFGSAVLEFLAAHGILVPVLNLGLPDEFIDHGSPEELLAELGLDAEGI  614 (627)
T ss_pred             CCCCCH---HHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCHHHHHHHCCCCHHHH
T ss_conf             677799---99999986568699996373146378999999996499873377138767643699999998839998999


Q ss_pred             HHHHHHHHC
Q ss_conf             999999848
Q gi|254780655|r  664 VDMVERKLS  672 (673)
Q Consensus       664 ~~~i~~~L~  672 (673)
                      +++|+++|+
T Consensus       615 ~~~i~~~l~  623 (627)
T COG1154         615 ARRILEWLK  623 (627)
T ss_pred             HHHHHHHHH
T ss_conf             999999875


No 12 
>pfam00456 Transketolase_N Transketolase, thiamine diphosphate binding domain. This family includes transketolase enzymes EC:2.2.1.1. and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit EC:1.2.4.4. Both these enzymes utilize thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.
Probab=100.00  E-value=0  Score=716.37  Aligned_cols=324  Identities=52%  Similarity=0.957  Sum_probs=310.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCC
Q ss_conf             99999999999999999738897643136899999984332544577898878877998565201899999997076889
Q gi|254780655|r   19 YKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYALLYLLGYQDV   98 (673)
Q Consensus        19 l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~~~l~G~~~~   98 (673)
                      .+++++.||+++++||.+|||||||++||+++++++||.++|+|||+||+|++|||||+|+||+||++|+++++.|| ++
T Consensus         2 ~~~~~~~iR~l~~d~v~~A~sGHpG~~ls~adi~~~L~~~~l~~~p~~p~w~~RDRfvLS~GH~s~~lYa~L~l~G~-~~   80 (333)
T pfam00456         2 DKRAANAIRALAMDAVEKAGSGHPGAPMGMAPIAEVLFKRTLRHNPNDPKWPNRDRFVLSNGHASMLLYSLLHLTGY-DL   80 (333)
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCC-CC
T ss_conf             57999999999999999838998206889999999999998277977989989874999674046999999998699-99


Q ss_pred             CHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC---CCCCCEEEEEECCCCCCCHH
Q ss_conf             988986400038879889888899873068886314799999999999985342688---76784599984362114344
Q gi|254780655|r   99 TIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGD---VLIDHYTYVLVGDGCLMEGI  175 (673)
Q Consensus        99 ~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~---~~~d~~v~~iiGDG~l~eG~  175 (673)
                      ++|+|++||+++|+||||||+..+||||+||||||||+++|+|||+|.|.++.++++   +++||+|||++||||||||+
T Consensus        81 ~~edLk~frq~~S~~~GHPe~~~~~Gve~tTG~LGqGl~~avG~Ala~k~l~~~~n~~~~~~~d~~vy~l~GDGel~EG~  160 (333)
T pfam00456        81 SMEDLKSFRQLGSKTPGHPEFGHTAGVEVTTGPLGQGIANAVGMAIAEANLAATYNRPGFDIVDHYTYVFLGDGCLMEGV  160 (333)
T ss_pred             CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHH
T ss_conf             89999863368999999989888998240687742225678879999999876636676665574499984643125398


Q ss_pred             HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC-CCCCHHHHHHHHHHHHHC-CCCHHHH
Q ss_conf             55788765220223306999627632232235567821799886414444444-444067888888875110-2210222
Q gi|254780655|r  176 SQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTLSV-NGHDHHAITSTLRKAQLS-DKPTMIA  253 (673)
Q Consensus       176 ~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~Gw~~~~v-dG~d~~~i~~a~~~ak~~-~kP~~I~  253 (673)
                      +|||+++|++++|+|||+|+|+|++||||+++.++.+|+.+||+||||+|++| ||||+++|.+|+++|+.+ +||++|+
T Consensus       161 ~~EA~~~Ag~~~L~nLi~i~D~N~iqidG~t~~~~~ed~~~rf~a~GW~v~~v~DGhD~~~I~~Ai~~Ak~~~~kPt~Ii  240 (333)
T pfam00456       161 SSEASSLAGHLKLGNLIAFYDDNRISIDGETEISFTEDTAKRFEAYGWHVIEVEDGHDVEAIAAAIEEAKAEKDKPTLII  240 (333)
T ss_pred             HHHHHHHHHHCCCCCEEEEECCCCEECCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             99999999871789789997457542179845355510999987649079994699999999999999986589981698


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_conf             013345557000477110334372233212566348777854389789999997543335668876424676311111--
Q gi|254780655|r  254 CETVIGFGSPNRAGTNKVHGSALGQEEIKATRKALNWDLDPFFIPDDIMKKWRLAGLRSSQTRADWQERLSSMKSSIR--  331 (673)
Q Consensus       254 ~~T~kG~G~~~~e~~~~~HG~~l~~ee~~~~~k~lg~~~~~f~ip~~v~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~--  331 (673)
                      |+|+||+|+|++||++++||+||++||++.+|+.+||+.+||++|++|+++|+....++.+.+.+|++++..|..++|  
T Consensus       241 ~~TiiGkG~p~~eg~~~~HG~plg~ee~~~~k~~lg~~~~~F~vp~ev~~~~~~~~~~~~~~~~~W~~~~~~y~~~~Pe~  320 (333)
T pfam00456       241 CRTVIGYGSPNKQGTHDVHGAPLGADEVAALKEKLGWDYKPFEIPQEVYDAWKEKVAEGAKAEAEWNELFAAYKKAYPEE  320 (333)
T ss_pred             EEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_conf             64215158844467876568888989999999985999998528899999999999854999999999999999879899


Q ss_pred             -HCCCCHHHHHCC
Q ss_conf             -002300111077
Q gi|254780655|r  332 -KEFERRFSDALP  343 (673)
Q Consensus       332 -~e~~~~~~~~~p  343 (673)
                       +++++..++.+|
T Consensus       321 ~~e~~~~~~g~lP  333 (333)
T pfam00456       321 AAEFVRRLNGELP  333 (333)
T ss_pred             HHHHHHHHCCCCC
T ss_conf             9999999738998


No 13 
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=100.00  E-value=0  Score=580.58  Aligned_cols=637  Identities=22%  Similarity=0.261  Sum_probs=484.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHC------CCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHH
Q ss_conf             888999999999999999999738------89764313689999998433254457789887887799856520189999
Q gi|254780655|r   15 YDDDYKKMADAIRFLSMDAIENVN------SGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYA   88 (673)
Q Consensus        15 ~~~~l~~~a~~iR~~~~~~v~~a~------~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~   88 (673)
                      +.+..+|+..-|||+++.||.+||      |||+++..|++.|+.+.|.+|++=.  +.. ...|+ |+-+||+||++||
T Consensus        74 d~~~E~ri~~~iRWNa~~mV~ran~~~~~~GGHias~aS~atlyevgfnhFfr~~--~~~-~~gD~-V~~QgHasPgiyA  149 (886)
T PRK09405         74 DLELERRIRSAIRWNAMAMVLRANKKDLGLGGHIASFASSATLYEVGFNHFFRAP--NEE-DGGDL-VFFQGHASPGIYA  149 (886)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHEECCC--CCC-CCCCE-EEECCCCCHHHHH
T ss_conf             6999999999998889999986346789867438758879999986303156068--889-99887-9876877729999


Q ss_pred             HHHHCCCCCCCHHHHHHHHCC--CCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             999707688998898640003--8879889888-8998730688863147999999999999853426887678459998
Q gi|254780655|r   89 LLYLLGYQDVTIEDIKNFRTI--GSKTAGHPEY-GSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVL  165 (673)
Q Consensus        89 ~~~l~G~~~~~~e~l~~~r~~--~s~~~Ghpe~-~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~i  165 (673)
                      .-+|.||  ++.++|.+||+-  ++.++.+|.+ ...++++|+|||+|-|..+|+..|..+||+..+.-.+.-+.+|||+
T Consensus       150 rafLeGr--l~e~~L~nFR~E~~~~GlsSYPhp~lmpdfwqFpTvSmGLGp~~aiyqArf~rYl~~rgl~~~~~~kvwaf  227 (886)
T PRK09405        150 RAFLEGR--LTEEQLDNFRQEVDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAF  227 (886)
T ss_pred             HHHHCCC--CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
T ss_conf             9998178--88999998875326998778999877998788985062510789999999999998459977788738999


Q ss_pred             ECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC--CCCHHHHHHHCCCCCCCC---------------
Q ss_conf             436211434455788765220223306999627632232235567--821799886414444444---------------
Q gi|254780655|r  166 VGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLAD--STDQYARFRASGWNTLSV---------------  228 (673)
Q Consensus       166 iGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~--~~~~~~~~~a~Gw~~~~v---------------  228 (673)
                      +|||||.|+.+++|+.+|+..+|||||||+|||.+++||||...-  ...+...|++.|||||+|               
T Consensus       228 lGDgEmDEpes~gai~~A~re~LdNlifVVncNlQrLDGpVrGngkIIqELE~~FrgAGWnVIkviwG~~wd~Lfa~d~~  307 (886)
T PRK09405        228 LGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAKDTS  307 (886)
T ss_pred             ECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCCC
T ss_conf             53655575346889999998405866999977754578862685179999999885479618998215168999833785


Q ss_pred             ------------------------------------------------------CCCCHHHHHHHHHHHHHC-CCCHHHH
Q ss_conf             ------------------------------------------------------444067888888875110-2210222
Q gi|254780655|r  229 ------------------------------------------------------NGHDHHAITSTLRKAQLS-DKPTMIA  253 (673)
Q Consensus       229 ------------------------------------------------------dG~d~~~i~~a~~~ak~~-~kP~~I~  253 (673)
                                                                            .|||+.+|++|+++|.+. +|||+|+
T Consensus       308 g~L~~~m~e~~DgeyQ~~~~~~Gay~Re~ffg~~pel~~LV~~lSD~ei~~L~rGGHD~~KvyaAy~~A~~~kgrPTVIL  387 (886)
T PRK09405        308 GKLVQRMNETVDGDYQTYKAKDGAYVREHFFGKYPETAALVADMSDDDIWALNRGGHDPRKVYAAYKAAVEHKGQPTVIL  387 (886)
T ss_pred             CHHHHHHHHHCCHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             66999999840378887841879999998728997899998518999999865269998999999999973689985999


Q ss_pred             HCCCCCCCCCC-CCCCCCCCC-CCCCHHHHHHHHHHCCCCCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             01334555700-047711033-43722332125663487778-------5438978999999754333566887642467
Q gi|254780655|r  254 CETVIGFGSPN-RAGTNKVHG-SALGQEEIKATRKALNWDLD-------PFFIPDDIMKKWRLAGLRSSQTRADWQERLS  324 (673)
Q Consensus       254 ~~T~kG~G~~~-~e~~~~~HG-~~l~~ee~~~~~k~lg~~~~-------~f~ip~~v~~~~~~~~~~~~~~~~~w~~~~~  324 (673)
                      ++|+||||.+. -|+.+..|+ +.|+.|+++.+|..+++|..       ||+.|++--...+...           ++-+
T Consensus       388 A~TVKGyGlg~ageg~N~aHQ~Kkl~~e~l~~fRdrf~iPisDe~~e~~pf~~p~~dS~E~~Yl~-----------~rR~  456 (886)
T PRK09405        388 AKTIKGYGMGEAGEGKNIAHQVKKLDLDDLKHFRDRFNIPISDEQLEDLPYYKPGEDSPEIKYLH-----------ERRK  456 (886)
T ss_pred             EEEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCHHHHHHH-----------HHHH
T ss_conf             88764266674444542011003599999999999859998845513377878788999999999-----------9999


Q ss_pred             HHHHHHHHCCCCHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH---HHHHHHCCCCCCCCCCC----
Q ss_conf             63111110023001110776302355542000001355431013467888998865---54332203455567400----
Q gi|254780655|r  325 SMKSSIRKEFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSELVLEVVNDC---LPELIGGSADLTGSNGT----  397 (673)
Q Consensus       325 ~~~~~~~~e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vatr~a~g~~l~~i~~~---~p~iv~~sADl~~St~~----  397 (673)
                      .....+|....+...-.+|.  ...+..+...  ..+..++|..+|+++|..+.+.   -++||-+.+|.+.+++.    
T Consensus       457 ~LgG~lP~Rr~~~~~l~vP~--l~~f~~~~~g--sg~r~iSTTmAFvRiL~~L~rdk~ig~rIVPIvPDEARTFGMeglF  532 (886)
T PRK09405        457 ALGGYLPARRPKFESLEVPA--LSAFDALLKG--SGEREISTTMAFVRILNILLKDKEIGKRIVPIIPDEARTFGMEGLF  532 (886)
T ss_pred             HHCCCCCCCCCCCCCCCCCC--HHHHHHHHCC--CCCCCEEHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHH
T ss_conf             81899876678887689997--2556777437--8887443178999999999718144660575458630146828778


Q ss_pred             -----CCCCCCCCC----------CCCCHHHCCCCCCCHHHHHH--HHHHHHH--CC-CCCCEECCCHHH-HHHHHHHHH
Q ss_conf             -----026663445----------43200100325762002356--7879987--28-876220010035-553001245
Q gi|254780655|r  398 -----KTSQMKAIS----------KSDFSGRYLHYGVREHAMAA--AMNGIAL--HK-GLAPYSGTFMVF-SDYSRPAIR  456 (673)
Q Consensus       398 -----~~~~~~~~~----------~~~~p~r~i~~GIaE~~~~~--~aaGla~--~~-g~~p~~~tf~~F-~~~~~~~ir  456 (673)
                           +......+.          ++...||.++.||+|.++.+  +|+|.+.  |+ .++||...|++| +||.-|.+.
T Consensus       533 rq~GIys~~GQ~Y~p~D~~~l~~YkEs~~GQiLeeGI~Eaga~~s~~AagtSys~~g~pmIPfyi~YsmFGfQRvgDl~W  612 (886)
T PRK09405        533 RQIGIYNPHGQKYTPVDRDQVMYYKEDKDGQILQEGINEAGAMASWIAAATSYSTHNLPMIPFYIYYSMFGFQRIGDLAW  612 (886)
T ss_pred             HHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHH
T ss_conf             64376677412267013266664210888714221112341699999875326535985303667630004546657888


Q ss_pred             HHHHHHCCCEEEC-CCCCCCCCCCCCHHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCC-----CCCEEEEECC
Q ss_conf             4111100001302-454333333331010002221011101221121120124577776520256-----7834999524
Q gi|254780655|r  457 LASLMGIRVIHVL-THDSIGLGEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEK-----NRPSVLSLSR  530 (673)
Q Consensus       457 ~~al~~~~v~~v~-th~gi~~G~DGpTHq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~-----~gP~~ir~~R  530 (673)
                      .++.|..+-.+++ |-.+..+...|--||-..-.-+-..+|||.-+.|+.+.|++.+++..++..     +--.||.+..
T Consensus       613 aagD~~aRGFLiGaTaGRTTL~GEGLQHqDGhS~l~astiPnc~sYDPafayElavIv~~gl~rMy~~~edvfYYiT~~N  692 (886)
T PRK09405        613 AAGDQQARGFLLGGTAGRTTLNGEGLQHEDGHSHILASTIPNCISYDPAFAYEVAVIVQDGLRRMYGEQENVFYYITVMN  692 (886)
T ss_pred             HHHHHCCCEEEEEECCCCCEECCCCCCCCCCCCHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             86331257289840788732274110366775547886367760206337889999999999999538876499997467


Q ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEECC--CCCEEEEECCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCHHCC-------
Q ss_conf             444334566553221234737998569--97299995268899999999999973-99439985746581000-------
Q gi|254780655|r  531 QNLPFLRTQYESNNLCALGAYDYISTP--NAQVTIFSSGSELKIAVEACEILSSR-NISTRVVSVPCFELFFE-------  600 (673)
Q Consensus       531 ~~~p~~~~~~~~~~~~~~G~~~~~~~~--~~dv~iia~G~~v~~al~aa~~L~~~-Gi~~~Vi~~~s~k~ld~-------  600 (673)
                      .+.+.........+.+.+|.|.+...+  ++.|.|+++|+.+.++++|+++|+++ ||.+.|+|++|++.|.+       
T Consensus       693 Eny~~P~~P~g~eegIikG~Y~~~~~~~~~~~vqLlgSG~il~evl~Aa~~L~~d~gV~adVWSvTS~~ELrRd~~~~eR  772 (886)
T PRK09405        693 ENYVQPAMPEGAEEGIIKGMYKLETGEGGKGKVQLLGSGTILREVIEAAEILAKDYGVAADVWSVTSFNELARDGQDVER  772 (886)
T ss_pred             CCCCCCCCCCCHHHHHHHCEEECCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHH
T ss_conf             65668678986288786320442336788961799935498999999999998831986218954888999998999999


Q ss_pred             ---------CCHHHHHHHCCCC-CEEEEECCC---CHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHCCCCHHHHHHHH
Q ss_conf             ---------8688999643679-779997286---027899984579818983577676888899998099989999999
Q gi|254780655|r  601 ---------QSDSYRAQIIGSS-PIKIAIEAG---LRQGWDAFIGSDGSFIGMQGFGASGSCDLLYQHFGINAIAIVDMV  667 (673)
Q Consensus       601 ---------~~~~~~~~il~~~-~~~vtiE~g---~~~g~~~~~~~~~~~igid~Fg~sg~~~el~~~~Gld~~~I~~~i  667 (673)
                               +...|..++|... .++|++.+.   +...+..|+.....++|.|.||.|.+++.|.++|.+|+++|+-++
T Consensus       773 ~N~L~P~~~~r~~yv~~~l~~~~gPvvAasDYmr~~~dqIr~~vp~~y~~LGTDGFGRSDTR~~LR~fFEVD~~~Ivvaa  852 (886)
T PRK09405        773 WNMLHPTEEPRVPYVTQVLNDAQGPVIAATDYMKAFAEQIRAFVPRDYVVLGTDGFGRSDTREALRRFFEVDAYYVVVAA  852 (886)
T ss_pred             HHHCCCCCCCCCCHHHHHHCCCCCCEEEECHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHCCCCHHHHHHHH
T ss_conf             97039987777678999847999987996676876499999746898656358888754247999987363789999999


Q ss_pred             HHHHC
Q ss_conf             99848
Q gi|254780655|r  668 ERKLS  672 (673)
Q Consensus       668 ~~~L~  672 (673)
                      +..|+
T Consensus       853 L~aLa  857 (886)
T PRK09405        853 LKALA  857 (886)
T ss_pred             HHHHH
T ss_conf             99999


No 14 
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=100.00  E-value=0  Score=575.89  Aligned_cols=641  Identities=21%  Similarity=0.249  Sum_probs=498.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHC------CCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHH
Q ss_conf             8999999999999999999738------8976431368999999843325445778988788779985652018999999
Q gi|254780655|r   17 DDYKKMADAIRFLSMDAIENVN------SGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYALL   90 (673)
Q Consensus        17 ~~l~~~a~~iR~~~~~~v~~a~------~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~~   90 (673)
                      +..+|+-..+||+++.||-+++      |||++++.|++.|+.++|.+|++  +++.+ -+.| .|+-+||+||++||.-
T Consensus        76 ~lErrir~~~rWna~amvlRaskk~l~lGGH~sSfaSsatlyev~fnhffr--~~~~~-~ggD-lVf~qgHaSPg~yAra  151 (887)
T COG2609          76 ELERRIRSLIRWNAHAMVLRASKKGLELGGHIASFASSATLYEVGFNHFFR--AKSEK-DGGD-LVFFQGHASPGIYARA  151 (887)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC--CCCCC-CCCC-EEEEECCCCCHHHHHH
T ss_conf             999999999999999999970178887463034134378999998887735--76778-9986-6997067880488999


Q ss_pred             HHCCCCCCCHHHHHHHHCCCC--CCCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf             970768899889864000388--798898888-99873068886314799999999999985342688767845999843
Q gi|254780655|r   91 YLLGYQDVTIEDIKNFRTIGS--KTAGHPEYG-SCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVG  167 (673)
Q Consensus        91 ~l~G~~~~~~e~l~~~r~~~s--~~~Ghpe~~-~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiG  167 (673)
                      +|.||  ++.|+|.+||+..+  .+|.+|.+. ..++++|+|+|+|-|..+|+-.|...|||.+|.-++..|.+|||++|
T Consensus       152 fLeGR--lseeqLdnFRqev~g~gl~SYPhp~lmpdfwqFpTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afLG  229 (887)
T COG2609         152 FLEGR--LTEEQLDNFRQEVDGKGLSSYPHPKLMPDFWQFPTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLG  229 (887)
T ss_pred             HHHCC--CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEC
T ss_conf             88142--5699998899751688877899876783201367533153289999999999999856886777873999955


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC--CCCCHHHHHHHCCCCCCCC-----------------
Q ss_conf             621143445578876522022330699962763223223556--7821799886414444444-----------------
Q gi|254780655|r  168 DGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLA--DSTDQYARFRASGWNTLSV-----------------  228 (673)
Q Consensus       168 DG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~--~~~~~~~~~~a~Gw~~~~v-----------------  228 (673)
                      ||||.|+.+.+|+.+|+.++|+|||+++|||.+++||+|..-  ....+...|++.||+|+.|                 
T Consensus       230 DgEmDEpes~gAi~~A~re~LdNlifVincNlQrLDgpVrgngkiiqelE~~FrgaGWnVikviWg~~wd~ll~~d~~gk  309 (887)
T COG2609         230 DGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGRRWDELLAKDTGGK  309 (887)
T ss_pred             CCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCCH
T ss_conf             75567703568999999846675499996561105884147735499999886037851899972440788860367446


Q ss_pred             ----------------------------------------------------CCCCHHHHHHHHHHHHHCC-CCHHHHHC
Q ss_conf             ----------------------------------------------------4440678888888751102-21022201
Q gi|254780655|r  229 ----------------------------------------------------NGHDHHAITSTLRKAQLSD-KPTMIACE  255 (673)
Q Consensus       229 ----------------------------------------------------dG~d~~~i~~a~~~ak~~~-kP~~I~~~  255 (673)
                                                                          .|||...|+.|+++|+..+ +||+|+++
T Consensus       310 L~~~m~e~~dgdyqt~ka~dGayvRehff~~~pe~~aLVa~~tD~diw~L~rGGHD~~kv~aA~~~A~~~kg~PtvilA~  389 (887)
T COG2609         310 LRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALVADMTDDDIWALNRGGHDPEKVYAAFKKAQEHKGRPTVILAK  389 (887)
T ss_pred             HHHHHHHCCCCHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf             99999856552366640056399999871567588999986368899998637998799999999985378997599976


Q ss_pred             CCCCCCCC-CCCCCCCCCCC-CCCHHHHHHHHHHCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             33455570-00477110334-372233212566348777854389789999-9975433356688764246763111110
Q gi|254780655|r  256 TVIGFGSP-NRAGTNKVHGS-ALGQEEIKATRKALNWDLDPFFIPDDIMKK-WRLAGLRSSQTRADWQERLSSMKSSIRK  332 (673)
Q Consensus       256 T~kG~G~~-~~e~~~~~HG~-~l~~ee~~~~~k~lg~~~~~f~ip~~v~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~  332 (673)
                      |+||+|.+ ..|+....|.. .+..++++.+|..++.+..     |+..+. +-.+...+...+.-...+.+......|.
T Consensus       390 TIKGyglg~~~eg~n~aHq~kkm~~~~l~~~Rdr~~ipi~-----d~e~e~lpy~~~g~~s~E~~yl~~rr~al~g~~p~  464 (887)
T COG2609         390 TIKGYGLGEAAEGKNIAHQVKKMTPDQLKEFRDRFGIPVS-----DAELEELPYYHFGEDSPEYKYLHARRAALGGYLPA  464 (887)
T ss_pred             EECCCCCCHHHCCCCHHHHHHCCCHHHHHHHHHHCCCCCC-----HHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCH
T ss_conf             3024667701013663555623899999999861599774-----45530377677789948899999999865887701


Q ss_pred             CCCCHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH---HHHHHCCCCCCCCCCC---------CCC
Q ss_conf             0230011107763023555420000013554310134678889988655---4332203455567400---------026
Q gi|254780655|r  333 EFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSELVLEVVNDCL---PELIGGSADLTGSNGT---------KTS  400 (673)
Q Consensus       333 e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vatr~a~g~~l~~i~~~~---p~iv~~sADl~~St~~---------~~~  400 (673)
                      ... .+...+|..   .+.++..........++|..+|..+++.+.+..   ++||-.++|.+.+++.         +..
T Consensus       465 rr~-~~t~~l~vP---~l~~~~a~~~~~g~~iSTtmAfvr~l~~llkdk~ig~riVpiipDearTfgmeg~f~~~GIy~~  540 (887)
T COG2609         465 RRP-KFTPALPVP---SLSDFQALLKGQGEEISTTMAFVRILNELLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGIYNP  540 (887)
T ss_pred             HCC-CCCCCCCCC---CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCHHHHHHCCCCCC
T ss_conf             104-678875688---5788999984367510348999999999972114467241346742320560443320231167


Q ss_pred             CCCCCCC----------CCCHHHCCCCCCCHHHHHH--HHHHHHH--CC-CCCCEECCCHHH-HHHHHHHHHHHHHHHCC
Q ss_conf             6634454----------3200100325762002356--7879987--28-876220010035-55300124541111000
Q gi|254780655|r  401 QMKAISK----------SDFSGRYLHYGVREHAMAA--AMNGIAL--HK-GLAPYSGTFMVF-SDYSRPAIRLASLMGIR  464 (673)
Q Consensus       401 ~~~~~~~----------~~~p~r~i~~GIaE~~~~~--~aaGla~--~~-g~~p~~~tf~~F-~~~~~~~ir~~al~~~~  464 (673)
                      ....|.+          +...|+.++.||.|.++++  +|+|.+.  |+ .++||..-|++| +||.-|.+..+|.|..+
T Consensus       541 ~GQ~y~p~d~~~~~~ykea~~GQiLqeGInE~ga~~sw~AagtSys~~~~pmiPfyi~YsmFgfqRigD~~waA~dq~AR  620 (887)
T COG2609         541 NGQQYTPQDRDQVMYYKEAESGQILQEGINEAGAFASWIAAGTSYSTHGEPMIPFYIYYSMFGFQRIGDLLWAAGDQDAR  620 (887)
T ss_pred             CCCCCCCCCHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHC
T ss_conf             77657745426554100187755287521220379999987525433796412564542124465588899887766411


Q ss_pred             -CEEECCCCCCCCCCCCCHHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCC------CCCEEEEECCCCCCCCC
Q ss_conf             -01302454333333331010002221011101221121120124577776520256------78349995244443345
Q gi|254780655|r  465 -VIHVLTHDSIGLGEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEK------NRPSVLSLSRQNLPFLR  537 (673)
Q Consensus       465 -v~~v~th~gi~~G~DGpTHq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~------~gP~~ir~~R~~~p~~~  537 (673)
                       .++.+|.++..+-..|--||...-.-.--.+|||..+.|+.+.|++.+++++++..      +.-.||++...+.+...
T Consensus       621 gFLLgaTagrtTLngEGlqHedghS~l~~~~ip~~~tYdPafayEvAVI~~~g~~rmy~~~qe~~~yYit~~ne~~~qPa  700 (887)
T COG2609         621 GFLLGATAGRTTLNGEGLQHEDGHSHLQAMTIPNCISYDPAFAYEVAVIMQDGLRRMYGEGQENVFYYITLSNENYPQPA  700 (887)
T ss_pred             CEEEEECCCCCEECCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCC
T ss_conf             03665257873337653345555431665147885124843788989999999999723566780799996467778999


Q ss_pred             CCCCCCCCCCCCCEEEEECC---CCCEEEEECCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHCC-------------
Q ss_conf             66553221234737998569---9729999526889999999999997-399439985746581000-------------
Q gi|254780655|r  538 TQYESNNLCALGAYDYISTP---NAQVTIFSSGSELKIAVEACEILSS-RNISTRVVSVPCFELFFE-------------  600 (673)
Q Consensus       538 ~~~~~~~~~~~G~~~~~~~~---~~dv~iia~G~~v~~al~aa~~L~~-~Gi~~~Vi~~~s~k~ld~-------------  600 (673)
                      ......+.+.+|.|.+...+   +..|.|+++|..+.+|++|+++|++ .|+.+.|++++|++.|.+             
T Consensus       701 mp~gae~gI~kG~Y~l~~~~~~~~~~vqll~SGai~~ea~~AaelL~~d~gv~adl~svtS~~eL~rdg~a~~R~n~lhP  780 (887)
T COG2609         701 MPEGAEEGIIKGIYKLETPGGQGKAKVQLLGSGAILREALEAAELLAKDYGVEADLWSVTSFDELARDGQAAERWNLLHP  780 (887)
T ss_pred             CCCCCHHHHHHCEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHCCHHHHHHHHHCCC
T ss_conf             88861665654215753378788734899724130799999999875321656673533668887303577788885189


Q ss_pred             ---CCHHHHHHHCCCCCEEEEECCCCHHH---HHHHHCCCCCEEEECCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf             ---86889996436797799972860278---9998457981898357767688889999809998999999999848
Q gi|254780655|r  601 ---QSDSYRAQIIGSSPIKIAIEAGLRQG---WDAFIGSDGSFIGMQGFGASGSCDLLYQHFGINAIAIVDMVERKLS  672 (673)
Q Consensus       601 ---~~~~~~~~il~~~~~~vtiE~g~~~g---~~~~~~~~~~~igid~Fg~sg~~~el~~~~Gld~~~I~~~i~~~L~  672 (673)
                         +...|...+|+...++|++.+++...   +..+++...+++|.|+||.|+++++|+++|++|+..|+.++...|+
T Consensus       781 ~~~~~v~yv~~~L~~~~p~Va~tDy~~~~a~qir~~vp~~y~vLGtdgFGrSdsr~~Lr~~fevDa~~vv~Aal~~La  858 (887)
T COG2609         781 TETPRVPYVAQVLNADGPVVAVTDYMKLFAEQIRAVVPQRYRVLGTDGFGRSDSRENLRRFFEVDAYYVVVAALSALA  858 (887)
T ss_pred             CCCCCCHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             877760489987436897688520037689997510687159941477786676799999844657899999999983


No 15 
>TIGR00759 aceE 2-oxo-acid dehydrogenase E1 component, homodimeric type; InterPro: IPR004660   Most members of this family are pyruvate dehydrogenase complex, E1 component. It includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogenase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of Escherichia coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity. ; GO: 0016491 oxidoreductase activity.
Probab=100.00  E-value=0  Score=576.81  Aligned_cols=635  Identities=22%  Similarity=0.266  Sum_probs=489.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHC------CCCCCCCCCHHHHHHHHHHHHEEECCCCCCC-CCCCEEEEECCCCHHHHH
Q ss_conf             888999999999999999999738------8976431368999999843325445778988-788779985652018999
Q gi|254780655|r   15 YDDDYKKMADAIRFLSMDAIENVN------SGHPGLPMGMADVVTALFTQCMVFDPQCPYW-PNRDRFVLSAGHGSMLYY   87 (673)
Q Consensus        15 ~~~~l~~~a~~iR~~~~~~v~~a~------~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~-~~rDr~v~s~GH~s~~~Y   87 (673)
                      +.|..+|+-+.+||+++.||.+||      |||+++..|+|+|+-+-|.||+|=.. .+.. ..+| +||-.||.||++|
T Consensus        71 D~elErRIRs~~RWNA~aMV~RA~kk~~~~GGHistyaSaA~lyeVGFNHFFRg~~-~~~~Gr~gD-LVF~QGHaaPG~Y  148 (905)
T TIGR00759        71 DLELERRIRSIIRWNAIAMVLRANKKDLDLGGHISTYASAATLYEVGFNHFFRGKS-EGEGGRGGD-LVFFQGHAAPGIY  148 (905)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCC-EEEECCCCCCHHH
T ss_conf             54577888778879999999874078888653076899999997211133402688-888884344-3467887671378


Q ss_pred             HHHHHCCCCCCCHHHHHHHHCC----CCCCCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
Q ss_conf             9999707688998898640003----887988--9888899873068886314799999999999985342688767845
Q gi|254780655|r   88 ALLYLLGYQDVTIEDIKNFRTI----GSKTAG--HPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHY  161 (673)
Q Consensus        88 ~~~~l~G~~~~~~e~l~~~r~~----~s~~~G--hpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~  161 (673)
                      |.-.|.||  |+.|+|.+|||-    |..|+.  ||.. +.+|++|+|+|+|-|-=+|+..|.-.|||..|--++-.|.+
T Consensus       149 ARAFLEGR--Lt~~QLd~FRQE~~~~G~GLsSYPHP~L-MPdFWqFPTVSMGLGPi~AIYQARF~kYL~~RGlk~~~d~~  225 (905)
T TIGR00759       149 ARAFLEGR--LTEEQLDNFRQEVSHVGDGLSSYPHPWL-MPDFWQFPTVSMGLGPINAIYQARFLKYLENRGLKDTSDQK  225 (905)
T ss_pred             HHHHHHCC--CCHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCE
T ss_conf             99854215--6688860215101557758887556778-84404698765664145799998987765404774202775


Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC--CCCCHHHHHHHCCCCCCCC-----------
Q ss_conf             999843621143445578876522022330699962763223223556--7821799886414444444-----------
Q gi|254780655|r  162 TYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLA--DSTDQYARFRASGWNTLSV-----------  228 (673)
Q Consensus       162 v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~--~~~~~~~~~~a~Gw~~~~v-----------  228 (673)
                      |||++|||||+|..+--|+.+|+..+|||||+++|||-+.+||||..-  ....+...|++.|||||+|           
T Consensus       226 VwaFLGDGEMDEPES~Ga~~~AarE~LDNL~FviNCNLQRLDGPVrGNGKIIQELEslF~GAGWNVIKV~WGS~WD~Ll~  305 (905)
T TIGR00759       226 VWAFLGDGEMDEPESKGAITFAAREKLDNLVFVINCNLQRLDGPVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALLA  305 (905)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHHHH
T ss_conf             89984787557187799987665523754178863213036875415741201124312688831788840885689987


Q ss_pred             ----------------------------------------------------------CCCCHHHHHHHHHHHHHC-CCC
Q ss_conf             ----------------------------------------------------------444067888888875110-221
Q gi|254780655|r  229 ----------------------------------------------------------NGHDHHAITSTLRKAQLS-DKP  249 (673)
Q Consensus       229 ----------------------------------------------------------dG~d~~~i~~a~~~ak~~-~kP  249 (673)
                                                                                -|||+.+|++|+++|+.. +||
T Consensus       306 ~D~~G~L~~~m~~~vDG~yQT~kA~DGaY~REHFFn~~Pel~ALV~dmsD~dIw~LnRGGHD~~K~YAAy~~A~~~KG~P  385 (905)
T TIGR00759       306 RDTSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWALNRGGHDPRKVYAAYAAAQEHKGKP  385 (905)
T ss_pred             HCCCCHHHHHHHHCCCCCEEECCCCCCCEECCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf             15133789998525897300000268863104346888789998616787899974067997388999999986289984


Q ss_pred             HHHHHCCCCCCCCC-CCCCCCCCCC-CCCCHHHHHHHHHHCCCCCCCCCCCHHHHHH----HHHHHHHHHHHHHHH----
Q ss_conf             02220133455570-0047711033-4372233212566348777854389789999----997543335668876----
Q gi|254780655|r  250 TMIACETVIGFGSP-NRAGTNKVHG-SALGQEEIKATRKALNWDLDPFFIPDDIMKK----WRLAGLRSSQTRADW----  319 (673)
Q Consensus       250 ~~I~~~T~kG~G~~-~~e~~~~~HG-~~l~~ee~~~~~k~lg~~~~~f~ip~~v~~~----~~~~~~~~~~~~~~w----  319 (673)
                      |+|++||+||||.+ ..|...-.|+ +.|.-|.++.+|..+.+|..     |+-.+.    ..+....-...+.++    
T Consensus       386 TvILAkTiKGYg~g~~~e~rN~AHQ~KKl~~~~lk~fRD~f~lPls-----D~QvE~nPy~l~Yy~p~e~s~E~~Yl~~~  460 (905)
T TIGR00759       386 TVILAKTIKGYGLGDAAEARNVAHQVKKLEVDALKEFRDRFELPLS-----DAQVEKNPYLLPYYHPGEGSPEVRYLRAR  460 (905)
T ss_pred             EEEECCCCCCCCCCHHHHHCCHHHHHCCCCHHHHHHHHHHCCCCCC-----HHHHHHCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             7860543466467643322013553056687889842000248877-----67773078768731388877778999999


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHCCCCCCCC-CCCCHHHHHHHHHHHHHHHH---HHHHHCCC------
Q ss_conf             424676311111002300111077630235554200000135-54310134678889988655---43322034------
Q gi|254780655|r  320 QERLSSMKSSIRKEFERRFSDALPDCFDNAFINLKKKFEHSK-PMIATRKSSELVLEVVNDCL---PELIGGSA------  389 (673)
Q Consensus       320 ~~~~~~~~~~~~~e~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~vatr~a~g~~l~~i~~~~---p~iv~~sA------  389 (673)
                      -+.+.++-|+.+.+    ....++-.-.+.+..+....  .. ..+||..|+-.+|+.+-+.-   |.||=+-|      
T Consensus       461 R~~LgG~~P~Rr~k----~~~~L~vP~l~~f~~l~~~~--~~G~evSTTMA~VR~l~~lLkdK~IG~~iVPIvpDEARTF  534 (905)
T TIGR00759       461 RQALGGYLPARRTK----FAEKLTVPALEVFGALLKGS--GEGREVSTTMAFVRILNELLKDKEIGKRIVPIVPDEARTF  534 (905)
T ss_pred             HHHCCCCCCCCCCC----CCCCCCCCCHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC
T ss_conf             97438855665777----75566798567889998607--8887111688999999997237787886632206744412


Q ss_pred             ---CCCCCCCCCCCCCCCCCCCC----------CHHHCCCCCCCHHHHHH--HHHHHH--HCC-CCCCEECCCHHH-HHH
Q ss_conf             ---55567400026663445432----------00100325762002356--787998--728-876220010035-553
Q gi|254780655|r  390 ---DLTGSNGTKTSQMKAISKSD----------FSGRYLHYGVREHAMAA--AMNGIA--LHK-GLAPYSGTFMVF-SDY  450 (673)
Q Consensus       390 ---Dl~~St~~~~~~~~~~~~~~----------~p~r~i~~GIaE~~~~~--~aaGla--~~~-g~~p~~~tf~~F-~~~  450 (673)
                         -|..+.|++....+.|.+.+          -.||.++-||.|..+++  +|||-+  .|+ -++||+.-|||| +||
T Consensus       535 GM~~LFrqiGIYsp~GQ~Y~P~D~~~l~~YkEs~~GQ~L~EGInEaGA~~SWiAAaTSYa~hg~PMIPfYIyYSMFGfQR  614 (905)
T TIGR00759       535 GMEGLFRQIGIYSPNGQKYTPEDADSLLAYKESKDGQILQEGINEAGAMASWIAAATSYATHGEPMIPFYIYYSMFGFQR  614 (905)
T ss_pred             CHHHCCCCCCEECCCCCEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHH
T ss_conf             50221374530578987451034334677645026854131055676777799986456554876541577302764015


Q ss_pred             HHHHHHHHHHHHCCCEEECCCCCCC-C-C-----CCCCHH-HHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCC--
Q ss_conf             0012454111100001302454333-3-3-----333101-0002221011101221121120124577776520256--
Q gi|254780655|r  451 SRPAIRLASLMGIRVIHVLTHDSIG-L-G-----EDGPTH-QPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEK--  520 (673)
Q Consensus       451 ~~~~ir~~al~~~~v~~v~th~gi~-~-G-----~DGpTH-q~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~--  520 (673)
                      .=|-+.-||-|..+=.+++.-+|=+ + |     +||-|| |+.       .||||.-|.||.+.|++.+++.++...  
T Consensus       615 iGDl~WAAADQ~ARGFllGaTAGRTTL~GEGLQH~DGhSl~~~~-------~~Pnc~~YDPaFAyEvAVI~~~Gl~RMy~  687 (905)
T TIGR00759       615 IGDLCWAAADQRARGFLLGATAGRTTLNGEGLQHEDGHSLVQAA-------TIPNCIAYDPAFAYEVAVIMEDGLRRMYG  687 (905)
T ss_pred             HHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCHHHHHHHH-------HCCCCEECCCCHHHHHHHHHHHHHHHHCC
T ss_conf             77899988865320000023424300035664100036788973-------53743101751023367878778973236


Q ss_pred             ----CCCEEEEECCCCC--CCCCCC---CCCCCCCCCCCEEEEEC----CCCCEEEEECCHHHHHHHHHHHHHHHC-CCC
Q ss_conf             ----7834999524444--334566---55322123473799856----997299995268899999999999973-994
Q gi|254780655|r  521 ----NRPSVLSLSRQNL--PFLRTQ---YESNNLCALGAYDYIST----PNAQVTIFSSGSELKIAVEACEILSSR-NIS  586 (673)
Q Consensus       521 ----~gP~~ir~~R~~~--p~~~~~---~~~~~~~~~G~~~~~~~----~~~dv~iia~G~~v~~al~aa~~L~~~-Gi~  586 (673)
                          +--.||..-..+.  |.++..   ....+.+.+|-|.....    ....|.|++||+.+..+++||++|+++ ||.
T Consensus       688 E~qed~FyY~Tv~NE~y~~P~mP~~lsh~~~~~gi~kG~Yrf~~~~~~~~~~~vQLLgSG~i~r~v~~Aa~lLa~DyGV~  767 (905)
T TIGR00759       688 EKQEDVFYYVTVLNENYVQPPMPEGLSHEEAEEGILKGLYRFETATEEKAKGRVQLLGSGAIMREVIEAAELLAADYGVA  767 (905)
T ss_pred             CCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCE
T ss_conf             67442247664505788878887243534426777740344100001047871367524568999999999987517831


Q ss_pred             EEEEECCCCCHHCCC----------------CHHHHHHHCCC-CCE--EEEECCCC---HHHHHHHHC-CCCCEEEECCC
Q ss_conf             399857465810008----------------68899964367-977--99972860---278999845-79818983577
Q gi|254780655|r  587 TRVVSVPCFELFFEQ----------------SDSYRAQIIGS-SPI--KIAIEAGL---RQGWDAFIG-SDGSFIGMQGF  643 (673)
Q Consensus       587 ~~Vi~~~s~k~ld~~----------------~~~~~~~il~~-~~~--~vtiE~g~---~~g~~~~~~-~~~~~igid~F  643 (673)
                      +.|+|++|++-|.++                -..|..++|.+ .-+  +|++.+.+   ...+..||- ....+||.|+|
T Consensus       768 sDvwSvtSf~ELaRdg~dv~R~nlLHP~e~~~vsyVA~~L~~~~aPGv~iA~tDYvra~a~qir~~VP~~~Y~tLGTDGF  847 (905)
T TIGR00759       768 SDVWSVTSFTELARDGHDVERWNLLHPTETPRVSYVAQVLNEADAPGVVIASTDYVRAFAEQIRPYVPARKYVTLGTDGF  847 (905)
T ss_pred             EEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCHHHHCHHHHHHCCCCCCCEEECCCCC
T ss_conf             45520587567656789998864258788887648989741279980699852212303576631278877368315788


Q ss_pred             CCCCCHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf             67688889999809998999999999848
Q gi|254780655|r  644 GASGSCDLLYQHFGINAIAIVDMVERKLS  672 (673)
Q Consensus       644 g~sg~~~el~~~~Gld~~~I~~~i~~~L~  672 (673)
                      |.|-+++.|.++|..|++.+|-++++.|+
T Consensus       848 GRSDtR~~LR~fFEVD~~~VVlA~L~aLa  876 (905)
T TIGR00759       848 GRSDTRENLRHFFEVDAKSVVLAALEALA  876 (905)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             60168998764411055057788899998


No 16 
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=100.00  E-value=0  Score=561.24  Aligned_cols=253  Identities=48%  Similarity=0.791  Sum_probs=240.9

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             99999999999973889764313689999998433254457789887887799856520189999999707688998898
Q gi|254780655|r   24 DAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYALLYLLGYQDVTIEDI  103 (673)
Q Consensus        24 ~~iR~~~~~~v~~a~~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~~~l~G~~~~~~e~l  103 (673)
                      ++||.++++||.++|+||+|++||+|||+++||.++|+++|.+|+|++|||||||+||++|++|++++++|+  ++.++|
T Consensus         1 ~~iR~~il~~v~~~~~GH~g~~lS~vei~~aLy~~~~~~~~~~~~~~~rDr~ilskGH~~~~~Ya~l~~~G~--~~~~~L   78 (255)
T cd02012           1 NRIRRLSIDMVQKAGSGHPGGSLSAADILAVLYFKVLKYDPADPKWPNRDRFVLSKGHASPALYAVLALAGY--LPEEDL   78 (255)
T ss_pred             CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCC--CCHHHH
T ss_conf             958999999999729984036779999999999877424878999878885999662068999999999489--988998


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             64000388798898888998730688863147999999999999853426887678459998436211434455788765
Q gi|254780655|r  104 KNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFA  183 (673)
Q Consensus       104 ~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A  183 (673)
                      .+||+.+|+++|||++..+|||++||||||||+|+|+|||+|.|+.+.       +++|||++|||||+||++|||+++|
T Consensus        79 ~~~~~~gs~l~ghp~~~~~~gi~~stGsLG~gls~a~G~A~a~k~~~~-------~~~v~~~iGDGel~EG~~wEAl~~A  151 (255)
T cd02012          79 KTFRQLGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEKLLGF-------DYRVYVLLGDGELQEGSVWEAASFA  151 (255)
T ss_pred             HHCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCC-------CCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf             414579997899999899999651787537789999999999986288-------8717999425110331289999998


Q ss_pred             HHHCCCCEEEEEECCCCCCCCCCCCCCC-CCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCHHHHHCCCCCCC
Q ss_conf             2202233069996276322322355678-21799886414444444444067888888875110-221022201334555
Q gi|254780655|r  184 GHLGLSKLIVLWDNNGISIDGPISLADS-TDQYARFRASGWNTLSVNGHDHHAITSTLRKAQLS-DKPTMIACETVIGFG  261 (673)
Q Consensus       184 ~~~~l~nli~i~d~N~~si~~~~~~~~~-~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak~~-~kP~~I~~~T~kG~G  261 (673)
                      ++++|+|||+|+|+|++|+++++..... +++.++|++|||+|++|||||+++|.+|+++++.. +||++|+++|+||+|
T Consensus       152 ~~~~L~nLi~ivD~N~~~~~g~~~~~~~~~~l~~~~~sfG~~v~~vdGhd~~~i~~a~~~a~~~~~kP~~I~~~T~KGkG  231 (255)
T cd02012         152 GHYKLDNLIAIVDSNRIQIDGPTDDILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIAKTIKGKG  231 (255)
T ss_pred             HHCCCCCEEEEECCCCCEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCC
T ss_conf             55587756999868982625603025476889999996698111017999999999999998679995899999651148


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             700047711033437223321256
Q gi|254780655|r  262 SPNRAGTNKVHGSALGQEEIKATR  285 (673)
Q Consensus       262 ~~~~e~~~~~HG~~l~~ee~~~~~  285 (673)
                      +|++||+.+||+.++++||++.+|
T Consensus       232 ~~~~E~~~~~H~~~~~~~e~~~a~  255 (255)
T cd02012         232 VPFMENTAKWHGKPLGEEEVELAK  255 (255)
T ss_pred             CCHHCCCCCCCCCCCCHHHHHHHC
T ss_conf             823219972006999989999629


No 17 
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=100.00  E-value=0  Score=529.12  Aligned_cols=629  Identities=22%  Similarity=0.260  Sum_probs=479.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHC------CCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHH
Q ss_conf             88999999999999999999738------897643136899999984332544577898878877998565201899999
Q gi|254780655|r   16 DDDYKKMADAIRFLSMDAIENVN------SGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYAL   89 (673)
Q Consensus        16 ~~~l~~~a~~iR~~~~~~v~~a~------~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~   89 (673)
                      .+..+|+.+-|||+++.||.+||      |||+++..|++.|+.+-|.+|++=. .++.  ..| +|+-.||.||++|+.
T Consensus        86 ~~lE~ri~~~iRWNA~amV~rAn~~~~~lGGHIstyaS~AtlyevGfNhFfrg~-~~~~--~gD-~v~fQgH~sPGiYaR  161 (898)
T PRK13012         86 LALEERLAAILRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRGR-GDAG--GGD-LVYFQPHSAPGVYAR  161 (898)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCEEEECC-CCCC--CCC-EEEECCCCCCHHHHH
T ss_conf             999999999988899999998426788867417757768999985143067468-8899--987-799758888158899


Q ss_pred             HHHCCCCCCCHHHHHHHHCC--CCCCCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             99707688998898640003--887988--98888998730688863147999999999999853426887678459998
Q gi|254780655|r   90 LYLLGYQDVTIEDIKNFRTI--GSKTAG--HPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVL  165 (673)
Q Consensus        90 ~~l~G~~~~~~e~l~~~r~~--~s~~~G--hpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~i  165 (673)
                      -.|.||  ++.++|.+||+-  +..++.  || +-+.++++|.|.|+|-|--.|+..|.-.|||..|.-.+..+.+|||+
T Consensus       162 afLEGR--l~e~ql~~FRqE~~g~GlsSYPHP-~lMPdfWqfPTvSMGLgpi~aIyqArf~kYL~~Rgl~~~~~~kVw~f  238 (898)
T PRK13012        162 AFLEGR--LSEAQLDHFRQEIAGPGLSSYPHP-WLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLKDTSGRKVWGF  238 (898)
T ss_pred             HHHHCC--CCHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
T ss_conf             987067--889999888876348998899986-65864467784045644889999999999998579977777708999


Q ss_pred             ECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC--CCHHHHHHHCCCCCCCC---------------
Q ss_conf             4362114344557887652202233069996276322322355678--21799886414444444---------------
Q gi|254780655|r  166 VGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADS--TDQYARFRASGWNTLSV---------------  228 (673)
Q Consensus       166 iGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~--~~~~~~~~a~Gw~~~~v---------------  228 (673)
                      +|||||.|..+.-|+++|+..+|||||+++|||-+.+||||..--.  ..+...|++.|||||+|               
T Consensus       239 ~GDGEmDEPEs~gai~lA~rE~LDNLifVvNCNLQRLDGPVrGNgkIiqELE~~FrGAGWnVIKviWGs~WD~Ll~~D~~  318 (898)
T PRK13012        239 FGDGEMDEPESIGALSLAAREGLDNLVFVINCNLQRLDGPVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTT  318 (898)
T ss_pred             ECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHCCCC
T ss_conf             55876688311235556666136875999956750158873686289999998742289537997367866789725885


Q ss_pred             ------------------------------------------------------CCCCHHHHHHHHHHHHH-CCCCHHHH
Q ss_conf             ------------------------------------------------------44406788888887511-02210222
Q gi|254780655|r  229 ------------------------------------------------------NGHDHHAITSTLRKAQL-SDKPTMIA  253 (673)
Q Consensus       229 ------------------------------------------------------dG~d~~~i~~a~~~ak~-~~kP~~I~  253 (673)
                                                                            .|||...|+.|+++|.+ .++||+|.
T Consensus       319 G~L~~~m~e~vDGdyQ~~~a~~Gay~RehFFgk~Pel~~lV~~lSDedI~~L~RGGHDp~KvYAAY~~A~~~kG~PTVIL  398 (898)
T PRK13012        319 GALARAFAETVDGQFQTFKANDGAYNREHFFGQNPELAALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRHKGQPTVIL  398 (898)
T ss_pred             CHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             77999998612507676304568899999808988999998538999999876369987999999999985679984897


Q ss_pred             HCCCCCCCC-CCCCCCCCCCC-CCCCHHHHHHHHHHCCCCCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             013345557-00047711033-43722332125663487778-------5438978999999754333566887642467
Q gi|254780655|r  254 CETVIGFGS-PNRAGTNKVHG-SALGQEEIKATRKALNWDLD-------PFFIPDDIMKKWRLAGLRSSQTRADWQERLS  324 (673)
Q Consensus       254 ~~T~kG~G~-~~~e~~~~~HG-~~l~~ee~~~~~k~lg~~~~-------~f~ip~~v~~~~~~~~~~~~~~~~~w~~~~~  324 (673)
                      ++|+||+|. +..|+....|+ +.|+.|+++.+|..|++|..       ||+.|++--...++.           +++-+
T Consensus       399 AkTvKGyGlG~~gEg~N~tHQ~KKl~~d~Lk~fRdrf~iPisDe~~e~~pfy~P~~dS~E~~Yl-----------~~rR~  467 (898)
T PRK13012        399 AKTKKGFGMGEAGQGRMTTHQQKKLDVEALKAFRDRFRLPLSDEQLEQLPFYKPAEDSPEMRYL-----------HARRA  467 (898)
T ss_pred             EEEEEECCCCCHHHHCCHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCHHHHHH-----------HHHHH
T ss_conf             5223325666124202124302459999999999975999885665108987989999999999-----------99999


Q ss_pred             HHHHHHHHCCCCHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH---HHHHHCCCC---------CC
Q ss_conf             631111100230011107763023555420000013554310134678889988655---433220345---------55
Q gi|254780655|r  325 SMKSSIRKEFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSELVLEVVNDCL---PELIGGSAD---------LT  392 (673)
Q Consensus       325 ~~~~~~~~e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vatr~a~g~~l~~i~~~~---p~iv~~sAD---------l~  392 (673)
                      .....+|........-.+|.  .+.+..+...  ..+..++|..+|..+|..+.+.-   ++||-+-+|         |.
T Consensus       468 ~LGG~~P~R~~~~~~l~~P~--~~~f~~~~~g--sg~r~~STTmafvR~l~~Llkdk~ig~riVPIvpDEaRTFGMe~lF  543 (898)
T PRK13012        468 ALGGYLPRRRTAADALPVPP--LSAFAQFALG--AGGKEMSTTMAFVRMLGGLLKDKALGPRIVPIVADEARTFGMANLF  543 (898)
T ss_pred             HCCCCCCCCCCCCCCCCCCC--HHHHHHHHCC--CCCCCEEHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCHHHH
T ss_conf             83898987888887789988--7899999648--8987402799999999999608265761665436721024737656


Q ss_pred             CCCCCCCCCCCCCC----------CCCCHHHCCCCCCCHHHHHH--HHHHHHH--CC-CCCCEECCCHHH-HHHHHHHHH
Q ss_conf             67400026663445----------43200100325762002356--7879987--28-876220010035-553001245
Q gi|254780655|r  393 GSNGTKTSQMKAIS----------KSDFSGRYLHYGVREHAMAA--AMNGIAL--HK-GLAPYSGTFMVF-SDYSRPAIR  456 (673)
Q Consensus       393 ~St~~~~~~~~~~~----------~~~~p~r~i~~GIaE~~~~~--~aaGla~--~~-g~~p~~~tf~~F-~~~~~~~ir  456 (673)
                      ...+++.+..+.+.          ++.-.|+.++.||.|..+.+  +|||-|.  |+ .++||+.-|++| +||.-|.+.
T Consensus       544 rq~gIYs~~GQ~Y~PvD~~~l~~YkE~~~GQiLeEGInEAGa~sswiAA~TsYs~hg~pmIPfYIfYSMFGFQRvGDl~W  623 (898)
T PRK13012        544 RQVGIYSPLGQLYEPEDAGSLLYYREATDGQILEEGISEAGAISSWIAAATSYSVHGLPMLPFYIYYSMFGFQRIGDLIW  623 (898)
T ss_pred             HHCCEECCCCCCCCCEEHHHHHHEEECCCCCCHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHH
T ss_conf             32331278876057442211310012678722221310000589998750031127985405688766403056767998


Q ss_pred             HHHHHHCCCEEECCCCCCC-C-C-----CCCCHHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCC-----CCCCE
Q ss_conf             4111100001302454333-3-3-----333101000222101110122112112012457777652025-----67834
Q gi|254780655|r  457 LASLMGIRVIHVLTHDSIG-L-G-----EDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKE-----KNRPS  524 (673)
Q Consensus       457 ~~al~~~~v~~v~th~gi~-~-G-----~DGpTHq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~-----~~gP~  524 (673)
                      .++-|..+-.+++.-+|=. + |     +||-||      -+...+|||.-+.|+.+.|++.+++..++.     .+--.
T Consensus       624 AAgD~~aRGFLlGaTAGRTTLnGEGLQHqDGHSh------llAstiPnc~sYDPafaYElavIv~~Gl~rMy~~~edvfY  697 (898)
T PRK13012        624 AAADQRARGFLLGATAGRTTLGGEGLQHQDGHSH------LAASTIPNCRAYDPAFAYELAVIVDDGMRRMYEEQEDVFY  697 (898)
T ss_pred             HHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHH------HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             7421113515640256742036664456776126------8876456530047533666699999999999857986799


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCEEEEEC---CCCCEEEEECCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCHHCC
Q ss_conf             99952444433456655322123473799856---997299995268899999999999973-99439985746581000
Q gi|254780655|r  525 VLSLSRQNLPFLRTQYESNNLCALGAYDYIST---PNAQVTIFSSGSELKIAVEACEILSSR-NISTRVVSVPCFELFFE  600 (673)
Q Consensus       525 ~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~---~~~dv~iia~G~~v~~al~aa~~L~~~-Gi~~~Vi~~~s~k~ld~  600 (673)
                      ||.+...+.+.........+.+.+|.|.+...   +++.|.|+++|+.+.++++|+++|+++ ||.+.|+|++|++.|.+
T Consensus       698 YiTv~NENY~qPamPeg~eeGIiKGmY~~~~~~~~~~~~VqLLGSG~Il~evi~AaeiL~~d~gV~adVWSvTSf~ELrR  777 (898)
T PRK13012        698 YLTVMNENYAQPALPEGAEEGILKGMYRLRAAAAAEAPRVQLLGSGAILREVLAAARLLADDWGVDADVWSVTSFTELRR  777 (898)
T ss_pred             EEEECCCCCCCCCCCCCCHHHHHHCCEECCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHH
T ss_conf             98404646658688997477686310442336778995389992569999999999999984298620672488899998


Q ss_pred             ----------------CCHHHHHHHCCCC-CEEEEECCC---CHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHCCCCH
Q ss_conf             ----------------8688999643679-779997286---02789998457981898357767688889999809998
Q gi|254780655|r  601 ----------------QSDSYRAQIIGSS-PIKIAIEAG---LRQGWDAFIGSDGSFIGMQGFGASGSCDLLYQHFGINA  660 (673)
Q Consensus       601 ----------------~~~~~~~~il~~~-~~~vtiE~g---~~~g~~~~~~~~~~~igid~Fg~sg~~~el~~~~Gld~  660 (673)
                                      +...|+.++|... .++|++.+.   +...+..|+.....++|.|.||.|.+++.|.++|.+|+
T Consensus       778 da~~~eR~N~LhP~~~~r~syv~~~L~~~~gPvVAaSDYmra~pdqIr~~vp~~y~vLGTDGFGRSDTR~~LR~fFEVDa  857 (898)
T PRK13012        778 DGLAAERANLLGPAEEPRVPYVTQCLAGTRGPVIAATDYVRAVPEQIRAFVPRRYVTLGTDGFGRSDTRAALRRFFEVDR  857 (898)
T ss_pred             HHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCEEEECHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHCCCCH
T ss_conf             79999999840998777777899983799998799677687649999984689865635888875425799998746378


Q ss_pred             HHHHHHHHHHHC
Q ss_conf             999999999848
Q gi|254780655|r  661 IAIVDMVERKLS  672 (673)
Q Consensus       661 ~~I~~~i~~~L~  672 (673)
                      ++|+-+++..|+
T Consensus       858 ~~IVvAaL~aLa  869 (898)
T PRK13012        858 HSIVLAALKALA  869 (898)
T ss_pred             HHHHHHHHHHHH
T ss_conf             899999999999


No 18 
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase; InterPro: IPR005477     DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. DXP synthase is found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis . In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding . This family includes transketolase enzymes 2.2.1.1 from EC. and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0008661 1-deoxy-D-xylulose-5-phosphate synthase activity, 0016114 terpenoid biosynthetic process.
Probab=100.00  E-value=0  Score=530.91  Aligned_cols=558  Identities=22%  Similarity=0.369  Sum_probs=467.1

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECC
Q ss_conf             99887676433468888999999999999999999738897643136899999984332544577898878877998565
Q gi|254780655|r    1 MGHPVGGRNVVLMKYDDDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAG   80 (673)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~G   80 (673)
                      +++|...+....    ++++++|+++|...++.++. ++||+++++|++|+++++|.   .|+  +|    +|+|+||.|
T Consensus         4 ~~~~~~l~~~~~----~~l~~~~~~~~~~~~~~~~~-~~g~~~~~lg~~~l~~~~~~---~~~--~~----~~~~~wd~g   69 (627)
T TIGR00204         4 LNSPSDLKLLSI----DELEKLCDELREYLLESVSA-SGGHLGPGLGVVELTVALHY---LFD--TP----KDPLIWDVG   69 (627)
T ss_pred             CCCCHHHCCCCH----HHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHH---HHC--CC----CCCEEEECC
T ss_conf             556123124664----46789999999988876530-46533344423345655676---542--76----433033134


Q ss_pred             CCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             20189999999707688998898640003887988988889987306888631479999999999998534268876784
Q gi|254780655|r   81 HGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDH  160 (673)
Q Consensus        81 H~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~  160 (673)
                      |++   |+|+.++|+.    +++.++|+.++ +.|+|.+.++.++.+.+||..++++.++|+|.+.... +.      +.
T Consensus        70 ~~~---y~~~~l~g~~----~~~~~~~~~~g-~~~~~~~~~~~~d~~~~g~~~~~~~~g~g~~~~~~~~-~~------~~  134 (627)
T TIGR00204        70 HQA---YPHKLLTGRG----EEFSTLRQKDG-LHGFPKRSESEYDVFGAGHSSTSISAGLGVALARDLK-GA------DG  134 (627)
T ss_pred             CHH---HHHHHHHCCC----HHHHHHHHCCC-CCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHH-CC------CC
T ss_conf             202---2344441241----13344443056-6777776542210001254310123344456665431-13------66


Q ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCCCCCCC----------------------------
Q ss_conf             59998436211434455788765220-2233069996276322322355678----------------------------
Q gi|254780655|r  161 YTYVLVGDGCLMEGISQEAISFAGHL-GLSKLIVLWDNNGISIDGPISLADS----------------------------  211 (673)
Q Consensus       161 ~v~~iiGDG~l~eG~~~EAl~~A~~~-~l~nli~i~d~N~~si~~~~~~~~~----------------------------  211 (673)
                      +++|++|||+++.|+++||+|++|.. + ..+++++++|.++++.++.....                            
T Consensus       135 ~~~~~~gdg~~~~g~~~~~~~~~g~~p~-~~~~~~l~d~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~  213 (627)
T TIGR00204       135 KPVCLIGDGALTGGLALEALNHAGDLPK-TDLLVILNDNEMSISPNVGALSNHLGRLRSGSLYQSLRDGLKKLLKKLPPV  213 (627)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHCCCCC-CCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             1367641530123467776664125677-653888737532224432478888887640210234553467876414510


Q ss_pred             --------------------CCHHHHHHHCCCCCCC-CCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCC-C
Q ss_conf             --------------------2179988641444444-44440678888888751102210222013345557000477-1
Q gi|254780655|r  212 --------------------TDQYARFRASGWNTLS-VNGHDHHAITSTLRKAQLSDKPTMIACETVIGFGSPNRAGT-N  269 (673)
Q Consensus       212 --------------------~~~~~~~~a~Gw~~~~-vdG~d~~~i~~a~~~ak~~~kP~~I~~~T~kG~G~~~~e~~-~  269 (673)
                                          .+....|+..|++++. +|||++.++...++.++....|.++++.|.+|+|+...+.+ .
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~lg~~y~gp~~g~~~~~~~~~~~~~~~~~gp~~~~~~~~~g~gy~~~~~~~~  293 (627)
T TIGR00204       214 GNYLAPLAERVEESLKGLLVPPVGTLFEELGFNYLGPVDGHDLSELIETLKNAKKLKGPVLLHVSTKKGKGYKPAEKDPI  293 (627)
T ss_pred             HHHHHHHHHHHHHHHCEECCCCCHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCC
T ss_conf             13556778876653200001430023343054100665653078999988876523785378876215776443345523


Q ss_pred             C-CCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH-HCCCCCH
Q ss_conf             1-0334372233212566348777854389789999997543335668876424676311111002300111-0776302
Q gi|254780655|r  270 K-VHGSALGQEEIKATRKALNWDLDPFFIPDDIMKKWRLAGLRSSQTRADWQERLSSMKSSIRKEFERRFSD-ALPDCFD  347 (673)
Q Consensus       270 ~-~HG~~l~~ee~~~~~k~lg~~~~~f~ip~~v~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~e~~~~~~~-~~p~~~~  347 (673)
                      . ||+.+                  ||....                                        + ..|..  
T Consensus       294 ~~~~~~~------------------~~~~~~----------------------------------------g~~~~~~--  313 (627)
T TIGR00204       294 GTWHGVG------------------PFDLST----------------------------------------GKLLPKS--  313 (627)
T ss_pred             CEECCCC------------------CCCCCC----------------------------------------CCCCCCC--
T ss_conf             2002567------------------656443----------------------------------------3102355--


Q ss_pred             HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHH
Q ss_conf             35554200000135543101346788899886554332203455567400026663445432001003257620023567
Q gi|254780655|r  348 NAFINLKKKFEHSKPMIATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAMAAA  427 (673)
Q Consensus       348 ~~~~~~~~~~~~~~~~vatr~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~p~r~i~~GIaE~~~~~~  427 (673)
                                  .....+..+.++.++..+++.++++++.++.+...++.      ..+.+.||.||+|+||+|||++++
T Consensus       314 ------------~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~------~~~~~~~p~~~~d~~~~~~~~~~~  375 (627)
T TIGR00204       314 ------------KSAPPSYSKLFGDTLCELAKKDGKIVGITPAMPEGSGL------DKLSDKFPDRYFDVGIAEQHAVTL  375 (627)
T ss_pred             ------------CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCH------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             ------------45566413555567887753056525520122223314------688875003454233323455666


Q ss_pred             HHHHHHCCCCCCEECCCHHHHHHHHHH-HHHHHHHHCCCEEECCCCCCCCCCCCCHHHHCCCCCHHHHHCCCCEEEECCH
Q ss_conf             879987288762200100355530012-4541111000013024543333333310100022210111012211211201
Q gi|254780655|r  428 MNGIALHKGLAPYSGTFMVFSDYSRPA-IRLASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHLAALRAIPDLLVLRPADS  506 (673)
Q Consensus       428 aaGla~~~g~~p~~~tf~~F~~~~~~~-ir~~al~~~~v~~v~th~gi~~G~DGpTHq~iedia~lr~iPnl~v~~P~d~  506 (673)
                      ++|++. +|++|++++|++|++|+||+ +|+.|++++|+.++.++.|+ +|+||+|||+++|++++|++||+.++.|.|.
T Consensus       376 ~~~~~~-~g~~p~~~~y~~~l~~~yd~~~~d~~~~~~p~~~~~d~~g~-~g~dg~~~~g~~d~~~~~~~p~~~~~~p~d~  453 (627)
T TIGR00204       376 AAGLAI-EGYKPFVAIYSTFLQRAYDQVVHDVCIQNLPVFFAIDRAGI-VGADGETHQGLFDISYLRCIPNLVLMAPKDE  453 (627)
T ss_pred             HHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCC-CCCCCCCCCCHHHHHHHHHCCCCEEECCCCH
T ss_conf             655542-24303788888887666677888777630550244123342-1477641021355677653130013236634


Q ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCC
Q ss_conf             24577776520256783499952444433456655322123473799856997299995268899999999999973994
Q gi|254780655|r  507 IETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNIS  586 (673)
Q Consensus       507 ~E~~~~~~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~  586 (673)
                      +|+..++.++..+.++|.++|+||++....+......+.+..|++.+++. +.++.++++|+.+..++++++.|.++|++
T Consensus       454 ~~~~~~~~~~~~~~~~p~~~~~p~g~~~g~~~~~~~~~~~~~g~~~~~~~-g~~~~~~~~g~~~~~~~~~~~~l~~~~~~  532 (627)
T TIGR00204       454 NELRQMLYTGYEYDGGPIAVRYPRGNGLGVELTPEPWEGLPIGKSELLRK-GGDLLLLGFGTLVPPALEVAEALNEEGLE  532 (627)
T ss_pred             HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCC-CCCEEEEECCCHHHHHHHHHHHHHHCCCE
T ss_conf             56666665311147752045314655333433213543221240231037-77468873352135788999987533760


Q ss_pred             EEEEECCCCCHHCCCCHHHHHHHCCCCCEEEEEC-----CCCHHHHHHHHCCCC-CE-----EEE-CCCCCCCCHHHHHH
Q ss_conf             3998574658100086889996436797799972-----860278999845798-18-----983-57767688889999
Q gi|254780655|r  587 TRVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIE-----AGLRQGWDAFIGSDG-SF-----IGM-QGFGASGSCDLLYQ  654 (673)
Q Consensus       587 ~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE-----~g~~~g~~~~~~~~~-~~-----igi-d~Fg~sg~~~el~~  654 (673)
                      ++++++++++|+|.   .....+...+..++++|     +|.+.++.+++..++ ..     +|+ |.|..+|+..++..
T Consensus       533 ~~~~~~~~~~p~d~---~~~~~~~~~~~~~~~~~~~~~~gg~g~~~~~~~~~~~~~~~p~~~~g~pd~~~~~~~~~~~~~  609 (627)
T TIGR00204       533 ATLVDLRFVKPLDE---ELILPLAAPHGKLVTLEENALLGGFGSAVLEFLSDQGEKLTPLKRLGLPDEFIPHGTPEELLA  609 (627)
T ss_pred             EEEECHHHHCCCCH---HHHHHHHHCCCCEEEEECCHHCCCHHHHHHHHHHHCCCCCCHHHHHCCCHHHHCCCCHHHHHH
T ss_conf             56520022031346---889988630330355301101032046889988624740002444144124431564677887


Q ss_pred             HCCCCHHHHHHHHHHHHC
Q ss_conf             809998999999999848
Q gi|254780655|r  655 HFGINAIAIVDMVERKLS  672 (673)
Q Consensus       655 ~~Gld~~~I~~~i~~~L~  672 (673)
                      ..|+|.+++.++++..+.
T Consensus       610 ~~gl~~~~~~~~~~~~~~  627 (627)
T TIGR00204       610 DLGLDTAGLADKILALLG  627 (627)
T ss_pred             HHCCCHHHHHHHHHHHCC
T ss_conf             625776788999987419


No 19 
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=100.00  E-value=0  Score=515.29  Aligned_cols=629  Identities=21%  Similarity=0.257  Sum_probs=469.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHC------CCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHH
Q ss_conf             8999999999999999999738------8976431368999999843325445778988788779985652018999999
Q gi|254780655|r   17 DDYKKMADAIRFLSMDAIENVN------SGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYALL   90 (673)
Q Consensus        17 ~~l~~~a~~iR~~~~~~v~~a~------~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~~   90 (673)
                      +..+|+...|||+++.||.+||      |||+++..|++.|+-+-|.+|++=.. ++  ...| +|+-.||.||++||.-
T Consensus        73 ~lE~rir~~iRWNA~aMV~rAnk~~~~lGGHIstyaSaAtLyEVGFNHFfr~~~-~~--~~GD-lv~fQGHssPGiYARA  148 (889)
T TIGR03186        73 QLEERLAAILRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRAAG-DA--SGGD-LVYFQPHSAPGVYARA  148 (889)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCC-CC--CCCC-EEEECCCCCCHHHHHH
T ss_conf             999999999988999999970378898674187688789999741441664799-99--9988-7987588871688999


Q ss_pred             HHCCCCCCCHHHHHHHHCC--CCCCCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf             9707688998898640003--887988--988889987306888631479999999999998534268876784599984
Q gi|254780655|r   91 YLLGYQDVTIEDIKNFRTI--GSKTAG--HPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLV  166 (673)
Q Consensus        91 ~l~G~~~~~~e~l~~~r~~--~s~~~G--hpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~ii  166 (673)
                      +|.||  ++.++|.+||+-  +..++.  || +-+.++++|.|.|+|-|--+|+..|.-.|||..|.-.+.-+.+|||++
T Consensus       149 fLEGR--Lse~qL~nFRqE~~g~GLsSYPHP-~lMPdfWqFPTVSMGLGPi~aIYQArf~kYL~~Rgl~~~~~~kVWafl  225 (889)
T TIGR03186       149 FLEGF--LSDAQLAHYRQEIAGPGLCSYPHP-WLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFF  225 (889)
T ss_pred             HHCCC--CCHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf             87067--899999766653059998999986-668654677752666348889999999999986699876788289993


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC--CCCHHHHHHHCCCCCCCC----------------
Q ss_conf             36211434455788765220223306999627632232235567--821799886414444444----------------
Q gi|254780655|r  167 GDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLAD--STDQYARFRASGWNTLSV----------------  228 (673)
Q Consensus       167 GDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~--~~~~~~~~~a~Gw~~~~v----------------  228 (673)
                      |||||.|..+.-|+++|+..||||||+++|||-+.+||||..--  ...+...|++.|||||+|                
T Consensus       226 GDGEmDEPEs~gai~lA~rE~LDNLifVvNCNLQRLDGPVrGNgkIiqELE~~FrGAGWnVIKviWG~~WD~Ll~~D~~G  305 (889)
T TIGR03186       226 GDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFARDATG  305 (889)
T ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHCCCC
T ss_conf             58766871333332156660577769999567654688846852888998877355885269986678578998528856


Q ss_pred             -----------------------------------------------------CCCCHHHHHHHHHHHHH-CCCCHHHHH
Q ss_conf             -----------------------------------------------------44406788888887511-022102220
Q gi|254780655|r  229 -----------------------------------------------------NGHDHHAITSTLRKAQL-SDKPTMIAC  254 (673)
Q Consensus       229 -----------------------------------------------------dG~d~~~i~~a~~~ak~-~~kP~~I~~  254 (673)
                                                                           .|||...++.|+++|.+ .++||+|.+
T Consensus       306 ~L~~rm~e~vDG~yQ~~~a~~Gay~Re~fFg~~pel~~lv~~~sD~~i~~L~RGGHDp~KvyAAy~~A~~hkG~PTVILa  385 (889)
T TIGR03186       306 ALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVRHEGRPTVILA  385 (889)
T ss_pred             HHHHHHHHCCCHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             79999885447287876346789999998089989999985089999986015799829999999999857899859984


Q ss_pred             CCCCCCCC-CCCCCCCCCCC-CCCCHHHHHHHHHHCCCCCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13345557-00047711033-43722332125663487778-------54389789999997543335668876424676
Q gi|254780655|r  255 ETVIGFGS-PNRAGTNKVHG-SALGQEEIKATRKALNWDLD-------PFFIPDDIMKKWRLAGLRSSQTRADWQERLSS  325 (673)
Q Consensus       255 ~T~kG~G~-~~~e~~~~~HG-~~l~~ee~~~~~k~lg~~~~-------~f~ip~~v~~~~~~~~~~~~~~~~~w~~~~~~  325 (673)
                      +|+||+|. +..|+....|+ +.|+.|+++.+|+.|++|..       ||+.|++--...++..           ++-+.
T Consensus       386 kTvKGyGlG~~~eg~N~tHQ~KKl~~~~L~~fRdrf~iPisD~~le~~pfy~P~~dS~E~~Yl~-----------~rR~~  454 (889)
T TIGR03186       386 KTMKGFGMGAIGQGRMTTHQQKKLDVEALLAFRDRFRLPLSDADVEQLKFYKPDEDSAEMRYLH-----------ARRAA  454 (889)
T ss_pred             ECEEECCCCHHHHCCCHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCHHHHHHH-----------HHHHH
T ss_conf             2324356461441113443244599999999999849998845650389989999988999999-----------99997


Q ss_pred             HHHHHHHCCCCHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH---HHHHHCCCCC---------CC
Q ss_conf             31111100230011107763023555420000013554310134678889988655---4332203455---------56
Q gi|254780655|r  326 MKSSIRKEFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSELVLEVVNDCL---PELIGGSADL---------TG  393 (673)
Q Consensus       326 ~~~~~~~e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vatr~a~g~~l~~i~~~~---p~iv~~sADl---------~~  393 (673)
                      ....+|....+ ....++..-...+..+..  ...+..++|..+|..+|..+.+.-   ++||-+-+|-         ..
T Consensus       455 LGG~lP~R~~~-~~~~l~~P~l~~f~~~~~--~s~~re~STTMafVRlL~~Llkdk~iG~riVPIvpDEARTFGMe~lFr  531 (889)
T TIGR03186       455 LGGYLPRRRTA-ATHALAVPALPSWGRFAL--DAEGKEMSTTMAIVRMLGALLKDAELGPRIVPIVADEARTFGMANLFR  531 (889)
T ss_pred             CCCCCCCCCCC-CCCCCCCCCHHHHHHHHC--CCCCCEEEHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHH
T ss_conf             49989865767-887889978689999854--788852327999999999996082657746654467410357476664


Q ss_pred             CCCCCCCCCCCCC----------CCCCHHHCCCCCCCHHHHHH--HHHHHHH--CC-CCCCEECCCHHH-HHHHHHHHHH
Q ss_conf             7400026663445----------43200100325762002356--7879987--28-876220010035-5530012454
Q gi|254780655|r  394 SNGTKTSQMKAIS----------KSDFSGRYLHYGVREHAMAA--AMNGIAL--HK-GLAPYSGTFMVF-SDYSRPAIRL  457 (673)
Q Consensus       394 St~~~~~~~~~~~----------~~~~p~r~i~~GIaE~~~~~--~aaGla~--~~-g~~p~~~tf~~F-~~~~~~~ir~  457 (673)
                      ..+++....+.+.          ++.-.||.++.||.|..+.+  +|+|-|.  |+ .++||+.-|++| +||.-|.+.-
T Consensus       532 q~GIYs~~GQ~Y~PvD~~~l~~YkE~~~GQILeEGInEAGa~sswiAAaTsYsth~~pmIPfYIfYSMFGFQRvGDl~WA  611 (889)
T TIGR03186       532 QVGIYSPLGQRYEPEDLGSMLYYREDTDGQILEEGISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFGFQRIGDLIWA  611 (889)
T ss_pred             HCCCCCCCCCCCCCCCHHHHHEEEECCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCCHHHH
T ss_conf             31532789863675433244101336887523304023302899999875110389521489999987513212533776


Q ss_pred             HHHHHCCCEEECCCCCCCC--C-----CCCCHHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCC-----CCCCEE
Q ss_conf             1111000013024543333--3-----333101000222101110122112112012457777652025-----678349
Q gi|254780655|r  458 ASLMGIRVIHVLTHDSIGL--G-----EDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKE-----KNRPSV  525 (673)
Q Consensus       458 ~al~~~~v~~v~th~gi~~--G-----~DGpTHq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~-----~~gP~~  525 (673)
                      ++-|..+-.+++.-+|-.+  |     +||-||      -+...+|||..+.|+.+.|++.+++..+..     .+--.|
T Consensus       612 AgD~raRGFLiGaTAGRTTLnGEGLQHqDGHSh------llAstiPnc~sYDPafaYElAvIi~dGl~RMy~~~edvfYY  685 (889)
T TIGR03186       612 AADQRARGFLIGATSGKTTLGGEGLQHQDGTSH------LAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYY  685 (889)
T ss_pred             HHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHH------HHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             302103653787404544235553211662078------88653787501065220022798999999998668874787


Q ss_pred             EEECCCCCCCCCCCCCC----CCCCCCCCEEEEEC--CCCCEEEEECCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCHH
Q ss_conf             99524444334566553----22123473799856--997299995268899999999999973-994399857465810
Q gi|254780655|r  526 LSLSRQNLPFLRTQYES----NNLCALGAYDYIST--PNAQVTIFSSGSELKIAVEACEILSSR-NISTRVVSVPCFELF  598 (673)
Q Consensus       526 ir~~R~~~p~~~~~~~~----~~~~~~G~~~~~~~--~~~dv~iia~G~~v~~al~aa~~L~~~-Gi~~~Vi~~~s~k~l  598 (673)
                      |.+-..+.+........    .+.+.+|.|.+...  ..+.|.|+++|+.+.++++|+++|+++ ||.+.|+|++|++.|
T Consensus       686 iTv~NEny~~P~mP~~~~~~v~~gI~kG~Y~~~~~~~~~~~vqLlgSG~il~ev~~Aa~iL~~d~gV~adVWSvTS~~EL  765 (889)
T TIGR03186       686 LTVTNENYAQPSLPEDRLDAVRRGILKGMYPLDPAALAAARVQLLGSGAILGEVQAAARLLRDDWGIDAAVWSVTSFTEL  765 (889)
T ss_pred             EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHH
T ss_conf             63035455687899982667860245643203545678963799915799999999999998720996417825888999


Q ss_pred             CCC----------------CHHHHHHHCCCC-CEEEEECCC---CHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHCCC
Q ss_conf             008----------------688999643679-779997286---027899984579818983577676888899998099
Q gi|254780655|r  599 FEQ----------------SDSYRAQIIGSS-PIKIAIEAG---LRQGWDAFIGSDGSFIGMQGFGASGSCDLLYQHFGI  658 (673)
Q Consensus       599 d~~----------------~~~~~~~il~~~-~~~vtiE~g---~~~g~~~~~~~~~~~igid~Fg~sg~~~el~~~~Gl  658 (673)
                      .+.                ...|..+.|... .++|++.+.   +...+..|+.....++|.|.||.|.+++.|.++|.+
T Consensus       766 ~Rd~~~~er~n~LhP~~~~~~~yv~~~L~~~~gPvvAasDymr~~~dqIr~~vp~~y~~LGTDGFGrSDTR~~LR~fFeV  845 (889)
T TIGR03186       766 ARDGRAAERAQRLGDAERPPSPHVAQALGATQGPVIAATDYVRAVPELIRAYVPRRYVTLGTDGFGRSDTRAALRAFFEV  845 (889)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCEEEECHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHCCC
T ss_conf             87699999998609987777787999827999987996766665699999746998757348888754157999987582


Q ss_pred             CHHHHHHHHHHHHC
Q ss_conf             98999999999848
Q gi|254780655|r  659 NAIAIVDMVERKLS  672 (673)
Q Consensus       659 d~~~I~~~i~~~L~  672 (673)
                      |+.+|+-+++..|+
T Consensus       846 D~~~IvvaAL~~La  859 (889)
T TIGR03186       846 DRASIVIAALQALA  859 (889)
T ss_pred             CHHHHHHHHHHHHH
T ss_conf             88999999999999


No 20 
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00  E-value=0  Score=504.29  Aligned_cols=237  Identities=38%  Similarity=0.622  Sum_probs=226.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHC
Q ss_conf             88889999999999999999997388976431368999999843325445778988788779985652018999999970
Q gi|254780655|r   14 KYDDDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYALLYLL   93 (673)
Q Consensus        14 ~~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~~~l~   93 (673)
                      ....+|++.|.+||..++.|+..+++||+|+|||++||+.+||.+.|+++|++|.|.+|||||+|+||++|++|+.|...
T Consensus         5 ~~~~~L~~~A~~iRr~~v~m~~~~~~GH~G~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLSKGHaa~AlYa~Lae~   84 (243)
T COG3959           5 LSVDELERIAREIRRNIVRMLANAGSGHVGGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILSKGHAAPALYATLAEK   84 (243)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHC
T ss_conf             22799999999999999998632678875762109999999999872668788877777769983664138999999981


Q ss_pred             CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf             76889988986400038879889888899873068886314799999999999985342688767845999843621143
Q gi|254780655|r   94 GYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLME  173 (673)
Q Consensus        94 G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~e  173 (673)
                      ||  ++.|+|.+|++.+|++||||++..+||+|.||||||||||+|+|||++.|..+.       +++|||++|||||+|
T Consensus        85 G~--~p~eeL~~~~~~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~-------~~~VyvilGDGEl~E  155 (243)
T COG3959          85 GY--FPEEELETFRRIGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGS-------PYRVYVILGDGELDE  155 (243)
T ss_pred             CC--CCHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHCCC-------CCEEEEEECCCCCCC
T ss_conf             89--888999975168985889976578986562687655661078888888765289-------844999955754366


Q ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC-CCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCC-CCHH
Q ss_conf             44557887652202233069996276322322355678-217998864144444444440678888888751102-2102
Q gi|254780655|r  174 GISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADS-TDQYARFRASGWNTLSVNGHDHHAITSTLRKAQLSD-KPTM  251 (673)
Q Consensus       174 G~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~-~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak~~~-kP~~  251 (673)
                      |++|||++.|+|++|+|||.|+|.|++|+||.+...++ +|+..||+||||+|++|||||+++|..|+++++..+ ||++
T Consensus       156 G~~WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~~~rP~~  235 (243)
T COG3959         156 GQVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGSKGRPTV  235 (243)
T ss_pred             CCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHCCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEE
T ss_conf             52799999998705376799994587424776543268520078888438068997584799999999841135899869


Q ss_pred             HHHCCCCC
Q ss_conf             22013345
Q gi|254780655|r  252 IACETVIG  259 (673)
Q Consensus       252 I~~~T~kG  259 (673)
                      |+++|+||
T Consensus       236 IIa~Tvkg  243 (243)
T COG3959         236 IIAKTVKG  243 (243)
T ss_pred             EEEECCCC
T ss_conf             99735659


No 21 
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00  E-value=0  Score=500.71  Aligned_cols=294  Identities=27%  Similarity=0.411  Sum_probs=267.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECC
Q ss_conf             31013467888998865543322034555674000266634454320010032576200235678799872887622001
Q gi|254780655|r  364 IATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGT  443 (673)
Q Consensus       364 vatr~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~t  443 (673)
                      .+.|+.+|+.|..+++.++++|+++||+.+||++.      .|.++||+|||++||+||+|+++|||||+ +|++||++|
T Consensus         7 ~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~~~------~f~~~fPdR~~NvGIaEQ~mvg~AAGLA~-~Gk~Pfv~t   79 (312)
T COG3958           7 ESLRKVYGETLAELGRKNSDIVVLDADLSSSTKTG------YFAKEFPDRFFNVGIAEQDMVGTAAGLAL-AGKKPFVST   79 (312)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH------HHHHHCCHHHEECCHHHHHHHHHHHHHHH-CCCCCEEEC
T ss_conf             67899999999998733899799964531341105------78886754514424678889999988874-488743641


Q ss_pred             CHHHHH-HHHHHHHH-HHHHHCCCEEECCCCCCCCCCCCCHHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCC
Q ss_conf             003555-30012454-1111000013024543333333310100022210111012211211201245777765202567
Q gi|254780655|r  444 FMVFSD-YSRPAIRL-ASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKN  521 (673)
Q Consensus       444 f~~F~~-~~~~~ir~-~al~~~~v~~v~th~gi~~G~DGpTHq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~  521 (673)
                      |++|+. |+|+|||+ .|++++||+++.||+|++.|+||+|||++||+++||.+|||.|+.|||+.|++.++.++.++ +
T Consensus        80 fa~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq~~EDiaimR~lpn~~V~~P~D~v~~~~i~~~~~~~-~  158 (312)
T COG3958          80 FAAFLSRRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQALEDIAIMRGLPNMTVIAPADAVETRAILDQIADY-K  158 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHC-C
T ss_conf             589987779999999861026973899925874258888641167899998607885587048589999999999860-7


Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCC
Q ss_conf             83499952444433456655322123473799856997299995268899999999999973994399857465810008
Q gi|254780655|r  522 RPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQ  601 (673)
Q Consensus       522 gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~  601 (673)
                      ||+|+|+.|.++|..-..  ..+.|++|++.+++ +|+|++||++|.||++|++||++|+++||+++||||+++||+|++
T Consensus       159 GP~Y~Rl~R~~~p~~~~~--~~~~F~iGka~vLr-dG~D~tiiA~G~mv~~al~AA~~L~~~GIsa~Vi~m~tIKPiD~~  235 (312)
T COG3958         159 GPVYMRLGRGKVPVVVDE--GGYTFEIGKANVLR-DGSDLTIIATGVMVAEALEAAEILKKEGISAAVINMFTIKPIDEQ  235 (312)
T ss_pred             CCEEEEECCCCCCCEECC--CCCEEECCCEEEEE-CCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH
T ss_conf             977998057788850337--87257336346764-177269995171669999999999866988799864766778789


Q ss_pred             CHHHHHHHCCCCCEEEEEC-----CCCHHHHHHHHCCCC----CEEEE-CCCCCCCCHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             6889996436797799972-----860278999845798----18983-5776768888999980999899999999984
Q gi|254780655|r  602 SDSYRAQIIGSSPIKIAIE-----AGLRQGWDAFIGSDG----SFIGM-QGFGASGSCDLLYQHFGINAIAIVDMVERKL  671 (673)
Q Consensus       602 ~~~~~~~il~~~~~~vtiE-----~g~~~g~~~~~~~~~----~~igi-d~Fg~sg~~~el~~~~Gld~~~I~~~i~~~L  671 (673)
                      ..   .+.......+||+|     +|+++.+++++.+++    +.+|+ ++||.||+.++|+++||||+++|++++++++
T Consensus       236 ~i---~~~A~~t~~IvT~EeHsi~GGlGsaVAEvlse~~p~~~~riGvp~~fg~sg~~~~Ll~~ygl~~~~I~~~v~~~~  312 (312)
T COG3958         236 AI---LKAARETGRIVTAEEHSIIGGLGSAVAEVLSENGPTPMRRIGVPDTFGRSGKADELLDYYGLDPESIAARVLELL  312 (312)
T ss_pred             HH---HHHHHHCCCEEEEECCEEECCHHHHHHHHHHHCCCCCEEEECCCCHHCCCCCHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf             99---998742583899863322356269999999861996368832773121223569999981999999999999659


No 22 
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=100.00  E-value=0  Score=426.60  Aligned_cols=270  Identities=27%  Similarity=0.326  Sum_probs=239.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHC------CCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHH
Q ss_conf             8999999999999999999738------8976431368999999843325445778988788779985652018999999
Q gi|254780655|r   17 DDYKKMADAIRFLSMDAIENVN------SGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYALL   90 (673)
Q Consensus        17 ~~l~~~a~~iR~~~~~~v~~a~------~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~~   90 (673)
                      |..+|+...|||+++.||.+||      |||++++.|+++|+.+||.+|++-.   +.+...|| |+++||+||++||..
T Consensus         2 e~E~ri~~~~rwna~~~v~ra~~~~~~vGGH~as~aS~ati~~v~~~h~~r~~---~~~~~~D~-V~~qgHasP~~yA~~   77 (386)
T cd02017           2 EIERRIRSLIRWNAMAMVHRANKKDLGIGGHIATFASAATLYEVGFNHFFRAR---GEGGGGDL-VYFQGHASPGIYARA   77 (386)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC---CCCCCCCE-EEECCCCCHHHHHHH
T ss_conf             58999999999999999984557889878806608989999999878875688---88998887-886687678999999


Q ss_pred             HHCCCCCCCHHHHHHHHCCC--CCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf             97076889988986400038--8798898888998-73068886314799999999999985342688767845999843
Q gi|254780655|r   91 YLLGYQDVTIEDIKNFRTIG--SKTAGHPEYGSCA-GIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVG  167 (673)
Q Consensus        91 ~l~G~~~~~~e~l~~~r~~~--s~~~Ghpe~~~~~-~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiG  167 (673)
                      +|.|+  ++.|+|.+||+..  +.+++||.+...| +++|+|||+|+|..+|+++|+++||+..+...+..++||||++|
T Consensus        78 ~L~Gr--l~~e~L~~fR~e~~~~Gl~syP~p~~~p~~~~f~TgSmGlG~~~ai~~A~~~rYl~~rg~~~~~~~rv~~~~G  155 (386)
T cd02017          78 FLEGR--LTEEQLDNFRQEVGGGGLSSYPHPWLMPDFWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLG  155 (386)
T ss_pred             HHHCC--CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEC
T ss_conf             98379--9989997650335799888999988898502167777773689999999999999864888877773899962


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC--CCCCHHHHHHHCCCCCCCC-----------------
Q ss_conf             621143445578876522022330699962763223223556--7821799886414444444-----------------
Q gi|254780655|r  168 DGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLA--DSTDQYARFRASGWNTLSV-----------------  228 (673)
Q Consensus       168 DG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~--~~~~~~~~~~a~Gw~~~~v-----------------  228 (673)
                      ||||+||.+|||+.+|++++|+|||+|+|+|.+++||+|...  ....+...|+++||+||+|                 
T Consensus       156 DgEldEg~~~eAi~~a~~~~LdNL~~vvd~N~Q~LDgpV~gn~kiiqele~~F~~aGW~VIkv~wG~~wd~lf~~d~~g~  235 (386)
T cd02017         156 DGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSKWDELLAKDGGGA  235 (386)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCCCCCH
T ss_conf             52115098999999999847797799995698656752267632589999999877980898532214999976787546


Q ss_pred             ----------------------------------------------------CCCCHHHHHHHHHHHHH-CCCCHHHHHC
Q ss_conf             ----------------------------------------------------44406788888887511-0221022201
Q gi|254780655|r  229 ----------------------------------------------------NGHDHHAITSTLRKAQL-SDKPTMIACE  255 (673)
Q Consensus       229 ----------------------------------------------------dG~d~~~i~~a~~~ak~-~~kP~~I~~~  255 (673)
                                                                          .|||+.+|++|+++|.. .+|||+|+++
T Consensus       236 L~~~m~e~~dg~yQ~~~~~~Ga~~Re~ffg~~pel~~lv~~lsD~dl~~L~rGGHD~~kl~aAy~~A~~~~grPTVIlA~  315 (386)
T cd02017         236 LRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELKALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVEHKGKPTVILAK  315 (386)
T ss_pred             HHHHHHHCCCHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             99998866788889887247599999980898889999850788789987628999899999999998479998799977


Q ss_pred             CCCCCCCCC-CCCCCCCCC-CCCCHHHHHHHHHHCCCCC
Q ss_conf             334555700-047711033-4372233212566348777
Q gi|254780655|r  256 TVIGFGSPN-RAGTNKVHG-SALGQEEIKATRKALNWDL  292 (673)
Q Consensus       256 T~kG~G~~~-~e~~~~~HG-~~l~~ee~~~~~k~lg~~~  292 (673)
                      |+||+|.+. -|+.+..|+ +.|+.|+++.+|+.+++|.
T Consensus       316 TvKG~Glg~age~~N~aHq~Kkl~~~~l~~fRdr~~iPi  354 (386)
T cd02017         316 TIKGYGLGAAGEGRNHAHQVKKMTEDELKALRDRFGIPV  354 (386)
T ss_pred             EEECCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCC
T ss_conf             441278881336765544431599999999999749999


No 23 
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=100.00  E-value=0  Score=412.63  Aligned_cols=194  Identities=27%  Similarity=0.449  Sum_probs=176.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf             89764313689999998433254457789887887799856520189999999707688998898640003887988988
Q gi|254780655|r   39 SGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPE  118 (673)
Q Consensus        39 ~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe  118 (673)
                      |||||++||++||+++||.   +||+      +|||||||+||+|   |++++++|+    .++|.+||+.++ ++|||+
T Consensus         1 GGH~G~slS~vdi~~~Ly~---~~~~------~rDrfilSkGH~a---y~~~~l~~~----~~~~~~~~~~~~-l~ghp~   63 (195)
T cd02007           1 GGHLGSNLGVVELTLALHY---VFDS------PKDKIIWDVGHQA---YPHKILTGR----RDQFHTLRQYGG-LSGFTK   63 (195)
T ss_pred             CCCCCCCHHHHHHHHHHHH---HCCC------CCCCEEEECCHHH---HHHHHHHCC----HHHHCCCCCCCC-CCCCCC
T ss_conf             9952724799999999987---3189------9982898372489---999999677----534340100699-899887


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             88998730688863147999999999999853426887678459998436211434455788765220223306999627
Q gi|254780655|r  119 YGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNN  198 (673)
Q Consensus       119 ~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N  198 (673)
                      +.++|+++++|||||||+|+|+|||+|.|..+.       +++|||++|||||+||++|||+++|++++ +||++|+|+|
T Consensus        64 ~~~~~~~~~stGsLG~Gls~a~G~Ala~k~~~~-------~~~v~~l~GDGEl~EG~~wEA~~~A~~~~-~nli~iid~N  135 (195)
T cd02007          64 RSESEYDAFGTGHSSTSISAALGMAVARDLKGK-------KRKVIAVIGDGALTGGMAFEALNNAGYLK-SNMIVILNDN  135 (195)
T ss_pred             CCCCCCCEECCCCHHHHHHHHHHHHHHHHHCCC-------CCEEEEEECCCHHHHHHHHHHHHHHHHCC-CCEEEEEECC
T ss_conf             999998845886468899999999999956799-------98499997781140189999999976518-9869999679


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCC
Q ss_conf             6322322355678217998864144444-444440678888888751102210222013345557
Q gi|254780655|r  199 GISIDGPISLADSTDQYARFRASGWNTL-SVNGHDHHAITSTLRKAQLSDKPTMIACETVIGFGS  262 (673)
Q Consensus       199 ~~si~~~~~~~~~~~~~~~~~a~Gw~~~-~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T~kG~G~  262 (673)
                      ++|++++++.     ...+|++|||+++ +|||||+++|.+|+++++..+||++|+|+|+||||+
T Consensus       136 ~~~i~~~~~~-----~~~~f~afGw~~v~~vDGhd~~~i~~al~~a~~~~~P~~Iia~TikGkG~  195 (195)
T cd02007         136 EMSISPNVGT-----PGNLFEELGFRYIGPVDGHNIEALIKVLKEVKDLKGPVLLHVVTKKGKGY  195 (195)
T ss_pred             CEEECCCCCC-----CCCHHHHCCCCEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCC
T ss_conf             8761488666-----42368774886778607899999999999986289998999996415084


No 24 
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=100.00  E-value=2.5e-43  Score=332.73  Aligned_cols=297  Identities=16%  Similarity=0.162  Sum_probs=223.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-HHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEC
Q ss_conf             31013467888998865543322034555674000266634454320-01003257620023567879987288762200
Q gi|254780655|r  364 IATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDF-SGRYLHYGVREHAMAAAMNGIALHKGLAPYSG  442 (673)
Q Consensus       364 vatr~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~-p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~  442 (673)
                      +..|.+....|..+.+++|+++.+.+|+....+.. +....+ .++| |+||||+||+||+|+++|+|||+ .|++||++
T Consensus         4 ~~~~~ai~~al~~~~~~d~~v~~~geDv~~~~G~f-~~t~gl-~~~fgp~R~~d~gIaEq~~vg~A~GlA~-~G~~Piv~   80 (327)
T PRK09212          4 LTVREALRDAMREEMERDPKVFLMGEEVGEYQGAY-KVTQGL-LEQFGPKRVIDTPITEHGFAGLAVGAAF-AGLRPIVE   80 (327)
T ss_pred             CHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCH-HHHHHH-HHHHCCCCEECCCCCHHHHHHHHHHHHH-CCCCCEEE
T ss_conf             22999999999999955989999827766467803-541689-9985875031677448999999998986-79944899


Q ss_pred             CCH-HHHHHHHHHHHH-HHHH------HCCCEEECCCCCCCCCCCCCHH-HHCCCCCHHHHHCCCCEEEECCHHHHHHHH
Q ss_conf             100-355530012454-1111------0000130245433333333101-000222101110122112112012457777
Q gi|254780655|r  443 TFM-VFSDYSRPAIRL-ASLM------GIRVIHVLTHDSIGLGEDGPTH-QPVEHLAALRAIPDLLVLRPADSIETLECW  513 (673)
Q Consensus       443 tf~-~F~~~~~~~ir~-~al~------~~~v~~v~th~gi~~G~DGpTH-q~iedia~lr~iPnl~v~~P~d~~E~~~~~  513 (673)
                      +++ .|+.|++|||+. +|..      ++++-+++...+-..+.+|+|| |.++  ++||++|||+|+.|+|+.|+..++
T Consensus        81 ~~~~~f~~ra~dQI~n~~ak~~~~~gg~~~vpvv~r~~~g~~~~~g~~Hs~~~~--a~~~~iPgl~Vv~Ps~~~d~~~ll  158 (327)
T PRK09212         81 FMTFNFAMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQCYA--SWYAHIPGLKVVAPYFAADCKGLL  158 (327)
T ss_pred             EEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHH--HHHCCCCCCEEEECCCHHHHHHHH
T ss_conf             755667778999999988875241278523018998177246787743331568--896289998899648877889999


Q ss_pred             HHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             65202567834999524444334566553221234737998569972999952688999999999999739943998574
Q gi|254780655|r  514 QVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVP  593 (673)
Q Consensus       514 ~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~  593 (673)
                      ++++++ ++|++++-+|-.........+..+.+.+|++.+++ +|.|++||++|.||++|++||+.|+++||+++|||++
T Consensus       159 ~~a~~~-~~Pvi~~e~~~ly~~~~~v~~~~~~~~iGKa~vlr-eG~DvTIva~G~mv~~al~AAe~L~~~GI~~eVIdl~  236 (327)
T PRK09212        159 KTAIRD-NNPVIFLENEILYGHSHEVPDEEESIPFGKAAILR-EGSDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLR  236 (327)
T ss_pred             HHHHHC-CCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEE-ECCCEEEEEECHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             998765-99849982443468765677653023377689998-5797499986457899999999999759986788521


Q ss_pred             CCCHHCCCCHHHHHHHCCCCCEEEEECCC-CHHHH----HHHHCCC--------CCEEEE-CCCCCCCCHHHHHHHCCCC
Q ss_conf             65810008688999643679779997286-02789----9984579--------818983-5776768888999980999
Q gi|254780655|r  594 CFELFFEQSDSYRAQIIGSSPIKIAIEAG-LRQGW----DAFIGSD--------GSFIGM-QGFGASGSCDLLYQHFGIN  659 (673)
Q Consensus       594 s~k~ld~~~~~~~~~il~~~~~~vtiE~g-~~~g~----~~~~~~~--------~~~igi-d~Fg~sg~~~el~~~~Gld  659 (673)
                      |+||||++  . +.+...++..+||+|++ ...||    .+.+.++        ...++. |.+..++  ..|-+++=.+
T Consensus       237 tlkPlD~e--~-I~~sv~kT~~lv~veE~~~~gG~Gsevaa~l~e~~f~~L~~p~~rv~~~d~p~P~a--~~LE~~~~p~  311 (327)
T PRK09212        237 TLRPLDTE--T-IIESVKKTNRLVVVEEGWPFAGVGAEIAALIMKEAFDYLDAPVERVTGKDVPLPYA--ANLEKLALPS  311 (327)
T ss_pred             CCCCCCHH--H-HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCC--HHHHHHHCCC
T ss_conf             27899999--9-99999861978999679878878999999999975864589867968898089899--7689884989


Q ss_pred             HHHHHHHHHHHHC
Q ss_conf             8999999999848
Q gi|254780655|r  660 AIAIVDMVERKLS  672 (673)
Q Consensus       660 ~~~I~~~i~~~L~  672 (673)
                      ++.|+++|+++|.
T Consensus       312 ~~~I~~av~~~l~  324 (327)
T PRK09212        312 EEDIIEAVKKVCY  324 (327)
T ss_pred             HHHHHHHHHHHHC
T ss_conf             9999999999866


No 25 
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=100.00  E-value=3e-42  Score=324.87  Aligned_cols=295  Identities=14%  Similarity=0.127  Sum_probs=224.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH-HCCCCCCCHHHHHHHHHHHHHCCCCCCEE-CCC
Q ss_conf             1346788899886554332203455567400026663445432001-00325762002356787998728876220-010
Q gi|254780655|r  367 RKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSG-RYLHYGVREHAMAAAMNGIALHKGLAPYS-GTF  444 (673)
Q Consensus       367 r~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~p~-r~i~~GIaE~~~~~~aaGla~~~g~~p~~-~tf  444 (673)
                      +.+...+|....+.+|+++....|+..--+.  .+....+.++||+ |+||+||+||+|+++|+|||+ .|++||+ ..|
T Consensus         7 ~~ai~~al~~~m~~d~~v~~~GeDv~~~gg~--f~~t~gl~~kfg~~Rv~dtpIaE~~~vG~A~GlA~-~G~rPiv~~~~   83 (326)
T CHL00144          7 FEALREAIDEEMARDPRVAVIGEDVGHYGGS--YKVTKDLHPKYGDLRVLDTPIAENSFTGMAIGAAM-TGLRPVVEGMN   83 (326)
T ss_pred             HHHHHHHHHHHHHHCCCEEEECCCCCCCCCC--HHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHH-CCCEEEEEEEH
T ss_conf             9999999999997599889983776756780--67506799873855100677357889999998874-79979999746


Q ss_pred             HHHHHHHHHHHH-HHHH------HHCCCEEECCCCCCCCCCCCCHHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHH
Q ss_conf             035553001245-4111------100001302454333333331010002221011101221121120124577776520
Q gi|254780655|r  445 MVFSDYSRPAIR-LASL------MGIRVIHVLTHDSIGLGEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVAL  517 (673)
Q Consensus       445 ~~F~~~~~~~ir-~~al------~~~~v~~v~th~gi~~G~DGpTHq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al  517 (673)
                      ..|+.|++|||+ .+|.      .++|+.+++.+.|. .|.+|+|||+.+|+++||++|||+|+.|+|+.|++.++++|+
T Consensus        84 ~~F~~~a~dQi~n~aa~~~~~~gg~~~vplvir~~~g-~g~~~g~~Hs~~~~a~~~~iPgl~Vv~Ps~~~da~~ll~~ai  162 (326)
T CHL00144         84 MGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRGPGG-VGRQLGAEHSQRLESYFQAVPGLQIVACSTPYNAKGLLKSAI  162 (326)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCC-CCCCCCCCCCCCHHHHHHCCCCCEEEECCCHHHHHHHHHHHH
T ss_conf             7788999999999988986034786135799984777-678875412445688983389958995698788899999999


Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCH
Q ss_conf             25678349995244443345665532212347379985699729999526889999999999997399439985746581
Q gi|254780655|r  518 KEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFEL  597 (673)
Q Consensus       518 ~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~  597 (673)
                      ++ ++|+++.-.+.-...........+.+..|++.+++ +|+||+||++|.|+++|++||+.|+++||+++|||++|++|
T Consensus       163 ~~-~~Pv~~~e~~~ly~~~~~vp~~~~~~~~Gka~v~r-~G~DvTIVa~G~mv~~al~Aae~L~~~gI~~eVIDlrtl~P  240 (326)
T CHL00144        163 RS-DNPVLFFEHVLLYNLKEEIPDGEYLLPLEKAELVR-DGEDITILTYSRMRHHVIQAVKLLVTKGYDPEVIDLISLKP  240 (326)
T ss_pred             HC-CCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEE-ECCCEEEEECHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             72-89818995345578764477655665467689997-27987999306779999999999997799768986045799


Q ss_pred             HCCCCHHHHHHHCCCCCEEEEECCC-CHHHHH----HHHCC--------CCCEEEE-CCCCCCCCHHHHHHHCCCCHHHH
Q ss_conf             0008688999643679779997286-027899----98457--------9818983-57767688889999809998999
Q gi|254780655|r  598 FFEQSDSYRAQIIGSSPIKIAIEAG-LRQGWD----AFIGS--------DGSFIGM-QGFGASGSCDLLYQHFGINAIAI  663 (673)
Q Consensus       598 ld~~~~~~~~~il~~~~~~vtiE~g-~~~g~~----~~~~~--------~~~~igi-d~Fg~sg~~~el~~~~Gld~~~I  663 (673)
                      ||.+  . +.+.+.++..+|++|++ ...||+    +.+.+        ....++. |.+..+  ...|.+.+--+++.|
T Consensus       241 lD~e--~-I~~sv~kT~rlv~veE~~~~gG~Gsei~a~i~e~~f~~l~~p~~Ri~~~d~p~P~--s~~lE~~~~p~~~~I  315 (326)
T CHL00144        241 LDMT--T-ISTSIKKTHKVLIVEECMKTGGIGAELLALINENLFDELDAPIFRLSSQDVPTPY--NGSLEEATVIQPEQI  315 (326)
T ss_pred             CCHH--H-HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCC--CHHHHHHHCCCHHHH
T ss_conf             9999--9-9999985498999976998897899999999997586559997896889808989--977998759999999


Q ss_pred             HHHHHHHHC
Q ss_conf             999999848
Q gi|254780655|r  664 VDMVERKLS  672 (673)
Q Consensus       664 ~~~i~~~L~  672 (673)
                      +++|+++|+
T Consensus       316 ~~av~~l~~  324 (326)
T CHL00144        316 IEAVEQITN  324 (326)
T ss_pred             HHHHHHHHC
T ss_conf             999999862


No 26 
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=100.00  E-value=2.1e-36  Score=282.52  Aligned_cols=292  Identities=12%  Similarity=0.120  Sum_probs=211.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCCCCC-HHHCCCCCCCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             31013467888998865543322034555-674000266634454320-0100325762002356787998728876220
Q gi|254780655|r  364 IATRKSSELVLEVVNDCLPELIGGSADLT-GSNGTKTSQMKAISKSDF-SGRYLHYGVREHAMAAAMNGIALHKGLAPYS  441 (673)
Q Consensus       364 vatr~a~g~~l~~i~~~~p~iv~~sADl~-~St~~~~~~~~~~~~~~~-p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~  441 (673)
                      +..+.+....|....+.+|+++...-|+. |+.    .+......++| |+|++|++|+|++++++|.|+|+ .|++|++
T Consensus        35 ~t~~~Ai~~al~~~m~~d~~v~~~GeDv~~GG~----f~~T~gL~~~fGp~Rv~DtPIsE~~ivG~AvG~A~-~G~rPVv  109 (355)
T PTZ00182         35 MNLFQAINSALDIALSKDPKTVLFGEDVAFGGV----FRCSLGLLKKYGEQRVFNTPLCEQGIVGFAIGLAA-VGWTAIA  109 (355)
T ss_pred             EEHHHHHHHHHHHHHHHCCCEEEEECCCCCCCH----HHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHH-CCCCEEE
T ss_conf             579999999999999659988998477366766----66402599985885003178558889999999997-6993599


Q ss_pred             CC-CHHHHHHHHHHHH-HHHHHH--------C-CCEEECCCCCCCCCCCCCHH-HHCCCCCHHHHHCCCCEEEECCHHHH
Q ss_conf             01-0035553001245-411110--------0-00130245433333333101-00022210111012211211201245
Q gi|254780655|r  442 GT-FMVFSDYSRPAIR-LASLMG--------I-RVIHVLTHDSIGLGEDGPTH-QPVEHLAALRAIPDLLVLRPADSIET  509 (673)
Q Consensus       442 ~t-f~~F~~~~~~~ir-~~al~~--------~-~v~~v~th~gi~~G~DGpTH-q~iedia~lr~iPnl~v~~P~d~~E~  509 (673)
                      .+ |+.|+.+++|||. .+|.++        . |+++ -+..|- .+..|++| |++|  ++|+++|||+|+.|+++.++
T Consensus       110 ei~f~dFl~~A~DQIvn~aAk~~~~sgg~~~~~plvi-R~p~G~-~~~~g~~HSqs~e--a~f~~iPGLkVv~Ps~p~DA  185 (355)
T PTZ00182        110 EIQFADYIFPAFDQIVNEAAKYRYRSGGQFDCGKLTI-RSTWGA-VGHGGLYHSQSPE--AYFAHCAGLKIVVPSDPYQA  185 (355)
T ss_pred             EEEHHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEE-ECCCCC-CCCCCCCCCCCHH--HHHHCCCCCEEEECCCHHHH
T ss_conf             9756878999999999998777500387030242899-537888-7778861017969--99826899789934999999


Q ss_pred             HHHHHHHHCCCCCCEEEEECCCCCCC-CCCCCCCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHC-CCCE
Q ss_conf             77776520256783499952444433-456655322123473799856997299995268899999999999973-9943
Q gi|254780655|r  510 LECWQVALKEKNRPSVLSLSRQNLPF-LRTQYESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSR-NIST  587 (673)
Q Consensus       510 ~~~~~~al~~~~gP~~ir~~R~~~p~-~~~~~~~~~~~~~G~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~-Gi~~  587 (673)
                      +.++++|+++ ++|++++.+|.-... ........+.+.+|+..+++ +|.|++||++|.||++|++||+.|+++ ||++
T Consensus       186 kgLl~sAi~d-~~PVif~E~k~Ly~~~~~~vp~~~~~iplGka~i~r-~G~DvTIVa~G~mv~~al~AA~~L~~e~GIs~  263 (355)
T PTZ00182        186 KGLLLACIRD-PNPVIFFEPKILYRSAVEEVPPDDYTLELGKAEVVK-EGKDVTMVGYGSQVGVMKKAAELAEKEHGISV  263 (355)
T ss_pred             HHHHHHHHCC-CCCEEEEECHHHCCCCCCCCCCCCCCCCCCEEEEEE-ECCCEEEEEECHHHHHHHHHHHHHHHCCCCCE
T ss_conf             9999876107-985899965454056766788544544466679996-17947999965689999999999975029977


Q ss_pred             EEEECCCCCHHCCCCHHHHHHHCCCCCEEEEECC-CCHHHHHH----H--------HCCCCCEEEECCCCCCCCHHHHHH
Q ss_conf             9985746581000868899964367977999728-60278999----8--------457981898357767688889999
Q gi|254780655|r  588 RVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIEA-GLRQGWDA----F--------IGSDGSFIGMQGFGASGSCDLLYQ  654 (673)
Q Consensus       588 ~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE~-g~~~g~~~----~--------~~~~~~~igid~Fg~sg~~~el~~  654 (673)
                      +|||++|++|||.  +..+.++ .++..++++|+ ....||++    .        +......++-.+.+.  |.. |-+
T Consensus       264 EVIDlRtL~PlD~--e~I~~SV-~KTgrllvVeE~~~~~G~gsEI~a~i~E~~f~~L~ap~~Rv~~~d~P~--P~~-lE~  337 (355)
T PTZ00182        264 EVIDLQTILPWDR--ETVADSV-KKTGRVIVTHEAPKTSGMGAEIAATIQERCFLSLEAPIKRVCGYDTPF--PLV-HEP  337 (355)
T ss_pred             EEEECCCCCCCCH--HHHHHHH-HHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCC--CHH-HHH
T ss_conf             9995474689999--9999999-987989999889988868999999999986875079868978898889--866-786


Q ss_pred             HCCCCHHHHHHHHHHHHC
Q ss_conf             809998999999999848
Q gi|254780655|r  655 HFGINAIAIVDMVERKLS  672 (673)
Q Consensus       655 ~~Gld~~~I~~~i~~~L~  672 (673)
                      .+=-+++.|+++|+++|+
T Consensus       338 ~~~P~~~~I~~av~~ll~  355 (355)
T PTZ00182        338 LYLPDELKLLEAIKQVVN  355 (355)
T ss_pred             HHCCCHHHHHHHHHHHHC
T ss_conf             719998999999999749


No 27 
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=100.00  E-value=4.2e-36  Score=280.41  Aligned_cols=155  Identities=39%  Similarity=0.573  Sum_probs=144.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCHHH
Q ss_conf             34678889988655433220345556740002666344543200100325762002356787998728876220010035
Q gi|254780655|r  368 KSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVF  447 (673)
Q Consensus       368 ~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~tf~~F  447 (673)
                      ++++++|..+++.+++++++++|+..++++.      .++++||+||||+||+||+|+++|+|||+ .|++||+.+|..|
T Consensus         1 ~a~~~~l~~~~~~d~~vv~l~~Dl~~~~~~~------~f~~~~p~r~in~GIaE~~~vg~a~GlA~-~G~~pi~~~~~~F   73 (156)
T cd07033           1 KAFGEALLELAKKDPRIVALSADLGGSTGLD------KFAKKFPDRFIDVGIAEQNMVGIAAGLAL-HGLKPFVSTFSFF   73 (156)
T ss_pred             CHHHHHHHHHHHHCCCEEEEECCCCCCCCHH------HHHHHCCCCEECCCCHHHHHHHHHHHHHH-CCCCCCHHHHHHH
T ss_conf             9799999999977979999968767887758------99987897844477019999999999997-5999811357988


Q ss_pred             HHHHHHHHH-HHHHHHCCCEEECCCCCCCCCCCCCHHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEE
Q ss_conf             553001245-4111100001302454333333331010002221011101221121120124577776520256783499
Q gi|254780655|r  448 SDYSRPAIR-LASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVL  526 (673)
Q Consensus       448 ~~~~~~~ir-~~al~~~~v~~v~th~gi~~G~DGpTHq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~i  526 (673)
                      ++|+++||| ++|++++||+++++|+|++.|+||||||++||+++||++||++|+.|+|+.|++.+++++++.. +|+||
T Consensus        74 ~~r~~eqi~~~~a~~~~~v~~v~~~~g~~~~~~G~tH~~~ed~~~~~~~Pgl~i~~P~~~~e~~~ll~~a~~~~-~P~~i  152 (156)
T cd07033          74 LQRAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALEYD-GPVYI  152 (156)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCC-CCEEE
T ss_conf             75109999999775279965997688547778978805500587872389948996199999999999998289-98899


Q ss_pred             EECC
Q ss_conf             9524
Q gi|254780655|r  527 SLSR  530 (673)
Q Consensus       527 r~~R  530 (673)
                      |++|
T Consensus       153 rl~r  156 (156)
T cd07033         153 RLPR  156 (156)
T ss_pred             EEEC
T ss_conf             9769


No 28 
>PRK05261 putative phosphoketolase; Provisional
Probab=100.00  E-value=1.2e-29  Score=233.62  Aligned_cols=611  Identities=20%  Similarity=0.251  Sum_probs=371.5

Q ss_pred             CHHHHHHHHHHH---HHHHHHHHHH-C----------------CCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCE-
Q ss_conf             889999999999---9999999973-8----------------897643136899999984332544577898878877-
Q gi|254780655|r   16 DDDYKKMADAIR---FLSMDAIENV-N----------------SGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDR-   74 (673)
Q Consensus        16 ~~~l~~~a~~iR---~~~~~~v~~a-~----------------~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr-   74 (673)
                      .++|+++-+.-|   .+++.+|.-. |                =||-|.+=|.-=++..|=+..-++|.        |- 
T Consensus         7 ~~~l~~~d~~wRAanYLsvgqiYL~dNpLL~~pL~~~~iK~rllGHWGT~pGlnfiYaHlNr~I~~~~~--------~~~   78 (786)
T PRK05261          7 KEELELLDAYWRAANYLSVGQIYLKDNPLLREPLKPEHVKPRLLGHWGTTPGLNFIYAHLNRLIRKYDL--------DMI   78 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--------CEE
T ss_conf             999999999999987898888987048100688986657754477477882499999998898740587--------459


Q ss_pred             EEEECCCCHHHHHHHHHHCC-----CCCCC--HHHHHHH-HCCC--CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             99856520189999999707-----68899--8898640-0038--8798898888998730688863147999999999
Q gi|254780655|r   75 FVLSAGHGSMLYYALLYLLG-----YQDVT--IEDIKNF-RTIG--SKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAI  144 (673)
Q Consensus        75 ~v~s~GH~s~~~Y~~~~l~G-----~~~~~--~e~l~~~-r~~~--s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~  144 (673)
                      ||.-.||+.|++-+..+|.|     |.+++  .+.|++| |+|.  +..|+|.. .++||--..-|-||-++|.|.|+++
T Consensus        79 ~i~GPGHGgpa~~an~yLeGtyse~yp~i~~d~~Gl~~l~~qFS~pgGi~SH~~-petPGsIhEGGELGYsLsha~GA~l  157 (786)
T PRK05261         79 YIAGPGHGGPAMVANAYLEGTYSEIYPEISQDEEGMKRLFKQFSFPGGIPSHAA-PETPGSIHEGGELGYSLSHAYGAAF  157 (786)
T ss_pred             EEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf             995488668888777665276602367889788999999984899898756678-8999730346421256776615755


Q ss_pred             HHHHHHHHCCCCCCCCEEEEEECCCCCCCH---HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC--CCCCHHHHHH
Q ss_conf             999853426887678459998436211434---45578876522022330699962763223223556--7821799886
Q gi|254780655|r  145 AERKLREEFGDVLIDHYTYVLVGDGCLMEG---ISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLA--DSTDQYARFR  219 (673)
Q Consensus       145 a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG---~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~--~~~~~~~~~~  219 (673)
                      .        +-   |--|.||+||||...|   .+|-+-.+.--..-.-++=|+.-|++.|+.+|-..  ..+++.+.|+
T Consensus       158 D--------nP---dliva~vvGDGEaETGplAtsW~s~kflnP~~dGaVLPILhLNG~KI~npTilar~~~~eL~~lf~  226 (786)
T PRK05261        158 D--------NP---DLIVACVVGDGEAETGPLAASWHSNKFLNPATDGAVLPILHLNGYKIANPTILARISDEELESLFR  226 (786)
T ss_pred             C--------CC---CEEEEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEECCCCHHHHHHHHH
T ss_conf             8--------99---859999835861015854000045433581347631015741573136871221378799999986


Q ss_pred             HCCCCCCCCCCCCHHHHHH--------HHHH-------HHHC---CCCH--HHHHCCCCCCCCC------CCCCCCCCCC
Q ss_conf             4144444444440678888--------8887-------5110---2210--2220133455570------0047711033
Q gi|254780655|r  220 ASGWNTLSVNGHDHHAITS--------TLRK-------AQLS---DKPT--MIACETVIGFGSP------NRAGTNKVHG  273 (673)
Q Consensus       220 a~Gw~~~~vdG~d~~~i~~--------a~~~-------ak~~---~kP~--~I~~~T~kG~G~~------~~e~~~~~HG  273 (673)
                      ++||+.+.|+|.|..++..        |+++       |+..   .+|.  +|+++|.|||+.|      ..||+..+|+
T Consensus       227 G~Gy~P~~Veg~dp~~~h~~mA~ald~a~~~I~~iq~~Ar~~~~~~rP~wPmIIlRtPKGWtgPk~vdG~~iEGt~RaHQ  306 (786)
T PRK05261        227 GYGYEPIFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDAERPRWPMIVLRTPKGWTGPKEVDGKKIEGTWRAHQ  306 (786)
T ss_pred             HCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCEECCCCCCCCC
T ss_conf             27988569658887999999999999999999999999974798768887779997888888863438855256630015


Q ss_pred             CCCCH-----HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-----HHH-HC
Q ss_conf             43722-----33212566348777854389789999997543335668876424676311111002300-----111-07
Q gi|254780655|r  274 SALGQ-----EEIKATRKALNWDLDPFFIPDDIMKKWRLAGLRSSQTRADWQERLSSMKSSIRKEFERR-----FSD-AL  342 (673)
Q Consensus       274 ~~l~~-----ee~~~~~k~lg~~~~~f~ip~~v~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~e~~~~-----~~~-~~  342 (673)
                      -||..     +.+..+.+.|.     .+.|++..+   ..+.    ...+    +....   |+.-.|.     .++ .+
T Consensus       307 VPl~~~~~d~~hl~~Le~Wl~-----SY~PeELFd---~~G~----l~~e----i~al~---P~g~~Rm~~nP~angg~~  367 (786)
T PRK05261        307 VPLANVRDNPEHLDLLEDWLR-----SYRPEELFD---EDGR----LKPE----LAALA---PKGDRRMGANPHANGGLL  367 (786)
T ss_pred             CCCCCCCCCHHHHHHHHHHHH-----HCCCHHHCC---CCCC----CCHH----HHHHC---CCCCCCCCCCCCCCCCCC
T ss_conf             888988889999999999998-----559288739---8777----4677----89558---997554456864447866


Q ss_pred             CCCCH-HHHHHHCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCC--CC-----CCCCCC----C
Q ss_conf             76302-3555420000013-55431013467888998865543-3220345556740002--66-----634454----3
Q gi|254780655|r  343 PDCFD-NAFINLKKKFEHS-KPMIATRKSSELVLEVVNDCLPE-LIGGSADLTGSNGTKT--SQ-----MKAISK----S  408 (673)
Q Consensus       343 p~~~~-~~~~~~~~~~~~~-~~~vatr~a~g~~l~~i~~~~p~-iv~~sADl~~St~~~~--~~-----~~~~~~----~  408 (673)
                      ..... ..+.++.-..... ..........|+++..+.+.||. +-++++|-..||....  ..     ......    -
T Consensus       368 ~~~L~lPd~~~~av~~~~pg~~~~~~~~~lg~~lrdvi~~Np~~fRvf~PDEt~SNRL~av~e~t~r~w~~~~~~~d~~l  447 (786)
T PRK05261        368 LRDLKLPDFRDYAVDVPKPGGVEAEATRVLGKYLRDVIKLNPDNFRIFGPDETASNRLQAVFEVTDRQWMAEILPPDEHL  447 (786)
T ss_pred             CCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             77889998676365457888655568899999999999968876610388654334417899874774036667853224


Q ss_pred             CCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCHHHH---HHHHHH----HHHH-------HHHHCCCEEECCCCCC
Q ss_conf             2001003257620023567879987288762200100355---530012----4541-------1110000130245433
Q gi|254780655|r  409 DFSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVFS---DYSRPA----IRLA-------SLMGIRVIHVLTHDSI  474 (673)
Q Consensus       409 ~~p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~tf~~F~---~~~~~~----ir~~-------al~~~~v~~v~th~gi  474 (673)
                      ...||.++ =..|+.+-+++-|..+.| -..+.++|-.|.   +-|..|    ++.+       .+.-+|  ++.|--.-
T Consensus       448 a~~GRVie-~LSEH~cqGwleGYlLTG-RhGlf~sYEAF~~ivdSM~~Qh~KwLk~~~e~~WR~pi~SlN--~llTS~~W  523 (786)
T PRK05261        448 SPDGRVME-VLSEHLCEGWLEGYLLTG-RHGFFSSYEAFIHIVDSMFNQHAKWLKVAREIPWRKPIPSLN--YLLTSHVW  523 (786)
T ss_pred             CCCCCHHH-HHHHHHHHHHHHHHHCCC-CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--EEEEECEE
T ss_conf             77874656-556888878876532158-776421189899999999999999999865277889876612--68620113


Q ss_pred             CCCCCCCHHHH--CCCCCHHHHHCC-CCEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             33333310100--022210111012-211211201245777765202567834999524444334566553221234737
Q gi|254780655|r  475 GLGEDGPTHQP--VEHLAALRAIPD-LLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAY  551 (673)
Q Consensus       475 ~~G~DGpTHq~--iedia~lr~iPn-l~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~  551 (673)
                      .-..+|-|||-  +-| .++--.|. .+|+-|.|++-+...++.++.+++.-.+|.-++|+.|+.-...+....+..|..
T Consensus       524 rQdHNGfSHQDPgfid-~vl~k~~~~~RvYlPpDaNtlLav~d~clrsr~~iNviVa~Kqp~pq~ls~eeA~~h~~~G~~  602 (786)
T PRK05261        524 RQDHNGFSHQDPGFID-HVANKKPDVIRVYLPPDANTLLAVADHCLRSRNYINVIVAGKQPRPQWLSMDEARKHCTKGLG  602 (786)
T ss_pred             ECCCCCCCCCCCHHHH-HHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCC
T ss_conf             3367876667965999-987448884799889966469999999997249168999778777742699999999971673


Q ss_pred             EE--EE---CCCCCEEEEECCHHH-HHHHHHHHHHHHC--CCCEEEEECCCCCHHCCC-------CHHHHHHHCCCCCEE
Q ss_conf             99--85---699729999526889-9999999999973--994399857465810008-------688999643679779
Q gi|254780655|r  552 DY--IS---TPNAQVTIFSSGSEL-KIAVEACEILSSR--NISTRVVSVPCFELFFEQ-------SDSYRAQIIGSSPIK  616 (673)
Q Consensus       552 ~~--~~---~~~~dv~iia~G~~v-~~al~aa~~L~~~--Gi~~~Vi~~~s~k~ld~~-------~~~~~~~il~~~~~~  616 (673)
                      ++  ..   .+.+||++.++|... .+++.|+++|+++  .+++||||+--+-.|...       +++...+++...+++
T Consensus       603 iW~wAS~~~~~ePDVVla~~Gd~pt~E~lAA~~lLr~~~P~lkiR~VNVvDL~~L~~~~~hphgLsd~~Fd~lFt~DkpV  682 (786)
T PRK05261        603 IWDWASNDDGEEPDVVLACAGDVPTLETLAAVDLLREHFPDLKIRVVNVVDLMKLQPPSEHPHGLSDREFDALFTTDKPV  682 (786)
T ss_pred             EEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECHHCCCCCCCCCCCCHHHHHHHCCCCCCE
T ss_conf             86433468899999899816746679999999999986888479999987503117988797779989999756899887


Q ss_pred             EEECCCCHHHHHHHHCCC--CCEEEECCCCCCCC---HHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             997286027899984579--81898357767688---8899998099989999999998
Q gi|254780655|r  617 IAIEAGLRQGWDAFIGSD--GSFIGMQGFGASGS---CDLLYQHFGINAIAIVDMVERK  670 (673)
Q Consensus       617 vtiE~g~~~g~~~~~~~~--~~~igid~Fg~sg~---~~el~~~~Gld~~~I~~~i~~~  670 (673)
                      |..-.|....+.+++-..  ...+-|.+|-+.|+   +-++.-.-++|-=+++..+.+.
T Consensus       683 iFafHGYp~lI~~L~~~R~n~~~~~V~GY~E~G~tTTPfdM~v~N~~dRfhla~dai~~  741 (786)
T PRK05261        683 IFAFHGYPWLIHRLTYRRTNHRNFHVRGYKEEGTTTTPFDMVVLNELDRFHLAIDAIDR  741 (786)
T ss_pred             EEEECCCHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCHHHHHHHCCCHHHHHHHHHHH
T ss_conf             99806978999998647888884489742048877984244665078789999999986


No 29 
>pfam02779 Transket_pyr Transketolase, pyrimidine binding domain. This family includes transketolase enzymes, pyruvate dehydrogenases, and branched chain alpha-keto acid decarboxylases.
Probab=100.00  E-value=2e-33  Score=260.99  Aligned_cols=169  Identities=41%  Similarity=0.578  Sum_probs=151.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEC
Q ss_conf             43101346788899886554332203455567400026663445432001003257620023567879987288762200
Q gi|254780655|r  363 MIATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAMAAAMNGIALHKGLAPYSG  442 (673)
Q Consensus       363 ~vatr~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~  442 (673)
                      .+++|++++.+|..+++.+|+++++++|+.+|+.....+..   .+..++|+||+||+||+|+++|+|+|++|+..||..
T Consensus         2 ~~~~r~a~~~al~~~~~~d~~vv~~~~D~~~g~~~~~~~~~---~~~~~~R~~~~gIaE~~~vg~a~G~A~~G~~~iv~~   78 (174)
T pfam02779         2 KIATRKASGEALAELAERDPRVVGGGADVGGGTFTVTKGLL---HPQGEGRVIDTGIAEQAMVGIANGMALHGLLPPVEA   78 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHCCC---CCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCH
T ss_conf             76499999999999997798999994877887551332465---877898567658177999999999997099641112


Q ss_pred             CCHHHHH-HHHHHHH-HHHHHHCCCEEECCCCCCCCCCCCCHHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCC
Q ss_conf             1003555-3001245-4111100001302454333333331010002221011101221121120124577776520256
Q gi|254780655|r  443 TFMVFSD-YSRPAIR-LASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEK  520 (673)
Q Consensus       443 tf~~F~~-~~~~~ir-~~al~~~~v~~v~th~gi~~G~DGpTHq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~  520 (673)
                      +|+.|++ |+++||+ +.++++.|+.++.+|+|++.|.||+|||+++|+++||++||++|+.|+|+.|++.++++|++.+
T Consensus        79 ~f~~F~~~r~~~~i~~~~~~~~~~v~~v~~~~g~~~g~~G~tHhs~~~~a~~~~iPgl~V~~Ps~~~da~~ll~~ai~~~  158 (174)
T pfam02779        79 TFGDFANIRADAAIRHYAALGKLPVPFVVTRDPIGVGEDGPTHQSQEDEAYLRAIPGLKVVRPSDPAEAKGLLRAAIRRD  158 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCC
T ss_conf             17888888659999999985899998786664602567715465642899997589988996199999999999999648


Q ss_pred             -CCCEEEEECCCCCC
Q ss_conf             -78349995244443
Q gi|254780655|r  521 -NRPSVLSLSRQNLP  534 (673)
Q Consensus       521 -~gP~~ir~~R~~~p  534 (673)
                       ++|++||++|+.++
T Consensus       159 ~~~Pv~i~~~r~~~~  173 (174)
T pfam02779       159 DDDPVVFRLPRQLLR  173 (174)
T ss_pred             CCCCEEEEECHHHCC
T ss_conf             998389983077678


No 30 
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=100.00  E-value=1.3e-29  Score=233.38  Aligned_cols=587  Identities=20%  Similarity=0.226  Sum_probs=355.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEE-ECCCCHHHHHHHHHHCCC-----CCCCHH--H----HHHH
Q ss_conf             897643136899999984332544577898878877998-565201899999997076-----889988--9----8640
Q gi|254780655|r   39 SGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVL-SAGHGSMLYYALLYLLGY-----QDVTIE--D----IKNF  106 (673)
Q Consensus        39 ~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~-s~GH~s~~~Y~~~~l~G~-----~~~~~e--~----l~~~  106 (673)
                      =||.|.+.|..-++.-+-+-.-++|        .+.+.. -.||+.|++-+..+|.|.     .+++.+  -    +++|
T Consensus        60 lGHwGt~pg~s~~Y~H~nr~i~~~d--------~~~~yv~GpGHg~~~~~~~~yLeGtys~~yp~~s~d~~Gm~rL~~qF  131 (793)
T COG3957          60 LGHWGTQPGLSFIYAHLNRLISKYD--------ANMAYVMGPGHGGPAIVANTYLEGTYSEMYPDISQDEEGLNRLFKQF  131 (793)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHC--------CCEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf             0322688873255433347887627--------32589963788865155323357754300302034277899999863


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCH---HHHHHHHHH
Q ss_conf             00388798898888998730688863147999999999999853426887678459998436211434---455788765
Q gi|254780655|r  107 RTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEG---ISQEAISFA  183 (673)
Q Consensus       107 r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG---~~~EAl~~A  183 (673)
                      +-.|| +++|-. .++||.-...|.||++++-|.|.|+-.        -   |--+.|++||||--+|   ++|-+--+.
T Consensus       132 s~PgG-i~SH~~-petPGsIhEGGeLGy~l~ha~gAa~d~--------P---dli~~~vvGDGeaetgplatsWhs~kf~  198 (793)
T COG3957         132 SFPGG-IGSHVA-PETPGSIHEGGELGYALSHAYGAAFDN--------P---DLIVACVVGDGEAETGPLATSWHSNKFL  198 (793)
T ss_pred             CCCCC-CCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHCCC--------C---CCEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf             48788-644458-889976476752248899987750179--------9---8579999426633357630001222345


Q ss_pred             HHHCCCCEEEEEECCCCCCCCCCCCCCC--CCHHHHHHHCCCCCCCCCCCCHHHHHHH--------------HH-HHHHC
Q ss_conf             2202233069996276322322355678--2179988641444444444406788888--------------88-75110
Q gi|254780655|r  184 GHLGLSKLIVLWDNNGISIDGPISLADS--TDQYARFRASGWNTLSVNGHDHHAITST--------------LR-KAQLS  246 (673)
Q Consensus       184 ~~~~l~nli~i~d~N~~si~~~~~~~~~--~~~~~~~~a~Gw~~~~vdG~d~~~i~~a--------------~~-~ak~~  246 (673)
                      .--.-.+++=|+..|+++|+-++-....  +.+.+.|+++||+.+-|+|+|.....+.              ++ +++..
T Consensus       199 np~~dGavLPIL~lNGykI~npT~lar~s~~el~~~f~G~Gy~p~~veg~d~~d~hq~mAa~ldt~~~~i~~iq~~ar~~  278 (793)
T COG3957         199 NPARDGAVLPILHLNGYKIENPTVLARISDEELKALFEGYGYEPVFVEGADPADMHQLMAAVLDTAFEEIQRIQRRAREN  278 (793)
T ss_pred             CCCCCCCEEEEEEECCEECCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             74336732357874361015864555167699999985179840585589867763457899999999999999987741


Q ss_pred             C---CCH--HHHHCCCCCCCCCC------CCCCCCCCCCCCCHH-----HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             2---210--22201334555700------047711033437223-----3212566348777854389789999997543
Q gi|254780655|r  247 D---KPT--MIACETVIGFGSPN------RAGTNKVHGSALGQE-----EIKATRKALNWDLDPFFIPDDIMKKWRLAGL  310 (673)
Q Consensus       247 ~---kP~--~I~~~T~kG~G~~~------~e~~~~~HG~~l~~e-----e~~~~~k~lg~~~~~f~ip~~v~~~~~~~~~  310 (673)
                      .   +|.  +|+++|-||++.|.      .||..++|..|++..     ......+.+.-     +.|++.   |..   
T Consensus       279 ~~~~~p~wPmiilrtPkGwt~p~~idG~~~eg~~raHqvPl~~~~~~p~h~~~l~~wl~s-----y~p~el---fde---  347 (793)
T COG3957         279 NEAIRPRWPMIILRTPKGWTGPVEIDGKKLEGSWRAHQVPLKGHNLNPAHLLELEEWLKS-----YKPEEL---FDE---  347 (793)
T ss_pred             CCCCCCCCCCEEEECCCCCCCCEEECCEECCCCCHHCCCCCCCCCCCCHHHHHHHHHHHH-----CCHHHH---HCC---
T ss_conf             543476665003545777767535314221565412037778787882016899999984-----496765---155---


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCHHH------HHCCCCCHHHHHHHCCCCCC-----CCCCCCHHHHHHHHHHHHHH
Q ss_conf             33566887642467631111100230011------10776302355542000001-----35543101346788899886
Q gi|254780655|r  311 RSSQTRADWQERLSSMKSSIRKEFERRFS------DALPDCFDNAFINLKKKFEH-----SKPMIATRKSSELVLEVVND  379 (673)
Q Consensus       311 ~~~~~~~~w~~~~~~~~~~~~~e~~~~~~------~~~p~~~~~~~~~~~~~~~~-----~~~~vatr~a~g~~l~~i~~  379 (673)
                      .+......|        .-.++..+|...      +.++..  ..+.++.....+     ..+.. ...+.|+++..+.+
T Consensus       348 ~gaL~~e~~--------~~ap~~~~Rm~~~p~angg~l~~e--L~lPD~r~~~v~~~~~g~~~~~-~t~~lg~~l~dv~k  416 (793)
T COG3957         348 HGALKPELR--------ELAPKGEERMGANPHANGGLLPRE--LPLPDLRDYAVEVSEPGAVTAE-STTALGRFLRDVMK  416 (793)
T ss_pred             CCCCCHHHH--------HHCCCCCCCCCCCCCCCCCCCCCC--CCCCCHHHCCCCCCCCCCCCHH-HHHHHHHHHHHHHH
T ss_conf             578787899--------746554445578976667523355--7899745447544788765204-47889999999986


Q ss_pred             HHHH-HHHCCCCCCCCCCCCC--CCCCC-----CCC----CCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCHHH
Q ss_conf             5543-3220345556740002--66634-----454----3200100325762002356787998728876220010035
Q gi|254780655|r  380 CLPE-LIGGSADLTGSNGTKT--SQMKA-----ISK----SDFSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVF  447 (673)
Q Consensus       380 ~~p~-iv~~sADl~~St~~~~--~~~~~-----~~~----~~~p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~tf~~F  447 (673)
                      .++. +.+.++|-..||+...  .....     ...    ....||.++ -..|+...+.+.|.++.|+ ..+.++|-.|
T Consensus       417 ~N~~~fRvf~PDE~aSNrl~~v~~~tkr~~~~~~~~ed~~lsp~GRV~e-~LSEh~c~Gwlegy~LtGr-~glf~sYEaF  494 (793)
T COG3957         417 LNPDNFRVFGPDETASNRLGGVLKVTKRVWMAVTLPEDDFLSPDGRVME-VLSEHACQGWLEGYLLTGR-HGLFASYEAF  494 (793)
T ss_pred             CCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEH-HHCHHHHHHHHHHHHHCCC-CCCEEEHHHH
T ss_conf             0864257647871022101789987653012445684300288863412-2048888789999985177-6614108999


Q ss_pred             H---HHHHHHH----HHHHHHH----C-CCEEECCCCCCCCCCCCCHHHH--CCCCCHHHHHC-CCCEEEECCHHHHHHH
Q ss_conf             5---5300124----5411110----0-0013024543333333310100--02221011101-2211211201245777
Q gi|254780655|r  448 S---DYSRPAI----RLASLMG----I-RVIHVLTHDSIGLGEDGPTHQP--VEHLAALRAIP-DLLVLRPADSIETLEC  512 (673)
Q Consensus       448 ~---~~~~~~i----r~~al~~----~-~v~~v~th~gi~~G~DGpTHq~--iedia~lr~iP-nl~v~~P~d~~E~~~~  512 (673)
                      +   +-|+.|.    +.....+    . -..+++|-.-..-+.+|-|||-  +.| .++...| ++.|+-|+|++-+..+
T Consensus       495 ~~iv~sm~nQh~kwl~v~~e~~wr~~~~Sln~l~TS~vw~QdhNGfsHQdPgf~~-~~~~k~~d~vRvyfPpDaNtlLav  573 (793)
T COG3957         495 AHIVDSMFNQHAKWLKVTREVEWRRPIPSLNYLLTSHVWRQDHNGFSHQDPGFID-HVANKKSDIVRVYFPPDANTLLAV  573 (793)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHCCCCCCCCCCCHHHH-HHHHHCCCCEEEECCCCCCCHHHH
T ss_conf             9999998753099999998505678887410200015565466787657953999-997616575268658987610445


Q ss_pred             HHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEC--C--CCCEEEEECCHHH-HHHHHHHHHHHHCC--C
Q ss_conf             76520256783499952444433456655322123473799856--9--9729999526889-99999999999739--9
Q gi|254780655|r  513 WQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYIST--P--NAQVTIFSSGSEL-KIAVEACEILSSRN--I  585 (673)
Q Consensus       513 ~~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~--~--~~dv~iia~G~~v-~~al~aa~~L~~~G--i  585 (673)
                      +.+|+.+.+.-.+|.-++++.|...+-......+..|...+.-.  .  .+||.+.+.|.+. -++++|+++|++++  +
T Consensus       574 ~d~~l~s~n~in~iVa~K~p~pq~~t~~qA~~~~~~G~~iwewas~d~gepdvV~A~~Gd~~t~e~laAa~~L~e~~p~l  653 (793)
T COG3957         574 YDHCLRSRNKINVIVASKQPRPQWLTMEQAEKHCTDGAGIWEWASGDDGEPDVVMACAGDVPTIEVLAAAQILREEGPEL  653 (793)
T ss_pred             HHHHHHCCCCEEEEEECCCCCCEEECHHHHHHHHHCCCEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             66776256733799736997630001999998763481788752479999877999358731599999999999758643


Q ss_pred             CEEEEECCCCCHHCCC-------CHHHHHHHCCCCCEEEEECCCCHHHHHHHHCC-----CCCEEE--------------
Q ss_conf             4399857465810008-------68899964367977999728602789998457-----981898--------------
Q gi|254780655|r  586 STRVVSVPCFELFFEQ-------SDSYRAQIIGSSPIKIAIEAGLRQGWDAFIGS-----DGSFIG--------------  639 (673)
Q Consensus       586 ~~~Vi~~~s~k~ld~~-------~~~~~~~il~~~~~~vtiE~g~~~g~~~~~~~-----~~~~ig--------------  639 (673)
                      .+||||+.-+-.|...       +++..++.+..+++++..-.|...-..+++..     +..+-|              
T Consensus       654 ~vRvVnVvdl~rLq~~~~hphg~~d~efd~lFt~d~pvif~fHGy~~li~~L~y~r~~~~~~~v~Gy~e~G~tttp~dm~  733 (793)
T COG3957         654 RVRVVNVVDLMRLQPPHDHPHGLSDAEFDSLFTTDKPVIFLFHGYPWLIHALTYRRTNHANLHVEGYRERGTTTTPFDMF  733 (793)
T ss_pred             EEEEEEEECCHHCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECCCHHHHHHHHEECCCCCCEEEEEHHHCCCCCCCHHHH
T ss_conf             28999975202036876687778978997427898501466257588766560430388740675042058868841467


Q ss_pred             ----ECCCCCCCCHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             ----35776768888999980999899999999984
Q gi|254780655|r  640 ----MQGFGASGSCDLLYQHFGINAIAIVDMVERKL  671 (673)
Q Consensus       640 ----id~Fg~sg~~~el~~~~Gld~~~I~~~i~~~L  671 (673)
                          +|+|..-.+.-|.+-+.|.++..++++..+.|
T Consensus       734 v~n~~dRf~~~~~a~~~l~~~~~~~~~~~~~~~~~l  769 (793)
T COG3957         734 VLNRLDRFHLVADAGQRLPQNGLTAAYLAQALKDKL  769 (793)
T ss_pred             HHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             760200577899999987545621789999999998


No 31 
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.97  E-value=9.7e-29  Score=227.08  Aligned_cols=293  Identities=16%  Similarity=0.150  Sum_probs=205.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-HHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEC-
Q ss_conf             1013467888998865543322034555674000266634454320-01003257620023567879987288762200-
Q gi|254780655|r  365 ATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDF-SGRYLHYGVREHAMAAAMNGIALHKGLAPYSG-  442 (673)
Q Consensus       365 atr~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~-p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~-  442 (673)
                      .-|.+.-..|..-..++++++.+.-|+..--+.+  +......++| ++|.+|..|+|+++++++.|+|+ .|++|++. 
T Consensus       143 t~reAlr~a~~eEM~rD~~Vfv~GEdVg~~gG~f--kvT~GL~~~FG~~RV~DTPISE~gi~G~aiGaA~-~GlRPIvEi  219 (464)
T PRK11892        143 TVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAY--KVTQGLLQEFGARRVIDTPITEHGFAGVGVGAAM-AGLKPIVEF  219 (464)
T ss_pred             EHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCC--CCCHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHH-CCCCCEEEE
T ss_conf             6999999999999850998899804001148701--0342278775830420789995678899999997-599847998


Q ss_pred             CCHHHHHHHHHHHHH-HH--------HHHCCCEEECCCCCCCCCCCCCHH-HHCCCCCHHHHHCCCCEEEECCHHHHHHH
Q ss_conf             100355530012454-11--------110000130245433333333101-00022210111012211211201245777
Q gi|254780655|r  443 TFMVFSDYSRPAIRL-AS--------LMGIRVIHVLTHDSIGLGEDGPTH-QPVEHLAALRAIPDLLVLRPADSIETLEC  512 (673)
Q Consensus       443 tf~~F~~~~~~~ir~-~a--------l~~~~v~~v~th~gi~~G~DGpTH-q~iedia~lr~iPnl~v~~P~d~~E~~~~  512 (673)
                      .|+-|+..++|||.. +|        -+++|+++-.. .|-+.| -|++| |+++  ++|.++|||+|+.|+++.+.+.+
T Consensus       220 mf~dF~~~A~DQIiN~AAK~rymsgGq~~~PiViR~p-~G~g~~-~gaqHSQs~e--~~fahiPGLkVv~Pstp~DAkGL  295 (464)
T PRK11892        220 MTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGP-NGAAAR-VGAQHSQDYA--AWYSHIPGLKVVAPYSAADAKGL  295 (464)
T ss_pred             ECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC-CCCCCC-CCCCCCCCHH--HHHHCCCCCEEEEECCHHHHHHH
T ss_conf             6031689999999988888640458861477799813-666667-7766655767--78621787079951899999999


Q ss_pred             HHHHHCCCCCCEEEEECCCCCCCC-CCCCCCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             765202567834999524444334-5665532212347379985699729999526889999999999997399439985
Q gi|254780655|r  513 WQVALKEKNRPSVLSLSRQNLPFL-RTQYESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVS  591 (673)
Q Consensus       513 ~~~al~~~~gP~~ir~~R~~~p~~-~~~~~~~~~~~~G~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~  591 (673)
                      |+.|+.+. .|+.+.-+|.-.... +.....++.+.+|+..+.| +|.|++||++|.|++.|++||+.|+++||++.|||
T Consensus       296 LkaAIrd~-nPVIflE~k~LY~~~~eVP~~~d~~iPiGkA~V~r-eG~DvTIVsyG~mv~~aleAAe~La~eGIs~EVID  373 (464)
T PRK11892        296 LKAAIRDP-NPVIFLENEILYGQSFEVPKLDDFVLPIGKARIHR-EGKDVTIVSFSIGMTYALKAAEELAKEGIDAEVID  373 (464)
T ss_pred             HHHHHHCC-CCEEEEEEHHHCCCCCCCCCCCCCCCCCCCEEEEC-CCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             99997389-98899960210378402687544445664058963-79978999757269999999999987399789997


Q ss_pred             CCCCCHHCCCCHHHHHHHCCCCCEEEEECCC-CHHHHHHH------------HCCCCCEEEECCCCCCCCH-HHHHHHCC
Q ss_conf             7465810008688999643679779997286-02789998------------4579818983577676888-89999809
Q gi|254780655|r  592 VPCFELFFEQSDSYRAQIIGSSPIKIAIEAG-LRQGWDAF------------IGSDGSFIGMQGFGASGSC-DLLYQHFG  657 (673)
Q Consensus       592 ~~s~k~ld~~~~~~~~~il~~~~~~vtiE~g-~~~g~~~~------------~~~~~~~igid~Fg~sg~~-~el~~~~G  657 (673)
                      +||+.|||.  +..+.++- ++.++|++|++ ...||++-            +......++-.+.+  -|. ..|-+.+=
T Consensus       374 LRtL~PLD~--etI~~SVk-KTgRlvVVeE~~~~~GvgaEIaA~I~E~aF~~LdAPv~RV~~~D~P--iP~a~~LE~~~l  448 (464)
T PRK11892        374 LRTIRPMDT--ETIVESVK-KTNRLVTVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLRVTGKDVP--MPYAANLEKLAL  448 (464)
T ss_pred             CCCCCCCCH--HHHHHHHH-HHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCC--CCCCHHHHHHHC
T ss_conf             886788998--99999999-8798999968988886799999999998798608984897889879--888977997758


Q ss_pred             CCHHHHHHHHHHHH
Q ss_conf             99899999999984
Q gi|254780655|r  658 INAIAIVDMVERKL  671 (673)
Q Consensus       658 ld~~~I~~~i~~~L  671 (673)
                      -+++.|++++++.+
T Consensus       449 P~~~~Iv~Avk~V~  462 (464)
T PRK11892        449 PSVAEVVEAVKAVC  462 (464)
T ss_pred             CCHHHHHHHHHHHH
T ss_conf             99999999999985


No 32 
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.97  E-value=7.3e-31  Score=242.45  Aligned_cols=165  Identities=35%  Similarity=0.522  Sum_probs=139.7

Q ss_pred             CHHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECC
Q ss_conf             10134678889988655-43322034555674000266634454320010032576200235678799872887622001
Q gi|254780655|r  365 ATRKSSELVLEVVNDCL-PELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGT  443 (673)
Q Consensus       365 atr~a~g~~l~~i~~~~-p~iv~~sADl~~St~~~~~~~~~~~~~~~p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~t  443 (673)
                      ++|.++++.|..+++.+ +++++.++|+..|+++...+.....++.+|+||||+||+||+|+++|+|+|++ |++||+++
T Consensus         1 ~~r~a~~~~l~~l~~~~~~~iv~~~~Dl~~~~~~~~~~~f~~~~~~~~~r~i~~gIaE~~~vg~a~GlA~~-G~~pi~~~   79 (168)
T smart00861        1 ATRKAFGEALAELAERDPERVVVSGADVGGSTGLDRGGVFPDTKGLGPGRVIDTGIAEQAMVGFAAGLALA-GLRPVVAI   79 (168)
T ss_pred             CHHHHHHHHHHHHHHHCCCEEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHC-CCCCCCCH
T ss_conf             91899999999998569971999836748875775366104444569987564483789999987599875-99642102


Q ss_pred             CHHHHHHHHHHHHHHHHHH-CCCEEECCC-CCCCCCCCCCHHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCC
Q ss_conf             0035553001245411110-000130245-43333333310100022210111012211211201245777765202567
Q gi|254780655|r  444 FMVFSDYSRPAIRLASLMG-IRVIHVLTH-DSIGLGEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKN  521 (673)
Q Consensus       444 f~~F~~~~~~~ir~~al~~-~~v~~v~th-~gi~~G~DGpTHq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~  521 (673)
                      |+.|++|+++|||+.+.++ .|+  ++++ .|...|+||||||+++|++++|+|||++|+.|+|+.|++.++++++...+
T Consensus        80 ~~~f~~~a~~qi~~~~~~~~~~~--v~~~~~~~~~g~~G~tH~s~~~~~~~~~ip~~~v~~P~~~~e~~~~l~~a~~~~~  157 (168)
T smart00861       80 FFTFFDRAKDQIRSDGAMGRVPV--VVRHDSGGGVGEDGPTHHSQEDEALLRAIPGLKVVAPSDPAEAKGLLRAAIRRDD  157 (168)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCE--EEEEECEEEECCCCCHHCCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCC
T ss_conf             35788758999986534066773--7886010056688641104443888861799789970999999999999984889


Q ss_pred             CCEEEEECCCC
Q ss_conf             83499952444
Q gi|254780655|r  522 RPSVLSLSRQN  532 (673)
Q Consensus       522 gP~~ir~~R~~  532 (673)
                      +|.|||++|++
T Consensus       158 ~p~~i~l~~~~  168 (168)
T smart00861      158 GPPVIRLERKS  168 (168)
T ss_pred             CCEEEEECCCC
T ss_conf             98899973899


No 33 
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=99.96  E-value=3.6e-27  Score=215.77  Aligned_cols=287  Identities=21%  Similarity=0.267  Sum_probs=197.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH-HCCCCCCCHHHHHHHHHHHHHCCCCCCEECC-C
Q ss_conf             1346788899886554332203455567400026663445432001-0032576200235678799872887622001-0
Q gi|254780655|r  367 RKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSG-RYLHYGVREHAMAAAMNGIALHKGLAPYSGT-F  444 (673)
Q Consensus       367 r~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~p~-r~i~~GIaE~~~~~~aaGla~~~g~~p~~~t-f  444 (673)
                      +.+...+|..-.+++++++++.-|..---+.. ..... -.++|++ |.||+-|+|.+.+++|.|+|+ .|++|++.. |
T Consensus         5 ~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf-~~T~G-L~~kfG~~RV~DTPiaE~gi~G~avGaA~-~GlrPivEiqf   81 (324)
T COG0022           5 IEAINEAMDEEMERDERVVVLGEDVGVYGGVF-RVTKG-LQEKFGEERVIDTPIAESGIAGIAVGAAL-TGLRPIVEIQF   81 (324)
T ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCH-HHCHH-HHHHHCCCCEECCCCCHHHHHHHHHHHHH-CCCCCEEEEEE
T ss_conf             99999999999812998899823523027701-20333-88770854000576521216889999997-08962489863


Q ss_pred             HHHHHHHHHHHH--H-------HHHHHCCCEEECCCCCCCCCCCCCHH-HHCCCCCHHHHHCCCCEEEECCHHHHHHHHH
Q ss_conf             035553001245--4-------11110000130245433333333101-0002221011101221121120124577776
Q gi|254780655|r  445 MVFSDYSRPAIR--L-------ASLMGIRVIHVLTHDSIGLGEDGPTH-QPVEHLAALRAIPDLLVLRPADSIETLECWQ  514 (673)
Q Consensus       445 ~~F~~~~~~~ir--~-------~al~~~~v~~v~th~gi~~G~DGpTH-q~iedia~lr~iPnl~v~~P~d~~E~~~~~~  514 (673)
                      .-|+--++|||-  .       ..-..+|+++- +..|-+++ -|..| |.+|  +++.++|+++|+.||++.+.+++|.
T Consensus        82 ~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR-~p~G~g~~-~~~~HSqs~e--a~f~h~PGlKVV~PStpyDAKGLL~  157 (324)
T COG0022          82 ADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIR-TPNGGGIG-GGAQHSQSLE--ALFAHIPGLKVVMPSTPYDAKGLLK  157 (324)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCEECCEEEE-CCCCCCCC-CHHHCCCCHH--HHHHCCCCCEEEECCCHHHHHHHHH
T ss_conf             013699999999999988410489643677997-47877777-4443368889--9983389836981797577788999


Q ss_pred             HHHCCCCCCEEEEEC-------CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCE
Q ss_conf             520256783499952-------4444334566553221234737998569972999952688999999999999739943
Q gi|254780655|r  515 VALKEKNRPSVLSLS-------RQNLPFLRTQYESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNIST  587 (673)
Q Consensus       515 ~al~~~~gP~~ir~~-------R~~~p~~~~~~~~~~~~~~G~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~  587 (673)
                      .|+++. .|+.+.-+       |+.+|      +..+.+.+|+..+.| +|+||+||++|.||+.+++||+.|+++||++
T Consensus       158 aAIrd~-dPViflE~k~lY~~~~~eVP------~~~Y~iPlGkA~i~r-eG~DvTivtyg~mv~~al~AAe~l~~~Gis~  229 (324)
T COG0022         158 AAIRDP-DPVIFLEHKRLYRSFKGEVP------EEDYTIPLGKAKIVR-EGSDVTIVTYGAMVHTALEAAEELEKEGISA  229 (324)
T ss_pred             HHHCCC-CCEEEEECHHHHCCCCCCCC------CCCCCCCCCCEEEEE-CCCCEEEEEECHHHHHHHHHHHHHHHCCCCE
T ss_conf             982589-98799732887565655789------877422156033674-4885699985168899999999986269876


Q ss_pred             EEEECCCCCHHCCCCHHHHHHHCCCCCEEEEECC----CCHHHHHHHHCCC--------CCEEEECCCCCCCCH-HHHHH
Q ss_conf             9985746581000868899964367977999728----6027899984579--------818983577676888-89999
Q gi|254780655|r  588 RVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIEA----GLRQGWDAFIGSD--------GSFIGMQGFGASGSC-DLLYQ  654 (673)
Q Consensus       588 ~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE~----g~~~g~~~~~~~~--------~~~igid~Fg~sg~~-~el~~  654 (673)
                      .|||+||++|+|.+  .-..++-+.++.+|.-|+    |++..|...+.++        ...++-  +--.-|+ ..|-+
T Consensus       230 EVIDLRTl~PlD~e--tIi~SvkKTgR~viV~Ea~~~~g~gaei~A~i~e~~f~~LdAPi~Rv~g--~d~P~p~~~~lE~  305 (324)
T COG0022         230 EVIDLRTLSPLDKE--TIIASVKKTGRLVIVHEAPKTGGIGAEIAALIAEEAFDYLDAPILRVAG--PDTPVPYSAALEK  305 (324)
T ss_pred             EEEECCCCCCCCHH--HHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCC--CCCCCCCCHHHHH
T ss_conf             99724346766799--9999988619689998256567728999999999999751274644347--9889897466776


Q ss_pred             HCCCCHHHHHHHHHHHHC
Q ss_conf             809998999999999848
Q gi|254780655|r  655 HFGINAIAIVDMVERKLS  672 (673)
Q Consensus       655 ~~Gld~~~I~~~i~~~L~  672 (673)
                      .+=-+++.|.+++++.+.
T Consensus       306 ~~lp~~~~I~~av~~v~~  323 (324)
T COG0022         306 AYLPNPERIVAAVKKVLE  323 (324)
T ss_pred             HHCCCHHHHHHHHHHHHH
T ss_conf             647998999999999962


No 34 
>KOG0524 consensus
Probab=99.91  E-value=8.9e-23  Score=183.93  Aligned_cols=294  Identities=17%  Similarity=0.236  Sum_probs=203.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECC
Q ss_conf             31013467888998865543322034555674000266634454320010032576200235678799872887622001
Q gi|254780655|r  364 IATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGT  443 (673)
Q Consensus       364 vatr~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~t  443 (673)
                      +.-|.+....++.-.+++|+++++.-++.-..+.+- -.....++-=+.|.+|.-|.|....+++.|.|+ .|++|+|. 
T Consensus        35 mtvreALn~amdEEm~rD~~VfvmGEeV~qy~Gayk-vtkGL~~K~G~~RV~DTPItE~gFtG~avGAA~-~GLrPi~e-  111 (359)
T KOG0524          35 MTVREALNQAMDEEMDRDPRVFVMGEEVGQYGGAYK-VTKGLLDKFGDKRVLDTPITEMGFTGIAVGAAM-AGLRPICE-  111 (359)
T ss_pred             EEHHHHHHHHHHHHHCCCCCEEEECHHHHHCCCEEE-HHHHHHHHCCCCEEECCCCHHCCCCHHHHHHHH-HCCCHHHH-
T ss_conf             549999998889875559847982223542177000-204578860884533574212043115576777-07611454-


Q ss_pred             CHHH--HHHHHHHHHHH---------HHHHCCCEEECCCCCCCCCCCCCHH-HHCCCCCHHHHHCCCCEEEECCHHHHHH
Q ss_conf             0035--55300124541---------1110000130245433333333101-0002221011101221121120124577
Q gi|254780655|r  444 FMVF--SDYSRPAIRLA---------SLMGIRVIHVLTHDSIGLGEDGPTH-QPVEHLAALRAIPDLLVLRPADSIETLE  511 (673)
Q Consensus       444 f~~F--~~~~~~~ir~~---------al~~~~v~~v~th~gi~~G~DGpTH-q~iedia~lr~iPnl~v~~P~d~~E~~~  511 (673)
                      |.+|  +-.+.|||-..         ..+.+|++|-+- .|.+.|- |.-| |.+.  +++.++|+++|+.|+.+.+.++
T Consensus       112 fMtfnFsmqAid~IiNsaakt~YmSgG~~~~piVfRGP-nG~~~gv-~AqHSQ~f~--~wy~siPGlkvvapysaedakG  187 (359)
T KOG0524         112 FMTFNFSMQAIDQIINSAAKTHYMSGGQQPVPIVFRGP-NGAAAGV-AAQHSQDFA--SWYGSIPGLKVVAPYSAEDAKG  187 (359)
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHCCCCCCEECCEEEECC-CCCCCCH-HHHHHHHHH--HHHCCCCCCEEECCCCHHHHHH
T ss_conf             40001489999999988877750037834025799689-9754305-566510467--8755599835863577455556


Q ss_pred             HHHHHHCCCCCCEEEEEC----CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCE
Q ss_conf             776520256783499952----4444334566553221234737998569972999952688999999999999739943
Q gi|254780655|r  512 CWQVALKEKNRPSVLSLS----RQNLPFLRTQYESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNIST  587 (673)
Q Consensus       512 ~~~~al~~~~gP~~ir~~----R~~~p~~~~~~~~~~~~~~G~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~  587 (673)
                      +++.|+.+ ++|+++.-.    ....+..+.....+..+.+|+..+.| +|.|++|+++-.+|..|++||+.|.++|+++
T Consensus       188 LlKaAIRd-~NPVV~lEnelLYg~~f~i~~E~ls~~fv~p~gkAkier-~G~~iTivt~Sr~v~~~leAA~~L~~~Gvs~  265 (359)
T KOG0524         188 LLKAAIRD-ENPVVFLENELLYGLSFEIPEEALSKDFVLPLGKAKIER-EGTHITIVTYSRMVGHCLEAAETLVAKGVSA  265 (359)
T ss_pred             HHHHHCCC-CCCEEEEECHHHCCCCCCCCHHHCCCCEEEECCCEEEEE-CCCCEEEEEECHHHHHHHHHHHHHHHCCCCC
T ss_conf             88886058-997699841101288756873445755053545023661-5884699985025899999999998669880


Q ss_pred             EEEECCCCCHHCCCCHHHHHHHCCCCCEEEEECCCCHH-HHH----H--------HHCCCCCEE-EECCCCCCCCHHHHH
Q ss_conf             99857465810008688999643679779997286027-899----9--------845798189-835776768888999
Q gi|254780655|r  588 RVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIEAGLRQ-GWD----A--------FIGSDGSFI-GMQGFGASGSCDLLY  653 (673)
Q Consensus       588 ~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE~g~~~-g~~----~--------~~~~~~~~i-gid~Fg~sg~~~el~  653 (673)
                      .|||++|++|||-+.+  ..++ .++..++|||.+.+. |++    .        |+-.....+ |.|   -.-|+..-+
T Consensus       266 EVInlrSirP~D~~tI--~~Sv-~KT~~lvtVe~~~p~~gigaei~A~i~E~~fdyLdAPv~rvtg~D---vP~PYa~~l  339 (359)
T KOG0524         266 EVINLRSIRPFDIETI--GASV-KKTNRLVTVEEGWPQFGIGAEICAQIMENAFDYLDAPVQRVTGAD---VPTPYAKTL  339 (359)
T ss_pred             EEEEEECCCCCCHHHH--HHHH-HHHCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCC---CCCCCCHHH
T ss_conf             3674102476558999--9887-650538998345666660399999998877755125355322788---898530006


Q ss_pred             HHCCC-CHHHHHHHHHHHHC
Q ss_conf             98099-98999999999848
Q gi|254780655|r  654 QHFGI-NAIAIVDMVERKLS  672 (673)
Q Consensus       654 ~~~Gl-d~~~I~~~i~~~L~  672 (673)
                      |.+-+ +++.|+.++++.+.
T Consensus       340 E~~a~p~~~~iV~Avk~~~~  359 (359)
T KOG0524         340 EDWAVPQPADIVTAVKKLCN  359 (359)
T ss_pred             HHHCCCCHHHHHHHHHHHHC
T ss_conf             76228987999999998519


No 35 
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.89  E-value=4.8e-21  Score=171.39  Aligned_cols=172  Identities=24%  Similarity=0.226  Sum_probs=127.4

Q ss_pred             CEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             77998565201899999997076889988986400038879889888899873068886314799999999999985342
Q gi|254780655|r   73 DRFVLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREE  152 (673)
Q Consensus        73 Dr~v~s~GH~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~  152 (673)
                      |.++  ..|-+   ..+....|   +++.++..  .+.|+..|.- ......+--.++..|.+++.|+|.|+|.|+.+. 
T Consensus        76 D~i~--~~yR~---hg~~la~G---~~~~~~~a--e~~G~~~G~~-~~~~~~~~~~~~iVG~~~p~A~G~A~a~k~~~~-  143 (341)
T TIGR03181        76 DWVF--PSYRD---HAAMLARG---VPLVEILL--YWRGDERGSW-DPEGVNILPPNIPIGTQYLHAAGVAYALKLRGE-  143 (341)
T ss_pred             CEEE--ECCCC---HHHHEECC---CCHHHHHH--HHCCCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC-
T ss_conf             9897--15672---36331279---98999999--8559776788-860147688874013465414778889987299-


Q ss_pred             CCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC-CCHHHHHHHCCCCCCCCCCC
Q ss_conf             68876784599984362114344557887652202233069996276322322355678-21799886414444444444
Q gi|254780655|r  153 FGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADS-TDQYARFRASGWNTLSVNGH  231 (673)
Q Consensus       153 ~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~-~~~~~~~~a~Gw~~~~vdG~  231 (673)
                            +.-++|++|||+.++|.+|||||+|+.|+| ++|+++.||+++++++...... .++..|..+||...+.|||+
T Consensus       144 ------~~V~v~ffGDGA~~eG~fhEalN~Aa~~~L-PviFv~eNN~yaist~~~~~~~~~~i~~ra~~yGi~~~~vDG~  216 (341)
T TIGR03181       144 ------DNVAVTYFGDGGTSEGDFYEALNFAGVFKA-PVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGN  216 (341)
T ss_pred             ------CCEEEEEECCCCCCCCHHHHHHHHHHHHCC-CEEEEEEECCCCCCCCHHHHCCCCHHHHHHHHCCCCEEECCCC
T ss_conf             ------988999946886432469999999998389-9899996177357776334237736987514249886744885


Q ss_pred             CHHHHHHHHHH----HHHCCCCHHHHHCCCCCCCCC
Q ss_conf             06788888887----511022102220133455570
Q gi|254780655|r  232 DHHAITSTLRK----AQLSDKPTMIACETVIGFGSP  263 (673)
Q Consensus       232 d~~~i~~a~~~----ak~~~kP~~I~~~T~kG~G~~  263 (673)
                      |+.+++++.++    +|..++|++|+++|..-.|+.
T Consensus       217 D~~av~~a~~~Av~~~R~g~gP~liE~~TyR~~gHs  252 (341)
T TIGR03181       217 DVLAVYAVTKEAVERARSGGGPTLIEAVTYRLGPHT  252 (341)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC
T ss_conf             679999999999999855899889999850278867


No 36 
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=99.89  E-value=2.1e-23  Score=188.47  Aligned_cols=154  Identities=18%  Similarity=0.236  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-HHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEC-CCHH
Q ss_conf             467888998865543322034555674000266634454320-01003257620023567879987288762200-1003
Q gi|254780655|r  369 SSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDF-SGRYLHYGVREHAMAAAMNGIALHKGLAPYSG-TFMV  446 (673)
Q Consensus       369 a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~-p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~-tf~~  446 (673)
                      +...+|..+.+.+|+++...+|+..+.+..  +...-+.++| |+|+||+||+||+|+++|+|+|+ .|++||+. .|+.
T Consensus         2 Ai~~al~~~~~~d~~v~~~g~dv~~~~g~~--~~t~gl~~~fgp~R~~d~gIaE~~~vg~a~GlAl-~G~~Pvv~~~~~~   78 (167)
T cd07036           2 AINEALDEEMERDPRVVVLGEDVGDYGGVF--KVTKGLLDKFGPDRVIDTPIAEAGIVGLAVGAAM-NGLRPIVEIMFAD   78 (167)
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCCCCCCH--HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH-CCCEEEEEEEEHH
T ss_conf             799999999976989999957837477805--7747999985766323799688999999999998-5993798862255


Q ss_pred             HHHHHHHHHH-HHHH--------HHCCCEEECCCCCCCCCCCCCHH-HHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHH
Q ss_conf             5553001245-4111--------10000130245433333333101-000222101110122112112012457777652
Q gi|254780655|r  447 FSDYSRPAIR-LASL--------MGIRVIHVLTHDSIGLGEDGPTH-QPVEHLAALRAIPDLLVLRPADSIETLECWQVA  516 (673)
Q Consensus       447 F~~~~~~~ir-~~al--------~~~~v~~v~th~gi~~G~DGpTH-q~iedia~lr~iPnl~v~~P~d~~E~~~~~~~a  516 (673)
                      |+.|+++||+ .+|.        .++|+++...+.+  .+..|||| |.++  ++||+||||+|+.|+|+.|++.++++|
T Consensus        79 Fl~~a~dQi~n~~a~~~~~s~g~~~~pvvir~~~g~--~~~~g~~Hs~~~~--a~~~~iPgl~V~~Ps~~~d~~~ll~~a  154 (167)
T cd07036          79 FALPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGG--GIGGGAQHSQSLE--AWFAHIPGLKVVAPSTPYDAKGLLKAA  154 (167)
T ss_pred             HHHHHHHHHHHHHHHHEECCCCCCCCCEEEEECCCC--CCCCCCCCCCCHH--HHHCCCCCCEEEEECCHHHHHHHHHHH
T ss_conf             540059999977567612038940588899960667--7674530036879--998079996899729999999999999


Q ss_pred             HCCCCCCEEEEECC
Q ss_conf             02567834999524
Q gi|254780655|r  517 LKEKNRPSVLSLSR  530 (673)
Q Consensus       517 l~~~~gP~~ir~~R  530 (673)
                      +++ ++|+++.-+|
T Consensus       155 ~~~-~~Pv~~~E~k  167 (167)
T cd07036         155 IRD-DDPVIFLEHK  167 (167)
T ss_pred             HHC-CCCEEEEECC
T ss_conf             839-9978999339


No 37 
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=99.89  E-value=4.1e-20  Score=164.64  Aligned_cols=139  Identities=23%  Similarity=0.227  Sum_probs=114.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf             87306888631479999999999998534268876784599984362114344557887652202233069996276322
Q gi|254780655|r  123 AGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISI  202 (673)
Q Consensus       123 ~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si  202 (673)
                      .++--++++.|++++.|+|.|++.++.+...+..--+.-++|++|||+++||.+|||||+|+.|+| ++|+++.||+++|
T Consensus       123 ~~~~g~~~ivg~~~p~A~G~A~a~~~~~~~~k~~g~~~V~v~ffGDGat~eG~fhEalN~A~~~~L-PviFv~eNN~yai  201 (343)
T CHL00149        123 HNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKDTQELRVTACFFGDGTTNNGQFFECLNMAVLWKL-PIIFVVENNQWAI  201 (343)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCC-CEEEEEEECCCCC
T ss_conf             271245534334530699999999987543024789827999835763320389999999998479-7689998788146


Q ss_pred             CCCCCCCCC-CCHHHHHHHCCCCCCCCCCCCHHHHHHHHHH----HHHCCCCHHHHHCCCCCCCC
Q ss_conf             322355678-2179988641444444444406788888887----51102210222013345557
Q gi|254780655|r  203 DGPISLADS-TDQYARFRASGWNTLSVNGHDHHAITSTLRK----AQLSDKPTMIACETVIGFGS  262 (673)
Q Consensus       203 ~~~~~~~~~-~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~----ak~~~kP~~I~~~T~kG~G~  262 (673)
                      +.+...... .++..|..+||...+.|||+|+.+++++.++    +|+.++|++|+++|..-.|+
T Consensus       202 st~~~~~~~~~~i~~ra~~yGi~~~~vDGnD~~av~~~~~~Ai~~aR~g~gP~lie~~TyR~~gH  266 (343)
T CHL00149        202 GMAHHRSTSEPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARSGQGPTLIEALTYRFRGH  266 (343)
T ss_pred             CCCHHHCCCCCHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCC
T ss_conf             57732305763377888656997201798789999999999999845699988999986079887


No 38 
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=99.87  E-value=2.2e-20  Score=166.68  Aligned_cols=173  Identities=25%  Similarity=0.286  Sum_probs=129.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHCCCCCCCHHHHH-HH-HCCCCCC-----CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             77998565201899999997076889988986-40-0038879-----88988889987306888631479999999999
Q gi|254780655|r   73 DRFVLSAGHGSMLYYALLYLLGYQDVTIEDIK-NF-RTIGSKT-----AGHPEYGSCAGIEATTGPLGQGIANAVGMAIA  145 (673)
Q Consensus        73 Dr~v~s~GH~s~~~Y~~~~l~G~~~~~~e~l~-~~-r~~~s~~-----~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a  145 (673)
                      |. |+ ..|-+   .++....|.   +++++. .+ -+.++..     +.|-- ....++-.+++++|.+++.|+|.|+|
T Consensus        49 D~-~~-~~yR~---~~~~la~G~---~~~~~~~e~~g~~~g~~~Gr~gs~H~~-~~~~~~~~~~~~vg~~~p~a~G~A~a  119 (293)
T cd02000          49 DW-VF-PTYRD---HGHALARGV---DLKEMLAELFGKETGPCKGRGGSMHIG-DKEKNFFGGNGIVGGQVPLAAGAALA  119 (293)
T ss_pred             CE-EE-ECCCH---HHHHHHHCC---CHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCCEECCCCCCCCCCCHHHHHHHH
T ss_conf             98-98-14520---899999099---999999998257778888888868588-71020504654124663347767899


Q ss_pred             HHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC-CCHHHHHHHCCCC
Q ss_conf             998534268876784599984362114344557887652202233069996276322322355678-2179988641444
Q gi|254780655|r  146 ERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADS-TDQYARFRASGWN  224 (673)
Q Consensus       146 ~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~-~~~~~~~~a~Gw~  224 (673)
                      .|+.+.       +.-++|++|||++.||.+|||||+|+.|+| ++|+++.||+++|+++++.+.. .++..|..+||..
T Consensus       120 ~k~~~~-------~~v~v~~~GDGa~~~G~f~EalN~A~~~~L-Pvlfv~enN~yaist~~~~~~~~~~~~~r~~~~gi~  191 (293)
T cd02000         120 LKYRGE-------DRVAVCFFGDGATNEGDFHEALNFAALWKL-PVIFVCENNGYAISTPTSRQTAGTSIADRAAAYGIP  191 (293)
T ss_pred             HHHHCC-------CCEEEEEECCCCCCCCHHHHHHHHHHHCCC-CEEEEEEECCEECCCCHHHHCCCCCHHHHHHHCCCC
T ss_conf             997589-------988999716874551479999998865379-879999748730235688732774487735326987


Q ss_pred             CCCCCCCCHHHHHHHHHH----HHHCCCCHHHHHCCCCCCCC
Q ss_conf             444444406788888887----51102210222013345557
Q gi|254780655|r  225 TLSVNGHDHHAITSTLRK----AQLSDKPTMIACETVIGFGS  262 (673)
Q Consensus       225 ~~~vdG~d~~~i~~a~~~----ak~~~kP~~I~~~T~kG~G~  262 (673)
                      .+.|||+|+.++++++++    +|+.++|++|+++|..-.|+
T Consensus       192 ~~~vDG~D~~~v~~~~~~Ai~~~R~~~gP~lie~~TyR~~gH  233 (293)
T cd02000         192 GIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGH  233 (293)
T ss_pred             EEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCC
T ss_conf             699748789999999999999985389988999985616755


No 39 
>pfam00676 E1_dh Dehydrogenase E1 component. This family uses thiamine pyrophosphate as a cofactor. This family includes pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate dehydrogenase.
Probab=99.87  E-value=9.4e-20  Score=162.03  Aligned_cols=132  Identities=26%  Similarity=0.345  Sum_probs=112.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf             73068886314799999999999985342688767845999843621143445578876522022330699962763223
Q gi|254780655|r  124 GIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISID  203 (673)
Q Consensus       124 ~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~  203 (673)
                      ++--.++++|.+++.|+|.|+|.|+.+.       +.-++|++|||+.++|.+|||||+|+.|+| ++|+++.||+++|+
T Consensus        98 ~~~~~~~~vg~~~~~avG~A~a~k~~~~-------~~v~v~~~GDGa~~~G~f~EalN~A~~~~l-Pvifv~eNN~yais  169 (303)
T pfam00676        98 RFYGGNGIVGAQVPLGAGIALAAKYRGK-------KEVAITLFGDGATNQGQFFEALNFAALWKL-PVIFVCENNQYAIS  169 (303)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHCC-------CCEEEEEECCCCCCCCHHHHHHHHHHHCCC-CEEEEEEECCCCCC
T ss_conf             5147874130482265668999996389-------987999967997523299999998754389-87999952773366


Q ss_pred             CCCCCCCC-CCHHHHHHHCCCCCCCCCCCCHHHHHHHHH----HHHHCCCCHHHHHCCCCCCCCC
Q ss_conf             22355678-217998864144444444440678888888----7511022102220133455570
Q gi|254780655|r  204 GPISLADS-TDQYARFRASGWNTLSVNGHDHHAITSTLR----KAQLSDKPTMIACETVIGFGSP  263 (673)
Q Consensus       204 ~~~~~~~~-~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~----~ak~~~kP~~I~~~T~kG~G~~  263 (673)
                      ++++.... .++..|.++||.....|||+|+.+++++.+    .+|...+|++|+++|..-.|++
T Consensus       170 t~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~aR~g~gP~lie~~tyR~~gHs  234 (303)
T pfam00676       170 TPAERSSASTYYADRARGYGIPGIRVDGMDPLAVYQAVKFAAERARTGNGPTLIELVTYRYGGHS  234 (303)
T ss_pred             CCHHHHCCCCCHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC
T ss_conf             66645147554888865258028964886589999999999999864899889987511378667


No 40 
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.87  E-value=1.6e-19  Score=160.37  Aligned_cols=131  Identities=24%  Similarity=0.312  Sum_probs=113.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf             73068886314799999999999985342688767845999843621143445578876522022330699962763223
Q gi|254780655|r  124 GIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISID  203 (673)
Q Consensus       124 ~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~  203 (673)
                      ++-.+++++|.+++.|+|.|+|.|+.+.       +.-++|++|||+++||.+|||||+|+.|+| ++|+++.||+++|+
T Consensus       104 ~~~~~~~ivg~~~p~A~G~A~a~k~~~~-------~~v~v~~~GDGa~~~G~f~EalN~A~~~~l-Pvifv~eNN~yais  175 (315)
T TIGR03182       104 NFYGGHGIVGAQVPLATGLAFANKYRGN-------DNVTACFFGDGAANQGQFYESFNMAALWKL-PVIFVIENNLYAMG  175 (315)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHCC-------CCEEEEEECCCCCCCCHHHHHHHHHHCCCC-CEEEEEEECCCCCC
T ss_conf             7778873040374387769999986089-------987999957886653439999988741489-88999952874155


Q ss_pred             CCCCCCCCC-CHHHHHHHCCCCCCCCCCCCHHHHHHHHH----HHHHCCCCHHHHHCCCCCCCC
Q ss_conf             223556782-17998864144444444440678888888----751102210222013345557
Q gi|254780655|r  204 GPISLADST-DQYARFRASGWNTLSVNGHDHHAITSTLR----KAQLSDKPTMIACETVIGFGS  262 (673)
Q Consensus       204 ~~~~~~~~~-~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~----~ak~~~kP~~I~~~T~kG~G~  262 (673)
                      ++++..... ++..|.++||...+.|||+|+.+++++.+    .+|..++|++|+++|..-.|+
T Consensus       176 t~~~~~~~~~~i~~ra~~~gi~~~~vDGnD~~av~~~~~~Ai~~~R~g~gP~lie~~tyR~~gH  239 (315)
T TIGR03182       176 TSVERSSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGH  239 (315)
T ss_pred             CCHHHHCCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCC
T ss_conf             7677753663366655436998589835778999999999999975599988999874268888


No 41 
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=99.84  E-value=1.2e-18  Score=154.01  Aligned_cols=133  Identities=28%  Similarity=0.351  Sum_probs=111.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf             73068886314799999999999985342688767845999843621143445578876522022330699962763223
Q gi|254780655|r  124 GIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISID  203 (673)
Q Consensus       124 ~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~  203 (673)
                      ++-...|+.|++++.|+|+|+|.|+.+..      +.-++|++|||+.++|.+|||||+|+.||| ++|+++.||++.||
T Consensus       130 ~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~------~~Va~~~~GDGat~qG~FhEalN~A~v~kl-Pvvf~ieNN~yAiS  202 (358)
T COG1071         130 GFLGGSGIVGTQIPLAAGAALALKYRGTK------DGVAVAFFGDGATNQGDFHEALNFAAVWKL-PVVFVIENNQYAIS  202 (358)
T ss_pred             CCCCCCCEECCCCCHHHHHHHHHHHHCCC------CCEEEEEECCCCCCCCHHHHHHHHHHHHCC-CEEEEEECCCCEEE
T ss_conf             45787840466534799999999974899------818999945786553339999899998569-87999966871670


Q ss_pred             CCCCCCCCCC-HHHHHHHCCCCCCCCCCCCHHHHHHHHHH----HHHCCCCHHHHHCCCCCCCCC
Q ss_conf             2235567821-79988641444444444406788888887----511022102220133455570
Q gi|254780655|r  204 GPISLADSTD-QYARFRASGWNTLSVNGHDHHAITSTLRK----AQLSDKPTMIACETVIGFGSP  263 (673)
Q Consensus       204 ~~~~~~~~~~-~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~----ak~~~kP~~I~~~T~kG~G~~  263 (673)
                      .+...+...+ +..|-.+||...++|||+|+.+++++.++    |+..+.|++|++.|..=.|++
T Consensus       203 vp~~~q~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS  267 (358)
T COG1071         203 VPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHS  267 (358)
T ss_pred             CCHHHCCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCC
T ss_conf             45664033246775501058872787797799999999999999974899889999875358887


No 42 
>KOG1182 consensus
Probab=99.69  E-value=1.9e-16  Score=138.13  Aligned_cols=154  Identities=25%  Similarity=0.342  Sum_probs=122.5

Q ss_pred             CCCCHHHHHHHH----C---CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf             889988986400----0---388798898888998730688863147999999999999853426887678459998436
Q gi|254780655|r   96 QDVTIEDIKNFR----T---IGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGD  168 (673)
Q Consensus        96 ~~~~~e~l~~~r----~---~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGD  168 (673)
                      +++++|++.+-+    .   .|--.|-|=-..+..++-.| -||.+.++.|+|.|+|.|..+..      |..++|++||
T Consensus       153 Rgftle~f~~qCyGn~~d~gkGrQMPvHyGs~elnf~tis-splatqlpqAvGaaYa~k~~~~n------nac~V~yfGd  225 (432)
T KOG1182         153 RGFTLEEFMNQCYGNKSDLGKGRQMPVHYGSKELNFVTIS-SPLATQLPQAVGAAYALKMRKKN------NACAVTYFGD  225 (432)
T ss_pred             CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEC-CHHHHCCCHHHHHHHHHHHCCCC------CEEEEEEECC
T ss_conf             4852999998742785301466536521375523269961-55430262655456665404467------8079999457


Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC-CHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH--
Q ss_conf             21143445578876522022330699962763223223556782-179988641444444444406788888887511--
Q gi|254780655|r  169 GCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADST-DQYARFRASGWNTLSVNGHDHHAITSTLRKAQL--  245 (673)
Q Consensus       169 G~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~-~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak~--  245 (673)
                      |+.+||.++-|+|+|+.++. ++|+|+.||+..||+|+++++.. -+..|-.+||...|+|||||..+++.|.+.|+.  
T Consensus       226 G~aSEGD~HA~~NfAAtle~-Pvif~CRNNG~AISTptseQyr~DGIa~kG~aYGi~sIRVDGnD~lAvYnA~k~ARe~a  304 (432)
T KOG1182         226 GAASEGDAHAAFNFAATLEC-PVIFFCRNNGWAISTPTSEQYRGDGIAVKGPAYGIRSIRVDGNDALAVYNAVKEAREMA  304 (432)
T ss_pred             CCCCCCCHHHHHHHHHHHCC-CEEEEECCCCEEECCCCHHHHCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf             86666532333207877279-88999827975640564787067855873465635799866831679999889999998


Q ss_pred             --CCCCHHHHHCCC
Q ss_conf             --022102220133
Q gi|254780655|r  246 --SDKPTMIACETV  257 (673)
Q Consensus       246 --~~kP~~I~~~T~  257 (673)
                        .++|++|++.|.
T Consensus       305 v~e~rPvliEamtY  318 (432)
T KOG1182         305 VTEQRPVLIEAMTY  318 (432)
T ss_pred             HHCCCCHHHHHHHH
T ss_conf             75168603564566


No 43 
>pfam02780 Transketolase_C Transketolase, C-terminal domain. The C-terminal domain of transketolase has been proposed as a regulatory molecule binding site.
Probab=99.65  E-value=2.1e-15  Score=130.64  Aligned_cols=110  Identities=21%  Similarity=0.202  Sum_probs=89.8

Q ss_pred             CCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCCCCCEEEEECCCC-----
Q ss_conf             737998569972999952688999999999999739943998574658100086889996436797799972860-----
Q gi|254780655|r  549 GAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIEAGL-----  623 (673)
Q Consensus       549 G~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE~g~-----  623 (673)
                      |++.+++ +|.|++||++|.|+++|++|++.|+++||+++|||++|+||||+   +.+.+.+.++..++|+|++.     
T Consensus         1 Gk~~~~~-~G~di~ii~~G~~~~~al~aa~~L~~~gi~~~vid~~~ikPlD~---~~i~~~~~~~~~vvtvEe~~~~gG~   76 (124)
T pfam02780         1 GKAEILR-EGDDVTIVAYGSMVHEALEAAEELAAEGISAEVIDLRTVKPLDE---DTILESVKKTGRLVVVEEAVPRGGF   76 (124)
T ss_pred             CCEEEEE-ECCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCH---HHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf             9459998-28979999847899999999999877598569974236436678---9999987334868998468867868


Q ss_pred             HHHHHHHHCCC--------CCEEEE-CCCCCCCCHHHHHHHCCCCHHHH
Q ss_conf             27899984579--------818983-57767688889999809998999
Q gi|254780655|r  624 RQGWDAFIGSD--------GSFIGM-QGFGASGSCDLLYQHFGINAIAI  663 (673)
Q Consensus       624 ~~g~~~~~~~~--------~~~igi-d~Fg~sg~~~el~~~~Gld~~~I  663 (673)
                      +..+.+++..+        ...+|+ |.|.+| ++.+++++||||+++|
T Consensus        77 Gs~i~~~l~e~~~~~l~~~v~~ig~pd~~ip~-s~~~~~~~~Gl~~~~I  124 (124)
T pfam02780        77 GAEVAAALAEEGFDYLDAPVLRVGGPDTPIPH-SPALELAYLGLTAEKI  124 (124)
T ss_pred             HHHHHHHHHHHCHHHCCCCEEEECCCCCCCCC-CHHHHHHHCCCCHHHC
T ss_conf             99999999985665449996997479898999-9999998849991239


No 44 
>pfam09364 XFP_N XFP N-terminal domain. Bacterial enzyme splits fructose-6-P and/or xylulose-5-P with the aid of inorganic phosphate into either acetyl-P and erythrose-4-P and/or acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22. This family is distantly related to transketolases e.g. pfam02779.
Probab=99.63  E-value=2.9e-15  Score=129.52  Aligned_cols=244  Identities=25%  Similarity=0.382  Sum_probs=163.8

Q ss_pred             CHHHHHHHHHHH---HHHHHHHHHH-C----------------CCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEE
Q ss_conf             889999999999---9999999973-8----------------8976431368999999843325445778988788779
Q gi|254780655|r   16 DDDYKKMADAIR---FLSMDAIENV-N----------------SGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRF   75 (673)
Q Consensus        16 ~~~l~~~a~~iR---~~~~~~v~~a-~----------------~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~   75 (673)
                      +++|+++-+.-|   .+++.+|.-. |                =||-|.+=|..=+++-|-+..-++|.+       =.|
T Consensus         4 ~~~l~~~d~ywRAaNYLsvgqIYL~dNpLL~~pL~~ehiKprllGHWGT~PGlnfiYaHlNr~I~~~dl~-------mi~   76 (379)
T pfam09364         4 DEELKKLDKYWRAANYLAAGQIYLRDNPLLREPLKPEDIKHRLLGHWGTSPGLSFLYAHLNRIINKYDQN-------MLY   76 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-------EEE
T ss_conf             8999999999999878888999870381006999857677544675778704999999988998745887-------699


Q ss_pred             EEECCCCHHHHHHHHHHCC-----CCCCCH--HHHHHH-HCCCC--CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             9856520189999999707-----688998--898640-00388--7988988889987306888631479999999999
Q gi|254780655|r   76 VLSAGHGSMLYYALLYLLG-----YQDVTI--EDIKNF-RTIGS--KTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIA  145 (673)
Q Consensus        76 v~s~GH~s~~~Y~~~~l~G-----~~~~~~--e~l~~~-r~~~s--~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a  145 (673)
                      |.-.||+.|++-+..+|.|     |.+++.  +.|++| |||.-  ..|+|.. .++||--..-|-||-++|.|.|.++.
T Consensus        77 i~GPGHGgpa~~an~yLeGtyse~YP~i~~d~~Gm~~lfkqFSfPgGipSH~~-petPGsIhEGGELGYsLshA~GAv~D  155 (379)
T pfam09364        77 VVGPGHGGPAMVSPSYLEGSYSEFYPEITFDEEGLKKLFKQFSFPGGIPSHMA-PETPGSIHEGGELGYALSHAYGAVFD  155 (379)
T ss_pred             EECCCCCHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHHHCCCCCC
T ss_conf             85698762555544430343222178998688999999984899898767678-99997424575301355643056458


Q ss_pred             HHHHHHHCCCCCCCCEEEEEECCCCCCCH---HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC--CCCCHHHHHHH
Q ss_conf             99853426887678459998436211434---45578876522022330699962763223223556--78217998864
Q gi|254780655|r  146 ERKLREEFGDVLIDHYTYVLVGDGCLMEG---ISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLA--DSTDQYARFRA  220 (673)
Q Consensus       146 ~k~~~~~~~~~~~d~~v~~iiGDG~l~eG---~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~--~~~~~~~~~~a  220 (673)
                              +-   |--|.||+||||...|   .+|-+-.|..--.-.-+.=|+.-|++.|+.+|-..  ..+++...|++
T Consensus       156 --------nP---dLiva~VvGDGEaETGPlAtsWhsnkFlnP~~dGaVLPILhLNGyKI~npTilar~~~~EL~~lf~G  224 (379)
T pfam09364       156 --------NP---DLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISDEELRKLFEG  224 (379)
T ss_pred             --------CC---CEEEEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCEEECCCCHHHHHHHHHH
T ss_conf             --------98---8689997468632357410111444335813366403024205631268745322898999999842


Q ss_pred             CCCCCCCCCCCCHHHHHHHHH---------------HHHHC---CCC--HHHHHCCCCCCCCCC------CCCCCCCCCC
Q ss_conf             144444444440678888888---------------75110---221--022201334555700------0477110334
Q gi|254780655|r  221 SGWNTLSVNGHDHHAITSTLR---------------KAQLS---DKP--TMIACETVIGFGSPN------RAGTNKVHGS  274 (673)
Q Consensus       221 ~Gw~~~~vdG~d~~~i~~a~~---------------~ak~~---~kP--~~I~~~T~kG~G~~~------~e~~~~~HG~  274 (673)
                      +||+.+-|+|+|..++...+.               +||..   .+|  -+|+.+|.|||..|.      .|++.++|+-
T Consensus       225 ~Gy~p~~Veg~d~~~~h~~mA~~ld~~~~~I~~iq~~AR~~~~~~rP~WPmIvlRtPKGWTgPk~vdG~~iEGt~RaHQV  304 (379)
T pfam09364       225 YGYEPYFVEGHDPESMHRLMAETLDWAVEEIHDIQHAARSNREGSRPRWPMIILRTPKGWTGPKYVDGKKTEGSFRAHQV  304 (379)
T ss_pred             CCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCEEECCCCEEEEC
T ss_conf             79841797079858899999999999999999999999728998788898899968987888753488672065022005


Q ss_pred             CCCH
Q ss_conf             3722
Q gi|254780655|r  275 ALGQ  278 (673)
Q Consensus       275 ~l~~  278 (673)
                      |+..
T Consensus       305 Pl~~  308 (379)
T pfam09364       305 PLAL  308 (379)
T ss_pred             CCCC
T ss_conf             6787


No 45 
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.57  E-value=1.4e-14  Score=124.57  Aligned_cols=174  Identities=25%  Similarity=0.414  Sum_probs=128.6

Q ss_pred             CCCCHHHHHHHHHHCC-----CCCCC--HHHHHHH-HCCCC--CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             6520189999999707-----68899--8898640-00388--7988988889987306888631479999999999998
Q gi|254780655|r   79 AGHGSMLYYALLYLLG-----YQDVT--IEDIKNF-RTIGS--KTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERK  148 (673)
Q Consensus        79 ~GH~s~~~Y~~~~l~G-----~~~~~--~e~l~~~-r~~~s--~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~  148 (673)
                      .||+.|++-+..+|.|     |.+++  .+.|++| |||.-  ..|.|.. .++||-....|-||.+||.|.|.++.   
T Consensus         2 PGHGgpa~~a~~yLeGtyse~yp~~~~d~~Gm~~l~~qFS~pgGipSH~~-PetPGsIhEGGELGYsLshA~GA~~D---   77 (227)
T cd02011           2 PGHGGPAVLANLYLEGSYSEFYPEISQDEEGMRKLFKQFSFPGGIPSHAA-PETPGSIHEGGELGYSLSHAYGAVFD---   77 (227)
T ss_pred             CCCCHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHHHCCCCCC---
T ss_conf             98646677666541343421268888778999999985899898767778-99997506676302355543055348---


Q ss_pred             HHHHCCCCCCCCEEEEEECCCCCCCH---HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC--CCCCCHHHHHHHCCC
Q ss_conf             53426887678459998436211434---4557887652202233069996276322322355--678217998864144
Q gi|254780655|r  149 LREEFGDVLIDHYTYVLVGDGCLMEG---ISQEAISFAGHLGLSKLIVLWDNNGISIDGPISL--ADSTDQYARFRASGW  223 (673)
Q Consensus       149 ~~~~~~~~~~d~~v~~iiGDG~l~eG---~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~--~~~~~~~~~~~a~Gw  223 (673)
                           |-   |--+.||+||||...|   .+|.+-.+..-..-.-++=|++-|++.|+.++-.  ...+++...|+++||
T Consensus        78 -----nP---dliva~VvGDGEaETGPlAtsW~s~kflnP~~dGaVLPIlhLNGyKIsnpTilar~~~~eL~~lf~G~Gy  149 (227)
T cd02011          78 -----NP---DLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISHEELEALFRGYGY  149 (227)
T ss_pred             -----CC---CEEEEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCEEECCCCHHHHHHHHHHCCC
T ss_conf             -----99---8699998568632358412222220015833477244577416740268854312798999999841898


Q ss_pred             CCCCCCCCCHHHHHHHH----H-----------HHHH---CCCC--HHHHHCCCCCCCCCC
Q ss_conf             44444444067888888----8-----------7511---0221--022201334555700
Q gi|254780655|r  224 NTLSVNGHDHHAITSTL----R-----------KAQL---SDKP--TMIACETVIGFGSPN  264 (673)
Q Consensus       224 ~~~~vdG~d~~~i~~a~----~-----------~ak~---~~kP--~~I~~~T~kG~G~~~  264 (673)
                      +.+-|+|.|.+++...+    +           +||.   ..+|  -+|+.+|.|||..|.
T Consensus       150 ~p~~Veg~dp~~~h~~mA~~ld~a~~~I~~iq~~Ar~~~~~~rp~WPmivlRtPKGWtgPk  210 (227)
T cd02011         150 EPYFVEGDDPETMHQAMAATLDWAIEEIKAIQKRAREGGDASRPRWPMIVLRTPKGWTGPK  210 (227)
T ss_pred             CCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCC
T ss_conf             2179778980689999999999999999999999985799878889889996899888875


No 46 
>KOG0225 consensus
Probab=99.49  E-value=1.7e-13  Score=116.70  Aligned_cols=137  Identities=28%  Similarity=0.423  Sum_probs=104.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC
Q ss_conf             88863147999999999999853426887678459998436211434455788765220223306999627632232235
Q gi|254780655|r  128 TTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPIS  207 (673)
Q Consensus       128 ~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~  207 (673)
                      ..|-.|.+++.+.|+|+|.||.+.       +.-.+++-|||+.+.|+.|||+|.|.-|+| ++|+++.||.+.+-++..
T Consensus       163 GnGIVGAQiPLGaGia~A~kY~~~-------~~v~~alYGDGAaNQGQ~fEa~NMA~LW~L-P~IFvCENN~yGMGTs~~  234 (394)
T KOG0225         163 GNGIVGAQIPLGAGIAFAQKYNRE-------DAVCFALYGDGAANQGQVFEAFNMAALWKL-PVIFVCENNHYGMGTSAE  234 (394)
T ss_pred             CCCEECCCCCCCCCHHHHHHHCCC-------CCEEEEEECCCCCCCHHHHHHHHHHHHHCC-CEEEEECCCCCCCCCCHH
T ss_conf             664232577731128999974368-------865999954665444038988539998689-879998268876676034


Q ss_pred             CCCC-CCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH----CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCH----
Q ss_conf             5678-2179988641444444444406788888887511----022102220133455570004771103343722----
Q gi|254780655|r  208 LADS-TDQYARFRASGWNTLSVNGHDHHAITSTLRKAQL----SDKPTMIACETVIGFGSPNRAGTNKVHGSALGQ----  278 (673)
Q Consensus       208 ~~~~-~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak~----~~kP~~I~~~T~kG~G~~~~e~~~~~HG~~l~~----  278 (673)
                      .... ++.++|- .| ..-+.|||.|+.++..|.+.|++    .+.|.++++.|-            ++||+.+++    
T Consensus       235 Rasa~teyykRG-~y-iPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TY------------Ry~GHSmSDPg~s  300 (394)
T KOG0225         235 RASASTEYYKRG-DY-IPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTY------------RYHGHSMSDPGTS  300 (394)
T ss_pred             HHHCCHHHHHCC-CC-CCCEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEE------------EECCCCCCCCCCC
T ss_conf             320382777506-87-875578783124589999999999753799879998634------------6546546899865


Q ss_pred             ----HHHHHHHH
Q ss_conf             ----33212566
Q gi|254780655|r  279 ----EEIKATRK  286 (673)
Q Consensus       279 ----ee~~~~~k  286 (673)
                          ||+...|+
T Consensus       301 YRtReEiq~vR~  312 (394)
T KOG0225         301 YRTREEIQEVRQ  312 (394)
T ss_pred             CCHHHHHHHHHH
T ss_conf             211899998876


No 47 
>KOG0525 consensus
Probab=99.48  E-value=2.3e-13  Score=115.74  Aligned_cols=243  Identities=16%  Similarity=0.263  Sum_probs=166.6

Q ss_pred             HHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHH---HHHHHH-HHHH--------HCCCEEECCCCCCCCCC
Q ss_conf             01003257620023567879987288762200100355530---012454-1111--------00001302454333333
Q gi|254780655|r  411 SGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVFSDYS---RPAIRL-ASLM--------GIRVIHVLTHDSIGLGE  478 (673)
Q Consensus       411 p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~tf~~F~~~~---~~~ir~-~al~--------~~~v~~v~th~gi~~G~  478 (673)
                      .+|.|+.-..||..+++-.|+|. .|-..+..+  +|.||.   ||||-. ++--        ++.-.-+-+.=|. +|.
T Consensus        86 k~rvfntplceqgivgfgig~aa-~g~~aiaei--qfadyifpafdqivneaakfryrsgnqfncg~ltir~p~ga-vgh  161 (362)
T KOG0525          86 KDRVFNTPLCEQGIVGFGIGLAA-MGATAIAEI--QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPWGA-VGH  161 (362)
T ss_pred             CCCCCCCCHHHCCCCEECHHHHH-CCCCEEEEE--EECCCCCHHHHHHHHHHHHHEECCCCCCCCCCEEEECCCCC-CCC
T ss_conf             56302672022154200131254-066158888--50221225589998787762523578445676577455442-455


Q ss_pred             CCCHH-HHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEEC----CCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             33101-0002221011101221121120124577776520256783499952----444433456655322123473799
Q gi|254780655|r  479 DGPTH-QPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLS----RQNLPFLRTQYESNNLCALGAYDY  553 (673)
Q Consensus       479 DGpTH-q~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~----R~~~p~~~~~~~~~~~~~~G~~~~  553 (673)
                      -|--| |+-|  +.+.+.|+++|+-|..+.|.+.++..++.+. +|+++--|    |+.+.   ...+.++.+..+..++
T Consensus       162 g~~yhsqspe--aff~h~pgikvviprsp~qakglllscirdp-np~iffepk~lyr~a~e---dvp~~dy~iplsqaev  235 (362)
T KOG0525         162 GALYHSQSPE--AFFCHVPGIKVVIPRSPRQAKGLLLSCIRDP-NPCIFFEPKILYRQAVE---DVPEGDYMIPLSQAEV  235 (362)
T ss_pred             CCCCCCCCCH--HHEECCCCCEEEECCCCCHHHCEEEEECCCC-CCEEEECHHHHHHHHHH---HCCCCCCCCCCCHHHH
T ss_conf             5301568823--5300489836982489504303142010699-96578452899987663---0787773343217777


Q ss_pred             EECCCCCEEEEECCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHCCCCHHHHHHHCCCCCEEEEECCCCHHHHHHH--
Q ss_conf             85699729999526889999999999997-399439985746581000868899964367977999728602789998--
Q gi|254780655|r  554 ISTPNAQVTIFSSGSELKIAVEACEILSS-RNISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIEAGLRQGWDAF--  630 (673)
Q Consensus       554 ~~~~~~dv~iia~G~~v~~al~aa~~L~~-~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE~g~~~g~~~~--  630 (673)
                      +| +|+|++|++.|..|+.++++|..-++ .|+++.|||+.++-|.|+.  ....++.+..+++|+-|+-+.+|++.-  
T Consensus       236 ir-eg~ditlv~wgtqvh~i~e~a~l~~ek~giscevidlkti~pwd~d--~v~~sv~ktgrllisheapvtggfgaeia  312 (362)
T KOG0525         236 IR-EGSDITLVAWGTQVHVIMEQACLAKEKLGISCEVIDLKTIIPWDKD--TVEESVQKTGRLLISHEAPVTGGFGAEIA  312 (362)
T ss_pred             HH-CCCCEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHH--HHHHHHHHHCEEEEECCCCCCCCCHHHHH
T ss_conf             52-3784389971104689999987667752984699730001575388--89998874161788634775675218889


Q ss_pred             --------HCCC---CCEEEECC-CCCCCCHHHHHHHCCC-CHHHHHHHHHHHHC
Q ss_conf             --------4579---81898357-7676888899998099-98999999999848
Q gi|254780655|r  631 --------IGSD---GSFIGMQG-FGASGSCDLLYQHFGI-NAIAIVDMVERKLS  672 (673)
Q Consensus       631 --------~~~~---~~~igid~-Fg~sg~~~el~~~~Gl-d~~~I~~~i~~~L~  672 (673)
                              +..+   .++.|.|. |+.      +.+-|=| |...|.++|++.++
T Consensus       313 stv~ercfl~leapisrvcg~dtpfp~------vfepfy~ptk~ki~daik~~vn  361 (362)
T KOG0525         313 STVQERCFLNLEAPISRVCGLDTPFPH------VFEPFYMPTKNKILDAIKKTVN  361 (362)
T ss_pred             HHHHHHHHHHCCCCHHHHCCCCCCCCC------CCCCCCCCCHHHHHHHHHHHCC
T ss_conf             999998876045736664068998852------3456326727689999997616


No 48 
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.47  E-value=3.2e-13  Score=114.74  Aligned_cols=145  Identities=24%  Similarity=0.317  Sum_probs=106.2

Q ss_pred             CCEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             87799856520189999999707688998898640003887988988889987306888631479999999999998534
Q gi|254780655|r   72 RDRFVLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLRE  151 (673)
Q Consensus        72 rDr~v~s~GH~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~  151 (673)
                      .+.++.|.|+.....+..+..                      .+|   .......+.|++|.|++.|+|.++|.+    
T Consensus        13 ~~ivv~d~G~~~~~~~~~~~~----------------------~~~---~~~~~~~~~g~mG~~~p~AiGa~~a~p----   63 (168)
T cd00568          13 DAIVVNDAGNSAYWAYRYLPL----------------------RRG---RRFLTSTGFGAMGYGLPAAIGAALAAP----   63 (168)
T ss_pred             CCEEEECCHHHHHHHHHHCCC----------------------CCC---CEEECCCCCCHHHHHHHHHHHHHHHCC----
T ss_conf             969998752769999997562----------------------899---959828987537779999999998789----


Q ss_pred             HCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC-----------CCCCCCCHHHHHHH
Q ss_conf             2688767845999843621143445578876522022330699962763223223-----------55678217998864
Q gi|254780655|r  152 EFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPI-----------SLADSTDQYARFRA  220 (673)
Q Consensus       152 ~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~-----------~~~~~~~~~~~~~a  220 (673)
                             +++|+|++|||+++.  ....+..|.+++++-+++|+||+.+.+-...           ......|..+..++
T Consensus        64 -------~~~vv~i~GDG~f~~--~~~el~ta~~~~l~i~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~  134 (168)
T cd00568          64 -------DRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDFAALAEA  134 (168)
T ss_pred             -------CCEEEEEECCCCCEE--CCHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf             -------983999977974211--31766456531884269999776136779999850289876565888877899997


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf             144444444440678888888751102210222013
Q gi|254780655|r  221 SGWNTLSVNGHDHHAITSTLRKAQLSDKPTMIACET  256 (673)
Q Consensus       221 ~Gw~~~~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T  256 (673)
                      +|+++..|+  +.+++..|+++|...++|++|+++|
T Consensus       135 ~G~~~~~v~--~~~el~~al~~a~~~~~p~li~V~t  168 (168)
T cd00568         135 YGAKGVRVE--DPEDLEAALAEALAAGGPALIEVKT  168 (168)
T ss_pred             CCCEEEEEC--CHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             498699989--9999999999998389978999989


No 49 
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=99.38  E-value=2e-10  Score=94.52  Aligned_cols=105  Identities=16%  Similarity=0.149  Sum_probs=77.2

Q ss_pred             EECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCCCCCEEEEECCCCHHHHHHHH--
Q ss_conf             856997299995268899999999999973994399857465810008688999643679779997286027899984--
Q gi|254780655|r  554 ISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIEAGLRQGWDAFI--  631 (673)
Q Consensus       554 ~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE~g~~~g~~~~~--  631 (673)
                      ...++.|+.||++|+....+.+|.+.|+++|+++.++.++++.||-+   +.+.+++.+.+.++.+|...+. +...+  
T Consensus       269 ~~~edAdi~IV~~GS~~~~~~eAvd~Lr~~G~kvg~l~ir~l~PfP~---~~i~~~l~~~k~ViVvE~N~GQ-l~~~i~~  344 (377)
T PRK08659        269 YMLEDAEVVVVAYGSVARSARRAVKEAREEGIKVGLFRLITVWPFPE---EAIRELAKKVKAIVVPEMNLGQ-MSLEVER  344 (377)
T ss_pred             ECCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCH---HHHHHHHHCCCEEEEECCCCHH-HHHHHHH
T ss_conf             24899989999968557899999999996498688999722069998---9999998569989998077568-9999999


Q ss_pred             --CCCCCEEEECCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf             --57981898357767688889999809998999999999848
Q gi|254780655|r  632 --GSDGSFIGMQGFGASGSCDLLYQHFGINAIAIVDMVERKLS  672 (673)
Q Consensus       632 --~~~~~~igid~Fg~sg~~~el~~~~Gld~~~I~~~i~~~L~  672 (673)
                        ........|.+|  .|-+        ++++.|+++|+++.+
T Consensus       345 ~~~~~~~~~~i~k~--~G~p--------~~~~eI~e~i~~~~~  377 (377)
T PRK08659        345 VVKGRAKVKGINKI--GGEL--------ITPEEILEKIKEVAS  377 (377)
T ss_pred             HHCCCCCEEEEEEE--CCCC--------CCHHHHHHHHHHHHC
T ss_conf             72899864688325--8981--------799999999998639


No 50 
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=99.29  E-value=2.9e-10  Score=93.34  Aligned_cols=233  Identities=18%  Similarity=0.139  Sum_probs=127.0

Q ss_pred             CHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCEEE-CCCCCCCCCCCCCHHHHCCCCCHHH-----
Q ss_conf             2002356787998728876220010035553001245411110000130-2454333333331010002221011-----
Q gi|254780655|r  420 REHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHV-LTHDSIGLGEDGPTHQPVEHLAALR-----  493 (673)
Q Consensus       420 aE~~~~~~aaGla~~~g~~p~~~tf~~F~~~~~~~ir~~al~~~~v~~v-~th~gi~~G~DGpTHq~iedia~lr-----  493 (673)
                      .|.++.+++.|.++ .|.+.+.+|-+.=+.+|.+++-+++..++|++++ ..++|.++|-  ||+..-.|+...+     
T Consensus        55 ~E~aA~~~aiGAs~-aGaRa~TaTSg~Gl~lm~E~l~~a~~~e~P~Vi~~~~R~gPstGl--pt~~~q~Dl~~~~~~~hG  131 (375)
T PRK09627         55 DEISGISVALGASM-SGVKSMTASSGPGISLKAEQIGLGFMAEIPLVIVNVMRGGPSTGL--PTRVAQGDVNQAKNPTHG  131 (375)
T ss_pred             CHHHHHHHHHHHHH-HCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCC--CCCCCCCCHHHHHCCCCC
T ss_conf             68999999999997-498257622775488888898899863798699998758887688--663243408886337787


Q ss_pred             HHCCCCEEEECCHHHHHHHHHHHHCC---CCCCEEEEEC------CCC--CCCCCC----------------CC---C--
Q ss_conf             10122112112012457777652025---6783499952------444--433456----------------65---5--
Q gi|254780655|r  494 AIPDLLVLRPADSIETLECWQVALKE---KNRPSVLSLS------RQN--LPFLRT----------------QY---E--  541 (673)
Q Consensus       494 ~iPnl~v~~P~d~~E~~~~~~~al~~---~~gP~~ir~~------R~~--~p~~~~----------------~~---~--  541 (673)
                      -.|. .|+.|+|..|+..+...|++-   -..|+.+++.      ++.  +|....                .+   .  
T Consensus       132 d~~~-ivl~p~s~qEa~d~t~~Af~lAE~~~~PVivl~D~~lsh~~~~v~~p~~~~v~~~~~~~~~~~~~~~~~~py~~~  210 (375)
T PRK09627        132 DFKS-IALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDETVGHMYGKAVIPDLEEVEKMIINRKEFEGDKKDYKPYGVA  210 (375)
T ss_pred             CCCC-EEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCEECCCHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             6340-677467899999999999999998689889971331002213322699576334556643357885566366789


Q ss_pred             CCC--CCC---CC------------------------------------------CEEEEECCCCCEEEEECCHHHHHHH
Q ss_conf             322--123---47------------------------------------------3799856997299995268899999
Q gi|254780655|r  542 SNN--LCA---LG------------------------------------------AYDYISTPNAQVTIFSSGSELKIAV  574 (673)
Q Consensus       542 ~~~--~~~---~G------------------------------------------~~~~~~~~~~dv~iia~G~~v~~al  574 (673)
                      .+.  ...   .|                                          .++..+.++.|+.||++|+....+.
T Consensus       211 ~~~p~~~~p~~~~~~~~~~g~eh~~~g~~~e~~~~~~~~~~r~~~k~~~~~~~~~~~e~y~~edAe~~iV~~GSt~~~~~  290 (375)
T PRK09627        211 QDEPAVLNPFFKGYRYHVTGLHHGPIGFPTEDGKIVGKLIDRLFNKIESHQDEIEEYEEYMLDDAEILIIAYGSVSLSAK  290 (375)
T ss_pred             CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCHHHHH
T ss_conf             99986458988761799435332555786669999999999999999987653364200268998789999564378999


Q ss_pred             HHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCC-C--CEEEECCCCCCCCHHH
Q ss_conf             999999973994399857465810008688999643679779997286027899984579-8--1898357767688889
Q gi|254780655|r  575 EACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIEAGLRQGWDAFIGSD-G--SFIGMQGFGASGSCDL  651 (673)
Q Consensus       575 ~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE~g~~~g~~~~~~~~-~--~~igid~Fg~sg~~~e  651 (673)
                      +|.+.|+++|+++.++.++++.||-+   ..+.+.+.+.+.++.+|.-.+. +.+.+... +  ....+..|  .|.+  
T Consensus       291 eAv~~Lr~~G~kvg~l~~~~l~PfP~---~~i~e~l~~~k~v~VvE~N~Gq-~~~~i~~~~~~~~~~~i~k~--~G~p--  362 (375)
T PRK09627        291 EAINRLREEGIKVGLFRPITLWPSPA---KRLKEIGDKFEKILVIELNMGQ-YLEEIERVMQRDDFHFLGKA--NGRP--  362 (375)
T ss_pred             HHHHHHHHCCCEEEEEEEEEECCCCH---HHHHHHHHCCCEEEEEECCCHH-HHHHHHHHHCCCCCCEEEEE--CCCC--
T ss_conf             99999997499053797524579998---9999999579989998078159-99999997389875157006--9985--


Q ss_pred             HHHHCCCCHHHHHHHHHHH
Q ss_conf             9998099989999999998
Q gi|254780655|r  652 LYQHFGINAIAIVDMVERK  670 (673)
Q Consensus       652 l~~~~Gld~~~I~~~i~~~  670 (673)
                            ++++.|+++|+++
T Consensus       363 ------f~~~ei~~~i~ei  375 (375)
T PRK09627        363 ------ISPSEIIAKVKEL  375 (375)
T ss_pred             ------CCHHHHHHHHHHC
T ss_conf             ------7999999999619


No 51 
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=99.28  E-value=3.8e-10  Score=92.47  Aligned_cols=237  Identities=14%  Similarity=0.137  Sum_probs=153.7

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCEEE-CCCCCCCCCCCCCHHHHCCCCCH-HHHHC
Q ss_conf             62002356787998728876220010035553001245411110000130-24543333333310100022210-11101
Q gi|254780655|r  419 VREHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHV-LTHDSIGLGEDGPTHQPVEHLAA-LRAIP  496 (673)
Q Consensus       419 IaE~~~~~~aaGla~~~g~~p~~~tf~~F~~~~~~~ir~~al~~~~v~~v-~th~gi~~G~DGpTHq~iedia~-lr~iP  496 (673)
                      --|..+.+++.|.++ .|.+.+++|-+.=+.+|.+.+..++..++|++++ ..++|-+.|   +|+..-.|+.+ ++.-.
T Consensus        54 E~E~aA~~~aiGAs~-aGaRa~TaTSg~Gl~lm~E~l~~aa~~e~P~Viv~~~R~gPs~g---~t~~eQ~D~~~a~~~~g  129 (350)
T PRK07119         54 ESEVAAINMVYGAAA-TGKRVMTSSSSPGISLKQEGISYLAGAELPCVIVNIMRGGPGLG---NIQPSQADYFQAVKGGG  129 (350)
T ss_pred             CCHHHHHHHHHHHHH-HCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC---CCCHHHHHHHHHHHCCC
T ss_conf             877999999999997-29964764367428887758899985488749999975888866---74127778999997277


Q ss_pred             ----CCCEEEECCHHHHHHHHHHHHCC---CCCCEEEEEC------CCCCCCCC--CCC-----------CCCC-CCC--
Q ss_conf             ----22112112012457777652025---6783499952------44443345--665-----------5322-123--
Q gi|254780655|r  497 ----DLLVLRPADSIETLECWQVALKE---KNRPSVLSLS------RQNLPFLR--TQY-----------ESNN-LCA--  547 (673)
Q Consensus       497 ----nl~v~~P~d~~E~~~~~~~al~~---~~gP~~ir~~------R~~~p~~~--~~~-----------~~~~-~~~--  547 (673)
                          .+.|+.|+|.+|+..+...|++-   ...|+.++..      ++.+...+  ...           ...+ ...  
T Consensus       130 hGd~~~ivl~p~s~qEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~e~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  209 (350)
T PRK07119        130 HGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGVLGQMMEPVEFPERASTELPAKDWAVTGTKGREPNIITS  209 (350)
T ss_pred             CCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             88653499817999999999999999999988998997355212110120578634566788776527888888875587


Q ss_pred             -------------------------CCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCC
Q ss_conf             -------------------------4737998569972999952688999999999999739943998574658100086
Q gi|254780655|r  548 -------------------------LGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQS  602 (673)
Q Consensus       548 -------------------------~G~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~  602 (673)
                                               ...++..+.++.|+.||++|+....+.+|.+.|+++|+++.++.++++.||-+  
T Consensus       210 ~~~~p~~~~~~~~~~~~k~~~i~~~~~~~e~y~~~da~~~ii~~Gs~~~~~~eav~~lr~~G~kvg~l~~~~~~PfP~--  287 (350)
T PRK07119        210 LFLDPEELEKHNWRLQAKYAEIEENEVRYEEYNTDDAELVLVAYGTSSRIAKSAVDMAREEGIKVGLFRPITLWPFPE--  287 (350)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEECEEEECEECCCCH--
T ss_conf             777989999999999999999885224165517888999999956346899999999997598126687651068999--


Q ss_pred             HHHHHHHCCCCCEEEEECCCCHHHHHHHHC--CCCCEEEECCCCC-CCCHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf             889996436797799972860278999845--7981898357767-688889999809998999999999848
Q gi|254780655|r  603 DSYRAQIIGSSPIKIAIEAGLRQGWDAFIG--SDGSFIGMQGFGA-SGSCDLLYQHFGINAIAIVDMVERKLS  672 (673)
Q Consensus       603 ~~~~~~il~~~~~~vtiE~g~~~g~~~~~~--~~~~~igid~Fg~-sg~~~el~~~~Gld~~~I~~~i~~~L~  672 (673)
                       +.+.+.+.+.+.++.+|...+ .+.+.+.  ..+. .-+..++. .|-+        ++++-|+++|+++|.
T Consensus       288 -~~i~~~l~~~~~viVvE~n~G-ql~~~v~~~~~~~-~~v~~~~k~~G~~--------~~~~ei~~~i~~~~~  349 (350)
T PRK07119        288 -KALEKLADKVKGFLSVEMSNG-QMVEDVRLAVNGK-KPVEFYGRMGGMV--------PTPDEILEKIKEIAG  349 (350)
T ss_pred             -HHHHHHHHCCCEEEEECCCCC-HHHHHHHHHHCCC-CCEEEECCCCCCC--------CCHHHHHHHHHHHHC
T ss_conf             -999999946998999858886-8999999982899-9746853669988--------899999999999857


No 52 
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.27  E-value=1e-10  Score=96.70  Aligned_cols=148  Identities=26%  Similarity=0.332  Sum_probs=105.5

Q ss_pred             CEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             77998565201899999997076889988986400038879889888899873068886314799999999999985342
Q gi|254780655|r   73 DRFVLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREE  152 (673)
Q Consensus        73 Dr~v~s~GH~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~  152 (673)
                      +.+|-+.|-.|--+|..                 |....  +++      .-..+.-|++|++++.|+|.|+|..     
T Consensus        16 ~~vvs~~G~~sreL~~~-----------------~~~~~--~~~------~~~fy~~GsMG~a~p~AiG~ala~p-----   65 (188)
T cd03371          16 AAVVSTTGMTSRELFEL-----------------RDRPG--GGH------AQDFLTVGSMGHASQIALGIALARP-----   65 (188)
T ss_pred             CEEEECCCCCHHHHHHH-----------------HHCCC--CCC------CCCCEEECHHHHHHHHHHHHHHHCC-----
T ss_conf             98997999885999999-----------------85027--876------6751554312317899999998399-----


Q ss_pred             CCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC--CCCCCCCCCCHHHHHHHCCCC-CCCCC
Q ss_conf             688767845999843621143445578876522022330699962763223--223556782179988641444-44444
Q gi|254780655|r  153 FGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISID--GPISLADSTDQYARFRASGWN-TLSVN  229 (673)
Q Consensus       153 ~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~--~~~~~~~~~~~~~~~~a~Gw~-~~~vd  229 (673)
                            |++|+|+.|||++.  |....+..++.+++.|+++|+-||+.--+  +........|..+.-+++|+. +..| 
T Consensus        66 ------~r~Vv~l~GDGs~l--M~~geL~T~~~~~~~n~~~vv~nN~~~~s~g~q~t~~~~~df~~iA~a~G~~~~~~v-  136 (188)
T cd03371          66 ------DRKVVCIDGDGAAL--MHMGGLATIGGLAPANLIHIVLNNGAHDSVGGQPTVSFDVSLPAIAKACGYRAVYEV-  136 (188)
T ss_pred             ------CCEEEEEECCHHHH--HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEE-
T ss_conf             ------98189995733888--885799999972788779999879652234687665789899999998699827997-


Q ss_pred             CCCHHHHHHHHHHHHHCCCCHHHHHCCCCCC
Q ss_conf             4406788888887511022102220133455
Q gi|254780655|r  230 GHDHHAITSTLRKAQLSDKPTMIACETVIGF  260 (673)
Q Consensus       230 G~d~~~i~~a~~~ak~~~kP~~I~~~T~kG~  260 (673)
                       ++.+++.++++++.+.++|++|++++-+|.
T Consensus       137 -~~~~el~~al~~al~~~gP~~ieV~idpg~  166 (188)
T cd03371         137 -PSLEELVAALAKALAADGPAFIEVKVRPGS  166 (188)
T ss_pred             -CCHHHHHHHHHHHHHCCCCEEEEEEECCCC
T ss_conf             -899999999999984899999999978999


No 53 
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.18  E-value=2.7e-09  Score=86.39  Aligned_cols=100  Identities=16%  Similarity=0.133  Sum_probs=49.8

Q ss_pred             HHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCCC---C---CCCCHHHHC----CCCCHH
Q ss_conf             6787998728876220010--0355530012454111100001302-4543333---3---333101000----222101
Q gi|254780655|r  426 AAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHVL-THDSIGL---G---EDGPTHQPV----EHLAAL  492 (673)
Q Consensus       426 ~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~~---G---~DGpTHq~i----edia~l  492 (673)
                      ..+.|.++..+ +++++.-  ..|+- .-..+..+.-.++|++++. ...+.+.   .   ..++. .++    -|.+.+
T Consensus       405 paaiGa~lA~~-~~vv~i~GDGsf~m-~~~EL~Ta~r~~lpv~ivV~NN~~yg~i~~~~~~~~~~~-~g~~~~~~Df~~~  481 (549)
T PRK06457        405 PGAVGASFASD-RQVIAIVGDGGFAM-TMMELITAKKYSRPVKIIIYNNSKLGMIKFEQEVMGYPE-WGVDLYNPDFSKL  481 (549)
T ss_pred             HHHHHHHHCCC-CCEEEEECCCHHHC-CHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCC-CCCCCCCCCHHHH
T ss_conf             78999986589-94369966607751-489999999958996899997981168999999727997-7785899899999


Q ss_pred             HHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf             1101221121120124577776520256783499952
Q gi|254780655|r  493 RAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLS  529 (673)
Q Consensus       493 r~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~  529 (673)
                      ----|..-++-.+..|+..+++.|++. +||++|-..
T Consensus       482 A~a~G~~g~~V~~~~el~~al~~A~~~-~gP~lIev~  517 (549)
T PRK06457        482 AESVGIKGFRVEDPNELEEAIEEFLNT-EGPAVLDAV  517 (549)
T ss_pred             HHHCCCEEEEECCHHHHHHHHHHHHCC-CCCEEEEEE
T ss_conf             997799799979999999999999818-995999999


No 54 
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.17  E-value=3.2e-10  Score=93.06  Aligned_cols=114  Identities=18%  Similarity=0.321  Sum_probs=89.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC---
Q ss_conf             88863147999999999999853426887678459998436211434455788765220223306999627632232---
Q gi|254780655|r  128 TTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDG---  204 (673)
Q Consensus       128 ~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~---  204 (673)
                      +.|++|.|+++|+|.++|..           ++.|+|++|||+++  +....+..|..++|+-+++++||+.+.+-.   
T Consensus        46 ~~g~mG~glpaAiGa~lA~p-----------~~~Vv~i~GDG~f~--m~~~EL~Ta~~~~lpi~iiV~NN~~~g~i~~~q  112 (177)
T cd02010          46 GLATMGVALPGAIGAKLVYP-----------DRKVVAVSGDGGFM--MNSQELETAVRLKIPLVVLIWNDNGYGLIKWKQ  112 (177)
T ss_pred             CCCHHHHHHHHHHHHHHHCC-----------CCEEEEEECCCCCE--ECCHHHHHHHHHCCCEEEEEEECCHHHHHHHHH
T ss_conf             86368889999999998789-----------98599992898611--066688899972884039999898048999999


Q ss_pred             -----CC--CCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf             -----23--55678217998864144444444440678888888751102210222013
Q gi|254780655|r  205 -----PI--SLADSTDQYARFRASGWNTLSVNGHDHHAITSTLRKAQLSDKPTMIACET  256 (673)
Q Consensus       205 -----~~--~~~~~~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T  256 (673)
                           +.  ......|..+..++||....+|  .+.++|..|+++|.+.++|++|.+.+
T Consensus       113 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V--~~~~el~~al~~a~~~~gp~liev~v  169 (177)
T cd02010         113 EKEYGRDSGVDFGNPDFVKYAESFGAKGYRI--ESADDLLPVLERALAADGVHVIDCPV  169 (177)
T ss_pred             HHHCCCCCCCCCCCCCHHHHHHHCCCEEEEE--CCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             9863975346189999899999879879998--99999999999998489959999998


No 55 
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.12  E-value=2.2e-09  Score=87.02  Aligned_cols=154  Identities=15%  Similarity=0.101  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCC-CH-HHHHHHHHHHHHCCCCCCEECCC--HHH
Q ss_conf             888998865543322034555674000266634454320010032576-20-02356787998728876220010--035
Q gi|254780655|r  372 LVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGV-RE-HAMAAAMNGIALHKGLAPYSGTF--MVF  447 (673)
Q Consensus       372 ~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~p~r~i~~GI-aE-~~~~~~aaGla~~~g~~p~~~tf--~~F  447 (673)
                      .++..+.+.+|+=....+|...+. ..   ...+++-..|.+|+..+- .- ......|.|.++...-+|+++.-  ..|
T Consensus       385 ~~~~~l~~~lp~d~iv~~D~G~~~-~~---~~~~~~~~~p~~~~~~~~~G~mG~glpaAiGA~lA~p~r~VV~i~GDG~f  460 (579)
T TIGR03457       385 QVLRELEKAMPEDAIVSTDIGNIN-SV---ANSYLRFEKPRKFLAPMSFGNCGYAFPTIIGAKIAAPDRPVVAYAGDGAW  460 (579)
T ss_pred             HHHHHHHHHCCCCCEEEECCCCHH-HH---HHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf             999999976899869996781059-99---99986425887165057656654557999999984899828999883787


Q ss_pred             HHHHHHHHHHHHHHHCCCEEEC-CCCCCCCC---C----CCC---H-HHHCCCCC-HHHHHCCCCEEEECCHHHHHHHHH
Q ss_conf             5530012454111100001302-45433333---3----331---0-10002221-011101221121120124577776
Q gi|254780655|r  448 SDYSRPAIRLASLMGIRVIHVL-THDSIGLG---E----DGP---T-HQPVEHLA-ALRAIPDLLVLRPADSIETLECWQ  514 (673)
Q Consensus       448 ~~~~~~~ir~~al~~~~v~~v~-th~gi~~G---~----DGp---T-Hq~iedia-~lr~iPnl~v~~P~d~~E~~~~~~  514 (673)
                      +- .-.-+--+.-.++|++++. ...|.+.-   +    ++.   | -.+--|.+ +-+++ ++.-++-.++.|+..+++
T Consensus       461 ~m-~~~EL~Ta~r~~lpi~~vV~NN~~yg~~~~~q~~~~~~~~~g~~~~~~~dfa~~A~a~-G~~g~~V~~~~el~~Al~  538 (579)
T TIGR03457       461 GM-SMNEIMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESELSFAGIADAM-GAKGVVVDKPEDVGPALK  538 (579)
T ss_pred             HH-HHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHH
T ss_conf             25-2999999999786928999978644489999998708963102368999989999977-997999799999999999


Q ss_pred             HHHCCC--CCCEEE--EECCC
Q ss_conf             520256--783499--95244
Q gi|254780655|r  515 VALKEK--NRPSVL--SLSRQ  531 (673)
Q Consensus       515 ~al~~~--~gP~~i--r~~R~  531 (673)
                      .|+...  ++|++|  +..|.
T Consensus       539 ~Ala~~~~g~P~lIdV~vd~~  559 (579)
T TIGR03457       539 KAIAAQAEGKTTVIEIVCTRE  559 (579)
T ss_pred             HHHHCCCCCCCEEEEEEECCC
T ss_conf             998608999968999996833


No 56 
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.10  E-value=4.2e-10  Score=92.21  Aligned_cols=32  Identities=9%  Similarity=0.147  Sum_probs=22.0

Q ss_pred             CCCEEEECCHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf             221121120124577776520256783499952
Q gi|254780655|r  497 DLLVLRPADSIETLECWQVALKEKNRPSVLSLS  529 (673)
Q Consensus       497 nl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~  529 (673)
                      |+.=++-.++.|+..+++.|++. ++|+.|-..
T Consensus       520 G~~g~rV~~~~el~~Al~~Al~~-~gP~lIeV~  551 (594)
T PRK09107        520 GAVGIRCEKPGDLDDAIQEMIDV-DKPVIFDCR  551 (594)
T ss_pred             CCEEEEECCHHHHHHHHHHHHHC-CCCEEEEEE
T ss_conf             99799979999999999999828-998899999


No 57 
>pfam02775 TPP_enzyme_C Thiamine pyrophosphate enzyme, C-terminal TPP binding domain.
Probab=99.09  E-value=4.2e-10  Score=92.21  Aligned_cols=113  Identities=21%  Similarity=0.318  Sum_probs=86.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC-
Q ss_conf             6888631479999999999998534268876784599984362114344557887652202233069996276322322-
Q gi|254780655|r  127 ATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGP-  205 (673)
Q Consensus       127 ~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~-  205 (673)
                      ...|++|.+++.|+|.++|..           |.+|+|++|||+++  +....+..|.+++++-+++++||+.+.+-.. 
T Consensus        25 ~~~g~mG~~~p~AiGa~~a~p-----------~~~vi~i~GDG~f~--~~~~el~Ta~~~~~~i~~iv~nN~~yg~~~~~   91 (150)
T pfam02775        25 GGLGTMGYGLPAAIGAKLARP-----------DRPVVAIAGDGGFQ--MNGQELATAVRYNLPITVVVLNNGGYGMTRGQ   91 (150)
T ss_pred             CCCCHHHHHHHHHHHHHHHCC-----------CCEEEEEECCCCHH--CCCCHHHHHHHHCCCCCEEEEECCHHHHHHHH
T ss_conf             987323228999999999789-----------98499998897211--13437999998488856899976425888999


Q ss_pred             ------------CCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             ------------3556782179988641444444444406788888887511022102220
Q gi|254780655|r  206 ------------ISLADSTDQYARFRASGWNTLSVNGHDHHAITSTLRKAQLSDKPTMIAC  254 (673)
Q Consensus       206 ------------~~~~~~~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak~~~kP~~I~~  254 (673)
                                  .......|..+..+++|.+..+|+  +.++|.+++++|.+.++|++|++
T Consensus        92 q~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~gP~~ieV  150 (150)
T pfam02775        92 QTPFGGKRYSGPDGDLPPVDFAKLAEAYGAKGARVE--SPEELEEALKEALAHDGPALIDV  150 (150)
T ss_pred             HHHHCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             887429974565678888789999998598699978--99999999999982899989959


No 58 
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.09  E-value=4.5e-10  Score=91.99  Aligned_cols=114  Identities=24%  Similarity=0.410  Sum_probs=88.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC------
Q ss_conf             88631479999999999998534268876784599984362114344557887652202233069996276322------
Q gi|254780655|r  129 TGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISI------  202 (673)
Q Consensus       129 tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si------  202 (673)
                      -|++|.|++.|+|.++|..           ++.|+|++|||+++  +....+..|.+++++-+++++||+.+.+      
T Consensus        49 ~g~mG~~lpaAIGa~la~p-----------~r~vv~i~GDG~f~--m~~~EL~Ta~~~~lpi~~iV~NN~~~g~i~~~q~  115 (186)
T cd02015          49 LGTMGFGLPAAIGAKVARP-----------DKTVICIDGDGSFQ--MNIQELATAAQYNLPVKIVILNNGSLGMVRQWQE  115 (186)
T ss_pred             CCHHHHHHHHHHHHHHHCC-----------CCEEEEEECCCHHH--CCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHH
T ss_conf             7356659999999998689-----------98189997670775--0359999999866994799998970688999999


Q ss_pred             ---CCCC---CCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCC
Q ss_conf             ---3223---556782179988641444444444406788888887511022102220133
Q gi|254780655|r  203 ---DGPI---SLADSTDQYARFRASGWNTLSVNGHDHHAITSTLRKAQLSDKPTMIACETV  257 (673)
Q Consensus       203 ---~~~~---~~~~~~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T~  257 (673)
                         .+..   ......|..+..++||++...|+  +.++|.+++++|.+.++|++|.+++-
T Consensus       116 ~~~~~~~~~~~~~~~pd~~~iA~a~G~~~~~v~--~~~el~~al~~a~~~~gP~lieV~id  174 (186)
T cd02015         116 LFYEGRYSHTTLDSNPDFVKLAEAYGIKGLRVE--KPEELEAALKEALASDGPVLLDVLVD  174 (186)
T ss_pred             HHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf             972897666567888776899997597699978--99999999999984899799999988


No 59 
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.09  E-value=4.5e-10  Score=92.01  Aligned_cols=116  Identities=22%  Similarity=0.314  Sum_probs=89.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC---
Q ss_conf             68886314799999999999985342688767845999843621143445578876522022330699962763223---
Q gi|254780655|r  127 ATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISID---  203 (673)
Q Consensus       127 ~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~---  203 (673)
                      ..-|++|.|++.|+|.++|..           ++.|+|++|||+++  +..-.+..|.+++++-+++++||+.+..-   
T Consensus        48 ~~~g~mG~glpaAiGa~la~p-----------~~~Vv~i~GDG~f~--m~~~El~Ta~~~~lpi~~vV~nN~~~g~i~~~  114 (178)
T cd02014          48 GLLATMGNGLPGAIAAKLAYP-----------DRQVIALSGDGGFA--MLMGDLITAVKYNLPVIVVVFNNSDLGFIKWE  114 (178)
T ss_pred             CCCCHHHHHHHHHHHHHHHCC-----------CCEEEEEECCCHHH--CCHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
T ss_conf             886537789999999998489-----------98089997770674--06189998998589813999989615899999


Q ss_pred             ----C--CCC-CCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCC
Q ss_conf             ----2--235-56782179988641444444444406788888887511022102220133
Q gi|254780655|r  204 ----G--PIS-LADSTDQYARFRASGWNTLSVNGHDHHAITSTLRKAQLSDKPTMIACETV  257 (673)
Q Consensus       204 ----~--~~~-~~~~~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T~  257 (673)
                          +  ... .....|..+.-++||.+...|+  +.+++..|+++|.+.++|++|++.+-
T Consensus       115 q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~gP~lieV~vd  173 (178)
T cd02014         115 QEVMGQPEFGVDLPNPDFAKIAEAMGIKGIRVE--DPDELEAALDEALAADGPVVIDVVTD  173 (178)
T ss_pred             HHHHCCCCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             998579975253799988999997697079978--99999999999996899799999808


No 60 
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.09  E-value=6.3e-10  Score=90.93  Aligned_cols=119  Identities=10%  Similarity=0.060  Sum_probs=54.2

Q ss_pred             CCHHHCCCCCC-CH-HHHHHHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCCC---CC--
Q ss_conf             20010032576-20-02356787998728876220010--0355530012454111100001302-4543333---33--
Q gi|254780655|r  409 DFSGRYLHYGV-RE-HAMAAAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHVL-THDSIGL---GE--  478 (673)
Q Consensus       409 ~~p~r~i~~GI-aE-~~~~~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~~---G~--  478 (673)
                      ..|.+|+.-|- .- .-....+.|.++...=+++++.-  ..|. +.-.-+-.+.-.++|++++. ...+.+.   .+  
T Consensus       425 ~~p~~~i~~~~~G~mG~glpaAiGA~lA~p~r~Vv~i~GDGsf~-mt~qEL~Ta~r~~lpi~iiV~NN~~yg~ir~~q~~  503 (587)
T PRK06965        425 NEPRRWINSGGLGTMGVGLPYAMGVKMAHPDDDVVCITGEGSIQ-MCIQELSTCLQYDTPVKIISLNNRYLGMVRQWQQI  503 (587)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHH
T ss_conf             68974036876754000568999999858999589998845887-65999999999689928999958723599999998


Q ss_pred             --CCCH----HHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             --3310----1000222101110122112112012457777652025678349995
Q gi|254780655|r  479 --DGPT----HQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSL  528 (673)
Q Consensus       479 --DGpT----Hq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~  528 (673)
                        +|..    .+++=|.+-+----++.-++-.++.|+..+++.|++.+++|+.|=.
T Consensus       504 ~~~~~~~~~~~~~~Pdf~~lA~a~G~~g~~V~~~~eL~~al~~Al~~~~~p~lidV  559 (587)
T PRK06965        504 EYSKRYSHSYMDALPDFVKLAEAYGHVGMRIEKTSDVEPALKEALRLKDRTVFLDF  559 (587)
T ss_pred             HCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             71897665577899899999997799899979999999999999864898099999


No 61 
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.08  E-value=6.4e-10  Score=90.86  Aligned_cols=101  Identities=16%  Similarity=0.121  Sum_probs=52.0

Q ss_pred             HHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCCC-----CCCCCHHHHC----CCCCHHHH
Q ss_conf             787998728876220010--0355530012454111100001302-4543333-----3333101000----22210111
Q gi|254780655|r  427 AMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHVL-THDSIGL-----GEDGPTHQPV----EHLAALRA  494 (673)
Q Consensus       427 ~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~~-----G~DGpTHq~i----edia~lr~  494 (673)
                      .|.|.++...-+|+++.-  ..|+- .-.-+..+.-.++|++++. ...+++.     -.+|-.+.+.    -|.+-+--
T Consensus       416 aAIGA~lA~P~r~Vv~i~GDG~f~m-~~~EL~Tavr~~lpv~ivV~NN~~~g~i~~~~~~~g~~~~~~~~~~~Dfa~lA~  494 (578)
T PRK06546        416 HAIGAQAADPGRQVISMSGDGGLSM-LMGELLTVALHDLPVKVVVFNNSSLGMVKLEMLVDGLPDFGTDVPDVDFAAIAA  494 (578)
T ss_pred             HHHHHHHHCCCCCEEEEECCCHHHH-HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf             9999998589995899989408887-699999999978897899997843579999998648977557799989999999


Q ss_pred             HCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf             01221121120124577776520256783499952
Q gi|254780655|r  495 IPDLLVLRPADSIETLECWQVALKEKNRPSVLSLS  529 (673)
Q Consensus       495 iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~  529 (673)
                      =-|+.-++-.++.|+..+++.|+.. +||+.|-..
T Consensus       495 a~G~~g~rV~~~~el~~al~~Al~~-~gP~lIeV~  528 (578)
T PRK06546        495 ALGIHAVRVEDPADIRGALKEAFAH-DGPALVDVV  528 (578)
T ss_pred             HCCCEEEEECCHHHHHHHHHHHHHC-CCCEEEEEE
T ss_conf             7799899979999999999999818-996899998


No 62 
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.07  E-value=5.9e-10  Score=91.11  Aligned_cols=114  Identities=25%  Similarity=0.278  Sum_probs=88.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC---
Q ss_conf             88863147999999999999853426887678459998436211434455788765220223306999627632232---
Q gi|254780655|r  128 TTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDG---  204 (673)
Q Consensus       128 ~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~---  204 (673)
                      ..|++|.|+++|+|.++|..           ++.|+|++|||+++  +....+.-|.+++|+-+++++||+.+..-.   
T Consensus        46 ~~g~mG~~lpaaiGa~lA~p-----------~~~Vv~i~GDG~f~--m~~~EL~Ta~~~~lpi~~iV~nN~~~~~i~~~q  112 (172)
T cd02004          46 TFGTLGVGLGYAIAAALARP-----------DKRVVLVEGDGAFG--FSGMELETAVRYNLPIVVVVGNNGGWYQGLDGQ  112 (172)
T ss_pred             CCCHHHHHHHHHHHHHHHCC-----------CCEEEEEECCCCHH--CCCHHHHHHHHHCCCEEEEEEECCCHHHHHHHH
T ss_conf             87647779999999999789-----------98499997797340--240788899984988599998288328999998


Q ss_pred             -------C--CCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf             -------2--355678217998864144444444440678888888751102210222013
Q gi|254780655|r  205 -------P--ISLADSTDQYARFRASGWNTLSVNGHDHHAITSTLRKAQLSDKPTMIACET  256 (673)
Q Consensus       205 -------~--~~~~~~~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T  256 (673)
                             .  .......|..+.-++||....+|+  +.+++.+|+++|.+.++|++|.+.+
T Consensus       113 ~~~~~~~~~~~~~~~~~df~~iA~a~G~~~~~v~--~~~el~~al~~a~~~~~p~liev~i  171 (172)
T cd02004         113 QLSYGLGLPVTTLLPDTRYDLVAEAFGGKGELVT--TPEELKPALKRALASGKPALINVII  171 (172)
T ss_pred             HHHHCCCCCCEECCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             9872689874321899877899997598289978--9999999999999589969999981


No 63 
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway.  Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.07  E-value=5.7e-10  Score=91.21  Aligned_cols=118  Identities=21%  Similarity=0.265  Sum_probs=89.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEE-ECCCCCCCC
Q ss_conf             0688863147999999999999853426887678459998436211434455788765220223306999-627632232
Q gi|254780655|r  126 EATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLW-DNNGISIDG  204 (673)
Q Consensus       126 ~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~-d~N~~si~~  204 (673)
                      -...|++|++++.|+|+|++..            ++|+|+-|||++.  |...+|..++.++..|+++|+ ||+.+..-|
T Consensus        38 f~~~GsMG~~~~~alG~al~~p------------~kVi~idGDGs~l--M~lg~LaTi~~~~~~nl~~ivlnN~~~~s~G  103 (157)
T cd02001          38 FYMLGSMGLAGSIGLGLALGLS------------RKVIVVDGDGSLL--MNPGVLLTAGEFTPLNLILVVLDNRAYGSTG  103 (157)
T ss_pred             EEEECHHHHHHHHHHHHHHCCC------------CCEEEEECCHHHH--HCCCHHHHHHHCCCCCEEEEEEECCCCCCCC
T ss_conf             6865401328899999985389------------9689995755887--5246199998638988799999797532467


Q ss_pred             -CCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCC
Q ss_conf             -2355678217998864144444444440678888888751102210222013345
Q gi|254780655|r  205 -PISLADSTDQYARFRASGWNTLSVNGHDHHAITSTLRKAQLSDKPTMIACETVIG  259 (673)
Q Consensus       205 -~~~~~~~~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T~kG  259 (673)
                       ........|..+.-+++||.+..++  +.+++..+++++.+.++|++|+++..+|
T Consensus       104 gQ~t~~~~~df~~iA~a~G~~~~~v~--~~~el~~al~~~l~~~GP~fIeV~I~pG  157 (157)
T cd02001         104 GQPTPSSNVNLEAWAAACGYLVLSAP--LLGGLGSEFAGLLATTGPTLLHAPIAPG  157 (157)
T ss_pred             CCCCCCCCCCHHHHHHHCCCCEEEEC--CHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf             85675446699999998698579958--9999999999998499998999995689


No 64 
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.06  E-value=6.7e-10  Score=90.74  Aligned_cols=119  Identities=13%  Similarity=0.142  Sum_probs=55.7

Q ss_pred             CCHHHCCCCCC-CH-HHHHHHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEE-ECCCCCCCCC------
Q ss_conf             20010032576-20-02356787998728876220010--03555300124541111000013-0245433333------
Q gi|254780655|r  409 DFSGRYLHYGV-RE-HAMAAAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIH-VLTHDSIGLG------  477 (673)
Q Consensus       409 ~~p~r~i~~GI-aE-~~~~~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~-v~th~gi~~G------  477 (673)
                      ..|.+|+.-|- .- ......|.|.++...-+++++.-  ..|.- .-.-|--+.-.++|+++ |+...|.+.=      
T Consensus       435 ~~p~~~l~s~~~GsmG~glPaAiGA~lA~P~r~Vv~i~GDGsf~m-t~qEL~Tavr~~lpi~ivV~NN~~yg~Ir~~Q~~  513 (612)
T PRK07789        435 EKPRTWLNSGGLGTMGYAVPAAMGAKVGRPDKEVWAIDGDGCFQM-TNQELATCAIEGIPIKVALINNGNLGMVRQWQTL  513 (612)
T ss_pred             CCCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH-HHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHH
T ss_conf             389834168765448889999999998689993899985368633-2999999999689948999968830689999998


Q ss_pred             -CCCC---H-----HHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             -3331---0-----1000222101110122112112012457777652025678349995
Q gi|254780655|r  478 -EDGP---T-----HQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSL  528 (673)
Q Consensus       478 -~DGp---T-----Hq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~  528 (673)
                       .+|.   |     +..+-|.+.+..--|+.-++=.++.|+..+++.|+..+++|+.|=.
T Consensus       514 ~~~~~~~~~~~~~~~~~~PDf~~lA~a~G~~g~rv~~~~el~~al~~Al~~~d~P~lIdv  573 (612)
T PRK07789        514 FYEERYSNTDLNTGSHRIPDFVKLAEALGCVGLRCEREEDVDAVIEKARAINDRPVVIDF  573 (612)
T ss_pred             HCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             708875655467687889899999997798799979999999999999855999589999


No 65 
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.06  E-value=8.5e-10  Score=89.99  Aligned_cols=85  Identities=14%  Similarity=0.067  Sum_probs=32.2

Q ss_pred             ECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHC-CCCCCCCCCCCH-HHHHHHHHHH
Q ss_conf             43621143445578876522022330699962763223223556782179988641-444444444406-7888888875
Q gi|254780655|r  166 VGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRAS-GWNTLSVNGHDH-HAITSTLRKA  243 (673)
Q Consensus       166 iGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~-Gw~~~~vdG~d~-~~i~~a~~~a  243 (673)
                      .|=|.+   .+.-++..|-..+. +|++|--....+.-+.-......+....++.+ -|.+...+..|+ ..|.+|++.|
T Consensus        72 ~GpG~~---N~~~~i~~A~~~~~-Pll~i~G~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~~~~~~~i~~~i~~A~~~A  147 (521)
T PRK07092         72 SAAGVG---NAMGNLFTAFKNHT-PLVITAGQQARSILPFEPFLAAVDAAELPKPYVKWSIEPARAEDVPAAIARAYHIA  147 (521)
T ss_pred             CCCHHH---HHHHHHHHHHHHCC-CEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHH
T ss_conf             783799---89999999986489-98998588764555767430216899887655242654089999999999999999


Q ss_pred             HHC-CCCHHHHH
Q ss_conf             110-22102220
Q gi|254780655|r  244 QLS-DKPTMIAC  254 (673)
Q Consensus       244 k~~-~kP~~I~~  254 (673)
                      ... .+|+.|..
T Consensus       148 ~~~~~GPV~l~i  159 (521)
T PRK07092        148 MQPPRGPVFVSI  159 (521)
T ss_pred             HHCCCCCEEEEE
T ss_conf             648998299992


No 66 
>PRK08266 hypothetical protein; Provisional
Probab=99.06  E-value=7e-10  Score=90.61  Aligned_cols=29  Identities=17%  Similarity=0.198  Sum_probs=15.7

Q ss_pred             CCCEEEECCHHHHHHHHHHHHCCCCCCEEE
Q ss_conf             221121120124577776520256783499
Q gi|254780655|r  497 DLLVLRPADSIETLECWQVALKEKNRPSVL  526 (673)
Q Consensus       497 nl~v~~P~d~~E~~~~~~~al~~~~gP~~i  526 (673)
                      ++.-++..+..|+..+++.+++. ++|+.|
T Consensus       489 G~~~~~v~~~~el~~al~~a~~~-~gp~lI  517 (531)
T PRK08266        489 GVPAFRVDSPEELRAALEAALAL-GGPYLI  517 (531)
T ss_pred             CCEEEEECCHHHHHHHHHHHHHC-CCCEEE
T ss_conf             99799979999999999999828-991999


No 67 
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=99.06  E-value=6.4e-10  Score=90.86  Aligned_cols=103  Identities=15%  Similarity=0.065  Sum_probs=53.0

Q ss_pred             HHHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCCC---------CC--CCCHHHHCCCCC
Q ss_conf             56787998728876220010--0355530012454111100001302-4543333---------33--331010002221
Q gi|254780655|r  425 AAAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHVL-THDSIGL---------GE--DGPTHQPVEHLA  490 (673)
Q Consensus       425 ~~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~~---------G~--DGpTHq~iedia  490 (673)
                      ...|.|.++...-+++++.-  ..|+- .-..+..+.-.++|++++. ...|.+.         |.  .+.++..--|.+
T Consensus       425 lp~AiGaalA~p~r~Vv~~~GDGsf~m-~~~eL~Ta~r~~lpv~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~df~  503 (564)
T PRK08155        425 LPAAIGAALANPDRKVLCFSGDGSLMM-NIQEMATAAENQLDVKIILMNNEALGLVHQQQSLFYKQRVFAATYPGKINFM  503 (564)
T ss_pred             HHHHHHHHHHCCCCCEEEEECCHHHHH-HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCHH
T ss_conf             789999998489982899974178643-0999999999597908999969985077889887408886554679998999


Q ss_pred             HHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf             011101221121120124577776520256783499952
Q gi|254780655|r  491 ALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLS  529 (673)
Q Consensus       491 ~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~  529 (673)
                      .+----++.-++..+..|+..+++.|++. +||+.|-..
T Consensus       504 ~~A~a~G~~~~~V~~~~el~~al~~al~~-~gp~lIev~  541 (564)
T PRK08155        504 QIAAGFGLETCDLNNEADPQAALQEAINR-PGPALIHVR  541 (564)
T ss_pred             HHHHHCCCEEEEECCHHHHHHHHHHHHCC-CCCEEEEEE
T ss_conf             99997899799969999999999999758-994999999


No 68 
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.06  E-value=6.4e-10  Score=90.88  Aligned_cols=151  Identities=14%  Similarity=0.024  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCC-CHH-HHHHHHHHHHHCCCCCCEECCC--HHH
Q ss_conf             888998865543322034555674000266634454320010032576-200-2356787998728876220010--035
Q gi|254780655|r  372 LVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGV-REH-AMAAAMNGIALHKGLAPYSGTF--MVF  447 (673)
Q Consensus       372 ~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~p~r~i~~GI-aE~-~~~~~aaGla~~~g~~p~~~tf--~~F  447 (673)
                      .++..+.+..|+=-....|...+. ..   ...+++-..|.+|+.-|- .-- .....|.|.++...-+|+++.-  ..|
T Consensus       370 ~~~~~l~~~l~~~~ii~~D~G~~~-~~---~~~~~~~~~p~~~~~~~~~G~mG~~lpaAiGa~lA~p~r~vv~i~GDG~f  445 (560)
T PRK08527        370 WVIERCAKLLGDDAIITTDVGQHQ-MW---VAQFYPFNRPRQLATSGGLGTMGYGLPAALGAKLAVPEKVVINFTGDGSI  445 (560)
T ss_pred             HHHHHHHHHCCCCCEEEECCCCHH-HH---HHHHCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf             999999976799848995587226-88---98733357887575478866778713899998874899968999781798


Q ss_pred             HHHHHHHHHHHHHHHCCCEEEC-CCCCCCC---CC---CCCHHHH-----CCCCCHHHHHCCCCEEEECCHHHHHHHHHH
Q ss_conf             5530012454111100001302-4543333---33---3310100-----022210111012211211201245777765
Q gi|254780655|r  448 SDYSRPAIRLASLMGIRVIHVL-THDSIGL---GE---DGPTHQP-----VEHLAALRAIPDLLVLRPADSIETLECWQV  515 (673)
Q Consensus       448 ~~~~~~~ir~~al~~~~v~~v~-th~gi~~---G~---DGpTHq~-----iedia~lr~iPnl~v~~P~d~~E~~~~~~~  515 (673)
                      +- .-..+..+...++|++++. ..++.+.   .+   -|..+.+     --|.+.+-.--|+.-++..+..|+..+++.
T Consensus       446 ~m-~~~EL~Ta~r~~lpv~ivV~NN~~~g~i~~~q~~~~~~~~~~~d~~~~pdf~~~A~a~G~~g~~V~~~~el~~Al~~  524 (560)
T PRK08527        446 LM-NIQELMTAVEYGIPVINIILNNNFLGMVRQWQTFFYEERYSQTDLSTQPDFVKLAEGFGGIGFRVTTKEEFDKALKQ  524 (560)
T ss_pred             HH-HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHH
T ss_conf             66-59999999996889589999699518999999986188877678889989999999789989996999999999999


Q ss_pred             HHCCCCCCEEEEE
Q ss_conf             2025678349995
Q gi|254780655|r  516 ALKEKNRPSVLSL  528 (673)
Q Consensus       516 al~~~~gP~~ir~  528 (673)
                      |+++ ++|++|=.
T Consensus       525 a~~~-~~p~lIeV  536 (560)
T PRK08527        525 ALKS-DKVSLIDV  536 (560)
T ss_pred             HHHC-CCCEEEEE
T ss_conf             9818-99399999


No 69 
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.06  E-value=7.4e-10  Score=90.41  Aligned_cols=120  Identities=16%  Similarity=0.065  Sum_probs=57.9

Q ss_pred             CCCCHHHCCCCCCCHHHH---HHHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCCC---C
Q ss_conf             432001003257620023---56787998728876220010--0355530012454111100001302-4543333---3
Q gi|254780655|r  407 KSDFSGRYLHYGVREHAM---AAAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHVL-THDSIGL---G  477 (673)
Q Consensus       407 ~~~~p~r~i~~GIaE~~~---~~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~~---G  477 (673)
                      +-+.|.||+.-+- =..|   ...|.|.++...-+|+++.-  ..|+- .-.-+..+.-.++|++++. ...+++.   .
T Consensus       394 ~~~~~~~~~~s~~-~GsmG~glpaAIGa~~A~p~r~Vv~i~GDG~f~m-~~~EL~Ta~r~~lpv~ivV~NN~~~g~i~~~  471 (574)
T PRK09124        394 KMNGKRRLLGSFN-HGSMANAMPQALGAQAAHPGRQVVSLSGDGGFSM-LMGDFLSLVQLKLPVKIVVFNNSVLGFVAME  471 (574)
T ss_pred             CCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHH-HHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
T ss_conf             2458983203787-6652005799999998689994899988628875-4999999999788958999978167899999


Q ss_pred             C--CCC----HHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf             3--331----010002221011101221121120124577776520256783499952
Q gi|254780655|r  478 E--DGP----THQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLS  529 (673)
Q Consensus       478 ~--DGp----THq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~  529 (673)
                      +  .|.    |...--|.+.+.---|+.-++-.++.|+..+++.|++. +||+.|-..
T Consensus       472 ~~~~g~~~~g~~l~~pDfa~lA~a~G~~g~rV~~~~el~~al~~Al~~-~gP~lieV~  528 (574)
T PRK09124        472 MKAGGYLTDGTDLHNPDFAAIANAAGITGIRVEKASELDGALQRAFAH-DGPALVDVV  528 (574)
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHC-CCCEEEEEE
T ss_conf             996399887785899899999997799799979999999999999818-997999999


No 70 
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.06  E-value=6.8e-10  Score=90.67  Aligned_cols=121  Identities=16%  Similarity=0.135  Sum_probs=58.1

Q ss_pred             CCCCCHHHCCCCC-CCHHH-HHHHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCCC---C
Q ss_conf             5432001003257-62002-356787998728876220010--0355530012454111100001302-4543333---3
Q gi|254780655|r  406 SKSDFSGRYLHYG-VREHA-MAAAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHVL-THDSIGL---G  477 (673)
Q Consensus       406 ~~~~~p~r~i~~G-IaE~~-~~~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~~---G  477 (673)
                      ++-..|.+|+.-+ ..--. ....|.|.++...-+|+++.-  ..|+- .-..+.-+.-.++|++++. ...+.+.   .
T Consensus       407 ~~~~~p~~~~~~~~~G~mG~glpaAiGA~lA~p~r~Vv~i~GDG~f~m-~~~EL~Ta~r~~lpi~ivV~NN~~yg~ir~~  485 (570)
T PRK06725        407 YKAKNPRTFLTSGGLGTMGFGFPAAIGAQLAKEEELVICIAGDASFQM-NIQELQTIAENNIPVKVFIINNKFLGMVRQW  485 (570)
T ss_pred             HHCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCHHHHH-HHHHHHHHHHHCCCCEEEEEECCCHHHHHHH
T ss_conf             632588726526877764560799999998489981899977527752-2999999999689938999979720599999


Q ss_pred             C----CCC---HHHHCCCCCH-HHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf             3----331---0100022210-11101221121120124577776520256783499952
Q gi|254780655|r  478 E----DGP---THQPVEHLAA-LRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLS  529 (673)
Q Consensus       478 ~----DGp---THq~iedia~-lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~  529 (673)
                      +    ++.   |-.+--|.+- -+++ ++.-++-.++.|+..+++.|+++ +||+.|-..
T Consensus       486 q~~~~~~~~~~~~l~~pdf~~~A~a~-G~~g~~V~~~~eL~~Al~~Al~~-~gP~lIev~  543 (570)
T PRK06725        486 QEMFYENRLSESKIGSPDFVKVAEAY-GVKGLRATNSTEAKQVMLEAFAH-EGPVVVDFC  543 (570)
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHCC-CCCEEEEEE
T ss_conf             99862898675748999999999977-99799979999999999999819-998999999


No 71 
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=99.05  E-value=6.8e-10  Score=90.67  Aligned_cols=123  Identities=15%  Similarity=0.146  Sum_probs=57.9

Q ss_pred             CCCCCCHHHCCCC-CCCHHH-HHHHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCCC---
Q ss_conf             4543200100325-762002-356787998728876220010--0355530012454111100001302-4543333---
Q gi|254780655|r  405 ISKSDFSGRYLHY-GVREHA-MAAAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHVL-THDSIGL---  476 (673)
Q Consensus       405 ~~~~~~p~r~i~~-GIaE~~-~~~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~~---  476 (673)
                      +++-..|.||+.- |..--. ....+.|.++...=+|+++.-  ..|+- .-..+.-+.-.++|++++. ...+.+.   
T Consensus       403 ~~~~~~p~~~~~~~g~GsmG~glpaAiGA~lA~pdr~Vv~i~GDGsf~m-~~qEL~Tavr~~lpv~ivV~NN~~yg~i~~  481 (586)
T PRK06276        403 YFQTSAPRSFISSGGLGTMGFGFPAAIGAKVARPDANVIAVTGDGGFLM-NSQELATIAEYDIPVIVVIFDNRTLGMVYQ  481 (586)
T ss_pred             HHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCHHHHH-HHHHHHHHHHHCCCCEEEEEECCCCHHHHH
T ss_conf             4115899838606887775454799999998589996899988568755-099999999978894899997872059999


Q ss_pred             CC----C---CCHHHH-CCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf             33----3---310100-02221011101221121120124577776520256783499952
Q gi|254780655|r  477 GE----D---GPTHQP-VEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLS  529 (673)
Q Consensus       477 G~----D---GpTHq~-iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~  529 (673)
                      .+    +   ..++.. .-|.+-+-.--|+.=++-.++.|+..+++.|++. +||+.|-..
T Consensus       482 ~q~~~~~~~~~~~~~~~~pDf~~lA~a~G~~g~rV~~~~el~~Al~~A~~~-~gP~lIeV~  541 (586)
T PRK06276        482 WQNLYYGKRQSAVHLGETPDFVKLAESYGVDALRIEKPGEINEALKTAINS-GEPYLLDII  541 (586)
T ss_pred             HHHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHC-CCCEEEEEE
T ss_conf             999862886665667999999999997799799979999999999999808-997899999


No 72 
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.05  E-value=8.5e-10  Score=89.98  Aligned_cols=32  Identities=13%  Similarity=0.087  Sum_probs=22.6

Q ss_pred             CCCEEEECCHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf             221121120124577776520256783499952
Q gi|254780655|r  497 DLLVLRPADSIETLECWQVALKEKNRPSVLSLS  529 (673)
Q Consensus       497 nl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~  529 (673)
                      |+.-++..+..|+..+++.++++ ++|+.|-..
T Consensus       492 G~~g~rV~~~~el~~al~~al~~-~~P~lIeV~  523 (548)
T PRK08978        492 GIPGQTITRKDQVEAALDTLLNS-EGPYLLHVS  523 (548)
T ss_pred             CCEEEEECCHHHHHHHHHHHHHC-CCCEEEEEE
T ss_conf             99799969999999999999818-996999999


No 73 
>PRK05858 hypothetical protein; Provisional
Probab=99.05  E-value=8.5e-10  Score=89.99  Aligned_cols=31  Identities=16%  Similarity=-0.020  Sum_probs=19.3

Q ss_pred             CCCEEEECCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             22112112012457777652025678349995
Q gi|254780655|r  497 DLLVLRPADSIETLECWQVALKEKNRPSVLSL  528 (673)
Q Consensus       497 nl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~  528 (673)
                      +..-++..+..|+..+++.|++. ++|++|-.
T Consensus       498 G~~g~~V~~~~eL~~al~~A~~~-~~P~lIeV  528 (543)
T PRK05858        498 GGHGELVAVPAELRPALERAFAS-GLPYVVNV  528 (543)
T ss_pred             CCEEEEECCHHHHHHHHHHHHHC-CCCEEEEE
T ss_conf             99799979999999999999838-99099999


No 74 
>PRK07064 hypothetical protein; Provisional
Probab=99.05  E-value=1.3e-09  Score=88.65  Aligned_cols=31  Identities=16%  Similarity=0.177  Sum_probs=19.8

Q ss_pred             CCCEEEECCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             22112112012457777652025678349995
Q gi|254780655|r  497 DLLVLRPADSIETLECWQVALKEKNRPSVLSL  528 (673)
Q Consensus       497 nl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~  528 (673)
                      +..-++-.+..|+..+++.|+.. +||++|-.
T Consensus       495 G~~g~rV~~~~eL~~al~~A~~~-~gP~vIeV  525 (544)
T PRK07064        495 GLPHWRVTSADDFEAVLREALAK-EGPVLVEV  525 (544)
T ss_pred             CCEEEEECCHHHHHHHHHHHHHC-CCCEEEEE
T ss_conf             99799979999999999999828-99589999


No 75 
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.04  E-value=7.1e-10  Score=90.54  Aligned_cols=121  Identities=14%  Similarity=0.121  Sum_probs=53.1

Q ss_pred             CCCCHHHCCCCCC-CH-HHHHHHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEE-CCCCCCCC---CC
Q ss_conf             4320010032576-20-02356787998728876220010--035553001245411110000130-24543333---33
Q gi|254780655|r  407 KSDFSGRYLHYGV-RE-HAMAAAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHV-LTHDSIGL---GE  478 (673)
Q Consensus       407 ~~~~p~r~i~~GI-aE-~~~~~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v-~th~gi~~---G~  478 (673)
                      +-..|.||+..|- .- ......|.|.++...-+|+++.-  ..|.- .-.-+..+.-.++|++++ +...+.+.   .+
T Consensus       409 ~~~~p~~~~~~~~~G~mG~glpaAiGA~lA~p~r~Vv~i~GDG~f~m-t~qEL~Ta~r~~lpv~ivV~NN~~yg~ir~~q  487 (574)
T PRK06466        409 KFNKPNRWINSGGLGTMGFGLPAAMGVKLAFPDQDVVCVTGEGSIQM-NIQELSTCLQYGLPVKIINLNNGALGMVRQWQ  487 (574)
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECHHHHHH-HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH
T ss_conf             66789842468888642333299999998589983899975069876-59999999995999589999799516999999


Q ss_pred             ----CCCH----HHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             ----3310----1000222101110122112112012457777652025678349995
Q gi|254780655|r  479 ----DGPT----HQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSL  528 (673)
Q Consensus       479 ----DGpT----Hq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~  528 (673)
                          +|..    -+..=|.+-+-.--|+.-++-.+..|+..+++.|+..+++|+.|=.
T Consensus       488 ~~~~~~~~~~~~~~~~pdf~~lA~a~G~~g~rv~~~~el~~al~~al~~~~~p~lIeV  545 (574)
T PRK06466        488 DMNYEGRHSHSYMESLPDFVKLAEAYGHVGIRITDLKDLKPKLEEAFAMKDRLVFIDI  545 (574)
T ss_pred             HHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             9752886665566899999999997798799979999999999999852599299999


No 76 
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.04  E-value=6.2e-10  Score=90.98  Aligned_cols=119  Identities=16%  Similarity=0.161  Sum_probs=56.0

Q ss_pred             CCCCHHHCCCCCCCHHHH---HHHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCCC----
Q ss_conf             432001003257620023---56787998728876220010--0355530012454111100001302-4543333----
Q gi|254780655|r  407 KSDFSGRYLHYGVREHAM---AAAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHVL-THDSIGL----  476 (673)
Q Consensus       407 ~~~~p~r~i~~GIaE~~~---~~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~~----  476 (673)
                      +-..|.+|+..|- =..|   ...|.|.++...-+|+++.-  ..|+ +.-..+-.+.-.++|++++. ...+.+.    
T Consensus       410 ~~~~~~~~~~~~~-~G~mG~glpaAiGA~lA~p~r~Vv~i~GDG~f~-m~~qEL~Ta~r~~lpv~ivV~NN~~yg~ir~~  487 (571)
T PRK07710        410 PLKTPDKWVTSGG-LGTMGFGLPAAIGAQIAKPDELVVAIVGDAGFQ-MTLQELSVLKEHSLPVKVFILNNEALGMVRQW  487 (571)
T ss_pred             CCCCCCEEEECCC-CCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHH-CCHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
T ss_conf             4678962420688-776566408999999738998389997780564-36999999999599938999978714899999


Q ss_pred             ---CCCCCH-HHHC---CCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             ---333310-1000---222101110122112112012457777652025678349995
Q gi|254780655|r  477 ---GEDGPT-HQPV---EHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSL  528 (673)
Q Consensus       477 ---G~DGpT-Hq~i---edia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~  528 (673)
                         ..++.. +..+   -|.+.+.---|+.-++-.++.|+..+++.|++. ++|+.|=.
T Consensus       488 q~~~~~~~~~~~~~~~~pdf~~~A~a~G~~g~~V~~~~el~~Al~~Al~~-~gP~lIeV  545 (571)
T PRK07710        488 QEEFYNQRYSHSLLSCQPDFVALAEAYGIKGVRIDDPLEAKEQLQHAITL-QEPVVIDC  545 (571)
T ss_pred             HHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHCC-CCCEEEEE
T ss_conf             99862887776667899999999997799899979999999999999818-99699999


No 77 
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.04  E-value=3e-09  Score=86.06  Aligned_cols=113  Identities=19%  Similarity=0.147  Sum_probs=60.5

Q ss_pred             CHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECCC--HHHHHHHHHHHH-HHHHHHCCCEEE----CCCCCCCCCCCCCH
Q ss_conf             00100325762002356787998728876220010--035553001245-411110000130----24543333333310
Q gi|254780655|r  410 FSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTF--MVFSDYSRPAIR-LASLMGIRVIHV----LTHDSIGLGEDGPT  482 (673)
Q Consensus       410 ~p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir-~~al~~~~v~~v----~th~gi~~G~DGpT  482 (673)
                      ++..|+-+|=.= |+.+++.|+|+...-+.|++.=  ..++-.+ ..+- .+.....+.+++    ..|++.+ |  =||
T Consensus       213 ~~~~F~~vG~MG-~as~ialG~al~~~~~~Vi~lDGDGs~LMh~-Gslati~~~~~~Nl~hivlnN~~h~SvG-g--QpT  287 (361)
T TIGR03297       213 HARDFLTVGSMG-HASQIALGLALARPDQRVVCLDGDGAALMHM-GGLATIGTQGPANLIHVLFNNGAHDSVG-G--QPT  287 (361)
T ss_pred             CCCCEEECCCCC-HHHHHHHHHHHHCCCCEEEEEECCHHHHHCC-CHHHHHHHCCCCCEEEEEEECCCCCCCC-C--CCC
T ss_conf             765357348851-4769999998628897089990868998544-0687887438874799998288432558-9--677


Q ss_pred             HHHCCCCCHHHHHCCC-CEEEECCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             1000222101110122-112112012457777652025678349995
Q gi|254780655|r  483 HQPVEHLAALRAIPDL-LVLRPADSIETLECWQVALKEKNRPSVLSL  528 (673)
Q Consensus       483 Hq~iedia~lr~iPnl-~v~~P~d~~E~~~~~~~al~~~~gP~~ir~  528 (673)
                      +-.--|+..+..--+. .++.=.+..|+..++..+++. +||+.|..
T Consensus       288 ~~~~idf~~iA~a~Gy~~~~~v~~~~~l~~~l~~~~~~-~Gp~fi~v  333 (361)
T TIGR03297       288 VSQHLDFAQIAKACGYAKVYEVSTLEELETALTAASSA-NGPRLIEV  333 (361)
T ss_pred             CCCCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHC-CCCEEEEE
T ss_conf             77787999999975997499977999999999999838-99989999


No 78 
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.04  E-value=7.3e-10  Score=90.45  Aligned_cols=152  Identities=16%  Similarity=0.133  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC-CCHH-HHHHHHHHHHHCCCCCCEECCC--HHH
Q ss_conf             88899886554332203455567400026663445432001003257-6200-2356787998728876220010--035
Q gi|254780655|r  372 LVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYG-VREH-AMAAAMNGIALHKGLAPYSGTF--MVF  447 (673)
Q Consensus       372 ~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~p~r~i~~G-IaE~-~~~~~aaGla~~~g~~p~~~tf--~~F  447 (673)
                      .++..+.+..|+=....+|..... . +  ...+++-..|.+|+..+ ..=- .....|.|.++...-++++++-  ..|
T Consensus       376 ~~~~~l~~~~p~d~iv~~d~G~~~-~-~--~~~~~~~~~p~~~~~~~g~G~mG~glpaAiGA~lA~pdr~Vv~i~GDG~f  451 (572)
T PRK06456        376 KILKTIRNSIPRDAIVTTGVGQHQ-M-W--AEVFWEVLEPRTFLSSTGMGTMGFGLPAAMGAKLARPDKVVVDLDGDGSF  451 (572)
T ss_pred             HHHHHHHHHCCCCCEEEECCCCCH-H-H--HHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCHHH
T ss_conf             999999985799987997886217-8-9--99974047987044067666656520899999983899829999875586


Q ss_pred             HHHHHHHHHHHHHHHCCCEEEC-CCCCCCC---CCC---C-C---HHH-HCCCCCHHHHHCCCCEEEECCHHHHHHHHHH
Q ss_conf             5530012454111100001302-4543333---333---3-1---010-0022210111012211211201245777765
Q gi|254780655|r  448 SDYSRPAIRLASLMGIRVIHVL-THDSIGL---GED---G-P---THQ-PVEHLAALRAIPDLLVLRPADSIETLECWQV  515 (673)
Q Consensus       448 ~~~~~~~ir~~al~~~~v~~v~-th~gi~~---G~D---G-p---THq-~iedia~lr~iPnl~v~~P~d~~E~~~~~~~  515 (673)
                      +- .-..+..+.-.++|++++. ...+.+.   .++   | .   ++- +.-|.+-+----|+.-++-.+..|+..+++.
T Consensus       452 ~m-~~qEL~Ta~r~~lpv~ivV~NN~~yg~ir~~q~~~~~~~~~~~~~~~~pdfa~iA~a~G~~g~~V~~~~el~~al~~  530 (572)
T PRK06456        452 LM-TGNNLATAVDEHIPIISVIFDNRTLGLVRQVQDLFFGRRIVGVDYGPSPDFVKLAEAFGALGFNATTYEEIEKSIKT  530 (572)
T ss_pred             HC-CHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHH
T ss_conf             30-39999999995899389999687037999999986288644576799999999999789979996999999999999


Q ss_pred             HHCCCCCCEEEEEC
Q ss_conf             20256783499952
Q gi|254780655|r  516 ALKEKNRPSVLSLS  529 (673)
Q Consensus       516 al~~~~gP~~ir~~  529 (673)
                      |++. ++|+.|-..
T Consensus       531 a~~~-~gP~lIeV~  543 (572)
T PRK06456        531 AIKE-NIPAVIRVP  543 (572)
T ss_pred             HHHC-CCCEEEEEE
T ss_conf             9828-996999999


No 79 
>PRK07524 hypothetical protein; Provisional
Probab=99.04  E-value=8.3e-10  Score=90.04  Aligned_cols=31  Identities=13%  Similarity=0.072  Sum_probs=15.0

Q ss_pred             CCEEEEECCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             72999952688999999999999739943998
Q gi|254780655|r  559 AQVTIFSSGSELKIAVEACEILSSRNISTRVV  590 (673)
Q Consensus       559 ~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi  590 (673)
                      +-+.|++=|+....+-+- ....++++.+.+|
T Consensus       427 ~vi~i~GDGsf~m~~~eL-~Ta~r~~lpi~ii  457 (534)
T PRK07524        427 PVVCLVGDGGLQFTLPEL-ASAVEADLPLVVL  457 (534)
T ss_pred             CEEEEECCHHHHHHHHHH-HHHHHHCCCCEEE
T ss_conf             789998726875419999-9999978591899


No 80 
>PRK08611 pyruvate oxidase; Provisional
Probab=99.04  E-value=8.6e-10  Score=89.93  Aligned_cols=152  Identities=11%  Similarity=0.005  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHH---HHHHHHHHHCCCCCCEECCC--H
Q ss_conf             788899886554332203455567400026663445432001003257620023---56787998728876220010--0
Q gi|254780655|r  371 ELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAM---AAAMNGIALHKGLAPYSGTF--M  445 (673)
Q Consensus       371 g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~p~r~i~~GIaE~~~---~~~aaGla~~~g~~p~~~tf--~  445 (673)
                      ..++..+.+..|+=....+|...++ ..   ...+++-..|.+|+--+- =..|   ...|.|.++...-+|+++.-  .
T Consensus       362 ~~~~~~l~~~lp~d~iv~~D~G~~~-~~---~~~~~~~~~~~~~~~s~~-~G~mG~glpaAiGA~lA~p~r~Vv~i~GDG  436 (576)
T PRK08611        362 ERVMASIQKFAKDDAVLSVDVGTVT-VW---SARYLNLTVNQKFIISSW-LGTMGCGLPGAIAAKIAFPNRQAIAICGDG  436 (576)
T ss_pred             HHHHHHHHHHCCCCCEEEEECCCHH-HH---HHHHCCCCCCCEECCCCC-CCCCCCCHHHHHHHHHHCCCCCEEEEECCH
T ss_conf             9999999986799987998276208-99---987501678862203788-777664069999999868999789998343


Q ss_pred             HHHHHHHHHHHHHHHHHCCCEEE-CCCCCCCCC-----CCCC----HHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHH
Q ss_conf             35553001245411110000130-245433333-----3331----0100022210111012211211201245777765
Q gi|254780655|r  446 VFSDYSRPAIRLASLMGIRVIHV-LTHDSIGLG-----EDGP----THQPVEHLAALRAIPDLLVLRPADSIETLECWQV  515 (673)
Q Consensus       446 ~F~~~~~~~ir~~al~~~~v~~v-~th~gi~~G-----~DGp----THq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~  515 (673)
                      .|+- .-.-+-.+.-.++|++++ +...+.+.-     ..|.    |.-+--|.+.+----++.-++-.++.|+..+++.
T Consensus       437 sf~m-t~qEL~Tavr~~lpv~ivV~NN~~yg~i~~~q~~~g~~~~~~~l~~~Df~~~A~a~G~~g~rV~~~~el~~Al~~  515 (576)
T PRK08611        437 GFSM-VMQDFVTAVKYKLPITVVVLNNQQLAFIKYEQQAAGELEYAIDLSDMDYAKFAEACGGKGYTVKSADELDPAFEE  515 (576)
T ss_pred             HHHH-HHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHH
T ss_conf             8766-599999999978897899996982189999999737987668489989999999779979997999999999999


Q ss_pred             HHCCCCCCEEEEEC
Q ss_conf             20256783499952
Q gi|254780655|r  516 ALKEKNRPSVLSLS  529 (673)
Q Consensus       516 al~~~~gP~~ir~~  529 (673)
                      |++. ++|+.|=..
T Consensus       516 Al~~-~~P~lIeV~  528 (576)
T PRK08611        516 ALAQ-DKPVIIDVY  528 (576)
T ss_pred             HHHC-CCCEEEEEE
T ss_conf             9828-997999998


No 81 
>PRK12474 hypothetical protein; Provisional
Probab=99.04  E-value=1.2e-09  Score=89.02  Aligned_cols=42  Identities=14%  Similarity=0.137  Sum_probs=21.1

Q ss_pred             CHHHHHHHCC-CCCCCCCCCCH-HHHHHHHHHHHHC-CCCHHHHH
Q ss_conf             1799886414-44444444406-7888888875110-22102220
Q gi|254780655|r  213 DQYARFRASG-WNTLSVNGHDH-HAITSTLRKAQLS-DKPTMIAC  254 (673)
Q Consensus       213 ~~~~~~~a~G-w~~~~vdG~d~-~~i~~a~~~ak~~-~kP~~I~~  254 (673)
                      |+...++.+- |.+..-+..++ +.+.+|++.|+.. ..|++|..
T Consensus       118 d~~~~~~~vtk~~~~v~~~~~i~~~v~~A~~~A~s~~~GPv~l~i  162 (518)
T PRK12474        118 DIDGFARPVSRWVHRSASAGAVDSDVARAVQAAQSAPGGIATLIM  162 (518)
T ss_pred             CHHHHHHHHEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf             499997644026899777666499999999998549999779996


No 82 
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.04  E-value=9.1e-10  Score=89.78  Aligned_cols=31  Identities=13%  Similarity=0.073  Sum_probs=21.8

Q ss_pred             CCCEEEECCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             22112112012457777652025678349995
Q gi|254780655|r  497 DLLVLRPADSIETLECWQVALKEKNRPSVLSL  528 (673)
Q Consensus       497 nl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~  528 (673)
                      |+.=++-.++.|+..+++.|++. ++|+.|=.
T Consensus       518 G~~g~rV~~~~el~~Al~~Al~~-~gP~lIeV  548 (588)
T CHL00099        518 GIKGITIKSRKDLKSKLQRALDY-DGPVLVDC  548 (588)
T ss_pred             CCEEEEECCHHHHHHHHHHHHCC-CCCEEEEE
T ss_conf             99899979999999999999829-99789999


No 83 
>PRK08322 acetolactate synthase; Reviewed
Probab=99.03  E-value=9.4e-10  Score=89.66  Aligned_cols=31  Identities=16%  Similarity=0.074  Sum_probs=17.7

Q ss_pred             CCCEEEECCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             22112112012457777652025678349995
Q gi|254780655|r  497 DLLVLRPADSIETLECWQVALKEKNRPSVLSL  528 (673)
Q Consensus       497 nl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~  528 (673)
                      |+.-++..+..|+..+++.|++. +||+.|-.
T Consensus       495 G~~~~~v~~~~el~~al~~a~~~-~gp~lIev  525 (547)
T PRK08322        495 GAKGYRVESADDLLPTLEEALAQ-PGVHVIDC  525 (547)
T ss_pred             CCEEEEECCHHHHHHHHHHHHHC-CCCEEEEE
T ss_conf             99799969999999999999828-99789999


No 84 
>PRK08199 acetolactate synthase 2 catalytic subunit; Validated
Probab=99.03  E-value=1.4e-09  Score=88.44  Aligned_cols=17  Identities=12%  Similarity=0.321  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHCC-CCHHH
Q ss_conf             888888751102-21022
Q gi|254780655|r  236 ITSTLRKAQLSD-KPTMI  252 (673)
Q Consensus       236 i~~a~~~ak~~~-kP~~I  252 (673)
                      +.+|++.|.... +|+.|
T Consensus       140 i~~A~~~A~~~~~GPV~l  157 (553)
T PRK08199        140 VARAFHVATSGRPGPVVL  157 (553)
T ss_pred             HHHHHHHHHCCCCCCEEE
T ss_conf             999999974289973899


No 85 
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.03  E-value=1.1e-09  Score=89.26  Aligned_cols=116  Identities=32%  Similarity=0.404  Sum_probs=88.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC----
Q ss_conf             8886314799999999999985342688767845999843621143445578876522022330699962763223----
Q gi|254780655|r  128 TTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISID----  203 (673)
Q Consensus       128 ~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~----  203 (673)
                      +-|++|-|+++|+|.++|..           |+.|+|++|||+++  +..--+.-|.+++|+-+++++||+.+..=    
T Consensus        46 g~g~MG~~lPaAiGA~lA~P-----------dr~Vv~i~GDG~f~--m~~~EL~Tavr~~lpv~~vV~NN~~yg~i~~~Q  112 (205)
T cd02003          46 GYSCMGYEIAAGLGAKLAKP-----------DREVYVLVGDGSYL--MLHSEIVTAVQEGLKIIIVLFDNHGFGCINNLQ  112 (205)
T ss_pred             CCHHHHHHHHHHHHHHHHCC-----------CCCEEEEECCCCCC--CCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH
T ss_conf             74068899999999998589-----------98289997674111--520489999982995469999899428999999


Q ss_pred             -----CCC---------------CCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCC
Q ss_conf             -----223---------------5567821799886414444444444067888888875110221022201334
Q gi|254780655|r  204 -----GPI---------------SLADSTDQYARFRASGWNTLSVNGHDHHAITSTLRKAQLSDKPTMIACETVI  258 (673)
Q Consensus       204 -----~~~---------------~~~~~~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T~k  258 (673)
                           .+.               ....+.|..+.-++||-..++|+  +.++|..|+++|.+.++|++|.+++-.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Df~~~A~a~G~~g~~V~--~~~eL~~Al~~Al~~~gP~vIev~vdP  185 (205)
T cd02003         113 ESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVK--TIEELKAALAKAKASDRTTVIVIKTDP  185 (205)
T ss_pred             HHHCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf             9744676331110145655556777789889999987497089938--889999999999968996999999379


No 86 
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.03  E-value=1.2e-09  Score=88.97  Aligned_cols=151  Identities=14%  Similarity=0.109  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHH---HHHHHHHHHCCCCCCEECCC--H
Q ss_conf             788899886554332203455567400026663445432001003257620023---56787998728876220010--0
Q gi|254780655|r  371 ELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAM---AAAMNGIALHKGLAPYSGTF--M  445 (673)
Q Consensus       371 g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~p~r~i~~GIaE~~~---~~~aaGla~~~g~~p~~~tf--~  445 (673)
                      ..++..+.+..|+-+ ..+|.... ...   ...+.+ +.|.+|+.-+-- ..|   ...|.|.++...-+++++.-  .
T Consensus       390 ~~v~~~l~~~~pd~i-v~~D~G~~-~~w---~~~~l~-~~p~~~i~s~g~-GsmG~glPaAiGA~lA~p~r~Vv~i~GDG  462 (615)
T PRK07418        390 QEVLLAVRDLAPDAY-YTTDVGQH-QMW---AAQFLR-NGPRRWISSAGL-GTMGFGMPAAMGVKVALPDEQVICIAGDA  462 (615)
T ss_pred             HHHHHHHHHHCCCCE-EEECCCCH-HHH---HHHHHH-CCCCCEECCCCC-CCHHHHHHHHHHHHHHCCCCCEEEEECCH
T ss_conf             999999997588877-99368621-688---998712-278712158787-63257889999999848999689998443


Q ss_pred             HHHHHHHHHHHHHHHHHCCCEEEC-CCCCCCC--------CCCCCHH----HHCCCCCHHHHHCCCCEEEECCHHHHHHH
Q ss_conf             355530012454111100001302-4543333--------3333101----00022210111012211211201245777
Q gi|254780655|r  446 VFSDYSRPAIRLASLMGIRVIHVL-THDSIGL--------GEDGPTH----QPVEHLAALRAIPDLLVLRPADSIETLEC  512 (673)
Q Consensus       446 ~F~~~~~~~ir~~al~~~~v~~v~-th~gi~~--------G~DGpTH----q~iedia~lr~iPnl~v~~P~d~~E~~~~  512 (673)
                      .|.- .-.-+-.+.-.++|++++. ...+.+.        ..+.-++    .+.-|.+.+----|+.=++-.+..|+..+
T Consensus       463 sf~m-t~qEL~Ta~r~~Lpv~ivV~NN~~~G~ir~~q~~~~~~~~~~~~~~~~~pDf~~lA~a~G~~g~rV~~~~eL~~A  541 (615)
T PRK07418        463 SFLM-NIQELGTLAQYGIPVKTVIINNGWQGMVRQWQESFYDERYSASNMLPGMPDFVKLAEAFGVKGMLISERDQLKDA  541 (615)
T ss_pred             HHHH-HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHH
T ss_conf             8766-499999999968996899997984479999999861887673457789999999999779979997999999999


Q ss_pred             HHHHHCCCCCCEEE--EECC
Q ss_conf             76520256783499--9524
Q gi|254780655|r  513 WQVALKEKNRPSVL--SLSR  530 (673)
Q Consensus       513 ~~~al~~~~gP~~i--r~~R  530 (673)
                      ++.|++. +||+.|  +..|
T Consensus       542 l~~Al~~-~gP~lidV~vd~  560 (615)
T PRK07418        542 IAEALAH-DGPVLIDVHVRR  560 (615)
T ss_pred             HHHHHHC-CCCEEEEEEECC
T ss_conf             9999808-997899999888


No 87 
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.02  E-value=1.2e-09  Score=89.01  Aligned_cols=73  Identities=18%  Similarity=0.152  Sum_probs=36.9

Q ss_pred             HHHHHHHHCCCEEEC-CCCCCCC---CC----CCCHHHH----CCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCC
Q ss_conf             454111100001302-4543333---33----3310100----0222101110122112112012457777652025678
Q gi|254780655|r  455 IRLASLMGIRVIHVL-THDSIGL---GE----DGPTHQP----VEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNR  522 (673)
Q Consensus       455 ir~~al~~~~v~~v~-th~gi~~---G~----DGpTHq~----iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~g  522 (673)
                      +..+.-.++|++++. ...+.+.   .+    .|...+.    .-|.+-+----++.-++=.+..|+..+++.|+..+++
T Consensus       458 L~Tavr~~lpv~ivV~NN~~yg~i~~~q~~~~~g~~~~~~~~~~pDf~~lA~a~G~~g~rV~~~~eL~~al~~Al~~~~~  537 (574)
T PRK06882        458 LSTAKQYDIPVVIVSLNNRFLGMVKQWQDLIYSGRHSQVYMNSLPDFAKLAEAYGHVGIQIDTPDELEEKLTQAFSIKDK  537 (574)
T ss_pred             HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCC
T ss_conf             99999968995899997985429999999860897675567899999999997899799979999999999999855799


Q ss_pred             CEEEE
Q ss_conf             34999
Q gi|254780655|r  523 PSVLS  527 (673)
Q Consensus       523 P~~ir  527 (673)
                      |+.|=
T Consensus       538 p~lid  542 (574)
T PRK06882        538 LVFVD  542 (574)
T ss_pred             CEEEE
T ss_conf             09999


No 88 
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.02  E-value=8.7e-10  Score=89.89  Aligned_cols=112  Identities=30%  Similarity=0.423  Sum_probs=85.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC----
Q ss_conf             8863147999999999999853426887678459998436211434455788765220223306999627632232----
Q gi|254780655|r  129 TGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDG----  204 (673)
Q Consensus       129 tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~----  204 (673)
                      .|++|.|++.|+|.++|..           |+.|+|++|||+++  +....+..|.+++++-+++++||+.+.+-.    
T Consensus        48 ~g~mG~~~paAiGa~lA~p-----------~r~vv~i~GDG~f~--m~~~eL~Ta~~~~lpv~iiV~NN~~~g~~~~~~~  114 (178)
T cd02002          48 GGGLGWGLPAAVGAALANP-----------DRKVVAIIGDGSFM--YTIQALWTAARYGLPVTVVILNNRGYGALRSFLK  114 (178)
T ss_pred             CCHHHHHHHHHHHHHHHCC-----------CCEEEEEECCCCCC--CCCHHHEEEHHHCCCEEEEEEECCCHHHHHHHHH
T ss_conf             8537679999999998598-----------98299997897311--5522210001417997999997983089999999


Q ss_pred             ------CC-------CCCC-CCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHC
Q ss_conf             ------23-------5567-821799886414444444444067888888875110221022201
Q gi|254780655|r  205 ------PI-------SLAD-STDQYARFRASGWNTLSVNGHDHHAITSTLRKAQLSDKPTMIACE  255 (673)
Q Consensus       205 ------~~-------~~~~-~~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak~~~kP~~I~~~  255 (673)
                            ..       .... ..|..+.-++||.+...|  .+.++|..|+++|.+.++|++|++.
T Consensus       115 ~~~~~~~~~~~~~~~~~~~p~~d~~~iA~a~G~~~~~v--~~~~el~~al~~a~~~~~p~vIev~  177 (178)
T cd02002         115 RVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERV--ETPEELDEALREALAEGGPALIEVV  177 (178)
T ss_pred             HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEE--CCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             97377777665555567789989999999839948997--8999999999999838996899998


No 89 
>PRK08617 acetolactate synthase; Reviewed
Probab=99.01  E-value=1.6e-09  Score=88.06  Aligned_cols=30  Identities=23%  Similarity=0.184  Sum_probs=14.8

Q ss_pred             CCCEEEECCHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             2211211201245777765202567834999
Q gi|254780655|r  497 DLLVLRPADSIETLECWQVALKEKNRPSVLS  527 (673)
Q Consensus       497 nl~v~~P~d~~E~~~~~~~al~~~~gP~~ir  527 (673)
                      ++.-++-.+..|+..++..|+++ +||++|-
T Consensus       503 G~~g~~V~~~~eL~~al~~A~~~-~gP~lIe  532 (552)
T PRK08617        503 GAKGLRVTSPDELEPVLKEALAT-DGPVVID  532 (552)
T ss_pred             CCEEEEECCHHHHHHHHHHHHHC-CCCEEEE
T ss_conf             99799979999999999999818-9958999


No 90 
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=99.01  E-value=1.1e-09  Score=89.27  Aligned_cols=30  Identities=7%  Similarity=0.155  Sum_probs=16.2

Q ss_pred             CCCEEEECCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             22112112012457777652025678349995
Q gi|254780655|r  497 DLLVLRPADSIETLECWQVALKEKNRPSVLSL  528 (673)
Q Consensus       497 nl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~  528 (673)
                      ++.-++=.++.|+..+++ ++.. ++|+.|-.
T Consensus       509 G~~~~rv~~~~eL~~aLe-a~~~-~~P~lIeV  538 (566)
T PRK07282        509 GIKHYKFDNPETLAQDLE-VITE-DVPMLIEV  538 (566)
T ss_pred             CCEEEEECCHHHHHHHHH-HHCC-CCCEEEEE
T ss_conf             987999899999999999-8778-99899999


No 91 
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.01  E-value=1.4e-09  Score=88.41  Aligned_cols=31  Identities=13%  Similarity=0.089  Sum_probs=19.9

Q ss_pred             CCCEEEECCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             22112112012457777652025678349995
Q gi|254780655|r  497 DLLVLRPADSIETLECWQVALKEKNRPSVLSL  528 (673)
Q Consensus       497 nl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~  528 (673)
                      ++.-++-.++.|+..+++.|+++ +||++|-.
T Consensus       530 G~~g~rV~~~~eL~~Al~~A~~~-~gP~lIeV  560 (581)
T PRK06112        530 GCDGVRVEDPASLAQALAAAEAA-PGPFLIEV  560 (581)
T ss_pred             CCEEEEECCHHHHHHHHHHHHHC-CCCEEEEE
T ss_conf             98699979999999999999848-99399999


No 92 
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.01  E-value=1.1e-09  Score=89.28  Aligned_cols=121  Identities=16%  Similarity=0.118  Sum_probs=54.4

Q ss_pred             CCCCCHHHCCCC-CCCH-HHHHHHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEECCCC-CCCC----
Q ss_conf             543200100325-7620-02356787998728876220010--0355530012454111100001302454-3333----
Q gi|254780655|r  406 SKSDFSGRYLHY-GVRE-HAMAAAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHVLTHD-SIGL----  476 (673)
Q Consensus       406 ~~~~~p~r~i~~-GIaE-~~~~~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v~th~-gi~~----  476 (673)
                      ++-..|.+|+.- |..- ......|.|.++...-+|+++.-  ..|+- .-..+-.+.-.++|++++.-.. +.+.    
T Consensus       399 ~~~~~p~~~~~~~~~G~mG~glpaAiGA~lA~p~r~Vv~i~GDG~f~m-~~qEL~Ta~r~~lpi~ivV~NN~~~g~i~~~  477 (562)
T PRK06048        399 FKYKKPRTFITSGGLGTMGYGFPAAIGAKVGRPDKTVIDIAGDGSFQM-NSQELATVVQNDIPVVSVILNNGYLGMVRQW  477 (562)
T ss_pred             HHCCCCCCEECCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCHHHHH-HHHHHHHHHHHCCCEEEEEEECCCCHHHHHH
T ss_conf             204688711127877676775089999998589995899986179766-5999999999787929999968840899999


Q ss_pred             ---CCCCCHHH----HCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             ---33331010----00222101110122112112012457777652025678349995
Q gi|254780655|r  477 ---GEDGPTHQ----PVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSL  528 (673)
Q Consensus       477 ---G~DGpTHq----~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~  528 (673)
                         ..++...+    +--|.+.+----++.-++..+..|+..+++.|++. ++|+.|-.
T Consensus       478 q~~~~~~~~~~~~~~~~~df~~lA~a~G~~g~rV~~~~el~~al~~al~~-~gP~lIeV  535 (562)
T PRK06048        478 QELFYDKRYSHTFIKGSVDFVKLAEAYGALGLRAEKPSEVRPAIEEAVES-GRPVVVDF  535 (562)
T ss_pred             HHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHC-CCCEEEEE
T ss_conf             99863887675577999999999997899799969999999999999818-99799999


No 93 
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=99.01  E-value=1.5e-09  Score=88.27  Aligned_cols=105  Identities=10%  Similarity=0.070  Sum_probs=48.8

Q ss_pred             HHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCCC--CCCCCHHHHCCCCCH--H----HHH-
Q ss_conf             87998728876220010--0355530012454111100001302-4543333--333310100022210--1----110-
Q gi|254780655|r  428 MNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHVL-THDSIGL--GEDGPTHQPVEHLAA--L----RAI-  495 (673)
Q Consensus       428 aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~~--G~DGpTHq~iedia~--l----r~i-  495 (673)
                      |.|.++...=+|+++.-  ..|+- .-.-+--+.-.++|++++. ...|.+.  ...|..+. ..|++.  +    +.+ 
T Consensus       413 AIGA~lA~P~r~Vv~i~GDG~f~m-~~~EL~Tavr~~lpi~~vV~NN~~yg~~r~~~~~~~~-~~~~~~~~~~~~a~a~g  490 (539)
T TIGR03393       413 AFGAQTACPNRRVILLIGDGSAQL-TIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQR-YNDIALWNWTHLPQALS  490 (539)
T ss_pred             HHHHHHHCCCCCEEEEECCHHHHH-HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCC-CCCCCCCCHHHHHHHCC
T ss_conf             999998398994899984058776-3999999998198968999978823899887447766-67788899789999769


Q ss_pred             --CCCCEEEECCHHHHHHHHHHHHCCCCCCEEEE--ECCCCCCC
Q ss_conf             --12211211201245777765202567834999--52444433
Q gi|254780655|r  496 --PDLLVLRPADSIETLECWQVALKEKNRPSVLS--LSRQNLPF  535 (673)
Q Consensus       496 --Pnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir--~~R~~~p~  535 (673)
                        ..+.-++-.|+.|+..+++.|+.. ++|+.|-  .++.++|.
T Consensus       491 ~~g~~~~~rV~~~~eL~~al~~a~~~-~~P~lIeV~v~~~~~pp  533 (539)
T TIGR03393       491 LDPQSECWRVSEAEQLADVLEKVAAH-ERLSLIEVVLPKADIPP  533 (539)
T ss_pred             CCCCCCEEEECCHHHHHHHHHHHHHC-CCCEEEEEECCCCCCCC
T ss_conf             98862248868999999999999867-99789999857455885


No 94 
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=98.99  E-value=2e-09  Score=87.32  Aligned_cols=113  Identities=25%  Similarity=0.349  Sum_probs=81.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC--
Q ss_conf             886314799999999999985342688767845999843621143445578876522022330699962763223223--
Q gi|254780655|r  129 TGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPI--  206 (673)
Q Consensus       129 tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~--  206 (673)
                      -|++|.|++.|+|.++|..           |++|+|++|||+++  |..-.+.-|..++|+.+++++||+.+.+....  
T Consensus        49 ~g~mG~~lpaAiGa~lA~p-----------~~~Vv~i~GDG~f~--m~~~El~Ta~r~~l~vi~vV~NN~~~~~~r~~~~  115 (183)
T cd02005          49 WGSIGYSVPAALGAALAAP-----------DRRVILLVGDGSFQ--MTVQELSTMIRYGLNPIIFLINNDGYTIERAIHG  115 (183)
T ss_pred             CCHHHHHHHHHHHHHHHCC-----------CCCEEEEECCHHHH--HHHHHHHHHHHHCCCEEEEEEECCCCCEEEEECC
T ss_conf             5037789999999999789-----------98479995673676--2088999999829981999998994325575126


Q ss_pred             -----CCCCCCCHHHHHHHCCC----CCCCCCCCCHHHHHHHHHHHH-HCCCCHHHHHCC
Q ss_conf             -----55678217998864144----444444440678888888751-102210222013
Q gi|254780655|r  207 -----SLADSTDQYARFRASGW----NTLSVNGHDHHAITSTLRKAQ-LSDKPTMIACET  256 (673)
Q Consensus       207 -----~~~~~~~~~~~~~a~Gw----~~~~vdG~d~~~i~~a~~~ak-~~~kP~~I~~~T  256 (673)
                           ......|..+..+++|-    ..++|  ++.++|..|+++|. ..++|++|.+.+
T Consensus       116 ~~~~~~~~~~~df~~~A~a~G~~~g~~g~rV--~~~~el~~al~~Al~~~~~P~liev~v  173 (183)
T cd02005         116 PEASYNDIANWNYTKLPEVFGGGGGGLSFRV--KTEGELDEALKDALFNRDKLSLIEVIL  173 (183)
T ss_pred             CCCCCCCCCCCCHHHHHHHHCCCCCCEEEEE--CCHHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf             8656576999999999999478668428997--899999999999997289829999974


No 95 
>PRK07586 hypothetical protein; Validated
Probab=98.99  E-value=1.9e-09  Score=87.49  Aligned_cols=26  Identities=8%  Similarity=0.101  Sum_probs=13.5

Q ss_pred             CCCCH-HHHHHHHHHHHHC-CCCHHHHH
Q ss_conf             44406-7888888875110-22102220
Q gi|254780655|r  229 NGHDH-HAITSTLRKAQLS-DKPTMIAC  254 (673)
Q Consensus       229 dG~d~-~~i~~a~~~ak~~-~kP~~I~~  254 (673)
                      +..++ +.+.+|++.|+.. ..|+.|..
T Consensus       131 ~~~~i~~~~~~A~~~A~s~~~GPv~l~l  158 (514)
T PRK07586        131 SAADVGADAAAAVAAARSAPGQVATLIL  158 (514)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf             8112599999999998537999625526


No 96 
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.99  E-value=1.6e-09  Score=88.06  Aligned_cols=30  Identities=17%  Similarity=0.093  Sum_probs=19.7

Q ss_pred             CCCEEEECCHHHHHHHHHHHHCC--CCCCEEE
Q ss_conf             22112112012457777652025--6783499
Q gi|254780655|r  497 DLLVLRPADSIETLECWQVALKE--KNRPSVL  526 (673)
Q Consensus       497 nl~v~~P~d~~E~~~~~~~al~~--~~gP~~i  526 (673)
                      ++.-++=.+++|+..+++.|++.  .++|+.|
T Consensus       512 G~~g~~v~~~~el~~al~~Al~~~~~~~p~li  543 (574)
T PRK07979        512 GHVGIQISHPDELESKLSEALEQVRNNRLVFV  543 (574)
T ss_pred             CCEEEEECCHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf             99799978999999999999842379981899


No 97 
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.97  E-value=1.9e-09  Score=87.42  Aligned_cols=121  Identities=16%  Similarity=0.106  Sum_probs=54.5

Q ss_pred             CCCCHHHCCCCC-CCH-HHHHHHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCCC---CC
Q ss_conf             432001003257-620-02356787998728876220010--0355530012454111100001302-4543333---33
Q gi|254780655|r  407 KSDFSGRYLHYG-VRE-HAMAAAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHVL-THDSIGL---GE  478 (673)
Q Consensus       407 ~~~~p~r~i~~G-IaE-~~~~~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~~---G~  478 (673)
                      +-..|.||+..| ..- ......|.|.++...-+|+++.-  ..|+- .-..|..+.-.++|++++. ...+.+.   .+
T Consensus       407 ~~~~p~~~~~~~~~g~mG~~lpaAiGa~lA~p~r~Vv~i~GDGsf~m-~~qEL~Tavr~~lpv~iiV~NN~~yg~i~~~q  485 (572)
T PRK08979        407 PFDKPRRWINSGGLGTMGFGLPAAMGVKMAMPDETVVCVTGDGSIQM-NIQELSTALQYDIPVKIINLNNRFLGMVKQWQ  485 (572)
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCHHHHH-HHHHHHHHHHHCCCCEEEEEECCCHHHHHHHH
T ss_conf             66688753368987532354089999998589996899988279877-79999999997889489999797005999999


Q ss_pred             C----CC---HH-HHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             3----31---01-000222101110122112112012457777652025678349995
Q gi|254780655|r  479 D----GP---TH-QPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSL  528 (673)
Q Consensus       479 D----Gp---TH-q~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~  528 (673)
                      +    |.   +. ...-|.+.+.---+..-++=.++.|+..+++.|+..+++|+.|=.
T Consensus       486 ~~~~~g~~~~~~~~~~pdf~~~A~a~G~~g~rV~~~~el~~Al~~Al~~~~~p~lieV  543 (572)
T PRK08979        486 DMIYSGRHSHSYMDSVPDFAKIAEAYGHVGMTISDPAELESGLAKALAMKDRLVFVDI  543 (572)
T ss_pred             HHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             9860886676677899999999997799899979999999999999857698399999


No 98 
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=98.97  E-value=2.9e-09  Score=86.13  Aligned_cols=38  Identities=8%  Similarity=-0.034  Sum_probs=22.3

Q ss_pred             CCCEEEECCHHHHHHHHHHHHCC---CCCCEEE--EECCCCCC
Q ss_conf             22112112012457777652025---6783499--95244443
Q gi|254780655|r  497 DLLVLRPADSIETLECWQVALKE---KNRPSVL--SLSRQNLP  534 (673)
Q Consensus       497 nl~v~~P~d~~E~~~~~~~al~~---~~gP~~i--r~~R~~~p  534 (673)
                      |+.-++-.++.|+..+++.|++.   .++|+.|  +..+...|
T Consensus       526 G~~g~rV~~~~el~~al~~Al~~~~~~g~P~lidv~~d~~~~~  568 (589)
T PRK07525        526 GAEGVVVDTQEELGPALKRAIDAQMNEGKTTVIEVMCNQELGE  568 (589)
T ss_pred             CCEEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEEEECHHHCC
T ss_conf             9879998999999999999997333589948999996822147


No 99 
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=98.96  E-value=3.1e-09  Score=85.93  Aligned_cols=117  Identities=21%  Similarity=0.206  Sum_probs=85.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC---
Q ss_conf             68886314799999999999985342688767845999843621143445578876522022330699962763223---
Q gi|254780655|r  127 ATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISID---  203 (673)
Q Consensus       127 ~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~---  203 (673)
                      .+-|++|.|++.|+|.++|..           |+.|+|++|||+++  +....+.-|..++|+-+++++||..+..-   
T Consensus        50 ~~~g~mG~glpaAiGAk~A~P-----------dr~Vv~i~GDGsf~--m~~~EL~Ta~r~~lpv~~vV~NN~~~g~i~~~  116 (196)
T cd02013          50 LSFGNCGYALPAIIGAKAAAP-----------DRPVVAIAGDGAWG--MSMMEIMTAVRHKLPVTAVVFRNRQWGAEKKN  116 (196)
T ss_pred             CCCCHHHHHHHHHHHHHHHCC-----------CCEEEEEECCCCHH--HCHHHHHHHHHHCCCEEEEEEECCHHHHHHHH
T ss_conf             986647679999999997278-----------97499995797342--14489999999788906999978057899999


Q ss_pred             ------CCC--CCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH---HCCCCHHHHHCCCC
Q ss_conf             ------223--55678217998864144444444440678888888751---10221022201334
Q gi|254780655|r  204 ------GPI--SLADSTDQYARFRASGWNTLSVNGHDHHAITSTLRKAQ---LSDKPTMIACETVI  258 (673)
Q Consensus       204 ------~~~--~~~~~~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak---~~~kP~~I~~~T~k  258 (673)
                            +..  ......|..+..++||-..++|+  +.++|..|+++|.   .+++|++|.+.+-.
T Consensus       117 q~~~~~~~~~~~~~~~~df~~~A~a~G~~g~~V~--~~~el~~al~~Ala~~~~~~P~lIeV~vD~  180 (196)
T cd02013         117 QVDFYNNRFVGTELESESFAKIAEACGAKGITVD--KPEDVGPALQKAIAMMAEGKTTVIEIVCDQ  180 (196)
T ss_pred             HHHHHCCCCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf             9987089742453699986899997598789978--999999999999985679986999999786


No 100
>PRK06154 hypothetical protein; Provisional
Probab=98.95  E-value=3e-09  Score=85.97  Aligned_cols=18  Identities=6%  Similarity=0.139  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHC-CCCHHHH
Q ss_conf             88888875110-2210222
Q gi|254780655|r  236 ITSTLRKAQLS-DKPTMIA  253 (673)
Q Consensus       236 i~~a~~~ak~~-~kP~~I~  253 (673)
                      +.+|++.|... ..|++|.
T Consensus       146 l~~A~~~a~~~~~GPV~l~  164 (556)
T PRK06154        146 MRRAYTGLRNGRRGPVALE  164 (556)
T ss_pred             HHHHHHHHHHCCCCCEEEE
T ss_conf             9999999985799708997


No 101
>PRK06163 hypothetical protein; Provisional
Probab=98.95  E-value=5.5e-09  Score=84.13  Aligned_cols=114  Identities=22%  Similarity=0.292  Sum_probs=89.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
Q ss_conf             06888631479999999999998534268876784599984362114344557887652202233069996276322322
Q gi|254780655|r  126 EATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGP  205 (673)
Q Consensus       126 ~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~  205 (673)
                      -+.-|++|++.++|.|+|++..           +++|+|+-|||++.  |..-+|..++.+++.||++|+-||+.=  +.
T Consensus        53 Fy~vGsMG~as~iaLG~Ala~p-----------~k~Vi~iDGDGs~L--M~mGsLaTi~~~~p~Nl~hIvlnN~~~--~s  117 (202)
T PRK06163         53 FYMLGSMGLAFPIALGVALAQP-----------KRRVIALEGDGSLL--MQLGALGTIAALAPKNLTIIVMDNGVY--QI  117 (202)
T ss_pred             EEEECCCCCHHHHHHHHHHHCC-----------CCEEEEEECCHHHH--HCHHHHHHHHHHCCCCEEEEEECCCCC--CC
T ss_conf             6775221018899999998789-----------98289994766887--356889999971788569999869640--01


Q ss_pred             CCCC-----CCCCHHHHHHHCCCC-CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf             3556-----782179988641444-44444440678888888751102210222013
Q gi|254780655|r  206 ISLA-----DSTDQYARFRASGWN-TLSVNGHDHHAITSTLRKAQLSDKPTMIACET  256 (673)
Q Consensus       206 ~~~~-----~~~~~~~~~~a~Gw~-~~~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T  256 (673)
                      +..+     ...|+.+.-+++||. +..|  ++.+++.++++++.+.++|++|+++.
T Consensus       118 tGgQ~T~~~~~vDf~~iA~a~Gy~~~~~v--~~~~el~~~l~~~l~~~GP~fi~Vki  172 (202)
T PRK06163        118 TGGQPTLTSQTVDVVAIARGAGLENSHWA--ADEAHFEALVDQALSGPGPSFIAVRI  172 (202)
T ss_pred             CCCCCCCCCCCCCHHHHHHHCCCCCEEEE--CCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             68745776788799999997799857997--79999999999998389989999993


No 102
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=98.94  E-value=3.3e-09  Score=85.70  Aligned_cols=33  Identities=12%  Similarity=0.087  Sum_probs=14.5

Q ss_pred             CCCEEEEECCHHHHHHHHH-HHHHHHCCCCEEEE
Q ss_conf             9729999526889999999-99999739943998
Q gi|254780655|r  558 NAQVTIFSSGSELKIAVEA-CEILSSRNISTRVV  590 (673)
Q Consensus       558 ~~dv~iia~G~~v~~al~a-a~~L~~~Gi~~~Vi  590 (673)
                      .+-|.|++=|+......+. -....++++.+.+|
T Consensus       449 r~Vv~i~GDGsf~m~~~e~~l~ta~r~~lpi~iv  482 (568)
T PRK08327        449 RTVIATVGDGSFIFGVPTACYYVAERYGLPIVVI  482 (568)
T ss_pred             CEEEEEECCCHHHHCCHHHHHHHHHHHCCCEEEE
T ss_conf             8299998461776476589999999978394999


No 103
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=98.93  E-value=4.1e-09  Score=85.04  Aligned_cols=116  Identities=16%  Similarity=0.110  Sum_probs=54.3

Q ss_pred             CHHHCCCCCC---CHHHHHHHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCCCC------
Q ss_conf             0010032576---2002356787998728876220010--0355530012454111100001302-45433333------
Q gi|254780655|r  410 FSGRYLHYGV---REHAMAAAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHVL-THDSIGLG------  477 (673)
Q Consensus       410 ~p~r~i~~GI---aE~~~~~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~~G------  477 (673)
                      .|.+++..|.   .-.. ...|.|.++..+ +|+++.-  ..|+- .-.-+..+.-.++|++++. ...|+..+      
T Consensus       416 ~p~~~~~~g~~g~mG~g-lp~AigA~l~~~-r~Vv~i~GDGsf~m-~~~EL~Ta~r~~lpviivV~NN~g~~~~~~~~~~  492 (572)
T PRK09259        416 KPRKRLDTGTWGVMGIG-MGYAIAAAVETG-KPVVAIEGDSAFGF-SGMEIETICRYNLPVTVVIFNNGGIYRGDGVDPS  492 (572)
T ss_pred             CCCCEECCCCCCCCCCC-HHHHHHHHHCCC-CCEEEEECCCCCCC-CHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHC
T ss_conf             78716036876556655-799998644689-95899975841257-7899999998299918999938389999999860


Q ss_pred             --CC-CCHH-HHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf             --33-3101-0002221011101221121120124577776520256783499952
Q gi|254780655|r  478 --ED-GPTH-QPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLS  529 (673)
Q Consensus       478 --~D-GpTH-q~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~  529 (673)
                        .+ +++= .+--|.+.+----|+.=++..+..|+..+++.|+++ ++|+.|-..
T Consensus       493 ~~~~~~~~~~~~~~df~~lA~a~G~~g~~V~~~~eL~~Al~~A~~~-~~P~lIeV~  547 (572)
T PRK09259        493 GAGDPAPTVLVHHARYDKMMEAFGGVGYNVTTPDELRHALTEAIAS-GKPTLINAV  547 (572)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHC-CCCEEEEEE
T ss_conf             5887774124789999999996899799979999999999999838-994899998


No 104
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=98.90  E-value=4.9e-09  Score=84.48  Aligned_cols=101  Identities=16%  Similarity=0.117  Sum_probs=47.0

Q ss_pred             HHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCCCC-------CC-CCHHH-HCCCCCHHH
Q ss_conf             6787998728876220010--0355530012454111100001302-45433333-------33-31010-002221011
Q gi|254780655|r  426 AAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHVL-THDSIGLG-------ED-GPTHQ-PVEHLAALR  493 (673)
Q Consensus       426 ~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~~G-------~D-GpTHq-~iedia~lr  493 (673)
                      ..+.|.++..+ +|+++.-  ..|.- .-..+..+.-.++|++++. ..+|+..+       .+ +++.. +--|.+-+-
T Consensus       424 p~aigAa~~~~-~~Vv~i~GDGsf~m-~~~EL~Ta~r~~lpi~ivV~NN~g~~~~~~~~~~~~~~~~~~~~~~~df~~lA  501 (554)
T TIGR03254       424 GYAIAAAVETG-KPVVALEGDSAFGF-SGMEVETICRYNLPVCVVIFNNGGIYRGDDVNVVGADPAPTVLVHGARYDKMM  501 (554)
T ss_pred             HHHHHHHHCCC-CEEEEEECCCCCCC-CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
T ss_conf             99998642799-81899975851030-48999999996899589998780899999987428987754467899999999


Q ss_pred             HHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf             101221121120124577776520256783499952
Q gi|254780655|r  494 AIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLS  529 (673)
Q Consensus       494 ~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~  529 (673)
                      ---|+.-++..+..|+..+++.|++. ++|+.|-..
T Consensus       502 ~a~G~~g~~V~~~~eL~~al~~Al~~-~~p~lIeV~  536 (554)
T TIGR03254       502 KAFGGVGYNVTTPDELKAALNEALAS-GKPTLINAV  536 (554)
T ss_pred             HHCCCEEEEECCHHHHHHHHHHHHHC-CCEEEEEEE
T ss_conf             87899899979999999999999827-990999998


No 105
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.90  E-value=3.7e-09  Score=85.37  Aligned_cols=150  Identities=17%  Similarity=0.154  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHH--HHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHH---HHHHHHHHHCCCCCCEECCC
Q ss_conf             67888998865543--32203455567400026663445432001003257620023---56787998728876220010
Q gi|254780655|r  370 SELVLEVVNDCLPE--LIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAM---AAAMNGIALHKGLAPYSGTF  444 (673)
Q Consensus       370 ~g~~l~~i~~~~p~--iv~~sADl~~St~~~~~~~~~~~~~~~p~r~i~~GIaE~~~---~~~aaGla~~~g~~p~~~tf  444 (673)
                      ...++..+.+..|+  +++  .|.. ++...   ...+++-..|++++..|-- .+|   ...|.|.++...=++++++-
T Consensus       361 p~~v~~~l~~~~~~daiv~--~d~G-~~~~w---~~~~~~~~~p~~~~~s~~~-GtMG~glPaAIGAkla~P~r~Vv~i~  433 (550)
T COG0028         361 PQYVIKVLRELLPDDAIVV--TDVG-QHQMW---AARYFDFYRPRRFLTSGGL-GTMGFGLPAAIGAKLAAPDRKVVAIA  433 (550)
T ss_pred             HHHHHHHHHHHCCCCEEEE--ECCC-HHHHH---HHHHCCCCCCCCEEECCCC-CCCCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf             8999999998669987999--7872-86899---9984555788715657998-61112489999988638998289997


Q ss_pred             --HHHHHHHHHHHHHHHHHHCCCEEECCCCC-CCCC-------CCCC-HHHHCCCC---CHHHHHCCCCEEEECCHHHHH
Q ss_conf             --03555300124541111000013024543-3333-------3331-01000222---101110122112112012457
Q gi|254780655|r  445 --MVFSDYSRPAIRLASLMGIRVIHVLTHDS-IGLG-------EDGP-THQPVEHL---AALRAIPDLLVLRPADSIETL  510 (673)
Q Consensus       445 --~~F~~~~~~~ir~~al~~~~v~~v~th~g-i~~G-------~DGp-THq~iedi---a~lr~iPnl~v~~P~d~~E~~  510 (673)
                        ..|+- .-.-+--+...++|++++.-..| ++.-       .++. ++.-+...   .+-++ -+...++-.++.|+.
T Consensus       434 GDG~F~m-~~qEL~Ta~r~~lpv~ivv~nN~~~g~v~~~q~~~~~~~~~~~~~~~~~f~klAea-~G~~g~rv~~~~el~  511 (550)
T COG0028         434 GDGGFMM-NGQELETAVRYGLPVKIVVLNNGGYGMVRQWQELFYGGRYSGTDLGNPDFVKLAEA-YGAKGIRVETPEELE  511 (550)
T ss_pred             CCCHHHC-CHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH-CCCEEEEECCHHHHH
T ss_conf             0236850-79899999986899799999784434508998873477855111588768999997-798259968889999


Q ss_pred             HHHHHHHCCCCCCEEEEEC
Q ss_conf             7776520256783499952
Q gi|254780655|r  511 ECWQVALKEKNRPSVLSLS  529 (673)
Q Consensus       511 ~~~~~al~~~~gP~~ir~~  529 (673)
                      .+++.|++. ++|+.|-..
T Consensus       512 ~al~~al~~-~~p~lidv~  529 (550)
T COG0028         512 EALEEALAS-DGPVLIDVV  529 (550)
T ss_pred             HHHHHHHHC-CCCEEEEEE
T ss_conf             999999707-998899998


No 106
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=98.89  E-value=8.9e-09  Score=82.61  Aligned_cols=17  Identities=41%  Similarity=0.593  Sum_probs=8.3

Q ss_pred             CCCCCCCCCCHHHHHHHHH
Q ss_conf             8730688863147999999
Q gi|254780655|r  123 AGIEATTGPLGQGIANAVG  141 (673)
Q Consensus       123 ~~v~~~tG~lG~gis~a~G  141 (673)
                      |||-+.|  .|-|+.+++.
T Consensus        64 ~gv~~~t--~GPG~tN~~t   80 (535)
T TIGR03394        64 LGVAAVT--YGAGAFNMVN   80 (535)
T ss_pred             CEEEEEC--CCHHHHHHHH
T ss_conf             8999966--5778999999


No 107
>PRK08273 pyruvate decarboxylase; Provisional
Probab=98.89  E-value=6.8e-09  Score=83.45  Aligned_cols=164  Identities=16%  Similarity=0.108  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCC-CCCCHH-HHHHHHHHHHHCCCCCCEECC-----
Q ss_conf             7888998865543322034555674000266634454320010032-576200-235678799872887622001-----
Q gi|254780655|r  371 ELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLH-YGVREH-AMAAAMNGIALHKGLAPYSGT-----  443 (673)
Q Consensus       371 g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~p~r~i~-~GIaE~-~~~~~aaGla~~~g~~p~~~t-----  443 (673)
                      ..++..+.+.+|+=-...+|...++ ...   ..+++-..+.+++- -|.+-- .....|.|.++...-+|+++.     
T Consensus       369 ~~v~~~l~~~lp~daIv~~D~G~~~-~w~---~r~l~~~~~~~~~~sg~~gsMG~glPaAIGA~lA~P~r~Vv~i~GDG~  444 (597)
T PRK08273        369 QRVFWELSPRLPDNAILTADSGSCA-NWY---ARDLRMRRGMMASLSGGLATMGPAVPYAIAAKFAHPDRPVIALVGDGA  444 (597)
T ss_pred             HHHHHHHHHHCCCCCEEEECCCCHH-HHH---HHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCH
T ss_conf             9999999985898738995686308-999---988247899737746876664507899999998589995899981615


Q ss_pred             CHHH-HHHHHHHHHH-HHHHHCCCEEE-CCCCCCCC---------CCC-CCHHH--HCCCCCHHHHHCCCCEEEECCHHH
Q ss_conf             0035-5530012454-11110000130-24543333---------333-31010--002221011101221121120124
Q gi|254780655|r  444 FMVF-SDYSRPAIRL-ASLMGIRVIHV-LTHDSIGL---------GED-GPTHQ--PVEHLAALRAIPDLLVLRPADSIE  508 (673)
Q Consensus       444 f~~F-~~~~~~~ir~-~al~~~~v~~v-~th~gi~~---------G~D-GpTHq--~iedia~lr~iPnl~v~~P~d~~E  508 (673)
                      |.++ ++-..-..|. -..+++|++++ +...+++.         |.. -.+-+  +-.|.+.+----++.-++-.++.|
T Consensus       445 f~M~~~~EL~Ta~ry~~~~~~lpvvvvV~NN~~~g~i~~~q~~~~g~~~~~~~~~lp~~d~a~~A~a~G~~g~rV~~~~e  524 (597)
T PRK08273        445 MQMNGMAELITVAKYWRQWADPRLIVLVLNNRDLNQVTWEQRVMEGDPKFEASQQLPDVPYARFAELLGLKGIRVDDPEQ  524 (597)
T ss_pred             HHHCHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHH
T ss_conf             76350889999999764014899799998185157999999984588776764568999999999978997999899999


Q ss_pred             HHHHHHHHHCCCCCCEEEEECC-CCCCCCCCC
Q ss_conf             5777765202567834999524-444334566
Q gi|254780655|r  509 TLECWQVALKEKNRPSVLSLSR-QNLPFLRTQ  539 (673)
Q Consensus       509 ~~~~~~~al~~~~gP~~ir~~R-~~~p~~~~~  539 (673)
                      +..+|+.|++. ++|+.|=..- .++|.++..
T Consensus       525 l~~Al~~Al~~-~~P~lIeV~~Dp~~~p~pp~  555 (597)
T PRK08273        525 LGAAWDEALAA-DRPVVLEVKTDPNVPPLPPH  555 (597)
T ss_pred             HHHHHHHHHHC-CCCEEEEEECCCCCCCCCCC
T ss_conf             99999999848-99789999718999999996


No 108
>PRK11269 glyoxylate carboligase; Provisional
Probab=98.87  E-value=1.1e-08  Score=81.96  Aligned_cols=149  Identities=15%  Similarity=0.168  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHH---HHHHHHHHCCCCCCEECCC--HH
Q ss_conf             888998865543322034555674000266634454320010032576200235---6787998728876220010--03
Q gi|254780655|r  372 LVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAMA---AAMNGIALHKGLAPYSGTF--MV  446 (673)
Q Consensus       372 ~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~p~r~i~~GIaE~~~~---~~aaGla~~~g~~p~~~tf--~~  446 (673)
                      .++..+.+..|+=.....|...+. .   -...+++-..|.+++..|-. ..|+   ..|.|.++...-+|+++.-  ..
T Consensus       374 ~v~~~l~~~~~~d~iiv~d~G~~~-~---~~~~~~~~~~p~~~~~~g~~-G~mG~glPaAIGA~lA~Pdr~VV~i~GDG~  448 (591)
T PRK11269        374 RVYEEMNKAFGRDTCYVSTIGLSQ-I---AAAQFLHVYKPRHWINCGQA-GPLGWTIPAALGVRAADPERPVVALSGDYD  448 (591)
T ss_pred             HHHHHHHHHCCCCCEEEECCCHHH-H---HHHHHCCCCCCCCEECCCCC-CHHHHHHHHHHHHHHHCCCCCEEEEECCHH
T ss_conf             999999976799888998060779-9---99985335799877367665-558999999999999789996899987368


Q ss_pred             HHHHHHHHHHHHHHHHCCCEEEC-CCCCCCC----------------CCCCCHHH-----HCCCCCHHHHHCCCCEEEEC
Q ss_conf             55530012454111100001302-4543333----------------33331010-----00222101110122112112
Q gi|254780655|r  447 FSDYSRPAIRLASLMGIRVIHVL-THDSIGL----------------GEDGPTHQ-----PVEHLAALRAIPDLLVLRPA  504 (673)
Q Consensus       447 F~~~~~~~ir~~al~~~~v~~v~-th~gi~~----------------G~DGpTHq-----~iedia~lr~iPnl~v~~P~  504 (673)
                      |+ +.-.-+-.++-.++|++++. ..++++.                +.+++...     +++-.++-+++ |+.=++=.
T Consensus       449 f~-m~~qEL~Tavr~~lpvv~vV~NN~~~G~Ir~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~Df~~~Aea~-G~~g~rV~  526 (591)
T PRK11269        449 FQ-FLIEELAVGAQFNLPYIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSPELNGYGVDHVKVAEGL-GCKAIRVF  526 (591)
T ss_pred             HH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHC-CCEEEEEC
T ss_conf             75-41999999999588908999968823099999997445644220557778865567888899999977-98799989


Q ss_pred             CHHHHHHHHHHHHC---CCCCCEEEE
Q ss_conf             01245777765202---567834999
Q gi|254780655|r  505 DSIETLECWQVALK---EKNRPSVLS  527 (673)
Q Consensus       505 d~~E~~~~~~~al~---~~~gP~~ir  527 (673)
                      ++.|+..+|+.|+.   ..++|+.|=
T Consensus       527 ~~~el~~Al~~Ala~~~~~~~P~lv~  552 (591)
T PRK11269        527 KPEDIAPAFEQAKALMAEFRVPVVVE  552 (591)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf             99999999999974113579988999


No 109
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=98.87  E-value=1.1e-08  Score=81.91  Aligned_cols=114  Identities=18%  Similarity=0.279  Sum_probs=82.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC---
Q ss_conf             88863147999999999999853426887678459998436211434455788765220223306999627632232---
Q gi|254780655|r  128 TTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDG---  204 (673)
Q Consensus       128 ~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~---  204 (673)
                      +.|++|-|++.|+|.++|..           |+.|+|++|||+++  +..--+.-|.+++|+-+++++||+.+.+-.   
T Consensus        55 ~~g~mG~glPaAiGaklA~P-----------dr~Vv~i~GDGsf~--m~~~EL~Ta~r~~lpii~vV~NN~~~g~ir~~q  121 (202)
T cd02006          55 QAGPLGWTVPAALGVAAADP-----------DRQVVALSGDYDFQ--FMIEELAVGAQHRIPYIHVLVNNAYLGLIRQAQ  121 (202)
T ss_pred             CCCHHHHHHHHHHHHHHHCC-----------CCEEEEEECCCCHH--HHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHH
T ss_conf             98703318999999998769-----------98599997684055--129999999996998399999795568999999


Q ss_pred             -------CCC-----------CCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH----CCCCHHHHHCC
Q ss_conf             -------235-----------56782179988641444444444406788888887511----02210222013
Q gi|254780655|r  205 -------PIS-----------LADSTDQYARFRASGWNTLSVNGHDHHAITSTLRKAQL----SDKPTMIACET  256 (673)
Q Consensus       205 -------~~~-----------~~~~~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak~----~~kP~~I~~~T  256 (673)
                             ...           .....|..+.-+++|...++|+  +.++|..||++|.+    .++|++|.+.+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~kiAea~G~~g~rV~--~~~eL~~Al~~A~~~~~~~~~P~lIevii  193 (202)
T cd02006         122 RAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVT--KPEELAAAFEQAKKLMAEHRVPVVVEAIL  193 (202)
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf             9853474423254666885446789899999997899899979--99999999999998751479978999997


No 110
>PRK07449 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; Validated
Probab=98.87  E-value=1e-08  Score=82.09  Aligned_cols=31  Identities=26%  Similarity=0.237  Sum_probs=16.5

Q ss_pred             CCCEEEECCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             22112112012457777652025678349995
Q gi|254780655|r  497 DLLVLRPADSIETLECWQVALKEKNRPSVLSL  528 (673)
Q Consensus       497 nl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~  528 (673)
                      |+.-++..++.|+..+++.++.. +||+.|-.
T Consensus       496 G~~~~~v~~~~eL~~al~~a~~~-~gP~lIeV  526 (548)
T PRK07449        496 GLEYHRPETWAELEEALDDALRT-PGLTVIEV  526 (548)
T ss_pred             CCEEEEECCHHHHHHHHHHHHHC-CCCEEEEE
T ss_conf             99399859999999999999838-99889999


No 111
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=98.84  E-value=8.7e-08  Score=75.43  Aligned_cols=63  Identities=11%  Similarity=0.105  Sum_probs=55.2

Q ss_pred             CCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCCCCCEEEEECC
Q ss_conf             699729999526889999999999997399439985746581000868899964367977999728
Q gi|254780655|r  556 TPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIEA  621 (673)
Q Consensus       556 ~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE~  621 (673)
                      .++.|++||+.|+....+.+|.+.|+++|+++.++.++++.||-.   +.+.+++.+.+.++.+|-
T Consensus       259 ~eDAe~viV~~GS~~~~~k~AVd~lR~~G~KVGllr~r~~rPFP~---e~l~~~~k~~k~V~Vldr  321 (395)
T PRK08367        259 TEDAEIIFVTMGSLAGTLKEWVDKKREEGYKVGAAKITVYRPFPV---EEIRELAKKAKVLAFLEK  321 (395)
T ss_pred             CCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCH---HHHHHHHCCCCEEEEEEC
T ss_conf             999889999817428999999999997498576899888589999---999998657988999868


No 112
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=98.83  E-value=1.4e-08  Score=81.22  Aligned_cols=114  Identities=25%  Similarity=0.290  Sum_probs=83.9

Q ss_pred             CCCCCCHH--HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
Q ss_conf             68886314--7999999999999853426887678459998436211434455788765220223306999627632232
Q gi|254780655|r  127 ATTGPLGQ--GIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDG  204 (673)
Q Consensus       127 ~~tG~lG~--gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~  204 (673)
                      ..-|-.|.  ++|.|+|.|+|.            +..|+|++|||+++  +..-+|..+..++++-.|+++||++..|=.
T Consensus        46 ~NRG~sGIdg~lstAiGaa~a~------------~~pvv~i~GDgsf~--~d~~eL~t~~~~~~pv~ivV~NN~GggIf~  111 (175)
T cd02009          46 ANRGASGIDGTLSTALGIALAT------------DKPTVLLTGDLSFL--HDLNGLLLGKQEPLNLTIVVINNNGGGIFS  111 (175)
T ss_pred             ECCCCCCCCCHHHHHHHHHHCC------------CCCEEEEEECHHHH--CCHHHHHHHHHCCCCEEEEEEECCCCHHHH
T ss_conf             4688535220899999999658------------99889997026866--167899999866998299999489833999


Q ss_pred             ---------CCCCCCC----CCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf             ---------2355678----217998864144444444440678888888751102210222013
Q gi|254780655|r  205 ---------PISLADS----TDQYARFRASGWNTLSVNGHDHHAITSTLRKAQLSDKPTMIACET  256 (673)
Q Consensus       205 ---------~~~~~~~----~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T  256 (673)
                               ..+..+.    .|..+.-++|||.+.+|+  +.+++.++++++...++|++|+++|
T Consensus       112 ~l~~~~~~~~~~~~~~tp~~~df~~lA~a~G~~~~~v~--~~~el~~al~~~~~~~gp~lIEV~t  174 (175)
T cd02009         112 LLPQASFEDEFERLFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESALAQDGPHVIEVKT  174 (175)
T ss_pred             HHHHHHCCCCCCEEECCCCCCCHHHHHHHCCCCEEEEC--CHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             98775036864312157776689999998699779849--9999999999998389989999968


No 113
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=98.78  E-value=3.6e-08  Score=78.21  Aligned_cols=115  Identities=24%  Similarity=0.364  Sum_probs=82.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC-CCCCCC
Q ss_conf             6888631479999999999998534268876784599984362114344557887652202233069996276-322322
Q gi|254780655|r  127 ATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNG-ISIDGP  205 (673)
Q Consensus       127 ~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~-~si~~~  205 (673)
                      ++-|.+|+++++|+|.|+|.            +++|||+.|||++.  |..-.+..++.++..|+++|+=||+ +..-+.
T Consensus        39 ~~lGtMG~~~p~aiGaa~a~------------p~kVi~i~GDGs~l--M~~geL~Ti~~~~~~n~~~ivlnN~~~g~~g~  104 (179)
T cd03372          39 YMLGSMGLASSIGLGLALAQ------------PRKVIVIDGDGSLL--MNLGALATIAAEKPKNLIIVVLDNGAYGSTGN  104 (179)
T ss_pred             EEECHHHHHHHHHHHHHHCC------------CCCEEEEECCHHHH--HHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC
T ss_conf             73134450889999998657------------99689996780465--43669999997268978999983887554135


Q ss_pred             --CCCCCCCCHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCC
Q ss_conf             --355678217998864144444-444440678888888751102210222013345
Q gi|254780655|r  206 --ISLADSTDQYARFRASGWNTL-SVNGHDHHAITSTLRKAQLSDKPTMIACETVIG  259 (673)
Q Consensus       206 --~~~~~~~~~~~~~~a~Gw~~~-~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T~kG  259 (673)
                        +......|..+..+++|+... .|+  +.+++.++++++  .++|++|+++..++
T Consensus       105 q~t~~~~~~Df~~iA~a~G~~~~~~v~--~~e~l~~~l~~~--~~gP~~iev~i~~~  157 (179)
T cd03372         105 QPTHAGKKTDLEAVAKACGLDNVATVA--SEEAFEKAVEQA--LDGPSFIHVKIKPG  157 (179)
T ss_pred             CCCCCCCCCCHHHHHHHCCCCEEEEEC--CHHHHHHHHHHH--CCCCEEEEEEECCC
T ss_conf             036667898999999987997399989--999999999984--79999999998799


No 114
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=98.75  E-value=6.9e-07  Score=68.93  Aligned_cols=63  Identities=17%  Similarity=0.169  Sum_probs=54.9

Q ss_pred             CCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCCCCCEEEEECC
Q ss_conf             699729999526889999999999997399439985746581000868899964367977999728
Q gi|254780655|r  556 TPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIEA  621 (673)
Q Consensus       556 ~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE~  621 (673)
                      .++.|++||+.||....+.+|.+.|+++|+++.++.++++.||-.   +.+.+++.+.+.++++|-
T Consensus       261 ~edAd~viV~~GS~~~~~~eaVd~lr~~G~kVG~l~vr~~rPFP~---~~l~~~l~~~k~V~Vler  323 (394)
T PRK08366        261 IDDADFVFMGMGSLMGTVKEAVDLLRKEGYKVGYAKVRWFRPFPK---EELYEIAESVKGIAVLDR  323 (394)
T ss_pred             CCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCH---HHHHHHHCCCCEEEEEEC
T ss_conf             888779999937518999999999997598665899988489999---999998757998999657


No 115
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=98.75  E-value=6.8e-07  Score=68.97  Aligned_cols=199  Identities=16%  Similarity=0.171  Sum_probs=107.5

Q ss_pred             HCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCEEE-CCCCCCCCCCCCCHHHHCCCCCH
Q ss_conf             00325762002356787998728876220010035553001245411110000130-24543333333310100022210
Q gi|254780655|r  413 RYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHV-LTHDSIGLGEDGPTHQPVEHLAA  491 (673)
Q Consensus       413 r~i~~GIaE~~~~~~aaGla~~~g~~p~~~tf~~F~~~~~~~ir~~al~~~~v~~v-~th~gi~~G~DGpTHq~iedia~  491 (673)
                      .|+++ =.|+++.+++.|.++ .|.+.+.+|-++=+.+|...|..++-.++|++++ ..+ +++  .-.++|..--|+..
T Consensus        58 ~~iq~-EsE~aA~~a~~GAs~-aGara~TaTSspGl~LM~E~l~~aag~~lP~Vi~vv~R-~~~--~~l~i~~dhsD~m~  132 (407)
T PRK09622         58 EFVMV-ESEHAAMSACVGAAA-AGGRVATATSSQGLALMVEVLYQASGMRLPIVLNLVNR-ALA--APLNVNGDHSDMYL  132 (407)
T ss_pred             EEEEE-CCHHHHHHHHHHHHH-HCCCEEEECCCCCHHHHHHHHHHHHHHHCCEEEEEECC-CCC--CCCCCCCCHHHHHH
T ss_conf             69985-578999999999985-38786730478738775208999998527848887415-678--88888778899997


Q ss_pred             HHHHCCCCEEEECCHHHHHHHHHHHHCCC-----CCCEEEEEC-------CCCCCCC------------CCC---CCCCC
Q ss_conf             11101221121120124577776520256-----783499952-------4444334------------566---55322
Q gi|254780655|r  492 LRAIPDLLVLRPADSIETLECWQVALKEK-----NRPSVLSLS-------RQNLPFL------------RTQ---YESNN  544 (673)
Q Consensus       492 lr~iPnl~v~~P~d~~E~~~~~~~al~~~-----~gP~~ir~~-------R~~~p~~------------~~~---~~~~~  544 (673)
                      .|.. ++.++.|++.+|+..+...|++..     -.|+.+-+-       .+.+..+            ...   .+...
T Consensus       133 ~rdt-G~i~l~~~svQE~~D~~i~Af~iAE~~~~r~Pv~v~~DGf~~sH~~~~v~~~~~e~~~~~~~~~~p~~~~ld~~~  211 (407)
T PRK09622        133 SRDS-GWISLCTCNPQEAYDFTLMAFRIAEDQKVRVPTIVNQDGFLCSHTAQNVRPLSDAVAYQFVGEYQPKNSLLDFDK  211 (407)
T ss_pred             CCCC-CEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             0588-739983799899999999999998875778888997302354156563335827777753355677666678756


Q ss_pred             CCCC--------------------------------------C----CEEEEECCCCCEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             1234--------------------------------------7----379985699729999526889999999999997
Q gi|254780655|r  545 LCAL--------------------------------------G----AYDYISTPNAQVTIFSSGSELKIAVEACEILSS  582 (673)
Q Consensus       545 ~~~~--------------------------------------G----~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~  582 (673)
                      ....                                      |    -.+..+.++.|++||+.|+....+.+|.+.|++
T Consensus       212 P~~~G~~~~~d~~~~~~~~~~~~~~~~~~~i~~~~~e~~~~~gr~y~~~e~y~~eDAe~viV~~GS~~~~~~~AVd~lR~  291 (407)
T PRK09622        212 PVTYGAQTEEDWHFEHKAQLHHAIMSASSVIEEVFNDFAKLTGRQYHLVETYQMEDAEVAIFALGTTVESAIVAAKEMRK  291 (407)
T ss_pred             CCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHH
T ss_conf             74447878997433322644176887899999999999998587556078717998779999807868999999999997


Q ss_pred             CCCCEEEEECCCCCHHCCCCHHHHHHHCCCCCEEEEEC
Q ss_conf             39943998574658100086889996436797799972
Q gi|254780655|r  583 RNISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIE  620 (673)
Q Consensus       583 ~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE  620 (673)
                      +|+++.++.++++.||-.   +.+.+.|.+.+.++.+|
T Consensus       292 ~G~KVGlir~r~~rPFP~---~~l~~al~~~K~V~Vld  326 (407)
T PRK09622        292 KGIKAGVATIRVLRPFPY---ERLGQALKNLKALAILD  326 (407)
T ss_pred             CCCEEEEEEEEEECCCCH---HHHHHHHCCCCEEEEEE
T ss_conf             498675899998589999---99999875799899997


No 116
>PRK09404 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=98.59  E-value=8.4e-05  Score=53.82  Aligned_cols=204  Identities=16%  Similarity=0.158  Sum_probs=106.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHCC--CCCCEECCCHHHHHHH---HHHHHHHHH----HHCCCEEECCCCCCCCCCCCCHHHH
Q ss_conf             325762002356787998728--8762200100355530---012454111----1000013024543333333310100
Q gi|254780655|r  415 LHYGVREHAMAAAMNGIALHK--GLAPYSGTFMVFSDYS---RPAIRLASL----MGIRVIHVLTHDSIGLGEDGPTHQP  485 (673)
Q Consensus       415 i~~GIaE~~~~~~aaGla~~~--g~~p~~~tf~~F~~~~---~~~ir~~al----~~~~v~~v~th~gi~~G~DGpTHq~  485 (673)
                      ++--..|.+..++--|.++..  .+.-+-+-|.-|..-|   .||---++-    +...+++..-| |. -|+ ||-|.+
T Consensus       653 ~nS~LSE~avlgFEyGYs~~~p~~LviWEAQFGDF~NgAQiiiDqfi~s~e~KW~~~sglvllLPH-Gy-eGq-GPEHSS  729 (931)
T PRK09404        653 IDSPLSEEAVLGFEYGYSTAEPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLSGLVMLLPH-GY-EGQ-GPEHSS  729 (931)
T ss_pred             EECHHHHHHHHHHHHHHCCCCCCCEEEEHHHHCCCCCCCEEEEEEHHHHHHHHHCCCCCEEEECCC-CC-CCC-CCCCCC
T ss_conf             934125777765453000258875054243314554673489750010367776101674898778-76-788-964444


Q ss_pred             --CCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECC-----
Q ss_conf             --0222101110122112112012457777652025-67834999524444334566553221234737998569-----
Q gi|254780655|r  486 --VEHLAALRAIPDLLVLRPADSIETLECWQVALKE-KNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTP-----  557 (673)
Q Consensus       486 --iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~-~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~-----  557 (673)
                        +|-.--|..=.||.|+.|+.+.+.-++|+.=+.. --.|-++--|+.=+ ..+.....-+.+..|.+.-+..+     
T Consensus       730 aR~ERfLQl~ae~N~~V~~~ttpA~~FH~LRrQ~~r~~rkPLiv~tpKsLL-R~~~~~S~~~e~~~g~F~~vi~d~~~~~  808 (931)
T PRK09404        730 ARLERFLQLCAEDNMQVCNPTTPAQYFHLLRRQVLRPFRKPLVVMTPKSLL-RHKLAVSSLEELAEGSFQPVIGDIDELD  808 (931)
T ss_pred             CCHHHHHHHCHHCCCEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCHHHH-CCCCCCCCHHHCCCCCCEEECCCCCCCC
T ss_conf             107899975302381899059879999999998503467875984736763-4854579989907994516327987688


Q ss_pred             --CCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCC---CCCEEEEE-CCC-CHHHH
Q ss_conf             --972999952688999999999999739943998574658100086889996436---79779997-286-02789
Q gi|254780655|r  558 --NAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIG---SSPIKIAI-EAG-LRQGW  627 (673)
Q Consensus       558 --~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~---~~~~~vti-E~g-~~~g~  627 (673)
                        .-+-.|+++|-.....+++.+....  -++.+|-+-.+-||-.+   .+.++|.   +...+|=+ |+- .-++|
T Consensus       809 ~~~v~rvi~CsGKvyydL~~~r~~~~~--~~vaivRiEqL~PfP~~---~l~~~l~~y~~~~~~vW~QEEp~N~GaW  880 (931)
T PRK09404        809 PKKVKRVVLCSGKVYYDLLEARRKRGI--DDVAIVRIEQLYPFPHK---ELAAELAKYPNVKEVVWCQEEPKNQGAW  880 (931)
T ss_pred             HHCCCEEEECCCHHHHHHHHHHHHCCC--CCEEEEEEHHCCCCCHH---HHHHHHHHCCCCCEEEEECCCCCCCCCH
T ss_conf             400868998276899999999997699--97799982112799789---9999998689987179965575635788


No 117
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=98.54  E-value=3.3e-07  Score=71.20  Aligned_cols=113  Identities=26%  Similarity=0.289  Sum_probs=82.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC-CHHHHHHHHHHHHHCCCCEEEEEECCCCCCC----C
Q ss_conf             8631479999999999998534268876784599984362114-3445578876522022330699962763223----2
Q gi|254780655|r  130 GPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLM-EGISQEAISFAGHLGLSKLIVLWDNNGISID----G  204 (673)
Q Consensus       130 G~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~-eG~~~EAl~~A~~~~l~nli~i~d~N~~si~----~  204 (673)
                      ..+|-+++.|.|+++|..           |.+|++++|||... .|.  ..+..|...+++-+++++||+-+..-    .
T Consensus        51 ~~mG~~~~~A~G~k~a~p-----------~~~Vv~~~GDG~~~~~G~--~~l~~av~~~~~it~iv~nN~~ygmTggQ~s  117 (178)
T cd02008          51 TCMGASIGVAIGMAKASE-----------DKKVVAVIGDSTFFHSGI--LGLINAVYNKANITVVILDNRTTAMTGGQPH  117 (178)
T ss_pred             ECCCCCHHHHHHHHHHCC-----------CCCEEEEECCHHHHHHHH--HHHHHHHHHCCCEEEEEEECCCCCCCCCCCC
T ss_conf             135773789977898789-----------983799957627766319--9999999829795999994853001367558


Q ss_pred             CCC------CCCCCCHHHHHHHCCCCCCC-CCCCCHHHHHHHHHHHHHCCCCHHHHHC
Q ss_conf             235------56782179988641444444-4444067888888875110221022201
Q gi|254780655|r  205 PIS------LADSTDQYARFRASGWNTLS-VNGHDHHAITSTLRKAQLSDKPTMIACE  255 (673)
Q Consensus       205 ~~~------~~~~~~~~~~~~a~Gw~~~~-vdG~d~~~i~~a~~~ak~~~kP~~I~~~  255 (673)
                      ++.      .....|+.+..+++|-..+. .+..|++++.+++++|.+.+.|++|++.
T Consensus       118 p~~~~~~~~~~~~~d~~~~a~a~G~~~v~~~~~~d~~~~~~~l~~A~~~~G~s~I~v~  175 (178)
T cd02008         118 PGTGKTLTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALAVPGVSVIIAK  175 (178)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             9988877787898798999997799999997844199999999999738997899994


No 118
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type; InterPro: IPR012846   Two groups of proteins form acetolactate from two molecules of pyruvate. The type of acetolactate synthase described in this entry also catalyzes the formation of acetohydroxybutyrate from pyruvate and 2-oxobutyrate, an early step in the branched chain amino acid biosynthesis; it is therefore also termed acetohydroxyacid synthase. In bacteria, this catalytic chain is associated with a smaller regulatory chain in an alpha2/beta2 heterotetramer. Acetolactate synthase is a thiamine pyrophosphate enzyme. In this type, FAD and Mg++ are also found. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.; GO: 0000287 magnesium ion binding, 0003984 acetolactate synthase activity, 0030976 thiamin pyrophosphate binding, 0050660 FAD binding, 0009082 branched chain family amino acid biosynthetic process.
Probab=98.26  E-value=2e-06  Score=65.54  Aligned_cols=394  Identities=20%  Similarity=0.262  Sum_probs=183.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCC
Q ss_conf             97643136899999984332544577898878877998565201899999997076889988986400038879889888
Q gi|254780655|r   40 GHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEY  119 (673)
Q Consensus        40 GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe~  119 (673)
                      |.||+.+  .+++=+||+    |...+     .=++||-.==|+   =+| +--||-           +    -+|    
T Consensus        21 GYPGGA~--LpiYD~Ly~----fe~~s-----~~~HIL~RHEQg---A~H-aADGYA-----------R----AsG----   66 (593)
T TIGR00118        21 GYPGGAI--LPIYDALYR----FETDS-----GIEHILVRHEQG---AVH-AADGYA-----------R----ASG----   66 (593)
T ss_pred             CCCCCCH--HHHHHHHHC----CCCCC-----CCEEECCCHHHH---HHH-HHCCCE-----------E----CCC----
T ss_conf             4898643--567766503----01268-----832721672557---645-423440-----------0----158----


Q ss_pred             CCCCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHHCCCCCCCCEEE-EEECCCCCCCHHH---------------------
Q ss_conf             89987306888631479999-999999998534268876784599-9843621143445---------------------
Q gi|254780655|r  120 GSCAGIEATTGPLGQGIANA-VGMAIAERKLREEFGDVLIDHYTY-VLVGDGCLMEGIS---------------------  176 (673)
Q Consensus       120 ~~~~~v~~~tG~lG~gis~a-~G~A~a~k~~~~~~~~~~~d~~v~-~iiGDG~l~eG~~---------------------  176 (673)
                       + +||-+.|  +|=|-.+. .|+|-|  |+.+- +-+++.--|= .+||-=+.||=..                     
T Consensus        67 -k-vGVv~~T--SGPGATN~VTGiAtA--y~DS~-P~Vv~tGQV~t~~IG~DAFQE~D~~GIt~PitKHsf~V~~~edlp  139 (593)
T TIGR00118        67 -K-VGVVLAT--SGPGATNLVTGIATA--YMDSV-PLVVFTGQVPTSLIGSDAFQEADILGITMPITKHSFQVKSAEDLP  139 (593)
T ss_pred             -C-EEEEEEE--CCCCCHHHHHHHHHH--HHCCC-CEEEECCCHHHHHCCCCCCHHHHHCCCCCCEEEEEECCCCHHHHH
T ss_conf             -3-0289860--798723356567775--42576-537751760001013750000011134666567530025878999


Q ss_pred             ---HHHHHHHHHHCCCCEEEEEEC--------CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHH------HHHHH
Q ss_conf             ---578876522022330699962--------7632232235567821799886414444444444067------88888
Q gi|254780655|r  177 ---QEAISFAGHLGLSKLIVLWDN--------NGISIDGPISLADSTDQYARFRASGWNTLSVNGHDHH------AITST  239 (673)
Q Consensus       177 ---~EAl~~A~~~~l~nli~i~d~--------N~~si~~~~~~~~~~~~~~~~~a~Gw~~~~vdG~d~~------~i~~a  239 (673)
                         -||.-+|.+=+-.+++|  |-        +++.++-|.+..        +.+|-   -.+.||-..      +|.+|
T Consensus       140 ~~~~~AF~IA~TGRPGPVlv--DlPKDv~~~~~~~~~~~P~~v~--------LPgY~---P~~~Gh~~Qdefv~qsI~kA  206 (593)
T TIGR00118       140 RIIKEAFHIATTGRPGPVLV--DLPKDVTTAEIEFPYDDPEKVN--------LPGYK---PTVEGHPLQDEFVMQSIKKA  206 (593)
T ss_pred             HHHHHHHHHHCCCCCCCEEE--ECCCCCCCHHHCCCCCCCCEEE--------CCCCC---CCCCCCCCHHHHHHHHHHHH
T ss_conf             99998776432766688278--5884224333326788886000--------78878---88898831457899999999


Q ss_pred             HHHHHHCCCCH-------------------------HHHHCCCCCCCCCCCCCCCC------CCCC-----CCCHHHH--
Q ss_conf             88751102210-------------------------22201334555700047711------0334-----3722332--
Q gi|254780655|r  240 LRKAQLSDKPT-------------------------MIACETVIGFGSPNRAGTNK------VHGS-----ALGQEEI--  281 (673)
Q Consensus       240 ~~~ak~~~kP~-------------------------~I~~~T~kG~G~~~~e~~~~------~HG~-----~l~~ee~--  281 (673)
                      ++.....+||+                         +=.+.|.+|+|. |=|+++.      .||.     ++.+-++  
T Consensus       207 ~~li~~AkkPVilvGGGvin~a~as~~L~elae~~~~PV~tTLmGlG~-FP~~Hp~~LGMlGMHGt~~AN~Av~EcDllI  285 (593)
T TIGR00118       207 AELIEKAKKPVILVGGGVINIAGASEELKELAERLQIPVTTTLMGLGS-FPEDHPLSLGMLGMHGTKTANLAVHECDLLI  285 (593)
T ss_pred             HHHHHHHCCCEEEECCHHHHCCCCHHHHHHHHHHCCCCCEECCCCCCC-CCCCCHHHHCCCCCHHHHHHHHHHHHCCEEE
T ss_conf             999997269779864135420554079999985407760010156788-7846835503567657888732542053214


Q ss_pred             ------------------HHHH--------HHCCCCCCCCCCC-------------HHHHHHHHHH-HHH----HHHHHH
Q ss_conf             ------------------1256--------6348777854389-------------7899999975-433----356688
Q gi|254780655|r  282 ------------------KATR--------KALNWDLDPFFIP-------------DDIMKKWRLA-GLR----SSQTRA  317 (673)
Q Consensus       282 ------------------~~~~--------k~lg~~~~~f~ip-------------~~v~~~~~~~-~~~----~~~~~~  317 (673)
                                        -.+|        -.++.|.||-+|.             ..|++.+-.+ ...    ......
T Consensus       286 AvG~RFdDRvTGnl~~FAp~AkraaaeGrGGiiHiDIDPaeIgK~v~~diPiVGDAr~VL~~ll~~~~~~~~~~~~~~~~  365 (593)
T TIGR00118       286 AVGARFDDRVTGNLAKFAPNAKRAAAEGRGGIIHIDIDPAEIGKNVRVDIPIVGDARNVLEELLKKLEKEKALKERSEEQ  365 (593)
T ss_pred             EEEEEECCCCCCCHHHHCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf             53000056634877672316567541478736999853765577114640103675899999999987630356722488


Q ss_pred             HHHHHHHHHHHHHHHC-CCCHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH---HHHCCCCCCC
Q ss_conf             7642467631111100-23001110776302355542000001355431013467888998865543---3220345556
Q gi|254780655|r  318 DWQERLSSMKSSIRKE-FERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSELVLEVVNDCLPE---LIGGSADLTG  393 (673)
Q Consensus       318 ~w~~~~~~~~~~~~~e-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vatr~a~g~~l~~i~~~~p~---iv~~sADl~~  393 (673)
                      .|.+++..|+..++-. ++.....++                  |        -+.+++.+.+..++   =...+-|+ |
T Consensus       366 ~W~~~i~~Wk~~~~l~Y~~~~~~~ki------------------K--------PQ~vi~~~~~~~~~~~~~aivTTDV-G  418 (593)
T TIGR00118       366 AWLEQINKWKKEYPLAYMDYTEEGKI------------------K--------PQQVIEEISRVTKDIGREAIVTTDV-G  418 (593)
T ss_pred             HHHHHHHHHHHHCCHHHCCCCCCCCC------------------C--------CHHHHHHHHHHCCCCCCCEEEECCC-C
T ss_conf             99999999876147312466788853------------------6--------0799999999627888536897277-7


Q ss_pred             CCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHH--HH----CCCCCCEE-----CCCHHHHHHHHHHHHHHHHHH
Q ss_conf             74000266634454320010032576200235678799--87----28876220-----010035553001245411110
Q gi|254780655|r  394 SNGTKTSQMKAISKSDFSGRYLHYGVREHAMAAAMNGI--AL----HKGLAPYS-----GTFMVFSDYSRPAIRLASLMG  462 (673)
Q Consensus       394 St~~~~~~~~~~~~~~~p~r~i~~GIaE~~~~~~aaGl--a~----~~g~~p~~-----~tf~~F~~~~~~~ir~~al~~  462 (673)
                      .+- .+  ...|++-..|.|||.-|    .++||==|+  |+    -..-..|+     +.|.|=+|-    +--+.--+
T Consensus       419 QhQ-MW--aA~fy~~~~Pr~fI~SG----GLGTMGFGlPAAiGAkvA~pe~~Vi~i~GDGsF~Mn~QE----L~t~~~y~  487 (593)
T TIGR00118       419 QHQ-MW--AAQFYPFKKPRKFITSG----GLGTMGFGLPAAIGAKVAKPEETVICITGDGSFQMNLQE----LSTIVQYD  487 (593)
T ss_pred             HHH-HH--HHHHCCCCCCCCEECCC----CCCCCCCCCHHHHCCCCCCCCCCEEEEECCCCCCCHHHH----HHHHHHCC
T ss_conf             347-88--98615777886413137----763110102688600004788664787538732123467----88998718


Q ss_pred             CCCEEEC-CCCCCCCC------------CCCCHHHHC--CCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCC--CCCEE
Q ss_conf             0001302-45433333------------333101000--2221011101221121120124577776520256--78349
Q gi|254780655|r  463 IRVIHVL-THDSIGLG------------EDGPTHQPV--EHLAALRAIPDLLVLRPADSIETLECWQVALKEK--NRPSV  525 (673)
Q Consensus       463 ~~v~~v~-th~gi~~G------------~DGpTHq~i--edia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~--~gP~~  525 (673)
                      +||+.|. ...-  +|            -=-.||+.-  =|..-|.-=-|+.=++=..+.|+...|+.|+...  ++|+.
T Consensus       488 iPV~i~iLNN~~--LGMV~QWQ~lfY~~RyS~t~~~~~~PDF~kLAEayG~~G~ri~~~~E~~~kL~Ea~~~~r~n~Pv~  565 (593)
T TIGR00118       488 IPVKIVILNNRY--LGMVRQWQELFYEERYSETHMGSELPDFVKLAEAYGIKGIRIEKPEELDEKLKEALESKRNNEPVL  565 (593)
T ss_pred             CCEEEEEECCCC--CCHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHCCCCCCEE
T ss_conf             964999845896--560488888752110235763068942899998729502554788779999999986146888469


Q ss_pred             EEE
Q ss_conf             995
Q gi|254780655|r  526 LSL  528 (673)
Q Consensus       526 ir~  528 (673)
                      |=.
T Consensus       566 ~Dv  568 (593)
T TIGR00118       566 LDV  568 (593)
T ss_pred             EEE
T ss_conf             999


No 119
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=98.20  E-value=0.0004  Score=48.92  Aligned_cols=105  Identities=15%  Similarity=0.169  Sum_probs=62.9

Q ss_pred             HHHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCC-C-CCC-----------CCHHHHCCC
Q ss_conf             56787998728876220010--0355530012454111100001302-454333-3-333-----------310100022
Q gi|254780655|r  425 AAAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHVL-THDSIG-L-GED-----------GPTHQPVEH  488 (673)
Q Consensus       425 ~~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~-~-G~D-----------GpTHq~ied  488 (673)
                      ++++.|++-.+.-+++++.-  +||+-=...+||.+-.++.+++|+. +.+-.+ + |++           +.....|++
T Consensus       409 ~~~~~G~~~~~~~~~v~a~iGDgTffHSG~~al~~AV~~~~nit~~ILdN~~tAMTGgQ~~pg~~~~~~g~~~~~i~i~~  488 (595)
T TIGR03336       409 IGVASGLSKAGEKQRIVAFIGDSTFFHTGIPGLINAVYNKANITVVILDNRITAMTGHQPNPGTGVTGMGEATKEISIEE  488 (595)
T ss_pred             HHHHEEECCCCCCCCEEEEECCCCCHHCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEHHH
T ss_conf             56531303257987379991366101056599999997699869999868850434899999866544688643223899


Q ss_pred             CCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf             210111012211211201245777765202567834999524
Q gi|254780655|r  489 LAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSR  530 (673)
Q Consensus       489 ia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R  530 (673)
                      +.--..+-.+.+..|.|-.++..+++.+++. +||++|.+-+
T Consensus       489 ~~r~~Gv~~v~~v~~~~~~~~~~~~~e~~~~-~GvsViI~~q  529 (595)
T TIGR03336       489 LCRASGVEFVEVVDPLNVKETIEVFKAALAA-EGVSVIIAKQ  529 (595)
T ss_pred             HHHHCCCCCEEEECCCCHHHHHHHHHHHHHC-CCCEEEEECC
T ss_conf             8876699843687877989999999998618-9978999729


No 120
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=98.15  E-value=5.3e-06  Score=62.49  Aligned_cols=28  Identities=18%  Similarity=0.255  Sum_probs=22.7

Q ss_pred             CCC-CHHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf             444-0678888888751102210222013
Q gi|254780655|r  229 NGH-DHHAITSTLRKAQLSDKPTMIACET  256 (673)
Q Consensus       229 dG~-d~~~i~~a~~~ak~~~kP~~I~~~T  256 (673)
                      +++ -..+|.++++.+....||+.|..-+
T Consensus       141 ~~~~A~~eIDrvi~~~~~~~RPvYI~lP~  169 (557)
T COG3961         141 DINTAPREIDRVIRTALKQRRPVYIGLPA  169 (557)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCEEEECCH
T ss_conf             71011799999999999754984897656


No 121
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=98.13  E-value=0.00016  Score=51.71  Aligned_cols=65  Identities=17%  Similarity=0.222  Sum_probs=48.0

Q ss_pred             CCCCEEEEECCHHHHHHHHHHHHHH-HCCCCEEEEECCCCCHHCCCCHHHHHHHCCCCC--EEEEECCCCH
Q ss_conf             9972999952688999999999999-739943998574658100086889996436797--7999728602
Q gi|254780655|r  557 PNAQVTIFSSGSELKIAVEACEILS-SRNISTRVVSVPCFELFFEQSDSYRAQIIGSSP--IKIAIEAGLR  624 (673)
Q Consensus       557 ~~~dv~iia~G~~v~~al~aa~~L~-~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~--~~vtiE~g~~  624 (673)
                      ++.++.||++|+....+.+++..+. ++|+++.++-++.+.||..   +.+.++++...  .++..|-..+
T Consensus       255 ~DAe~viV~~Gss~~~~~~a~~~~~~~~g~kvg~l~vr~~rPFp~---~~i~~~l~~~~~~~Vl~~e~~~g  322 (365)
T COG0674         255 EDAEIVIVAMGSSKGSTAEAVVDLLRDKGEKVGLLKVRTLRPFPA---EEIREVLPKTNAVVVLDVEISLG  322 (365)
T ss_pred             CCCCEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCH---HHHHHHHCCCCEEEEEEEECCCC
T ss_conf             972789999675248689999998874185468999977568998---99997613462269999823675


No 122
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=98.09  E-value=0.0015  Score=44.86  Aligned_cols=204  Identities=15%  Similarity=0.154  Sum_probs=110.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHCC--CCCCEECCCHHHHHHHH---HHHHHHHH----HHCCCEEECCCCCCCCCCCCCHHHH
Q ss_conf             325762002356787998728--87622001003555300---12454111----1000013024543333333310100
Q gi|254780655|r  415 LHYGVREHAMAAAMNGIALHK--GLAPYSGTFMVFSDYSR---PAIRLASL----MGIRVIHVLTHDSIGLGEDGPTHQP  485 (673)
Q Consensus       415 i~~GIaE~~~~~~aaGla~~~--g~~p~~~tf~~F~~~~~---~~ir~~al----~~~~v~~v~th~gi~~G~DGpTHq~  485 (673)
                      +|--..|.+..++--|.++..  .+.-+-+-|.-|.+-++   ||---++-    +...+++..-| |. .|+ ||-|.+
T Consensus       957 ~nS~LSE~avLGFEYGYS~~~P~~LviWEAQFGDFaNGAQvIIDQFIsSgE~KW~~~SgLVlLLPH-Gy-EGQ-GPEHSS 1033 (1234)
T PRK12270        957 YDSLLSEYAAMGFEYGYSVGNPDALVLWEAQFGDFANGAQTIIDEFISSGEAKWGQRSGVVLLLPH-GY-EGQ-GPDHSS 1033 (1234)
T ss_pred             ECCCCHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHCCCEEEEEEEEECHHHHHHHHCCEEEECCC-CC-CCC-CCCCCH
T ss_conf             815213555555552443368973354065553440586489865786177766413575788678-88-889-965214


Q ss_pred             --CCCCCHHHHHCCCCEEEECCHHHHHHHHHHHH-CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECC-----
Q ss_conf             --02221011101221121120124577776520-2567834999524444334566553221234737998569-----
Q gi|254780655|r  486 --VEHLAALRAIPDLLVLRPADSIETLECWQVAL-KEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTP-----  557 (673)
Q Consensus       486 --iedia~lr~iPnl~v~~P~d~~E~~~~~~~al-~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~-----  557 (673)
                        +|-.--|.+=-||+|..|+.+.+.-++|+.=+ ...-.|-++-.|++=+ ..+......+.+..|.+.-+..+     
T Consensus      1034 ARiERfLQLcAe~NmqV~~pTTPAqyFHlLRRQ~~r~~RKPLIv~tPKSLL-Rh~~a~S~l~e~~~G~F~~Vi~D~~~~~ 1112 (1234)
T PRK12270       1034 ARIERFLQLCAEGNMTVAQPSTPANYFHLLRRQALSGIRRPLVVFTPKSML-RNKAAVSDVEDFTEGKFRSVIDDPTVGD 1112 (1234)
T ss_pred             HHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEECCHHHH-CCCCCCCCHHHCCCCCCEECCCCCCCCC
T ss_conf             668999986104785999349838999999998741578886985847874-5833479978818995446168987788


Q ss_pred             --CCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCC---CCCEEEE-ECCC-CHHHH
Q ss_conf             --972999952688999999999999739943998574658100086889996436---7977999-7286-02789
Q gi|254780655|r  558 --NAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIG---SSPIKIA-IEAG-LRQGW  627 (673)
Q Consensus       558 --~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~---~~~~~vt-iE~g-~~~g~  627 (673)
                        .-+=.|+++|-.....++..+....  -++.+|-+-.+-||-.+.   +..+|.   +...+|= -|+- .-++|
T Consensus      1113 ~~~VkRvilCSGKvYYDL~~~R~~~~~--~dvAIvRiEQLyPfP~~~---l~~~l~~Ypna~e~vW~QEEP~N~GAW 1184 (1234)
T PRK12270       1113 PAKVKRVLLCSGKLYYDLAARREKDGR--DDVAIVRVEQLYPLPERR---LRETLARYPNAEEVFWVQEEPANQGAW 1184 (1234)
T ss_pred             HHHCCEEEEECCHHHHHHHHHHHHCCC--CCEEEEEEEECCCCCHHH---HHHHHHHCCCCCEEEEECCCCCCCCCH
T ss_conf             410838998067219999999997699--976999840028998899---999997489988689953486635778


No 123
>KOG1185 consensus
Probab=98.05  E-value=6.9e-05  Score=54.43  Aligned_cols=184  Identities=14%  Similarity=0.115  Sum_probs=76.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCC--CCCHHHHHHHH-CCCCCCCCC
Q ss_conf             976431368999999843325445778988788779985652018999999970768--89988986400-038879889
Q gi|254780655|r   40 GHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYALLYLLGYQ--DVTIEDIKNFR-TIGSKTAGH  116 (673)
Q Consensus        40 GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~~~l~G~~--~~~~e~l~~~r-~~~s~~~Gh  116 (673)
                      -|-+++.+..+++....+.+   +.+       --|.+--+|-+++.-+...+ |-+  +..-|+-.-|. +--+++.| 
T Consensus         8 ~~~~~~~~g~~~vA~~Lk~~---gVe-------~iFgiVGipV~el~~aaqal-GIk~I~~RnEqaA~yAA~A~gyLt~-   75 (571)
T KOG1185           8 VDKASSRHGGELVAAVLKAQ---GVE-------YIFGIVGIPVIELAVAAQAL-GIKFIGTRNEQAAVYAASAYGYLTG-   75 (571)
T ss_pred             CCCCCCCCHHHHHHHHHHHC---CCE-------EEEEEECCCHHHHHHHHHHC-CCEEEECCCHHHHHHHHHHHHHHCC-
T ss_conf             36532252889999999976---962-------99998162107999999980-9868303417889989987654328-


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHCCCCCCCCEEEEEE---------CCCCCCCHHHHHHHHHHHHH
Q ss_conf             888899873068886314799999-99999998534268876784599984---------36211434455788765220
Q gi|254780655|r  117 PEYGSCAGIEATTGPLGQGIANAV-GMAIAERKLREEFGDVLIDHYTYVLV---------GDGCLMEGISQEAISFAGHL  186 (673)
Q Consensus       117 pe~~~~~~v~~~tG~lG~gis~a~-G~A~a~k~~~~~~~~~~~d~~v~~ii---------GDG~l~eG~~~EAl~~A~~~  186 (673)
                           .|||-.-++  |-|+-.++ |++-|+   -++        .-..+|         |-|++||=.-.|++.--..+
T Consensus        76 -----kpGV~lVvs--GPGl~hal~gv~NA~---~n~--------wPll~IgGsa~~~~~~rGafQe~dQvel~rp~~K~  137 (571)
T KOG1185          76 -----KPGVLLVVS--GPGLTHALAGVANAQ---MNC--------WPLLLIGGSASTLLENRGAFQELDQVELFRPLCKF  137 (571)
T ss_pred             -----CCEEEEEEC--CCHHHHHHHHHHHHH---HCC--------CCEEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf             -----971899924--870777777764413---226--------75799844662432156322004177663166653


Q ss_pred             --CCCCEEEEEECC----CCCCCCCCCCCC---CCCHHHHHH----HCCCCC-------CCCCCCCHHHHHHHHHHHHHC
Q ss_conf             --223306999627----632232235567---821799886----414444-------444444067888888875110
Q gi|254780655|r  187 --GLSKLIVLWDNN----GISIDGPISLAD---STDQYARFR----ASGWNT-------LSVNGHDHHAITSTLRKAQLS  246 (673)
Q Consensus       187 --~l~nli~i~d~N----~~si~~~~~~~~---~~~~~~~~~----a~Gw~~-------~~vdG~d~~~i~~a~~~ak~~  246 (673)
                        +...+=-|.+.=    +.+++|..+.++   +.|+....+    ...-+.       --|-+-+..+|.+|.+-.|..
T Consensus       138 ~~r~~~~~~I~~~i~kA~r~a~~G~PG~~yvD~P~d~v~~~~~~e~~~~~~~p~~~~p~P~i~~p~~s~i~~av~llk~A  217 (571)
T KOG1185         138 VARPTSVRDIPPTIRKAVRAAMSGRPGPVYVDLPADVVLPSKMVEKEIDVSEPQPPIPLPPIPGPPPSQIQKAVQLLKSA  217 (571)
T ss_pred             CCCCCCHHHCCHHHHHHHHHHHCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             05778835453899999999735999766995334002320110023456787788899998999989999999999855


Q ss_pred             CCCHHHH
Q ss_conf             2210222
Q gi|254780655|r  247 DKPTMIA  253 (673)
Q Consensus       247 ~kP~~I~  253 (673)
                      ++|.+|+
T Consensus       218 KrPLlvv  224 (571)
T KOG1185         218 KRPLLVV  224 (571)
T ss_pred             CCCEEEE
T ss_conf             7967998


No 124
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=98.04  E-value=2.5e-05  Score=57.69  Aligned_cols=113  Identities=18%  Similarity=0.208  Sum_probs=76.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCC-----CCCCC
Q ss_conf             3147999999999999853426887678459998436211434455788765220223306999627632-----23223
Q gi|254780655|r  132 LGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGIS-----IDGPI  206 (673)
Q Consensus       132 lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~s-----i~~~~  206 (673)
                      .|-++++|.|+.++.+           |.+|+++.|||..- .+-..++..|...+.+-+++++||.-+.     -++.+
T Consensus        53 hG~a~~~A~G~k~a~p-----------~~~Vva~~GDG~~~-~iG~~~l~~A~~rn~~i~~iv~DN~~ygmTGgQ~sptT  120 (193)
T cd03375          53 HGRALAVATGVKLANP-----------DLTVIVVSGDGDLA-AIGGNHFIHAARRNIDITVIVHNNQIYGLTKGQASPTT  120 (193)
T ss_pred             HCCCHHHHHHHHHHCC-----------CCEEEEEEECCHHH-HCCHHHHHHHHHHCCCEEEEEECCCCEECCCCCCCCCC
T ss_conf             1160888867987599-----------97399997065576-45618899999809974999985840442368348898


Q ss_pred             C------------CCCCCCHHHHHHHCCCCC-CCCCCCCHHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf             5------------567821799886414444-4444440678888888751102210222013
Q gi|254780655|r  207 S------------LADSTDQYARFRASGWNT-LSVNGHDHHAITSTLRKAQLSDKPTMIACET  256 (673)
Q Consensus       207 ~------------~~~~~~~~~~~~a~Gw~~-~~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T  256 (673)
                      .            .....|+.+..+++|-.+ -+++-.|++++.+++++|.+.+.|++|++.+
T Consensus       121 ~~g~~t~ttp~G~~~~~~d~~~ia~a~G~~yVa~~~~~~~~~l~~~ik~Al~~~G~s~I~v~s  183 (193)
T cd03375         121 PEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQHKGFSFVEVLS  183 (193)
T ss_pred             CCCCEECCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             898554136778765788999999875998799965799999999999998089988999988


No 125
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=98.03  E-value=0.00099  Score=46.08  Aligned_cols=104  Identities=20%  Similarity=0.243  Sum_probs=62.9

Q ss_pred             HHHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEEC-C-----------CCCCCCCCCC--CHHHHCCC
Q ss_conf             56787998728876220010--0355530012454111100001302-4-----------5433333333--10100022
Q gi|254780655|r  425 AAAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHVL-T-----------HDSIGLGEDG--PTHQPVEH  488 (673)
Q Consensus       425 ~~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v~-t-----------h~gi~~G~DG--pTHq~ied  488 (673)
                      +++++|++....-++|. +-  ++|.--...+|+.+-+++.+++++. +           |.|.++-..|  .++..|+.
T Consensus       434 ig~a~g~~~~~~k~~va-~iGDsTF~HsGi~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~~~~~g~~~~~i~iee  512 (640)
T COG4231         434 IGIAGGLSFASTKKIVA-VIGDSTFFHSGILALINAVYNKANILVVVLDNRTTAMTGGQPHPGTGVAAEGTKSTAIVIEE  512 (640)
T ss_pred             HHHCCCCCCCCCCCEEE-EECCCCCCCCCCHHHHHHHHCCCCEEEEEEECCCHHCCCCCCCCCCCCCCCCCCCCEEEHHH
T ss_conf             00024542036885699-95366322048188999986589759999856302102898899856456787650357656


Q ss_pred             CCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf             210111012211211201245777765202567834999524
Q gi|254780655|r  489 LAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSR  530 (673)
Q Consensus       489 ia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R  530 (673)
                      +.=--.+--+.+..|.|-.++...++.|++.. +|++|.+-|
T Consensus       513 ~~r~~Gv~~v~~vdp~~~~~~~~~~keale~~-gpsViiak~  553 (640)
T COG4231         513 VVRAMGVEDVETVDPYDVKELSEAIKEALEVP-GPSVIIAKR  553 (640)
T ss_pred             HHHHCCCEEEECCCCCCHHHHHHHHHHHHCCC-CCEEEEECC
T ss_conf             56524841540128735688999999986378-865999747


No 126
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=97.96  E-value=1.8e-05  Score=58.64  Aligned_cols=89  Identities=24%  Similarity=0.305  Sum_probs=40.5

Q ss_pred             HHHHH-HHHHHHHHHHHHHHHCCCCCCCCEEEEE---ECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
Q ss_conf             14799-9999999999853426887678459998---4362114344557887652202233069996276322322355
Q gi|254780655|r  133 GQGIA-NAVGMAIAERKLREEFGDVLIDHYTYVL---VGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISL  208 (673)
Q Consensus       133 G~gis-~a~G~A~a~k~~~~~~~~~~~d~~v~~i---iGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~  208 (673)
                      -||.+ +|+++|...+  +         +++|++   ||-|+.+  +. -|..+|-..+|+-|.+==|  -+      ..
T Consensus        65 EQgMAhaAiayaKq~~--R---------rr~~A~tsSiGPGA~N--mv-TaAalA~~NrlPvLllPgD--vf------A~  122 (617)
T COG3962          65 EQGMAHAAIAYAKQHR--R---------RRIYAVTSSIGPGAAN--MV-TAAALAHVNRLPVLLLPGD--VF------AT  122 (617)
T ss_pred             HHHHHHHHHHHHHHHH--H---------CEEEEEECCCCCCHHH--HH-HHHHHHHHHCCCEEEECCC--HH------CC
T ss_conf             7677889999999975--4---------2115774366885788--99-9999987604856750441--00------12


Q ss_pred             CCCCCHHHHHHHCCCCCCCCCC------------CCHHHHHHHHHHH
Q ss_conf             6782179988641444444444------------4067888888875
Q gi|254780655|r  209 ADSTDQYARFRASGWNTLSVNG------------HDHHAITSTLRKA  243 (673)
Q Consensus       209 ~~~~~~~~~~~a~Gw~~~~vdG------------~d~~~i~~a~~~a  243 (673)
                      ..++++...+|.|+=-.+.+|.            .-.++|..|+-.|
T Consensus       123 R~PDPVLQQ~E~~~d~~it~NDcfrPVSRYfDRItRPEQl~sal~rA  169 (617)
T COG3962         123 RQPDPVLQQLEQFGDGTITTNDCFRPVSRYFDRITRPEQLMSALPRA  169 (617)
T ss_pred             CCCCHHHHHHHCCCCCCEECCCCCCCHHHHHHHCCCHHHHHHHHHHH
T ss_conf             69985888653035672220113434777766137999999999999


No 127
>KOG0451 consensus
Probab=97.84  E-value=0.00053  Score=48.01  Aligned_cols=503  Identities=17%  Similarity=0.213  Sum_probs=212.7

Q ss_pred             CCEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC----------------------
Q ss_conf             8779985652018999999970768899889864000388798898888998730688----------------------
Q gi|254780655|r   72 RDRFVLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATT----------------------  129 (673)
Q Consensus        72 rDr~v~s~GH~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~t----------------------  129 (673)
                      -..+|+--.|..-+-    .+++..+++.  -+-||+..+. +-|||.-+.-|+..|.                      
T Consensus       210 ie~viigmpHRGRln----Llt~Ll~fpP--~~mFRK~~G~-sEFpE~~~A~gDVlSHl~sS~dykg~~~~lhvtMlpNP  282 (913)
T KOG0451         210 IEHVIIGMPHRGRLN----LLTALLNFPP--AKMFRKLSGA-SEFPEDIEAMGDVLSHLHSSEDYKGLGKKLHVTMLPNP  282 (913)
T ss_pred             CCEEEEECCCCCCCH----HHHHHHCCCH--HHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCH
T ss_conf             505887056667405----8888843998--9999873073-22750356777788873235544046884479955881


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHH--HCCC---CCCCCEEEE--EECCCCCC-CHHHHHHHHHH--HHHCCCCEEEEEECCC
Q ss_conf             8631479999999999998534--2688---767845999--84362114-34455788765--2202233069996276
Q gi|254780655|r  130 GPLGQGIANAVGMAIAERKLRE--EFGD---VLIDHYTYV--LVGDGCLM-EGISQEAISFA--GHLGLSKLIVLWDNNG  199 (673)
Q Consensus       130 G~lG~gis~a~G~A~a~k~~~~--~~~~---~~~d~~v~~--iiGDG~l~-eG~~~EAl~~A--~~~~l~nli~i~d~N~  199 (673)
                      -||-.--+.|+|-+.++..-++  .|..   ..+..+|.+  +-||++.. .|..||.++++  -|..+.--+-++-||+
T Consensus       283 SHLEAvNPVAmGKtR~rqqsr~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQ  362 (913)
T KOG0451         283 SHLEAVNPVAMGKTRSRQQSRGEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQ  362 (913)
T ss_pred             HHHHCCCCHHHCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCHHHCCCCCCHHHHHHCCCCCEEECCEEEEEECCC
T ss_conf             66401572532203677775137898987768887726899985451111586368777431487335565589996262


Q ss_pred             CCCCCCCCCCC----CCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH----HHCCCCHHHHHCCCCCCCCCCCCC----
Q ss_conf             32232235567----821799886414444444444067888888875----110221022201334555700047----
Q gi|254780655|r  200 ISIDGPISLAD----STDQYARFRASGWNTLSVNGHDHHAITSTLRKA----QLSDKPTMIACETVIGFGSPNRAG----  267 (673)
Q Consensus       200 ~si~~~~~~~~----~~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~a----k~~~kP~~I~~~T~kG~G~~~~e~----  267 (673)
                      +....+-+...    ..|+   -++++..||.|+|.|.+++.+|-+-|    +.-.|-++|-.....-||.-...+    
T Consensus       363 vgfTtp~~rGRSs~ycsDi---aK~~~~pviHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwgHnelddp~ft  439 (913)
T KOG0451         363 VGFTTPGDRGRSSAYCSDI---AKSIQAPVIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNELDDPTFT  439 (913)
T ss_pred             CCCCCCCCCCCCCHHHHHH---HHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHCCCCCCCCCCC
T ss_conf             0023764466530245678---9873787798479998999999999999999864222530677777523444674446


Q ss_pred             -------------CC------CCCCCCCCHHHHHHHHHHC----C--CCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_conf             -------------71------1033437223321256634----8--777854389789999997543-33566887642
Q gi|254780655|r  268 -------------TN------KVHGSALGQEEIKATRKAL----N--WDLDPFFIPDDIMKKWRLAGL-RSSQTRADWQE  321 (673)
Q Consensus       268 -------------~~------~~HG~~l~~ee~~~~~k~l----g--~~~~~f~ip~~v~~~~~~~~~-~~~~~~~~w~~  321 (673)
                                   .+      -.-+.-+.+++++..|+++    +  +...+.+.|.+.+-..+..+. ..++....|..
T Consensus       440 spvmyk~v~aReSvPdlya~~L~~eg~~tee~vkE~~~~y~~~Ln~eL~~~~~y~Pp~~~~~~~W~gf~qapk~it~WdT  519 (913)
T KOG0451         440 SPVMYKEVEARESVPDLYAQQLAKEGVLTEEKVKEMRDEYMKYLNEELALAPAYQPPPSYFEKQWTGFQQAPKEITYWDT  519 (913)
T ss_pred             CHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHCCCCC
T ss_conf             70477777764134089999998615553999999999999999899840776689963467752212158055311134


Q ss_pred             HHHHHHHHHHHC---CCCHHHHHCCCCCHHHHHHHCCCCC----CC----CCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             467631111100---2300111077630235554200000----13----554310134678889988655433220345
Q gi|254780655|r  322 RLSSMKSSIRKE---FERRFSDALPDCFDNAFINLKKKFE----HS----KPMIATRKSSELVLEVVNDCLPELIGGSAD  390 (673)
Q Consensus       322 ~~~~~~~~~~~e---~~~~~~~~~p~~~~~~~~~~~~~~~----~~----~~~vatr~a~g~~l~~i~~~~p~iv~~sAD  390 (673)
                             .++-.   |.-..+-+.|+.|..-...+.....    +.    +-.-||-.+  .++..+.-.-.++-.-.-|
T Consensus       520 -------Gv~~dLLrfiG~~SV~vPedf~~H~HLlKtHv~sRm~Km~~G~kiDWaTAEA--lA~GSll~qG~nVRiSGqD  590 (913)
T KOG0451         520 -------GVDYDLLRFIGQQSVTVPEDFNIHPHLLKTHVNSRMKKMENGVKIDWATAEA--LAIGSLLYQGHNVRISGQD  590 (913)
T ss_pred             -------CCCHHHHHHHCCCCEECCHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHHHCCCCEEEECCC
T ss_conf             -------7646899983667640632114147999988999999875377645477888--9888888536733660340


Q ss_pred             CCCCCCCCCCCC------CC-CCCCC--CHH--HCCCC---CCCHHHHHHHHHHHHHCC-CCCCEE-CCCHHHHHHHHHH
Q ss_conf             556740002666------34-45432--001--00325---762002356787998728-876220-0100355530012
Q gi|254780655|r  391 LTGSNGTKTSQM------KA-ISKSD--FSG--RYLHY---GVREHAMAAAMNGIALHK-GLAPYS-GTFMVFSDYSRPA  454 (673)
Q Consensus       391 l~~St~~~~~~~------~~-~~~~~--~p~--r~i~~---GIaE~~~~~~aaGla~~~-g~~p~~-~tf~~F~~~~~~~  454 (673)
                      +...|......+      .. +.+-|  -++  -++++   -..|.+..++--||+... ...+++ +-|.-|..-+  |
T Consensus       591 VGRGTFshRHAM~VdQ~Td~~~IPLN~m~~~qkg~LEvans~LSEEAvLGFEyGmsienP~~L~iWEAQFGDFfNGA--Q  668 (913)
T KOG0451         591 VGRGTFSHRHAMLVDQQTDEMFIPLNSMEGGQKGKLEVANSILSEEAVLGFEYGMSIENPNNLIIWEAQFGDFFNGA--Q  668 (913)
T ss_pred             CCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEHHHHCCCCCCC--E
T ss_conf             47641121211243125661353621037776871674266221766630110323578653245323330313675--4


Q ss_pred             H-HHHHHH--------HCCCEEECCCCCCCCCCC--CCHHHH--CCCCC---------HHHHHCCCCEEEECCHHHHHHH
Q ss_conf             4-541111--------000013024543333333--310100--02221---------0111012211211201245777
Q gi|254780655|r  455 I-RLASLM--------GIRVIHVLTHDSIGLGED--GPTHQP--VEHLA---------ALRAIPDLLVLRPADSIETLEC  512 (673)
Q Consensus       455 i-r~~al~--------~~~v~~v~th~gi~~G~D--GpTHq~--iedia---------~lr~iPnl~v~~P~d~~E~~~~  512 (673)
                      | -+--+.        ....++..-|     |.|  ||-|.+  ||-.-         .=.---||.|..|..+.+...+
T Consensus       669 IIiDTFi~sgE~KWl~ssglvmLLPH-----GyDGAgpeHSSCRiERFLQlCDS~E~~vDGd~VNm~vvnPTTpAQYfHl  743 (913)
T KOG0451         669 IIIDTFIVSGETKWLESSGLVMLLPH-----GYDGAGPEHSSCRIERFLQLCDSKETSVDGDSVNMHVVNPTTPAQYFHL  743 (913)
T ss_pred             EEEEEEECCCCHHHHHHCCEEEECCC-----CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHH
T ss_conf             78764010551244541874898257-----7688897643156999998732333367776045797079978999999


Q ss_pred             HHHHHCC-CCCCEEEEECCCCC--C----CC-CCCCCCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf             7652025-67834999524444--3----34-566553221234737998569972999952688999999999999739
Q gi|254780655|r  513 WQVALKE-KNRPSVLSLSRQNL--P----FL-RTQYESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRN  584 (673)
Q Consensus       513 ~~~al~~-~~gP~~ir~~R~~~--p----~~-~~~~~~~~~~~~G~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~G  584 (673)
                      ++.-+-. --.|-++.-|+--+  |    .. +-.......-.+|-. ....+.-+-.|+.+|--.....++.+.+..+.
T Consensus       744 LRRQ~vrNfRKPLiVv~PK~LLRlPaA~ST~~ef~PGTtf~nVigd~-~~~p~kvkkvifcSGKH~y~l~k~Re~rgakd  822 (913)
T KOG0451         744 LRRQLVRNFRKPLIVVAPKTLLRLPAATSTHEEFQPGTTFHNVIGDT-IAKPEKVKKVIFCSGKHYYTLAKEREKRGAKD  822 (913)
T ss_pred             HHHHHHHHCCCCEEEECHHHHHHCCCHHHHHHHCCCCCCCCCCCCCC-CCCHHHHEEEEEECCCCHHHHHHHHHHCCCCC
T ss_conf             99998774258648855088761700120476428985115433443-36946701799965831434888787605555


Q ss_pred             CCEEEEECCCCCHHCCCC
Q ss_conf             943998574658100086
Q gi|254780655|r  585 ISTRVVSVPCFELFFEQS  602 (673)
Q Consensus       585 i~~~Vi~~~s~k~ld~~~  602 (673)
                       .+.++-+-++-||--++
T Consensus       823 -~~AI~RvE~LCPFPi~~  839 (913)
T KOG0451         823 -TVAILRVESLCPFPIQE  839 (913)
T ss_pred             -CEEEEEHHHCCCCCHHH
T ss_conf             -21467525408974699


No 128
>KOG1184 consensus
Probab=97.81  E-value=4.9e-05  Score=55.54  Aligned_cols=30  Identities=23%  Similarity=0.328  Sum_probs=22.4

Q ss_pred             CCCC-HHHHHHHHHHHHHCCCCHHHHHCCCC
Q ss_conf             4440-67888888875110221022201334
Q gi|254780655|r  229 NGHD-HHAITSTLRKAQLSDKPTMIACETVI  258 (673)
Q Consensus       229 dG~d-~~~i~~a~~~ak~~~kP~~I~~~T~k  258 (673)
                      |+.| .+.|.+|++.+-...||+.|-+-+=.
T Consensus       141 ~~e~A~~~ID~aI~~~~~~~kPVYi~vP~n~  171 (561)
T KOG1184         141 DIEDAPEQIDKAIRTALKESKPVYIGVPANL  171 (561)
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf             8767699999999999874498599821430


No 129
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=97.75  E-value=0.00033  Score=49.50  Aligned_cols=123  Identities=20%  Similarity=0.181  Sum_probs=81.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCC-----CC
Q ss_conf             8863147999999999999853426887678459998436211434455788765220223306999627632-----23
Q gi|254780655|r  129 TGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGIS-----ID  203 (673)
Q Consensus       129 tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~s-----i~  203 (673)
                      ....|-.++.|.|+..|.+.+..+  .   |-.|+++.|||.+. ..-+..+.+|...+.|-+++++||..++     .|
T Consensus        55 h~~hgra~a~AtGik~a~~~l~~~--~---~~~Vv~~~GDG~~~-dIG~~~l~haa~Rn~~i~~iv~dN~~YgnTGGQ~S  128 (235)
T cd03376          55 HVAFENAAAVASGIEAALKALGRG--K---DITVVAFAGDGGTA-DIGFQALSGAAERGHDILYICYDNEAYMNTGIQRS  128 (235)
T ss_pred             CHHHCCHHHHHHHHHHHHHHHHCC--C---CCEEEEEECCCHHH-HHHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCCC
T ss_conf             400014677666199999986138--9---96399996474475-42078899999829983999988821003689669


Q ss_pred             CCCCC-----------------CCCCCHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHHCCCCHHHHHCCC
Q ss_conf             22355-----------------678217998864144444-4444406788888887511022102220133
Q gi|254780655|r  204 GPISL-----------------ADSTDQYARFRASGWNTL-SVNGHDHHAITSTLRKAQLSDKPTMIACETV  257 (673)
Q Consensus       204 ~~~~~-----------------~~~~~~~~~~~a~Gw~~~-~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T~  257 (673)
                      ..+..                 ...-|+.....++|-.+. ++...|+..+.+.+++|...+.|++|++.+.
T Consensus       129 ~tTp~G~~t~tsp~G~~~~g~~~~~kd~~~i~~a~g~~yVA~~~~~~~~~~~k~i~~A~~~~G~s~i~v~sp  200 (235)
T cd03376         129 GSTPYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKALSIEGPAYIHILSP  200 (235)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf             899898631126888557787778869999998709958999745899999999999972899889999647


No 130
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase; InterPro: IPR014092   Members of this family are examples of pyruvate oxidase (1.2.3.3 from EC), an enzyme with FAD and TPP as cofactors that catalyses the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase (1.2.2.2 from EC) as in Escherichia coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name..
Probab=97.62  E-value=0.00017  Score=51.55  Aligned_cols=16  Identities=31%  Similarity=0.435  Sum_probs=10.4

Q ss_pred             CCCCCCCCHHHHHHHHHH
Q ss_conf             976431368999999843
Q gi|254780655|r   40 GHPGLPMGMADVVTALFT   57 (673)
Q Consensus        40 GH~g~~l~~~el~~~L~~   57 (673)
                      |-||+||++  +|-||+.
T Consensus        19 G~pGGS~~S--~M~AL~~   34 (577)
T TIGR02720        19 GIPGGSFNS--TMDALAE   34 (577)
T ss_pred             CCCCCCHHH--HHHHHHH
T ss_conf             368875778--9999986


No 131
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=97.60  E-value=0.00018  Score=51.46  Aligned_cols=117  Identities=21%  Similarity=0.204  Sum_probs=82.2

Q ss_pred             HHHCCCCCCCHHHHHHHHHHHHHCCCCCCEE-CCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHCCCC
Q ss_conf             0100325762002356787998728876220-010035553001245411110000130245433333333101000222
Q gi|254780655|r  411 SGRYLHYGVREHAMAAAMNGIALHKGLAPYS-GTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHL  489 (673)
Q Consensus       411 p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~-~tf~~F~~~~~~~ir~~al~~~~v~~v~th~gi~~G~DGpTHq~iedi  489 (673)
                      +++.+..-.-|++++.+|.|.+.-+| +|+| .|....+.-+.++|..+...+.|++++.+..+.. ..+..+||.++|+
T Consensus        34 ~~~~~v~~~hE~~A~~mAdgyar~~g-~~v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~~~-~~~~~~~q~~d~~  111 (154)
T cd06586          34 DKRIIDTVIHELGAAGAAAGYARAGG-PPVVIVTSGTGLLNAINGLADAAAEHLPVVFLIGARGIS-AQAKQTFQSMFDL  111 (154)
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHHHC-CCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHH-HCCCCCCCCHHHH
T ss_conf             99579912858899999999999749-948996379579989999999987569889996688876-6278988311399


Q ss_pred             CHHHHHCCCCEEE--ECCH-HHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf             1011101221121--1201-245777765202567834999524
Q gi|254780655|r  490 AALRAIPDLLVLR--PADS-IETLECWQVALKEKNRPSVLSLSR  530 (673)
Q Consensus       490 a~lr~iPnl~v~~--P~d~-~E~~~~~~~al~~~~gP~~ir~~R  530 (673)
                      .++|.+.....-.  |.+. ..+..+++.|... .||++|.+||
T Consensus       112 ~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-pGPv~l~iP~  154 (154)
T cd06586         112 GMYRSIPEANISSPSPAELPAGIDHAIRTAYAS-QGPVVVRLPR  154 (154)
T ss_pred             HHHHHHHHEEEECCCHHHHHHHHHHHHHHHHCC-CCCEEEECCC
T ss_conf             999999864899499999999999999998549-9878986288


No 132
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=97.60  E-value=0.00012  Score=52.79  Aligned_cols=16  Identities=31%  Similarity=0.534  Sum_probs=10.2

Q ss_pred             CCCCCCCCCHHHHHHHHH
Q ss_conf             897643136899999984
Q gi|254780655|r   39 SGHPGLPMGMADVVTALF   56 (673)
Q Consensus        39 ~GH~g~~l~~~el~~~L~   56 (673)
                      +|.||++.|-.  +-+|.
T Consensus        35 aGYpGtPstei--~e~la   50 (640)
T COG4231          35 AGYPGTPSTEL--IETLA   50 (640)
T ss_pred             ECCCCCCCHHH--HHHHH
T ss_conf             00699981799--99999


No 133
>PRK08322 acetolactate synthase; Reviewed
Probab=97.54  E-value=0.00073  Score=47.03  Aligned_cols=19  Identities=11%  Similarity=0.183  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHCC-CCHHHH
Q ss_conf             8888888751102-210222
Q gi|254780655|r  235 AITSTLRKAQLSD-KPTMIA  253 (673)
Q Consensus       235 ~i~~a~~~ak~~~-kP~~I~  253 (673)
                      .+.+|++.|.... +|+.|.
T Consensus       137 ~~~~A~~~A~~~~pGPV~l~  156 (547)
T PRK08322        137 VVREAFRLAEEERPGAVHLE  156 (547)
T ss_pred             HHHHHHHHHHCCCCCEEEEE
T ss_conf             99999999743899728990


No 134
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=97.47  E-value=0.0015  Score=44.80  Aligned_cols=127  Identities=20%  Similarity=0.170  Sum_probs=78.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCC-----CC
Q ss_conf             8863147999999999999853426887678459998436211434455788765220223306999627632-----23
Q gi|254780655|r  129 TGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGIS-----ID  203 (673)
Q Consensus       129 tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~s-----i~  203 (673)
                      .+..|...+.|.|+..|.+.+..+....-.+-.||++-|||++. ..-+..+.+|...+.|-+++++||.-+.     .|
T Consensus        57 h~~hgra~a~AtGik~a~~~~~~~~~~~~~~~~Vv~~~GDGd~~-~IG~~~l~ha~~Rn~~i~~I~~dN~~Yg~TggQ~S  135 (237)
T cd02018          57 NSLFEDANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATY-DIGFGALSHSLFRGEDITVIVLDNEVYSNTGGQRS  135 (237)
T ss_pred             HHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHH-HCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC
T ss_conf             00123318889999999987311110125788689995573576-50078899999828983999988813446788479


Q ss_pred             CCCCC------------CCCCCHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHH-CCCCHHHHHCC
Q ss_conf             22355------------678217998864144444-4444406788888887511-02210222013
Q gi|254780655|r  204 GPISL------------ADSTDQYARFRASGWNTL-SVNGHDHHAITSTLRKAQL-SDKPTMIACET  256 (673)
Q Consensus       204 ~~~~~------------~~~~~~~~~~~a~Gw~~~-~vdG~d~~~i~~a~~~ak~-~~kP~~I~~~T  256 (673)
                      +.+..            ..+-|+.....++|-.+. ++.-.+...+.+++++|.. .+.|++|++.+
T Consensus       136 ptTp~G~~T~ttp~G~~~~~~~~~~ia~~~g~~yVAr~s~~~~~~~~k~~~~A~~~~~G~s~v~vls  202 (237)
T cd02018         136 GATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVVKEAISRTDGPTFIHAYT  202 (237)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             8998987130168997678879999998659958999855999999999999986599988999974


No 135
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=97.46  E-value=0.00026  Score=50.21  Aligned_cols=28  Identities=18%  Similarity=0.357  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHH-HCCCCEEEEECCCCC
Q ss_conf             8999999999999-739943998574658
Q gi|254780655|r  569 ELKIAVEACEILS-SRNISTRVVSVPCFE  596 (673)
Q Consensus       569 ~v~~al~aa~~L~-~~Gi~~~Vi~~~s~k  596 (673)
                      -+....++.+.+. .+|.++=|.+-+|.-
T Consensus       505 ~~~~~~~~~~e~~~~~GvsViI~~q~Ca~  533 (595)
T TIGR03336       505 NVKETIEVFKAALAAEGVSVIIAKQPCVL  533 (595)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             98999999999861899789997290327


No 136
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=97.43  E-value=0.0014  Score=44.97  Aligned_cols=123  Identities=21%  Similarity=0.175  Sum_probs=78.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC-CCHHHHHHHHHHHHHCCCCEEEEEECCCC-----CCCCC
Q ss_conf             3147999999999999853426887678459998436211-43445578876522022330699962763-----22322
Q gi|254780655|r  132 LGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCL-MEGISQEAISFAGHLGLSKLIVLWDNNGI-----SIDGP  205 (673)
Q Consensus       132 lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l-~eG~~~EAl~~A~~~~l~nli~i~d~N~~-----si~~~  205 (673)
                      .|-..+.|.|+..|.|.+..+      |..|+++.|||.. .-|  +.++..|...+.|-+++++||.-+     |-|+.
T Consensus        71 f~~~~a~asGi~~Alk~~~~~------d~~Viv~~GDG~~~dIG--~~~l~ha~~Rn~~i~~iv~DNe~Y~nTGgQ~S~t  142 (300)
T PRK11864         71 FAATAAVASGIEEALKVRGEK------GHVVVVWAGDGGTADIG--FQALSGAAERGHDILYIMYDNEAYMNTGIQRSGS  142 (300)
T ss_pred             HCCCHHHHHHHHHHHHHHCCC------CCEEEEEECCCHHHHHH--HHHHHHHHHCCCCEEEEEECCCEEECCCCCCCCC
T ss_conf             412267799999999970899------86799992475265400--6878999982898599998571310468846888


Q ss_pred             CCC------------CCCCCHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHHCCCCHHHHHCCC--CCCCC
Q ss_conf             355------------678217998864144444-4444406788888887511022102220133--45557
Q gi|254780655|r  206 ISL------------ADSTDQYARFRASGWNTL-SVNGHDHHAITSTLRKAQLSDKPTMIACETV--IGFGS  262 (673)
Q Consensus       206 ~~~------------~~~~~~~~~~~a~Gw~~~-~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T~--kG~G~  262 (673)
                      +..            ...-|+.....++|-.+. .+---+...+.+.+++|...+.|++|++.+.  .||++
T Consensus       143 Tp~Ga~t~ttp~Gk~~~kkdl~~i~~a~g~~YVA~~~~a~~~~l~~~i~kA~~~~G~s~i~v~spCp~gw~~  214 (300)
T PRK11864        143 TPYGAWTTTTPGGKRERKKPVADIMAAHGVPYVATASIAYPEDFIRKLKKAAEIPGFKFIHLLAPCPPGWRF  214 (300)
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC
T ss_conf             988542455899987899899999997599879998556999999999999718998799997889565886


No 137
>pfam03894 XFP D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase. Bacterial enzyme splits fructose-6-P and/or xylulose-5-P with the aid of inorganic phosphate into either acetyl-P and erythrose-4-P and/or acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22. This family is distantly related to transketolases e.g. pfam02779.
Probab=97.33  E-value=0.00051  Score=48.13  Aligned_cols=146  Identities=19%  Similarity=0.126  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHH-HHHHCCCCCCCCCCCCC-----CC--CCCCCC------CCCHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             6788899886554-33220345556740002-----66--634454------3200100325762002356787998728
Q gi|254780655|r  370 SELVLEVVNDCLP-ELIGGSADLTGSNGTKT-----SQ--MKAISK------SDFSGRYLHYGVREHAMAAAMNGIALHK  435 (673)
Q Consensus       370 ~g~~l~~i~~~~p-~iv~~sADl~~St~~~~-----~~--~~~~~~------~~~p~r~i~~GIaE~~~~~~aaGla~~~  435 (673)
                      .|+++..+.+.+| ++-++++|-..||...-     +.  .....+      ....||.+++ ..|+.+-+++.|..+.|
T Consensus         4 lg~~l~dv~~~Np~~fRvf~PDEt~SNrL~av~e~t~r~w~~~~~~~~~~~~~~~~GrV~e~-LSEh~~eG~leGY~LtG   82 (179)
T pfam03894         4 LGKYLRDVVKLNDTNFRIFGPDETMSNRLWAVFEVTKRQWMMEILPPNDEELSADGGRVDEQ-LSEHLCEGWLEGYLLTG   82 (179)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHCC
T ss_conf             78999999996875463148872100010899987576101244787753326788504566-23999999999887507


Q ss_pred             CCCCEECCCHHHH---HHHHHH----HHHHHHH--H---CCCEEECCCCCCCCCCCCCHHHH--CCCCCHHHHHCC-CCE
Q ss_conf             8762200100355---530012----4541111--0---00013024543333333310100--022210111012-211
Q gi|254780655|r  436 GLAPYSGTFMVFS---DYSRPA----IRLASLM--G---IRVIHVLTHDSIGLGEDGPTHQP--VEHLAALRAIPD-LLV  500 (673)
Q Consensus       436 g~~p~~~tf~~F~---~~~~~~----ir~~al~--~---~~v~~v~th~gi~~G~DGpTHq~--iedia~lr~iPn-l~v  500 (673)
                      + ..+.++|-.|.   +-|..|    +|.+.-.  +   ..+.++.|--.-.-+.+|-|||-  +-| .++.-.|+ .+|
T Consensus        83 r-hglf~SYEAF~~iv~sM~~Q~~Kwl~~~~e~~wR~~~~Sln~l~TS~~WrqdhNg~SHQdPgf~~-~~~~k~~~~~Rv  160 (179)
T pfam03894        83 R-HGIFASYEAFLHIVDSMLNQHAKWLKATREIPWRKDISSLNYLTSSTVWRQDHNGFSHQDPGFLT-VLLNKKPDVVRV  160 (179)
T ss_pred             C-CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEHHHHHCCCCCCCCCCCCHHHH-HHHHCCCCEEEE
T ss_conf             7-66531099999999999999999999977377888875332200002331466877667962999-998538880578


Q ss_pred             EEECCHHHHHHHHHHHHC
Q ss_conf             211201245777765202
Q gi|254780655|r  501 LRPADSIETLECWQVALK  518 (673)
Q Consensus       501 ~~P~d~~E~~~~~~~al~  518 (673)
                      +-|.|++.+..++..++.
T Consensus       161 ylP~DaN~lLa~~~~clr  178 (179)
T pfam03894       161 YLPPDANTLLAVFDRCLQ  178 (179)
T ss_pred             ECCCCCCHHHHHHHHHHC
T ss_conf             889970549999999974


No 138
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=97.27  E-value=0.0035  Score=42.10  Aligned_cols=119  Identities=20%  Similarity=0.206  Sum_probs=77.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC-----CCCCC
Q ss_conf             6314799999999999985342688767845999843621143445578876522022330699962763-----22322
Q gi|254780655|r  131 PLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGI-----SIDGP  205 (673)
Q Consensus       131 ~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~-----si~~~  205 (673)
                      ..+-..+.|.|+..|.|.++.       |-+|+++-|||... ..-+-++..|...+.|-+++++||.-+     |-|+.
T Consensus        68 ~f~~aaa~a~Gi~~a~k~~~~-------~~~Vv~~~GDG~~~-dIG~~~l~ha~~Rn~~i~~iv~DNe~Y~nTGgQ~S~a  139 (298)
T PRK11865         68 AFENAAAVASGIERAVKALGK-------KVNVVAFGGDGGTA-DIGFQALSGAMERGHNIVYIMYDNEAYMNTGIQRSGS  139 (298)
T ss_pred             HHCCCHHHHHHHHHHHHHHCC-------CEEEEEEECCCHHH-HHHHHHHHHHHHCCCCEEEEEECCEEEECCCCCCCCC
T ss_conf             320336789999999998457-------80799995685265-4217889999982998599998471210368866889


Q ss_pred             CCC-----------------CCCCCHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHHCCCCHHHHHCCC
Q ss_conf             355-----------------678217998864144444-4444406788888887511022102220133
Q gi|254780655|r  206 ISL-----------------ADSTDQYARFRASGWNTL-SVNGHDHHAITSTLRKAQLSDKPTMIACETV  257 (673)
Q Consensus       206 ~~~-----------------~~~~~~~~~~~a~Gw~~~-~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T~  257 (673)
                      |..                 ...-|+.....++|-.+. .+---+...+.+.+++|...+.|++|++.+.
T Consensus       140 Tp~Ga~t~ttp~Gk~~~g~~~~kkdl~~ia~a~g~~YVA~~s~~~~~~l~~~i~kA~~~~G~s~i~v~sP  209 (298)
T PRK11865        140 TPFGASTTTSPAGKYSRGEDRPKKDMPLIMAAHGIPYVATASIGYPEDFMKKVKKAAEVDGPAYIQVLQP  209 (298)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             9786531037898666666668768999999829988999825799999999999980899879999788


No 139
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=97.24  E-value=0.0033  Score=42.28  Aligned_cols=42  Identities=14%  Similarity=0.217  Sum_probs=21.6

Q ss_pred             CHHHHHHHCC-CCCCCCCCCCH-HHHHHHHHHHHHCCCCHHHHH
Q ss_conf             1799886414-44444444406-788888887511022102220
Q gi|254780655|r  213 DQYARFRASG-WNTLSVNGHDH-HAITSTLRKAQLSDKPTMIAC  254 (673)
Q Consensus       213 ~~~~~~~a~G-w~~~~vdG~d~-~~i~~a~~~ak~~~kP~~I~~  254 (673)
                      |+..-|+.+- |.+.--+..++ +.+.+|++.|....+|++|..
T Consensus       118 d~~~~~~~vtK~~~~v~~~~~~~~~i~rA~~~A~~~rGPV~i~i  161 (589)
T PRK07525        118 EQMPMFQEMTKYQEEVRDPSRMAEVLNRVFDKAKRESGPAQINI  161 (589)
T ss_pred             CHHHHHHHHHCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             29888656611689938834569999999999983899869967


No 140
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=97.05  E-value=0.012  Score=38.21  Aligned_cols=115  Identities=22%  Similarity=0.211  Sum_probs=51.0

Q ss_pred             CHHHCCCCCCCHHHH---HHHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEE-CCCCCCCCC------
Q ss_conf             001003257620023---56787998728876220010--035553001245411110000130-245433333------
Q gi|254780655|r  410 FSGRYLHYGVREHAM---AAAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHV-LTHDSIGLG------  477 (673)
Q Consensus       410 ~p~r~i~~GIaE~~~---~~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v-~th~gi~~G------  477 (673)
                      .|++|+..+-  ..|   +..|.|.++...-+++++.-  ..|+- .-..+-.+.-.++|++++ +..+|.+.-      
T Consensus       388 ~~~~~~~~~~--G~mG~~lpaAiGaalA~p~~~vv~i~GDGsf~m-~~~EL~Ta~r~~lpi~ivV~NN~~yg~i~~~~~~  464 (521)
T PRK07092        388 RQGSFYTMAS--GGLGYGLPAAVGVALAQPGRRVIGLIGDGSANY-SIQALWSAAQLKLPVTFVILNNGRYGALRWFAPV  464 (521)
T ss_pred             CCCCEEECCC--CCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHH-HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHH
T ss_conf             9983785577--764432689999998399984999984459860-1999999999688948999978712799999998


Q ss_pred             ---CCCC-HHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             ---3331-01000222101110122112112012457777652025678349995
Q gi|254780655|r  478 ---EDGP-THQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSL  528 (673)
Q Consensus       478 ---~DGp-THq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~  528 (673)
                         .+.+ |.-+--|.+.+----|+.-++..+..|+..+++.|++. ++|++|-.
T Consensus       465 ~~~~~~~~~~l~~~df~~iA~a~G~~g~~V~t~~eL~~al~~A~~~-~gP~lIeV  518 (521)
T PRK07092        465 FGVRDVPGLDLPGLDFVALARGYGCEAVRVSDAAELADALARALAA-DRPVLVEV  518 (521)
T ss_pred             HCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHC-CCCEEEEE
T ss_conf             4689977674999999999997799799979999999999999838-99789999


No 141
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=97.03  E-value=0.0085  Score=39.29  Aligned_cols=25  Identities=12%  Similarity=0.191  Sum_probs=12.7

Q ss_pred             CCCH-HHHHHHHHHHHHC-CCCHHHHH
Q ss_conf             4406-7888888875110-22102220
Q gi|254780655|r  230 GHDH-HAITSTLRKAQLS-DKPTMIAC  254 (673)
Q Consensus       230 G~d~-~~i~~a~~~ak~~-~kP~~I~~  254 (673)
                      -.++ +.+.+|++.|... .+|++|..
T Consensus       135 ~~~~~~~l~~A~~~A~~grpGPV~l~i  161 (574)
T PRK07979        135 TEDIPQVLKKAFWLAASGRPGPVVVDL  161 (574)
T ss_pred             CCCCHHHHHHHHHHHHCCCCCCEEECC
T ss_conf             455789999999998538996556257


No 142
>pfam09363 XFP_C XFP C-terminal domain. Bacterial enzyme splits fructose-6-P and/or xylulose-5-P with the aid of inorganic phosphate into either acetyl-P and erythrose-4-P and/or acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22.
Probab=96.98  E-value=0.037  Score=34.69  Aligned_cols=130  Identities=14%  Similarity=0.108  Sum_probs=85.7

Q ss_pred             CCCCCCCCCCEE--EEE---CCCCCEEEEECCHHH-HHHHHHHHHHHHC--CCCEEEEECCCCCHHCC---C----CHHH
Q ss_conf             532212347379--985---699729999526889-9999999999973--99439985746581000---8----6889
Q gi|254780655|r  541 ESNNLCALGAYD--YIS---TPNAQVTIFSSGSEL-KIAVEACEILSSR--NISTRVVSVPCFELFFE---Q----SDSY  605 (673)
Q Consensus       541 ~~~~~~~~G~~~--~~~---~~~~dv~iia~G~~v-~~al~aa~~L~~~--Gi~~~Vi~~~s~k~ld~---~----~~~~  605 (673)
                      +....+..|..+  +..   .+.+||++.++|... .+++.|+.+|+++  .+++||||+--+-.|..   .    +++.
T Consensus        12 eA~~hc~~G~~iW~wAS~d~g~ePDVVlA~aGd~pT~E~LAA~~lLr~~~P~lkiR~VNVvDLm~L~~~~~hphgLsd~~   91 (203)
T pfam09363        12 EAIAHCTKGLGIWDWASNDDGEEPDVVMACAGDVPTLETLAAVDLLREHFPDLKIRVVNVVDLMKLQPPSEHPHGLSDRE   91 (203)
T ss_pred             HHHHHHHCCCEEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEHHHHCCCCCCCCCCCHHH
T ss_conf             99999975870897434799999999998178721199999999999869875699999767132178888998899789


Q ss_pred             HHHHCCCCCEEEEECCCCHHHHHHHH-CC-CCCEEEECCCCCCCC---HHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             99643679779997286027899984-57-981898357767688---8899998099989999999998
Q gi|254780655|r  606 RAQIIGSSPIKIAIEAGLRQGWDAFI-GS-DGSFIGMQGFGASGS---CDLLYQHFGINAIAIVDMVERK  670 (673)
Q Consensus       606 ~~~il~~~~~~vtiE~g~~~g~~~~~-~~-~~~~igid~Fg~sg~---~~el~~~~Gld~~~I~~~i~~~  670 (673)
                      ..+++...+++|.-=.|...-+.+++ +. +...+-|.+|-+.|+   +=++.-.-++|-=+++..+.+.
T Consensus        92 Fd~lFT~DkPViF~fHGYp~lI~~L~~~R~n~~n~hV~GY~EeGttTTPFDM~v~N~~dRfhLa~dai~~  161 (203)
T pfam09363        92 FDSLFTTDKPVIFAFHGYPWLIHRLTYRRTNHHNLHVRGYKEEGTTTTPFDMRVLNELDRFHLAIDAIDR  161 (203)
T ss_pred             HHHHCCCCCCEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHCCCCHHHHHHHHHHH
T ss_conf             9975679997799817988899998557899884578710017887871678877076689999999996


No 143
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase; InterPro: IPR011895   The oxidative decarboxylation of pyruvate to acetyl-CoA, a central step in energy metabolism, can occur by two different mechanisms . In mitochondria and aerobic bacteria this reaction is catalysed by the multienzyme complex pyruvate dehydrogenase using NAD as electron acceptor. In anaerobic organisms, however, this reaction is reversibly catalysed by a single enzyme using either ferrodoxin or flavodoxin as the electron acceptor.   Pyruvate:ferrodoxin/flavodoxin reductases (PFORs) in this entry occur in both obligately and facultatively anaerobic bacteria and also some eukaryotic microorganisms. These proteins are single-chain enzymes containing a thiamin pyrophosphate cofactor for the cleavage of carbon-carbon bonds next to a carbonyl group, and iron-sulphur clusters for electron transfer. The Desulfovibrio africanus enzyme is currently the only PFOR whose three dimensional structure is known , . It is a homodimer where each subunit contains one thiamin pyrophosphate cofactor and two ferrodoxin-like 4Fe-S clusters and an atypical 4Fe-S cluster. Each monomer is composed of seven domains - domains I, II and VI make intersubunit contacts, while domains III, IV and V are located at the suface of the dimer, and domain VII forms a long arm extending over the other subunit. The cofactor is bound at the interface of domains I and VI and is proximal to the atypical 4Fe-S bound by domain VI, while the ferrodoxin-like 4Fe-S clusters are bound by domain V. Comparison of this enzyme with the multi-chain PFORs shows a correspondance between the domains in this enzyme and the subunits of the multi-chain enzymes.; GO: 0005506 iron ion binding, 0016903 oxidoreductase activity acting on the aldehyde or oxo group of donors, 0006118 electron transport.
Probab=96.97  E-value=0.004  Score=41.68  Aligned_cols=61  Identities=21%  Similarity=0.271  Sum_probs=42.4

Q ss_pred             CCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCCCCCEEEEE
Q ss_conf             6997299995268899999999999973994399857465810008688999643679779997
Q gi|254780655|r  556 TPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKIAI  619 (673)
Q Consensus       556 ~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vti  619 (673)
                      .++.+=+||+-||..+.+.|+-+-|+++|-++.+|.||=.+||+.   ++-.+-|+.+...|+|
T Consensus       262 apdAE~vIi~MGSvaeTieEtvdyL~~kG~KvGllkVrLYRPF~~---~~F~~~lP~svK~IAV  322 (1194)
T TIGR02176       262 APDAERVIIAMGSVAETIEETVDYLRSKGEKVGLLKVRLYRPFSA---ETFLAALPKSVKRIAV  322 (1194)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCH---HHHHHHCCCCCCEEEE
T ss_conf             702031044058566789999999972893276888751279858---9999842411012221


No 144
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=96.89  E-value=0.0055  Score=40.70  Aligned_cols=32  Identities=16%  Similarity=0.065  Sum_probs=15.8

Q ss_pred             CCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             972999952688999999999999739943998
Q gi|254780655|r  558 NAQVTIFSSGSELKIAVEACEILSSRNISTRVV  590 (673)
Q Consensus       558 ~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi  590 (673)
                      ..-|.|++=|+....+-|-. ...++++.+.+|
T Consensus       466 r~Vv~i~GDGsf~mt~qEL~-Tavr~~lpi~iv  497 (612)
T PRK07789        466 KEVWAIDGDGCFQMTNQELA-TCAIEGIPIKVA  497 (612)
T ss_pred             CCEEEEECCHHHHHHHHHHH-HHHHHCCCCEEE
T ss_conf             93899985368633299999-999968994899


No 145
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=96.88  E-value=0.0033  Score=42.28  Aligned_cols=119  Identities=22%  Similarity=0.218  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCEEEE--EECCCCCC-CHHHHHHHHHHHHHCC--CCEEEEEECCCCCCCCCCCCC--
Q ss_conf             9999999999985342688767845999--84362114-3445578876522022--330699962763223223556--
Q gi|254780655|r  137 ANAVGMAIAERKLREEFGDVLIDHYTYV--LVGDGCLM-EGISQEAISFAGHLGL--SKLIVLWDNNGISIDGPISLA--  209 (673)
Q Consensus       137 s~a~G~A~a~k~~~~~~~~~~~d~~v~~--iiGDG~l~-eG~~~EAl~~A~~~~l--~nli~i~d~N~~si~~~~~~~--  209 (673)
                      +.+.|.+.|.....+...    ..++.+  +-||++.. .|+.+|.++++...+-  .-.|=|+=||++.-.++....  
T Consensus       120 PVv~G~~RAkQ~~~~~~~----~~kvlpiliHGDAAfaGQGvv~Etl~ls~l~gy~~GGtiHiivNNQIGFTT~p~~~Rs  195 (265)
T cd02016         120 PVVMGKTRAKQDYRGDGE----RDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRS  195 (265)
T ss_pred             CEECCHHHHHHHHHCCCC----CCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCEEECCCCHHHCC
T ss_conf             774440565677644877----6637899996661114565899876663389985476699998074100258134045


Q ss_pred             --CCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH----HHCCCCHHHHHCCCCCCCC
Q ss_conf             --7821799886414444444444067888888875----1102210222013345557
Q gi|254780655|r  210 --DSTDQYARFRASGWNTLSVNGHDHHAITSTLRKA----QLSDKPTMIACETVIGFGS  262 (673)
Q Consensus       210 --~~~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~a----k~~~kP~~I~~~T~kG~G~  262 (673)
                        ...|+++   .++-.++.|||.|++++..|.+-|    ++-.|-++|-.-...-+|.
T Consensus       196 s~Y~tDiaK---~~~~Pi~HVNgddpeav~~a~~lA~~yR~~F~kDvvIDlvcYRr~GH  251 (265)
T cd02016         196 SPYCTDVAK---MIGAPIFHVNGDDPEAVVRATRLALEYRQKFKKDVVIDLVCYRRHGH  251 (265)
T ss_pred             CCCCHHHHH---HHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC
T ss_conf             764002688---86798899768998999999999999999869987999787345687


No 146
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=96.87  E-value=0.0041  Score=41.64  Aligned_cols=42  Identities=21%  Similarity=0.258  Sum_probs=19.0

Q ss_pred             CCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             34737998569972999952688999999999999739943998
Q gi|254780655|r  547 ALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVV  590 (673)
Q Consensus       547 ~~G~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi  590 (673)
                      .+|+. +.+.+.+-++|++=|+.....-| -....++++.+.+|
T Consensus       427 AiGA~-lA~p~r~Vv~i~GDG~f~m~~qE-L~Ta~~~~lpv~iv  468 (566)
T PRK07282        427 AIGAK-IANPDKEVILFVGDGGFQMTNQE-LAILNIYKVPIKVV  468 (566)
T ss_pred             HHHHH-HHCCCCCEEEEECCCHHHCCHHH-HHHHHHHCCCCEEE
T ss_conf             99999-82899968999668055414899-99999958996899


No 147
>TIGR02418 acolac_catab acetolactate synthase, catabolic; InterPro: IPR012782    Acetolactate synthase is a thiamin pyrophosphate-dependent enzyme that combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. It exists in two distinct forms that have different properties, though they are clearly related , . The biosynthetic form, found in plants, fungi and bacteria, is involved in the biosynthesis of branched-chain amino acids and contains non-catalytic FAD. The catabolic form is found only in some bacteria, participates in butanediol fermentation, and does not contain FAD.   This entry represents the catabolic form of acetolactate synthase, generally found in species that posses acetolactate decarboxylase, which is often encoded in the same operon. The enzyme is thought to be a homotetramer, though this has not conclusively been shown. Each monomer consists of three distinct domains, designated, starting from the N-terminus, as alpha, beta and gamma . The core of the alpha and gamma domains is a six-stranded parallel beta sheet surrounded by alpha helices, while the the beta domain forms a double Rossman fold. The thiamin pyrophosphate cofactor has an unusual conformation that has not been seen in other enzymes using this cofactor, including the biosynthetic form of acetolactate synthase. The active site is located in a funnel at the dimer interface, bordered by residues from all three domains.; GO: 0000287 magnesium ion binding, 0003984 acetolactate synthase activity, 0030976 thiamin pyrophosphate binding, 0050660 FAD binding.
Probab=96.86  E-value=0.0043  Score=41.47  Aligned_cols=23  Identities=43%  Similarity=0.590  Sum_probs=11.5

Q ss_pred             CHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             688999999999999739943998574
Q gi|254780655|r  567 GSELKIAVEACEILSSRNISTRVVSVP  593 (673)
Q Consensus       567 G~~v~~al~aa~~L~~~Gi~~~Vi~~~  593 (673)
                      |.-+++|+.|+ .|+-   +.+|||+.
T Consensus       421 GVALPWAI~Aa-LlrP---~~KVVSVS  443 (553)
T TIGR02418       421 GVALPWAIGAA-LLRP---NTKVVSVS  443 (553)
T ss_pred             HHHHHHHHHHH-HHCC---CCEEEEEE
T ss_conf             11218999999-7388---97589987


No 148
>PRK08199 acetolactate synthase 2 catalytic subunit; Validated
Probab=96.85  E-value=0.0043  Score=41.46  Aligned_cols=100  Identities=15%  Similarity=0.111  Sum_probs=50.0

Q ss_pred             HHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCCC-------CCCCCHH---HHCCCCCHHH
Q ss_conf             787998728876220010--0355530012454111100001302-4543333-------3333101---0002221011
Q gi|254780655|r  427 AMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHVL-THDSIGL-------GEDGPTH---QPVEHLAALR  493 (673)
Q Consensus       427 ~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~~-------G~DGpTH---q~iedia~lr  493 (673)
                      .|.|.++...-+|+++.-  ..|. +.-..+-.+...++|++++. ..+|.+.       ...|..+   .+--|.+.+-
T Consensus       417 aAiGa~la~p~r~Vv~i~GDG~f~-m~~~eL~Ta~~~~lpv~ivV~NN~~yg~i~~~q~~~~~~r~~~~~l~~~df~~lA  495 (553)
T PRK08199        417 AAIAAKLLYPERTVVAFAGDGCFL-MNGQELATAVQYGLPIIVIVVNNGMYGTIRMHQEREYPGRVSGTDLTNPDFAALA  495 (553)
T ss_pred             HHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf             999999829998189998862765-4199999999978796899996895179999999746996455869998999999


Q ss_pred             HHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             10122112112012457777652025678349995
Q gi|254780655|r  494 AIPDLLVLRPADSIETLECWQVALKEKNRPSVLSL  528 (673)
Q Consensus       494 ~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~  528 (673)
                      ---+..-++..+..|+..+++.|+.. ++|+.|-.
T Consensus       496 ~a~G~~~~~V~~~~el~~al~~a~~~-~gp~lIeV  529 (553)
T PRK08199        496 RAYGGHGERVERTEDFAPAFERALAS-GKPALIEI  529 (553)
T ss_pred             HHCCCEEEEECCHHHHHHHHHHHHHC-CCCEEEEE
T ss_conf             97799799969999999999999858-99599999


No 149
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=96.80  E-value=0.0095  Score=38.97  Aligned_cols=111  Identities=16%  Similarity=0.097  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC-CCHHHHHHHHHHHHHCCCCEEEEEECCCCC-----CCCCC
Q ss_conf             147999999999999853426887678459998436211-434455788765220223306999627632-----23223
Q gi|254780655|r  133 GQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCL-MEGISQEAISFAGHLGLSKLIVLWDNNGIS-----IDGPI  206 (673)
Q Consensus       133 G~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l-~eG~~~EAl~~A~~~~l~nli~i~d~N~~s-----i~~~~  206 (673)
                      |-.++.|.|+.+|..           |-.|+++-|||++ ..|.  .-+.+|+..+.|-.++++||+-+.     .|..+
T Consensus        71 GRala~AtGiK~AnP-----------dl~Viv~~GDGD~~aIGg--nH~iHAaRRN~dit~Iv~NN~iYGmTgGQ~SPTT  137 (281)
T PRK09628         71 GRAVAYATGIKLANP-----------SKHVIVVSGDGDGLAIGG--NHTIHGCRRNIDLNHILINNFIYGLTNSQTSPTT  137 (281)
T ss_pred             CCHHHHHHHHHHHCC-----------CCEEEEEECCCHHHHCHH--HHHHHHHHHCCCCEEEEECCEEEECCCCCCCCCC
T ss_conf             250888999998689-----------976999815740420308--8999999808992899987772303788569899


Q ss_pred             CCC------------CCCCHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf             556------------78217998864144444-444440678888888751102210222013
Q gi|254780655|r  207 SLA------------DSTDQYARFRASGWNTL-SVNGHDHHAITSTLRKAQLSDKPTMIACET  256 (673)
Q Consensus       207 ~~~------------~~~~~~~~~~a~Gw~~~-~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T  256 (673)
                      ...            .+-|..+...+.|-.++ +.--.|.+.+.+.+++|...+.+++|++.+
T Consensus       138 p~G~~T~TtP~G~~e~p~d~~~la~aaGatfVAR~~~~~~~~l~~~ik~Ai~hkGfS~Vevls  200 (281)
T PRK09628        138 PKGMWTVTAQWGNIDPNFDACKLATAAGASFVARESVIDPKKLEKLLVKGFSHKGFSFFDVFS  200 (281)
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             998756668999878996999999876997899870489999999999996599967999956


No 150
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=96.76  E-value=0.0077  Score=39.64  Aligned_cols=32  Identities=16%  Similarity=0.061  Sum_probs=17.1

Q ss_pred             CCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             972999952688999999999999739943998
Q gi|254780655|r  558 NAQVTIFSSGSELKIAVEACEILSSRNISTRVV  590 (673)
Q Consensus       558 ~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi  590 (673)
                      ..-|.|++=|+.....-+- ....++++.+.+|
T Consensus       434 r~vv~i~GDG~f~m~~~EL-~Ta~r~~lpv~iv  465 (560)
T PRK08527        434 KVVINFTGDGSILMNIQEL-MTAVEYGIPVINI  465 (560)
T ss_pred             CCEEEEECCHHHHHHHHHH-HHHHHHCCCCEEE
T ss_conf             9689997817986659999-9999968895899


No 151
>PRK07064 hypothetical protein; Provisional
Probab=96.74  E-value=0.0056  Score=40.64  Aligned_cols=33  Identities=15%  Similarity=0.109  Sum_probs=16.3

Q ss_pred             CCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             9972999952688999999999999739943998
Q gi|254780655|r  557 PNAQVTIFSSGSELKIAVEACEILSSRNISTRVV  590 (673)
Q Consensus       557 ~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi  590 (673)
                      +..-+.|++=|+....+.+. ..+.++++.+.+|
T Consensus       423 ~~~vv~i~GDGsf~m~~~eL-~Ta~r~~lpi~iv  455 (544)
T PRK07064        423 GRKTVCLVGDGGLMLNLGEL-ATAVQENANMVIV  455 (544)
T ss_pred             CCCEEEEECHHHHHHHHHHH-HHHHHHCCCCEEE
T ss_conf             99789998517977659999-9999968690899


No 152
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=96.73  E-value=0.019  Score=36.81  Aligned_cols=119  Identities=17%  Similarity=0.200  Sum_probs=69.0

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC-CHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             987306888631479999999999998534268876784599984362114-3445578876522022330699962763
Q gi|254780655|r  122 CAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLM-EGISQEAISFAGHLGLSKLIVLWDNNGI  200 (673)
Q Consensus       122 ~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~-eG~~~EAl~~A~~~~l~nli~i~d~N~~  200 (673)
                      +.+++...   |-.++.|.|+.+|..           |-.||++-|||+.. .|  ..-+.+|...++|-.++++||.-+
T Consensus        63 ~~~~ht~H---GRa~~~AtGiK~anP-----------dl~Viv~~GDGD~~~IG--gnH~iHA~rRN~dit~iv~nN~iY  126 (280)
T PRK11867         63 TYGFHTIH---GRALAFATGLKLANP-----------DLTVIVVTGDGDALAIG--GNHFIHALRRNIDITIILFNNQIY  126 (280)
T ss_pred             ECCCCCCC---CCCHHHHHHHHHHCC-----------CCEEEEEECCCCHHHCH--HHHHHHHHHHCCCCEEEEECCEEE
T ss_conf             36713245---760789999987689-----------97699992266032023--888999998089818999888201


Q ss_pred             CC-----CCCCCCC------------CCCCHHHHHHHCCCCCCC-CCCCCHHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf             22-----3223556------------782179988641444444-44440678888888751102210222013
Q gi|254780655|r  201 SI-----DGPISLA------------DSTDQYARFRASGWNTLS-VNGHDHHAITSTLRKAQLSDKPTMIACET  256 (673)
Q Consensus       201 si-----~~~~~~~------------~~~~~~~~~~a~Gw~~~~-vdG~d~~~i~~a~~~ak~~~kP~~I~~~T  256 (673)
                      .+     |..+...            .+-|..+...+.|-.++. .-.-|.+.+.+.+++|-..+.+++|++..
T Consensus       127 GlT~GQ~SpTt~~G~~t~ttP~G~~~~p~n~~~la~~aGatfVAR~~~~~~~~l~~~ik~A~~hkGfs~Vevls  200 (280)
T PRK11867        127 GLTKGQYSPTSPVGFVTKTTPYGSIDPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAINHKGFSFVEILQ  200 (280)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             02578558899998876778899887997999999977993798640278999999999996699967999967


No 153
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=96.72  E-value=0.025  Score=35.93  Aligned_cols=33  Identities=18%  Similarity=0.112  Sum_probs=15.7

Q ss_pred             CCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             9729999526889999999999997399439985
Q gi|254780655|r  558 NAQVTIFSSGSELKIAVEACEILSSRNISTRVVS  591 (673)
Q Consensus       558 ~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~  591 (673)
                      .+-|.|++=|+.....-| -....++++.+.||-
T Consensus       435 ~~Vv~i~GDGsf~m~~~E-L~Ta~r~~lpi~ivV  467 (554)
T TIGR03254       435 KPVVALEGDSAFGFSGME-VETICRYNLPVCVVI  467 (554)
T ss_pred             CEEEEEECCCCCCCCHHH-HHHHHHHCCCCEEEE
T ss_conf             818999758510304899-999999689958999


No 154
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=96.71  E-value=0.011  Score=38.41  Aligned_cols=111  Identities=21%  Similarity=0.213  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC-CCCCHHHHHHHHHHHHHCCCCEEEEEECCCC-----CCCCCC
Q ss_conf             1479999999999998534268876784599984362-1143445578876522022330699962763-----223223
Q gi|254780655|r  133 GQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDG-CLMEGISQEAISFAGHLGLSKLIVLWDNNGI-----SIDGPI  206 (673)
Q Consensus       133 G~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG-~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~-----si~~~~  206 (673)
                      |-.++.|.|+.+|.+.|           .||++-||| ....|  .-.+.++...+.|-.++++||.-+     |.|+.+
T Consensus        73 gra~a~atGik~A~~~l-----------~Viv~gGDG~~~dIG--~~~l~ha~~Rn~dit~iv~DNevYgnTggQ~S~tT  139 (294)
T COG1013          73 GRAAAVATGIKLANPAL-----------SVIVIGGDGDAYDIG--GNHLIHALRRNHDITYIVVDNEVYGNTGGQASPTT  139 (294)
T ss_pred             CCCHHHHHHHHHHHHCC-----------EEEEEECCCHHHHCC--HHHHHHHHHCCCCEEEEEECCEECCCCCCCCCCCC
T ss_conf             56234577799751077-----------499990560775410--16778999707985999977700456787358898


Q ss_pred             CC------------C-CCCCHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf             55------------6-78217998864144444-444440678888888751102210222013
Q gi|254780655|r  207 SL------------A-DSTDQYARFRASGWNTL-SVNGHDHHAITSTLRKAQLSDKPTMIACET  256 (673)
Q Consensus       207 ~~------------~-~~~~~~~~~~a~Gw~~~-~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T  256 (673)
                      ..            . ..-|+....-++|-.+. ++-=-++..+.+.+.+|.....|++|++.+
T Consensus       140 p~G~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~~A~~~~Gps~I~v~s  203 (294)
T COG1013         140 PKGAKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAEHKGPSFIDVLS  203 (294)
T ss_pred             CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             6887603368987767877999999876997699970359899999999998567976999966


No 155
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=96.69  E-value=0.0054  Score=40.75  Aligned_cols=26  Identities=19%  Similarity=0.248  Sum_probs=14.2

Q ss_pred             CCCCH-HHHHHHHHHHHHC-CCCHHHHH
Q ss_conf             44406-7888888875110-22102220
Q gi|254780655|r  229 NGHDH-HAITSTLRKAQLS-DKPTMIAC  254 (673)
Q Consensus       229 dG~d~-~~i~~a~~~ak~~-~kP~~I~~  254 (673)
                      +.+++ +.+.+|++.|... .+|++|..
T Consensus       134 ~~~~i~~~l~~A~~~A~~~rpGPV~i~i  161 (574)
T PRK06882        134 KAEDIPSTIKKAFYIASTGRPGPVVIDI  161 (574)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf             9999999999999998638998779982


No 156
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=96.68  E-value=0.007  Score=39.90  Aligned_cols=32  Identities=16%  Similarity=0.198  Sum_probs=16.4

Q ss_pred             CCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             972999952688999999999999739943998
Q gi|254780655|r  558 NAQVTIFSSGSELKIAVEACEILSSRNISTRVV  590 (673)
Q Consensus       558 ~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi  590 (673)
                      ..-|.|++=|+....+-+- ....++++.+.+|
T Consensus       443 r~Vv~i~GDG~f~m~~qEL-~Ta~r~~lpv~iv  474 (571)
T PRK07710        443 ELVVAIVGDAGFQMTLQEL-SVLKEHSLPVKVF  474 (571)
T ss_pred             CEEEEEECCHHHHCCHHHH-HHHHHHCCCCEEE
T ss_conf             8389997780564369999-9999959993899


No 157
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=96.67  E-value=0.023  Score=36.24  Aligned_cols=42  Identities=14%  Similarity=0.199  Sum_probs=20.4

Q ss_pred             CHHHHHHHC-CCCCCCCCCCCH-HHHHHHHHHHHHC-CCCHHHHH
Q ss_conf             179988641-444444444406-7888888875110-22102220
Q gi|254780655|r  213 DQYARFRAS-GWNTLSVNGHDH-HAITSTLRKAQLS-DKPTMIAC  254 (673)
Q Consensus       213 ~~~~~~~a~-Gw~~~~vdG~d~-~~i~~a~~~ak~~-~kP~~I~~  254 (673)
                      |....|+.. -|....-+..+. +.|.+|++.|... .+|+.|..
T Consensus       127 d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~r~GPV~l~i  171 (581)
T PRK06112        127 DHIALFQSCTKWVRRVDVAERIDDYVDQAFAAACSGRPGPVVLLL  171 (581)
T ss_pred             CHHHHHHHHHCEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf             487776545247887799999999999999999656998879981


No 158
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=96.57  E-value=0.024  Score=36.00  Aligned_cols=119  Identities=16%  Similarity=0.119  Sum_probs=70.8

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC-CCHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             98730688863147999999999999853426887678459998436211-43445578876522022330699962763
Q gi|254780655|r  122 CAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCL-MEGISQEAISFAGHLGLSKLIVLWDNNGI  200 (673)
Q Consensus       122 ~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l-~eG~~~EAl~~A~~~~l~nli~i~d~N~~  200 (673)
                      +.+++...   |-.++.|.|+.+|..           |-.|+++-|||++ .+|.  ..+.+|...+.|-.++++||.-+
T Consensus        62 ~~~~h~lH---GRalp~AtGiK~AnP-----------dL~Viv~~GDGD~~~IG~--nh~ihA~rRN~dit~iv~nN~iY  125 (286)
T PRK11866         62 TYGIHGIH---GRLLPIATGVKWANP-----------KLTVIAYGGDGDGYGIGL--QHLIHAARRNVDITYIVSNNQVY  125 (286)
T ss_pred             CCCEEHHH---CCCHHHHHHHHHHCC-----------CCEEEEEECCCCHHCCHH--HHHHHHHHHCCCCEEEEECCHHH
T ss_conf             26240221---250688999987589-----------977999926873204238--89999998489937999887432


Q ss_pred             C-----CCCCCCCC------------CCCCHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf             2-----23223556------------78217998864144444-444440678888888751102210222013
Q gi|254780655|r  201 S-----IDGPISLA------------DSTDQYARFRASGWNTL-SVNGHDHHAITSTLRKAQLSDKPTMIACET  256 (673)
Q Consensus       201 s-----i~~~~~~~------------~~~~~~~~~~a~Gw~~~-~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T  256 (673)
                      .     .|+.+...            .+-|......+.|-.++ +.--.|.+.+.+.+++|...+.+++|++..
T Consensus       126 GlTgGQ~SpTTp~G~~T~ttP~G~~~~p~np~~la~a~gatfVAR~~~~~~~~l~~~ik~Ai~hkGfs~VeVls  199 (286)
T PRK11866        126 GLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKKAIKHKGFSFIDVLS  199 (286)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             14789689899998857647999877897999999987998899770479999999999997799967999978


No 159
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=96.55  E-value=0.028  Score=35.54  Aligned_cols=32  Identities=22%  Similarity=0.157  Sum_probs=14.9

Q ss_pred             CCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             972999952688999999999999739943998
Q gi|254780655|r  558 NAQVTIFSSGSELKIAVEACEILSSRNISTRVV  590 (673)
Q Consensus       558 ~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi  590 (673)
                      ..-|.|++=|+.....-|-. ...++++.+.+|
T Consensus       453 r~Vv~i~GDGsf~mt~qEL~-Ta~r~~Lpv~iv  484 (615)
T PRK07418        453 EQVICIAGDASFLMNIQELG-TLAQYGIPVKTV  484 (615)
T ss_pred             CCEEEEECCHHHHHHHHHHH-HHHHHCCCCEEE
T ss_conf             96899984438766499999-999968996899


No 160
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=96.54  E-value=0.0051  Score=40.91  Aligned_cols=42  Identities=12%  Similarity=0.142  Sum_probs=21.8

Q ss_pred             CHHHHHHHCC-CCCCCCCCCCH-HHHHHHHHHHHHCCCCHHHHH
Q ss_conf             1799886414-44444444406-788888887511022102220
Q gi|254780655|r  213 DQYARFRASG-WNTLSVNGHDH-HAITSTLRKAQLSDKPTMIAC  254 (673)
Q Consensus       213 ~~~~~~~a~G-w~~~~vdG~d~-~~i~~a~~~ak~~~kP~~I~~  254 (673)
                      |+...|+.+- |.+.--+..++ +.+.+|++.|....+|++|..
T Consensus       114 d~~~~~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~rGPV~l~i  157 (579)
T TIGR03457       114 DQLPMFQEFTKYQGHVRHPSRMAEVLNRCFERAWREMGPAQLNI  157 (579)
T ss_pred             CHHHHHHHHEEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEECC
T ss_conf             18888555524689969999999999999999972899779767


No 161
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=96.51  E-value=0.0072  Score=39.84  Aligned_cols=33  Identities=12%  Similarity=0.261  Sum_probs=16.7

Q ss_pred             CCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             9972999952688999999999999739943998
Q gi|254780655|r  557 PNAQVTIFSSGSELKIAVEACEILSSRNISTRVV  590 (673)
Q Consensus       557 ~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi  590 (673)
                      +..-+.|++=|+......| -....++++.+.+|
T Consensus       419 ~r~Vv~i~GDGsf~m~~~E-L~Ta~r~~lpv~iv  451 (548)
T PRK08978        419 DDTVICVSGDGSFMMNVQE-LGTIKRKQLPVKIV  451 (548)
T ss_pred             CCCEEEEECCHHHHHHHHH-HHHHHHHCCCCEEE
T ss_conf             9988999895076452999-99999958995899


No 162
>PRK05858 hypothetical protein; Provisional
Probab=96.51  E-value=0.0061  Score=40.33  Aligned_cols=21  Identities=10%  Similarity=0.153  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHC-CCCHHHHH
Q ss_conf             7888888875110-22102220
Q gi|254780655|r  234 HAITSTLRKAQLS-DKPTMIAC  254 (673)
Q Consensus       234 ~~i~~a~~~ak~~-~kP~~I~~  254 (673)
                      ..|.+|++.|... .+|+.|..
T Consensus       142 ~~l~~A~~~A~~~~~GPV~l~i  163 (543)
T PRK05858        142 RLVDQALQAAVSAHSGVVFVDF  163 (543)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEE
T ss_conf             9999999998628997399993


No 163
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=96.47  E-value=0.021  Score=36.54  Aligned_cols=112  Identities=21%  Similarity=0.202  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC-----CCCCCCC
Q ss_conf             14799999999999985342688767845999843621143445578876522022330699962763-----2232235
Q gi|254780655|r  133 GQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGI-----SIDGPIS  207 (673)
Q Consensus       133 G~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~-----si~~~~~  207 (673)
                      |-.++.|.|+.+|..           |-+|+++-|||+.. +.-...+.+|...+.|-.++++||.-+     |.|..+.
T Consensus        73 GRa~~~AtGiK~anp-----------dl~Vi~~~GDGd~~-~IG~~hl~ha~rRN~dit~Iv~nN~vYglTgGQ~SpTtp  140 (306)
T PRK05778         73 GRAIAFATGAKLANP-----------DLKVIVVGGDGDLA-SIGGGHFIHAGRRNVDITVIVENNGVYGLTKGQASPTTP  140 (306)
T ss_pred             CCHHHHHHHHHHHCC-----------CCEEEEEECCCCHH-CCCHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCC
T ss_conf             441889989987688-----------98699993576121-131787899998389946999876332336886698999


Q ss_pred             C------------CCCCCHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf             5------------678217998864144444-444440678888888751102210222013
Q gi|254780655|r  208 L------------ADSTDQYARFRASGWNTL-SVNGHDHHAITSTLRKAQLSDKPTMIACET  256 (673)
Q Consensus       208 ~------------~~~~~~~~~~~a~Gw~~~-~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T  256 (673)
                      .            ..+-|......+.|-.+. +.-.-|...+.+.+++|-..+.+++|.+..
T Consensus       141 ~G~~t~ttp~G~~~~p~n~~~la~a~ga~fVAR~~~~~~~~l~~~ik~Ai~hkGfs~i~Vls  202 (306)
T PRK05778        141 RGSKTKTLPYGNIEPPIDPCALALAAGATFVARSFSGDVKQLKELIKKAISHKGFAFIDVLS  202 (306)
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             98746647899867886999999976998699875478899999999996699967999967


No 164
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=96.45  E-value=0.032  Score=35.19  Aligned_cols=32  Identities=19%  Similarity=0.227  Sum_probs=16.3

Q ss_pred             CCCCCCCCCCH-HHHHHHHHHHHHC-CCCHHHHH
Q ss_conf             44444444406-7888888875110-22102220
Q gi|254780655|r  223 WNTLSVNGHDH-HAITSTLRKAQLS-DKPTMIAC  254 (673)
Q Consensus       223 w~~~~vdG~d~-~~i~~a~~~ak~~-~kP~~I~~  254 (673)
                      |.+..-+..++ +.+.+|++.|+.. .+|++|..
T Consensus       145 ~~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~i  178 (587)
T PRK06965        145 HNFLVKDVRDLAETVKKAFYIARTGRPGPVLIDI  178 (587)
T ss_pred             EEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf             0476188999999999999998527996279957


No 165
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=96.42  E-value=0.0066  Score=40.12  Aligned_cols=33  Identities=9%  Similarity=0.164  Sum_probs=17.5

Q ss_pred             CCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             9972999952688999999999999739943998
Q gi|254780655|r  557 PNAQVTIFSSGSELKIAVEACEILSSRNISTRVV  590 (673)
Q Consensus       557 ~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi  590 (673)
                      +..-|.+++=|+....+.+- ....++++.+.+|
T Consensus       437 ~r~Vv~~~GDGsf~m~~~eL-~Ta~r~~lpv~iv  469 (564)
T PRK08155        437 DRKVLCFSGDGSLMMNIQEM-ATAAENQLDVKII  469 (564)
T ss_pred             CCCEEEEECCHHHHHHHHHH-HHHHHHCCCCEEE
T ss_conf             98289997417864309999-9999959790899


No 166
>pfam02776 TPP_enzyme_N Thiamine pyrophosphate enzyme, N-terminal TPP binding domain.
Probab=96.41  E-value=0.008  Score=39.49  Aligned_cols=113  Identities=18%  Similarity=0.139  Sum_probs=69.3

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCEE-CCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHCCCCCHHHHHCC
Q ss_conf             62002356787998728876220-01003555300124541111000013024543333333310100022210111012
Q gi|254780655|r  419 VREHAMAAAMNGIALHKGLAPYS-GTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHLAALRAIPD  497 (673)
Q Consensus       419 IaE~~~~~~aaGla~~~g~~p~~-~tf~~F~~~~~~~ir~~al~~~~v~~v~th~gi~~G~DGpTHq~iedia~lr~iPn  497 (673)
                      .-|++++.+|.|.+.-.|...+| .|...=..-+...|..+-..+.|++++........-..+..||.+++..++|.+-.
T Consensus        46 ~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~~d~~~~~~~~tk  125 (172)
T pfam02776        46 RHEQGAGFAADGYARATGKPGVVLVTSGPGATNALTGLANAYVDSIPVLVISGQVPTSDLGQGAFQEELDQLALFRPVTK  125 (172)
T ss_pred             CCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHCCCCCCHHHHHHHCCCCCEEE
T ss_conf             87799999999999986998799983580688799999999875998499936887776078952000455414566066


Q ss_pred             --CCEEEECC-HHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf             --21121120-12457777652025678349995244
Q gi|254780655|r  498 --LLVLRPAD-SIETLECWQVALKEKNRPSVLSLSRQ  531 (673)
Q Consensus       498 --l~v~~P~d-~~E~~~~~~~al~~~~gP~~ir~~R~  531 (673)
                        ..+-.|.+ ...+..+++.|.....||++|-+|+.
T Consensus       126 ~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~D  162 (172)
T pfam02776       126 WAERVTSPDEIPEALDRAFRTALSGRPGPVYLELPLD  162 (172)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHH
T ss_conf             8888899999999999999998329997799997903


No 167
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=96.40  E-value=0.046  Score=34.03  Aligned_cols=111  Identities=14%  Similarity=0.084  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC-CCC-----CCCC
Q ss_conf             1479999999999998534268876784599984362114344557887652202233069996276-322-----3223
Q gi|254780655|r  133 GQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNG-ISI-----DGPI  206 (673)
Q Consensus       133 G~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~-~si-----~~~~  206 (673)
                      |-.++.|.|+.+|..           |-.|+++-|||++- +.-..-+.+|...+.| +.+|+-||+ +.+     |..+
T Consensus        67 GRalp~AtGiK~anP-----------dL~Viv~~GDGD~~-~IGgnH~iHA~RRN~d-it~Iv~nN~iYGlTkGQ~SPTt  133 (284)
T PRK11869         67 GRAIPAATAVKATNP-----------NLTVIAEGGDGDMY-AEGGNHLIHAIRRNPD-ITVLIHNNQIYGLTKGQASPTT  133 (284)
T ss_pred             CCHHHHHHHHHHHCC-----------CCEEEEEECCCHHH-HHHHHHHHHHHHCCCC-CEEEEECCEECCCCCCCCCCCC
T ss_conf             770788999987689-----------97699981266154-3028889999974898-0899988810011579889899


Q ss_pred             CCC------------CCCCHHHHHHHCCCCCCC-CCCCCHHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf             556------------782179988641444444-44440678888888751102210222013
Q gi|254780655|r  207 SLA------------DSTDQYARFRASGWNTLS-VNGHDHHAITSTLRKAQLSDKPTMIACET  256 (673)
Q Consensus       207 ~~~------------~~~~~~~~~~a~Gw~~~~-vdG~d~~~i~~a~~~ak~~~kP~~I~~~T  256 (673)
                      ...            .+-|..+...+.|-.+.. .---|.+.+.+.+++|...+..++|.+-.
T Consensus       134 ~~G~~T~t~P~G~~e~p~np~~la~a~GatfVAR~~~~~~~~l~~~ik~Ai~hkGfs~VeVls  196 (284)
T PRK11869        134 LKGTKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEIIKEAIKHKGLAIVDIFH  196 (284)
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             998805578899888997999999976997899871289999999999996799817999967


No 168
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=96.35  E-value=0.018  Score=36.99  Aligned_cols=21  Identities=14%  Similarity=0.137  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHC-CCCHHHHH
Q ss_conf             7888888875110-22102220
Q gi|254780655|r  234 HAITSTLRKAQLS-DKPTMIAC  254 (673)
Q Consensus       234 ~~i~~a~~~ak~~-~kP~~I~~  254 (673)
                      ..+.+|++.|... ..|+.|.+
T Consensus       150 ~~v~~A~~~A~~~~pGPV~L~i  171 (572)
T PRK09259        150 IAVARAIRTAVSGRPGGVYLDL  171 (572)
T ss_pred             HHHHHHHHHHHHCCCCCEEEEC
T ss_conf             9999999999757997179955


No 169
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=96.34  E-value=0.027  Score=35.73  Aligned_cols=33  Identities=18%  Similarity=0.207  Sum_probs=17.5

Q ss_pred             CCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             9972999952688999999999999739943998
Q gi|254780655|r  557 PNAQVTIFSSGSELKIAVEACEILSSRNISTRVV  590 (673)
Q Consensus       557 ~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi  590 (673)
                      +..-|+|++=|+......|. ....++++.+.+|
T Consensus       437 dr~Vv~i~GDGsf~m~~qEL-~Tavr~~lpv~iv  469 (586)
T PRK06276        437 DANVIAVTGDGGFLMNSQEL-ATIAEYDIPVIVV  469 (586)
T ss_pred             CCCEEEEECCHHHHHHHHHH-HHHHHHCCCCEEE
T ss_conf             99689998856875509999-9999978894899


No 170
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=96.34  E-value=0.0088  Score=39.19  Aligned_cols=33  Identities=15%  Similarity=0.150  Sum_probs=17.5

Q ss_pred             CCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             9972999952688999999999999739943998
Q gi|254780655|r  557 PNAQVTIFSSGSELKIAVEACEILSSRNISTRVV  590 (673)
Q Consensus       557 ~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi  590 (673)
                      +..-|.|++=|+....+.|. ....++++.+.+|
T Consensus       439 ~r~Vv~i~GDGsf~m~~qEL-~Tavr~~lpv~ii  471 (572)
T PRK08979        439 DETVVCVTGDGSIQMNIQEL-STALQYDIPVKII  471 (572)
T ss_pred             CCCEEEEECCHHHHHHHHHH-HHHHHHCCCCEEE
T ss_conf             99689998827987779999-9999978894899


No 171
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=96.25  E-value=0.016  Score=37.28  Aligned_cols=32  Identities=9%  Similarity=0.092  Sum_probs=15.7

Q ss_pred             CCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             972999952688999999999999739943998
Q gi|254780655|r  558 NAQVTIFSSGSELKIAVEACEILSSRNISTRVV  590 (673)
Q Consensus       558 ~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi  590 (673)
                      ..-|.|++=|+....+-|-. ...++++.+.||
T Consensus       445 r~Vv~i~GDGsf~mt~qEL~-Tavr~~lpv~iv  476 (588)
T CHL00099        445 EQVICISGDASFQMNLQELG-TIAQYKLPIKII  476 (588)
T ss_pred             CCEEEEECCHHHHHHHHHHH-HHHHHCCCCEEE
T ss_conf             81899975458632199999-999968995899


No 172
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=96.23  E-value=0.0096  Score=38.93  Aligned_cols=42  Identities=14%  Similarity=0.131  Sum_probs=20.7

Q ss_pred             CCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             34737998569972999952688999999999999739943998
Q gi|254780655|r  547 ALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVV  590 (673)
Q Consensus       547 ~~G~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi  590 (673)
                      .+|+. +...+..-|.|++=|+......|- ....++++.+.+|
T Consensus       432 AiGA~-lA~p~r~Vv~i~GDG~f~mt~qEL-~Ta~r~~lpv~iv  473 (574)
T PRK06466        432 AMGVK-LAFPDQDVVCVTGEGSIQMNIQEL-STCLQYGLPVKII  473 (574)
T ss_pred             HHHHH-HHCCCCCEEEEECHHHHHHHHHHH-HHHHHHCCCCEEE
T ss_conf             99999-858998389997506987659999-9999959995899


No 173
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=96.17  E-value=0.012  Score=38.32  Aligned_cols=43  Identities=21%  Similarity=0.186  Sum_probs=19.1

Q ss_pred             CCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             234737998569972999952688999999999999739943998
Q gi|254780655|r  546 CALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVV  590 (673)
Q Consensus       546 ~~~G~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi  590 (673)
                      ..+|+.. ...+..-|.|++=|+......| -....++++.+.+|
T Consensus       430 aAiGA~l-A~p~r~Vv~i~GDG~f~m~~~E-L~Ta~r~~lpi~iv  472 (570)
T PRK06725        430 AAIGAQL-AKEEELVICIAGDASFQMNIQE-LQTIAENNIPVKVF  472 (570)
T ss_pred             HHHHHHH-HCCCCCEEEEECCHHHHHHHHH-HHHHHHHCCCCEEE
T ss_conf             9999998-4899818999775277522999-99999968993899


No 174
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=96.17  E-value=0.041  Score=34.39  Aligned_cols=31  Identities=23%  Similarity=0.125  Sum_probs=18.8

Q ss_pred             CCCEEEECCHHHHHHHHHHHHCC--CCCCEEEE
Q ss_conf             22112112012457777652025--67834999
Q gi|254780655|r  497 DLLVLRPADSIETLECWQVALKE--KNRPSVLS  527 (673)
Q Consensus       497 nl~v~~P~d~~E~~~~~~~al~~--~~gP~~ir  527 (673)
                      +..-++..++.|+..+++.|+..  .++|++|-
T Consensus       530 G~~g~~V~~~~el~~Al~~Ala~~~~~~p~lie  562 (568)
T PRK08327        530 GGYAERVETPEELPGALGEALAAIREGRSAVLD  562 (568)
T ss_pred             CCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             985999799999999999998616799769999


No 175
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=96.12  E-value=0.015  Score=37.46  Aligned_cols=42  Identities=17%  Similarity=0.145  Sum_probs=19.8

Q ss_pred             CHHHHHHHC-CCCCCCCCCCCH-HHHHHHHHHHHHC-CCCHHHHH
Q ss_conf             179988641-444444444406-7888888875110-22102220
Q gi|254780655|r  213 DQYARFRAS-GWNTLSVNGHDH-HAITSTLRKAQLS-DKPTMIAC  254 (673)
Q Consensus       213 ~~~~~~~a~-Gw~~~~vdG~d~-~~i~~a~~~ak~~-~kP~~I~~  254 (673)
                      |+...|+.. -|.+.--+..++ ..+.+|++.|... .+|+.|.+
T Consensus       120 d~~~l~~~~tk~~~~v~~~~~~~~~~~~A~~~A~~~r~GPV~l~l  164 (562)
T PRK06048        120 DITGITMPITKHNYLVQDAKDLPRIVKEAFHIASTGRPGPVLIDL  164 (562)
T ss_pred             CHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf             599872022246068489999999999999999648997679973


No 176
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=96.12  E-value=0.017  Score=37.14  Aligned_cols=113  Identities=21%  Similarity=0.149  Sum_probs=75.8

Q ss_pred             HHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCCCCCCCCHHHHCCCC
Q ss_conf             01003257620023567879987288762200100355530012454111100001302-45433333333101000222
Q gi|254780655|r  411 SGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVL-THDSIGLGEDGPTHQPVEHL  489 (673)
Q Consensus       411 p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~tf~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~~G~DGpTHq~iedi  489 (673)
                      ...+++.. -|..+..++.|.++ .|.+.+++|-..=+++|.+.+..++.+++|++++. .++|-..|-- .+.|  -|+
T Consensus        41 ~~~~~~~e-~E~~A~~~~~Gas~-aG~r~~t~ts~~Gl~l~~e~l~~a~~~~~p~Vi~~~~r~g~~~~~~-~~~q--~D~  115 (160)
T cd07034          41 GGVVVQAE-SEHAAAEAAIGASA-AGARAMTATSGPGLNLMAEALYLAAGAELPLVIVVAQRPGPSTGLP-KPDQ--SDL  115 (160)
T ss_pred             CEEEEEEC-CHHHHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC-CCCC--HHH
T ss_conf             83899855-68999999999986-3987374306533988887999998478888999974588865455-5441--789


Q ss_pred             CHHHHHC-CCCEEEECCHHHHHHHHHHHHCC---CCCCEEEEE
Q ss_conf             1011101-22112112012457777652025---678349995
Q gi|254780655|r  490 AALRAIP-DLLVLRPADSIETLECWQVALKE---KNRPSVLSL  528 (673)
Q Consensus       490 a~lr~iP-nl~v~~P~d~~E~~~~~~~al~~---~~gP~~ir~  528 (673)
                      ...|.-- .+.|+.|+|..|+..+...|++-   ...|+.+++
T Consensus       116 ~~~~~~g~~~~vl~p~~~qE~~d~~~~A~~lae~~~~Pvi~~~  158 (160)
T cd07034         116 MAARYGGHPWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLS  158 (160)
T ss_pred             HHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf             9999679987999379999999999999999998689989953


No 177
>pfam01855 POR_N domain. This family includes the N terminal structural domain of the pyruvate ferredoxin oxidoreductase. This domain binds thiamine diphosphate, and along with domains II and IV, is involved in inter subunit contacts. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited.
Probab=96.07  E-value=0.018  Score=36.93  Aligned_cols=106  Identities=17%  Similarity=0.090  Sum_probs=76.5

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCCCCCCCCHHHHCCCCCHHHHHCC
Q ss_conf             620023567879987288762200100355530012454111100001302-4543333333310100022210111012
Q gi|254780655|r  419 VREHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVL-THDSIGLGEDGPTHQPVEHLAALRAIPD  497 (673)
Q Consensus       419 IaE~~~~~~aaGla~~~g~~p~~~tf~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~~G~DGpTHq~iedia~lr~iPn  497 (673)
                      =.|..+.+++.|.++ .|.+.+++|-++=+.+|.+.+..++..++|++++. .|++-+.|  -+||..-.|+.+.|.. +
T Consensus        43 e~E~~A~~~~~GAs~-aGara~taTs~~Gl~lm~e~l~~aag~~~P~V~~v~~R~~~~~g--l~~~~eq~D~~~~rd~-g  118 (230)
T pfam01855        43 ESEIGAISAVIGAAA-AGARAMTATSGQGLLLMIENLGKAAGEELPIVIHVVARAGPSPG--LSIFGDQGDLMAARDT-G  118 (230)
T ss_pred             CCHHHHHHHHHHHHH-HCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC--CCCCCCHHHHHHHHHC-C
T ss_conf             887999999999998-48620440267527675678889987368859999966789987--7666513789999856-9


Q ss_pred             CCEEEECCHHHHHHHHHHHHCC---CCCCEEEEE
Q ss_conf             2112112012457777652025---678349995
Q gi|254780655|r  498 LLVLRPADSIETLECWQVALKE---KNRPSVLSL  528 (673)
Q Consensus       498 l~v~~P~d~~E~~~~~~~al~~---~~gP~~ir~  528 (673)
                      +.++.|+|..|+..+...|++-   ...|+.+.+
T Consensus       119 ~~vl~~~~~QEa~d~~~~A~~lae~~~~Pv~v~~  152 (230)
T pfam01855       119 WIVLAPENVQEAFDLALVAFNLAEKVRTPVIHLF  152 (230)
T ss_pred             CEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             0899469999999999999999999889989982


No 178
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=96.00  E-value=0.047  Score=33.97  Aligned_cols=31  Identities=19%  Similarity=0.101  Sum_probs=15.6

Q ss_pred             CCEEEEECCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             72999952688999999999999739943998
Q gi|254780655|r  559 AQVTIFSSGSELKIAVEACEILSSRNISTRVV  590 (673)
Q Consensus       559 ~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi  590 (673)
                      .-|.|++=|+....+-|. ....++++.+.+|
T Consensus       441 ~Vv~i~GDG~f~m~~qEL-~Ta~r~~lpv~iv  471 (572)
T PRK06456        441 VVVDLDGDGSFLMTGNNL-ATAVDEHIPIISV  471 (572)
T ss_pred             EEEEEECCHHHHCCHHHH-HHHHHHCCCCEEE
T ss_conf             299998755863039999-9999958993899


No 179
>PRK11269 glyoxylate carboligase; Provisional
Probab=95.97  E-value=0.023  Score=36.24  Aligned_cols=31  Identities=10%  Similarity=0.184  Sum_probs=14.3

Q ss_pred             CCCCCCCCCCH-HHHHHHHHHHHHCC-CCHHHH
Q ss_conf             44444444406-78888888751102-210222
Q gi|254780655|r  223 WNTLSVNGHDH-HAITSTLRKAQLSD-KPTMIA  253 (673)
Q Consensus       223 w~~~~vdG~d~-~~i~~a~~~ak~~~-kP~~I~  253 (673)
                      |.+...+..++ ..+.+|++.|+... +|++|.
T Consensus       129 ~~~~v~~~~~~~~~l~~A~~~a~~grpGPV~l~  161 (591)
T PRK11269        129 WAVTVREPALVPRVFQQAFHLMRSGRPGPVLID  161 (591)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             245438599999999999999860899608997


No 180
>PRK08273 pyruvate decarboxylase; Provisional
Probab=95.90  E-value=0.052  Score=33.60  Aligned_cols=21  Identities=19%  Similarity=0.245  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHCCCCHHHHH
Q ss_conf             788888887511022102220
Q gi|254780655|r  234 HAITSTLRKAQLSDKPTMIAC  254 (673)
Q Consensus       234 ~~i~~a~~~ak~~~kP~~I~~  254 (673)
                      ..|.+|++.|....+|++|..
T Consensus       141 ~~l~~A~~~A~~~rgPv~l~i  161 (597)
T PRK08273        141 HLVDRAVRTALAERTVTAVIL  161 (597)
T ss_pred             HHHHHHHHHHHCCCCCEEEEE
T ss_conf             999999999865999889997


No 181
>PRK12474 hypothetical protein; Provisional
Probab=95.73  E-value=0.049  Score=33.81  Aligned_cols=30  Identities=13%  Similarity=0.224  Sum_probs=22.3

Q ss_pred             CCCEEEECCHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             2211211201245777765202567834999
Q gi|254780655|r  497 DLLVLRPADSIETLECWQVALKEKNRPSVLS  527 (673)
Q Consensus       497 nl~v~~P~d~~E~~~~~~~al~~~~gP~~ir  527 (673)
                      ++.-++..+..|+..+++.|+++ +||+.|=
T Consensus       486 G~~g~~V~~~~el~~al~~Al~~-~gP~lIe  515 (518)
T PRK12474        486 GVEASRATTAEEFSAQYAAAMAQ-RGPRLIE  515 (518)
T ss_pred             CCEEEEECCHHHHHHHHHHHHCC-CCCEEEE
T ss_conf             99899979999999999999739-9977999


No 182
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.69  E-value=0.041  Score=34.38  Aligned_cols=33  Identities=12%  Similarity=0.051  Sum_probs=17.3

Q ss_pred             CCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             9972999952688999999999999739943998
Q gi|254780655|r  557 PNAQVTIFSSGSELKIAVEACEILSSRNISTRVV  590 (673)
Q Consensus       557 ~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi  590 (673)
                      +..-|+|++=|+......| -....++++.+.+|
T Consensus       447 ~r~Vv~i~GDGsf~m~~~E-L~Tavr~~lpv~iv  479 (594)
T PRK09107        447 DALVIDIAGDASIQMNMQE-MSTAVQYNLPIKIF  479 (594)
T ss_pred             CCCEEEEECCHHHHHHHHH-HHHHHHHCCCCEEE
T ss_conf             9948999887187655999-99999968892899


No 183
>PRK07524 hypothetical protein; Provisional
Probab=95.58  E-value=0.024  Score=36.04  Aligned_cols=100  Identities=18%  Similarity=0.136  Sum_probs=47.1

Q ss_pred             HHHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEE-CCCCCCCC------CCC----CCHHHHCCCCCH
Q ss_conf             56787998728876220010--035553001245411110000130-24543333------333----310100022210
Q gi|254780655|r  425 AAAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHV-LTHDSIGL------GED----GPTHQPVEHLAA  491 (673)
Q Consensus       425 ~~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v-~th~gi~~------G~D----GpTHq~iedia~  491 (673)
                      ...+.|.++...-+|+++.-  ..|+- .-..+-.+.-.++|++++ +..+|.+.      ..+    |-+.+.. |.+.
T Consensus       413 lpaaiGaalA~p~r~vi~i~GDGsf~m-~~~eL~Ta~r~~lpi~iiV~NN~gyg~i~~~~~~~~~~~~~~~~~~~-df~~  490 (534)
T PRK07524        413 LPAAIGAALGAPERPVVCLVGDGGLQF-TLPELASAVEADLPLVVLLWNNQGYGEIRRYMVARDIEPVGVDPYTP-DFAA  490 (534)
T ss_pred             HHHHHHHHHHCCCCCEEEEECCHHHHH-HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCC-CHHH
T ss_conf             599999998298997899987268754-19999999997859189999798325999999862788655778999-9999


Q ss_pred             HHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             111012211211201245777765202567834999
Q gi|254780655|r  492 LRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLS  527 (673)
Q Consensus       492 lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir  527 (673)
                      +-.--++.-++..+..|+..+++.+++. +||++|-
T Consensus       491 lA~a~G~~~~~v~~~~el~~al~~al~~-~gp~lIe  525 (534)
T PRK07524        491 LARAFGCAAERVADLDQLQAALRAAFAR-PGPTLIE  525 (534)
T ss_pred             HHHHCCCEEEEECCHHHHHHHHHHHHCC-CCCEEEE
T ss_conf             9997799799979999999999999808-9958999


No 184
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=95.53  E-value=0.034  Score=34.98  Aligned_cols=18  Identities=17%  Similarity=0.342  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHCC-CCHHHH
Q ss_conf             888888751102-210222
Q gi|254780655|r  236 ITSTLRKAQLSD-KPTMIA  253 (673)
Q Consensus       236 i~~a~~~ak~~~-kP~~I~  253 (673)
                      +.+|++.|.... +|++|.
T Consensus       139 i~~Af~~A~sgrpGpv~i~  157 (550)
T COG0028         139 VARAFRIALSGRPGPVVVD  157 (550)
T ss_pred             HHHHHHHHHCCCCCEEEEE
T ss_conf             9999999852899629997


No 185
>PRK07586 hypothetical protein; Validated
Probab=95.49  E-value=0.067  Score=32.82  Aligned_cols=30  Identities=20%  Similarity=0.222  Sum_probs=19.9

Q ss_pred             CCCEEEECCHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             2211211201245777765202567834999
Q gi|254780655|r  497 DLLVLRPADSIETLECWQVALKEKNRPSVLS  527 (673)
Q Consensus       497 nl~v~~P~d~~E~~~~~~~al~~~~gP~~ir  527 (673)
                      ++.-++-.+..|+..+++.|++. ++|+.|-
T Consensus       482 G~~g~~V~~~~el~~Al~~a~~~-~gP~lIe  511 (514)
T PRK07586        482 GVPARRVTTAEEFADALARALAE-PGPHLIE  511 (514)
T ss_pred             CCEEEEECCHHHHHHHHHHHHCC-CCCEEEE
T ss_conf             99799979999999999999728-9967999


No 186
>PRK07449 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; Validated
Probab=95.22  E-value=0.27  Score=28.41  Aligned_cols=33  Identities=15%  Similarity=0.040  Sum_probs=13.6

Q ss_pred             CCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             9972999952688999999999999739943998
Q gi|254780655|r  557 PNAQVTIFSSGSELKIAVEACEILSSRNISTRVV  590 (673)
Q Consensus       557 ~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi  590 (673)
                      +++-|+|++=|+.....-+ -....+.++.+.||
T Consensus       423 ~~~vv~i~GDGsf~~~~~e-L~Ta~~~~lpv~iv  455 (548)
T PRK07449        423 GKPTVALIGDLSFLHDLNG-LLLLKQESGPLTIV  455 (548)
T ss_pred             CCCEEEEECCHHHHHCHHH-HHHHHHCCCCCEEE
T ss_conf             9988999554587604579-99998669995899


No 187
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=95.20  E-value=0.057  Score=33.31  Aligned_cols=109  Identities=18%  Similarity=0.110  Sum_probs=66.8

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCEE-CCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCC-CCCCCCHHHHCCCCCHHHHHC
Q ss_conf             62002356787998728876220-0100355530012454111100001302454333-333331010002221011101
Q gi|254780655|r  419 VREHAMAAAMNGIALHKGLAPYS-GTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIG-LGEDGPTHQPVEHLAALRAIP  496 (673)
Q Consensus       419 IaE~~~~~~aaGla~~~g~~p~~-~tf~~F~~~~~~~ir~~al~~~~v~~v~th~gi~-~G~DGpTHq~iedia~lr~iP  496 (673)
                      .-|++++-||.|.+.-.|...+| .|-..=..-....+..+-+.+.|++++....... .|  -..||.+++..+++.+-
T Consensus        42 ~hE~~A~~mA~gyar~tgkp~v~~~t~GPG~~N~~~gl~~A~~d~~Pvl~itg~~~~~~~g--~g~~Q~~dq~~l~~~it  119 (162)
T cd07037          42 VDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLTADRPPELRG--TGANQTIDQVGLFGDYV  119 (162)
T ss_pred             CCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHCC--CCCCCCCCHHHHHHHHH
T ss_conf             6677899999999998799879994788358888899998753299889996899788617--89886437877736552


Q ss_pred             CC--CEEEECCHH-------HHHHHHHHHHCCCCCCEEEEEC
Q ss_conf             22--112112012-------4577776520256783499952
Q gi|254780655|r  497 DL--LVLRPADSI-------ETLECWQVALKEKNRPSVLSLS  529 (673)
Q Consensus       497 nl--~v~~P~d~~-------E~~~~~~~al~~~~gP~~ir~~  529 (673)
                      -.  .|-.|.+..       .+..+++.|.....||++|-+|
T Consensus       120 K~s~~v~~~~~~~~~~~i~~~l~~A~~~A~tg~pGPV~l~lP  161 (162)
T cd07037         120 RWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP  161 (162)
T ss_pred             CEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECC
T ss_conf             078776883236557899999999999971899996898489


No 188
>PRK08266 hypothetical protein; Provisional
Probab=95.17  E-value=0.051  Score=33.69  Aligned_cols=22  Identities=5%  Similarity=0.134  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHC-CCCHHHHH
Q ss_conf             67888888875110-22102220
Q gi|254780655|r  233 HHAITSTLRKAQLS-DKPTMIAC  254 (673)
Q Consensus       233 ~~~i~~a~~~ak~~-~kP~~I~~  254 (673)
                      ...+.+|++.|... .+|+.|.+
T Consensus       140 ~~~l~~A~~~a~~~~~GPV~l~i  162 (531)
T PRK08266        140 PALVARAFQEMLSGRPGPVALEM  162 (531)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEC
T ss_conf             99999999999647998549978


No 189
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=95.16  E-value=0.079  Score=32.30  Aligned_cols=114  Identities=19%  Similarity=0.256  Sum_probs=68.7

Q ss_pred             HCCCCCCCHHHHHHHHHHHHHCCCCCCEECC-CH-HHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHCCCCC
Q ss_conf             0032576200235678799872887622001-00-355530012454111100001302454333333331010002221
Q gi|254780655|r  413 RYLHYGVREHAMAAAMNGIALHKGLAPYSGT-FM-VFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHLA  490 (673)
Q Consensus       413 r~i~~GIaE~~~~~~aaGla~~~g~~p~~~t-f~-~F~~~~~~~ir~~al~~~~v~~v~th~gi~~G~DGpTHq~iedia  490 (673)
                      |++.+ ..|+.++.+|.|.+.-+|-.+++.+ .. -|.+ +-..|..+...+.|++++..-.+- ...+-..||.+.+..
T Consensus        36 ~~i~~-~~E~~A~~~A~g~~~~tg~~~v~~~~~gpG~~n-~~~~l~~A~~~~~Pvl~i~g~~~~-~~~~~~~~q~~d~~~  112 (155)
T cd07035          36 RYILV-RHEQGAVGMADGYARATGKPGVVLVTSGPGLTN-AVTGLANAYLDSIPLLVITGQRPT-AGEGRGAFQEIDQVA  112 (155)
T ss_pred             EEEEE-CCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH-HHHHHHHHHHCCCCEEEEECCCCH-HHHCCCCCCCCCHHH
T ss_conf             79987-877999999999998659975999827768887-889999999838980899468886-772755654536476


Q ss_pred             HHHHHCCCCEEEECCHHHHH----HHHHHHHCCCCCCEEEEECC
Q ss_conf             01110122112112012457----77765202567834999524
Q gi|254780655|r  491 ALRAIPDLLVLRPADSIETL----ECWQVALKEKNRPSVLSLSR  530 (673)
Q Consensus       491 ~lr~iPnl~v~~P~d~~E~~----~~~~~al~~~~gP~~ir~~R  530 (673)
                      +++.+= ...++..++.++.    .+++.|.....||++|-+|+
T Consensus       113 ~~~~~~-k~~~~i~~~~~~~~~i~~A~~~a~s~~~gPv~l~iP~  155 (155)
T cd07035         113 LFRPIT-KWAYRVTSPEEIPEALRRAFRIALSGRPGPVALDLPK  155 (155)
T ss_pred             HCCCCC-CEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEECCC
T ss_conf             527766-3257889999999999999999745989458998087


No 190
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=94.76  E-value=0.36  Score=27.54  Aligned_cols=44  Identities=27%  Similarity=0.214  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             9999999999853426887678459998436211434455788765220223306999
Q gi|254780655|r  138 NAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLW  195 (673)
Q Consensus       138 ~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~  195 (673)
                      .|+|+|.+.+       ++     |.++|--|--. -..+-|+.-|..-+. +|||+-
T Consensus        61 fALGlAKas~-------rP-----Vavi~TSGTA~-ANl~PAViEA~~srv-pLIVLT  104 (566)
T COG1165          61 FALGLAKASK-------RP-----VAVICTSGTAV-ANLYPAVIEANLSRV-PLIVLT  104 (566)
T ss_pred             HHHHHHHHCC-------CC-----EEEEECCCCHH-HHCCHHHHHHHHCCC-CEEEEE
T ss_conf             8876655138-------98-----79997674056-411578775431388-469982


No 191
>PRK06154 hypothetical protein; Provisional
Probab=94.73  E-value=0.07  Score=32.67  Aligned_cols=120  Identities=16%  Similarity=0.166  Sum_probs=51.5

Q ss_pred             CCCCCCHHHCCCCCCCH--HHHHHHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEECCCC-CCCC---
Q ss_conf             45432001003257620--02356787998728876220010--0355530012454111100001302454-3333---
Q gi|254780655|r  405 ISKSDFSGRYLHYGVRE--HAMAAAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHVLTHD-SIGL---  476 (673)
Q Consensus       405 ~~~~~~p~r~i~~GIaE--~~~~~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v~th~-gi~~---  476 (673)
                      +++-..|.+|+..|-.=  .-....|.|.++...-+|++++-  ..|+- .-..+.-+.-.++|++++.-.. +++.   
T Consensus       406 ~~~~~~p~~~~~~g~~g~mG~glpaAiGa~lA~p~~~Vv~i~GDGsf~m-~~qEL~Ta~r~~lpv~viV~NN~~~g~~~~  484 (556)
T PRK06154        406 FYRARRPGSYLGWGKTTQLGYGLGLAMGAKLARPDALVANLLGDAAFGE-CGMDFETAVRNRIPTVTILLNNGCMGGYDK  484 (556)
T ss_pred             HHHCCCCCCEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHH-HHHHHHHHHHHCCCCEEEEEECCHHHHHHH
T ss_conf             5303788844047987744540699999997389993899987379887-799999999949997899996806389998


Q ss_pred             --CCCCCHHHHCC----CCCHHHHHCCCCEEEECCHHHHHHHHHHHHCC--CCCCEEE
Q ss_conf             --33331010002----22101110122112112012457777652025--6783499
Q gi|254780655|r  477 --GEDGPTHQPVE----HLAALRAIPDLLVLRPADSIETLECWQVALKE--KNRPSVL  526 (673)
Q Consensus       477 --G~DGpTHq~ie----dia~lr~iPnl~v~~P~d~~E~~~~~~~al~~--~~gP~~i  526 (673)
                        ...+. .++..    |.+.+----++.-++-.++.|+..+++.|++.  .++|+.|
T Consensus       485 ~~~~~~~-~~~~~~~~~Df~~lA~a~G~~g~~V~~~~el~~Al~~A~~~~~~g~P~lI  541 (556)
T PRK06154        485 HMPLSTT-KYRTRFLSGDYAMIARALGGYTERVEDPERLVPALRRAARKAKTGRPALL  541 (556)
T ss_pred             HHHHHCC-CCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             8675067-66787589999999997799799979999999999999854889983999


No 192
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=94.56  E-value=0.4  Score=27.21  Aligned_cols=178  Identities=13%  Similarity=0.160  Sum_probs=85.3

Q ss_pred             CCCCCHHHHHHHHHHHHHCC--CCCCEECCCHHHHHHH---HHHHHHHHH----HHCCCEEECCCCCCCCCCCCCHHHHC
Q ss_conf             25762002356787998728--8762200100355530---012454111----10000130245433333333101000
Q gi|254780655|r  416 HYGVREHAMAAAMNGIALHK--GLAPYSGTFMVFSDYS---RPAIRLASL----MGIRVIHVLTHDSIGLGEDGPTHQPV  486 (673)
Q Consensus       416 ~~GIaE~~~~~~aaGla~~~--g~~p~~~tf~~F~~~~---~~~ir~~al----~~~~v~~v~th~gi~~G~DGpTHq~i  486 (673)
                      +-...|.++.++--|-++..  .+.-+.+-|..|..-+   .||--.+.-    ....++...-|..  -|. ||.|-+-
T Consensus       631 nS~LSEeAvlgFEYGYs~~~p~~lvlWEAQFGDFaNgAQvviDQfisSge~KW~r~sgLv~lLPHgy--EGQ-GPEHSSa  707 (906)
T COG0567         631 NSPLSEEAVLGFEYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFISSGEQKWGRMSGLVMLLPHGY--EGQ-GPEHSSA  707 (906)
T ss_pred             ECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHCCCEEECCCCC--CCC-CCCCCCC
T ss_conf             1455688887565314323873221001320561368761213656659899988657227722767--899-9767643


Q ss_pred             CCCCHHHHH--CCCCEEEECCHHHHHHHHHHHHC-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEC----CCC
Q ss_conf             222101110--12211211201245777765202-56783499952444433456655322123473799856----997
Q gi|254780655|r  487 EHLAALRAI--PDLLVLRPADSIETLECWQVALK-EKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYIST----PNA  559 (673)
Q Consensus       487 edia~lr~i--Pnl~v~~P~d~~E~~~~~~~al~-~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~----~~~  559 (673)
                      ..--+|+..  -||+|..|+.+.+...+++.-+. ....|-.+--|++-+- .+......+.+..|+...+..    .+.
T Consensus       708 RlER~LQLcaE~NmqV~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR-~~~a~S~~~el~~~~F~~vl~d~~~~~~  786 (906)
T COG0567         708 RLERFLQLCAENNMQVVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLR-HKLAVSSLEELTEGTFQPVLEDIDELDP  786 (906)
T ss_pred             HHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHCCCCCEEECCHHHHHH-CCCCCCCHHHHCCCHHHCCHHCCCCCCC
T ss_conf             468899861875887883382899999999987641567518557655654-6266884555230122100201111454


Q ss_pred             --CEEEEECCHHHHHHHHHHHHHHHCCC-CEEEEECCCCCHHCC
Q ss_conf             --29999526889999999999997399-439985746581000
Q gi|254780655|r  560 --QVTIFSSGSELKIAVEACEILSSRNI-STRVVSVPCFELFFE  600 (673)
Q Consensus       560 --dv~iia~G~~v~~al~aa~~L~~~Gi-~~~Vi~~~s~k~ld~  600 (673)
                        .-+++++|-+- ..+.+..  +++|. ++.++-+-.+=||-.
T Consensus       787 ~v~rvvlcSGKvy-ydl~~~r--~~~g~~dvaiiRiEqLyPfP~  827 (906)
T COG0567         787 KVKRVVLCSGKVY-YDLLEQR--EKDGRDDVAIVRIEQLYPFPA  827 (906)
T ss_pred             CEEEEEEECCCHH-HHHHHHH--HHCCCCCEEEEEEECCCCCHH
T ss_conf             4135763044067-9999778--646876526875201167668


No 193
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=94.31  E-value=0.096  Score=31.67  Aligned_cols=115  Identities=17%  Similarity=0.059  Sum_probs=68.4

Q ss_pred             HCCCCCCCHHHHHHHHHHHHHCCCCCCEEC-CCHHHHHHHHHHHHHHHHHHCCCEEECCCCCC-CCCCCCCHHHHCCCCC
Q ss_conf             003257620023567879987288762200-10035553001245411110000130245433-3333331010002221
Q gi|254780655|r  413 RYLHYGVREHAMAAAMNGIALHKGLAPYSG-TFMVFSDYSRPAIRLASLMGIRVIHVLTHDSI-GLGEDGPTHQPVEHLA  490 (673)
Q Consensus       413 r~i~~GIaE~~~~~~aaGla~~~g~~p~~~-tf~~F~~~~~~~ir~~al~~~~v~~v~th~gi-~~G~DGpTHq~iedia  490 (673)
                      |++.+ --|++++.+|.|.+...|-..+|. +...=..-+...|..+...+.|++++...... ..|.  ..+|-+++..
T Consensus        40 ~~i~~-rhE~~A~~mA~gyar~tg~~gv~~~t~GpG~tN~~~gl~~A~~~~~Pll~i~g~~~~~~~~~--~~~Q~~d~~~  116 (164)
T cd07039          40 EFIQV-RHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAGQVPTDELGT--DYFQEVDLLA  116 (164)
T ss_pred             EEEEE-CCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHCCC--CCCCCCCHHH
T ss_conf             39954-87899999999999997998799984282388899999999985897799966775543489--9874274999


Q ss_pred             HHHHHCCC--CEEEECCH-HHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf             01110122--11211201-2457777652025678349995244
Q gi|254780655|r  491 ALRAIPDL--LVLRPADS-IETLECWQVALKEKNRPSVLSLSRQ  531 (673)
Q Consensus       491 ~lr~iPnl--~v~~P~d~-~E~~~~~~~al~~~~gP~~ir~~R~  531 (673)
                      +++.+=..  .+-.|.+. ..+..+++.|.... ||++|-+|+.
T Consensus       117 ~~~~~tK~~~~v~~~~~~~~~~~~A~~~A~~~~-GPV~l~iP~D  159 (164)
T cd07039         117 LFKDVAVYNETVTSPEQLPELLDRAIRTAIAKR-GVAVLILPGD  159 (164)
T ss_pred             HHHHHHCEEEECCCHHHHHHHHHHHHHHHCCCC-CCEEEECCHH
T ss_conf             989974578885999999999999999854089-9999992879


No 194
>PRK08611 pyruvate oxidase; Provisional
Probab=94.29  E-value=0.16  Score=30.18  Aligned_cols=20  Identities=10%  Similarity=0.190  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHCCCCHHHHH
Q ss_conf             88888887511022102220
Q gi|254780655|r  235 AITSTLRKAQLSDKPTMIAC  254 (673)
Q Consensus       235 ~i~~a~~~ak~~~kP~~I~~  254 (673)
                      .+.+|++.|....+|++|..
T Consensus       142 ~l~~A~~~A~~~rGPv~l~i  161 (576)
T PRK08611        142 IVNEAIRTAYEKKGVAVLTI  161 (576)
T ss_pred             HHHHHHHHHHCCCCCEEEEC
T ss_conf             99999999863899548955


No 195
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=94.24  E-value=0.14  Score=30.59  Aligned_cols=21  Identities=19%  Similarity=0.287  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHCCCCHHHHH
Q ss_conf             788888887511022102220
Q gi|254780655|r  234 HAITSTLRKAQLSDKPTMIAC  254 (673)
Q Consensus       234 ~~i~~a~~~ak~~~kP~~I~~  254 (673)
                      +.+.+|++.|....+|++|..
T Consensus       142 ~~~~~a~~~A~~~~~Pv~l~i  162 (535)
T TIGR03394       142 AEIARVLGSARELSRPVYLEI  162 (535)
T ss_pred             HHHHHHHHHHHHCCCCEEEEE
T ss_conf             999999999985479859993


No 196
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of  pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many 
Probab=93.75  E-value=0.19  Score=29.51  Aligned_cols=110  Identities=22%  Similarity=0.185  Sum_probs=62.4

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCEEC-CCHHHHHHHHHHHHHHHHHHCCCEEECCCCCC-CCCCCCCHHHHCC------CCC
Q ss_conf             620023567879987288762200-10035553001245411110000130245433-3333331010002------221
Q gi|254780655|r  419 VREHAMAAAMNGIALHKGLAPYSG-TFMVFSDYSRPAIRLASLMGIRVIHVLTHDSI-GLGEDGPTHQPVE------HLA  490 (673)
Q Consensus       419 IaE~~~~~~aaGla~~~g~~p~~~-tf~~F~~~~~~~ir~~al~~~~v~~v~th~gi-~~G~DGpTHq~ie------dia  490 (673)
                      --||+++-+|-|.|--.| ..+|. |...=..-+...|-.+-..+.|++++...... ..|.+...||.+.      ++.
T Consensus        42 rhE~~A~~mAdgyaR~tg-~gv~~~t~GPG~tN~~tgl~~A~~d~~Pvl~isG~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (162)
T cd07038          42 CNELNAGYAADGYARVKG-LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLK  120 (162)
T ss_pred             CCHHHHHHHHHHHHHHCC-CEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf             764889999999998549-6566655787188899999999983898799968877556525763001126521699999


Q ss_pred             HHHHHCC--CCEEEECC-HHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf             0111012--21121120-1245777765202567834999524
Q gi|254780655|r  491 ALRAIPD--LLVLRPAD-SIETLECWQVALKEKNRPSVLSLSR  530 (673)
Q Consensus       491 ~lr~iPn--l~v~~P~d-~~E~~~~~~~al~~~~gP~~ir~~R  530 (673)
                      ++|.+--  .+|-.|.+ +..+..+++.|+... ||++|-+||
T Consensus       121 ~~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~-gPV~l~iPr  162 (162)
T cd07038         121 MFEEITCAAARLTDPENAAEEIDRVLRTALRES-RPVYIEIPR  162 (162)
T ss_pred             HHHHHEEEEEEECCHHHHHHHHHHHHHHHHHCC-CCEEEECCC
T ss_conf             998673288992999999999999999984289-888996388


No 197
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=93.73  E-value=0.36  Score=27.52  Aligned_cols=32  Identities=13%  Similarity=0.146  Sum_probs=15.7

Q ss_pred             CCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             972999952688999999999999739943998
Q gi|254780655|r  558 NAQVTIFSSGSELKIAVEACEILSSRNISTRVV  590 (673)
Q Consensus       558 ~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi  590 (673)
                      ..-|.|++=|+..... ..-....++++.+.+|
T Consensus       427 r~Vv~i~GDG~f~m~~-~EL~Ta~r~~lpv~iv  458 (574)
T PRK09124        427 RQVVSLSGDGGFSMLM-GDFLSLVQLKLPVKIV  458 (574)
T ss_pred             CCEEEEECCCHHHHHH-HHHHHHHHHCCCCEEE
T ss_conf             9489998862887549-9999999978895899


No 198
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=93.51  E-value=0.62  Score=25.81  Aligned_cols=21  Identities=14%  Similarity=0.044  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHCCCCHHHHH
Q ss_conf             788888887511022102220
Q gi|254780655|r  234 HAITSTLRKAQLSDKPTMIAC  254 (673)
Q Consensus       234 ~~i~~a~~~ak~~~kP~~I~~  254 (673)
                      ..+.+|++.|....+|+.|..
T Consensus       138 ~~l~~A~~~a~~~~GPv~l~i  158 (549)
T PRK06457        138 YIIWRAIREAVSKRGVAHLNL  158 (549)
T ss_pred             HHHHHHHHHHHCCCCCEEEEE
T ss_conf             999999998640799989997


No 199
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase; InterPro: IPR011895   The oxidative decarboxylation of pyruvate to acetyl-CoA, a central step in energy metabolism, can occur by two different mechanisms . In mitochondria and aerobic bacteria this reaction is catalysed by the multienzyme complex pyruvate dehydrogenase using NAD as electron acceptor. In anaerobic organisms, however, this reaction is reversibly catalysed by a single enzyme using either ferrodoxin or flavodoxin as the electron acceptor.   Pyruvate:ferrodoxin/flavodoxin reductases (PFORs) in this entry occur in both obligately and facultatively anaerobic bacteria and also some eukaryotic microorganisms. These proteins are single-chain enzymes containing a thiamin pyrophosphate cofactor for the cleavage of carbon-carbon bonds next to a carbonyl group, and iron-sulphur clusters for electron transfer. The Desulfovibrio africanus enzyme is currently the only PFOR whose three dimensional structure is known , . It is a homodimer where each subunit contains one thiamin pyrophosphate cofactor and two ferrodoxin-like 4Fe-S clusters and an atypical 4Fe-S cluster. Each monomer is composed of seven domains - domains I, II and VI make intersubunit contacts, while domains III, IV and V are located at the suface of the dimer, and domain VII forms a long arm extending over the other subunit. The cofactor is bound at the interface of domains I and VI and is proximal to the atypical 4Fe-S bound by domain VI, while the ferrodoxin-like 4Fe-S clusters are bound by domain V. Comparison of this enzyme with the multi-chain PFORs shows a correspondance between the domains in this enzyme and the subunits of the multi-chain enzymes.; GO: 0005506 iron ion binding, 0016903 oxidoreductase activity acting on the aldehyde or oxo group of donors, 0006118 electron transport.
Probab=93.00  E-value=0.26  Score=28.54  Aligned_cols=20  Identities=10%  Similarity=0.125  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHCCCCEEEEECCC
Q ss_conf             9999999997399439985746
Q gi|254780655|r  573 AVEACEILSSRNISTRVVSVPC  594 (673)
Q Consensus       573 al~aa~~L~~~Gi~~~Vi~~~s  594 (673)
                      -+++.+=|++.|+  =|+|.++
T Consensus       503 ~yDvlkgLKkgGT--FlLNs~w  522 (1194)
T TIGR02176       503 TYDVLKGLKKGGT--FLLNSPW  522 (1194)
T ss_pred             HHHHHHCCCCCCE--EEEECCC
T ss_conf             8787613356875--7875466


No 200
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=92.96  E-value=0.58  Score=26.02  Aligned_cols=21  Identities=10%  Similarity=0.216  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHCCCCHHHHH
Q ss_conf             788888887511022102220
Q gi|254780655|r  234 HAITSTLRKAQLSDKPTMIAC  254 (673)
Q Consensus       234 ~~i~~a~~~ak~~~kP~~I~~  254 (673)
                      ..+.+|++.|....+|++|..
T Consensus       139 ~~l~~A~~~A~~~~GPv~l~i  159 (578)
T PRK06546        139 RVLHSAIQHAVAGGGVSVVTL  159 (578)
T ss_pred             HHHHHHHHHHHCCCCCEEEEC
T ss_conf             999999999747999879977


No 201
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006    One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate.  2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+.    This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=92.15  E-value=0.49  Score=26.54  Aligned_cols=79  Identities=19%  Similarity=0.262  Sum_probs=39.0

Q ss_pred             EECCHHHHHHHHHHHHCC--CCCCEEEEECCCC----CCCCCCCCCCCCCCCCC--------CEEEEECCCCCEEEEECC
Q ss_conf             112012457777652025--6783499952444----43345665532212347--------379985699729999526
Q gi|254780655|r  502 RPADSIETLECWQVALKE--KNRPSVLSLSRQN----LPFLRTQYESNNLCALG--------AYDYISTPNAQVTIFSSG  567 (673)
Q Consensus       502 ~P~d~~E~~~~~~~al~~--~~gP~~ir~~R~~----~p~~~~~~~~~~~~~~G--------~~~~~~~~~~dv~iia~G  567 (673)
                      .|-..-|++.+=+..++-  .-.|.+|....++    +....+.  ..|.-+.|        +.+.+-  ..||.|+|+|
T Consensus       330 MPGSrrEV~NAREEGV~F~FnvQP~~i~~~~~~~~~Gv~~~~t~--~GEPDA~GRRrp~pv~GSE~vl--~ADvvI~AFG  405 (480)
T TIGR01318       330 MPGSRREVANAREEGVEFLFNVQPLEIELDEDGKVIGVKLVRTK--LGEPDAKGRRRPEPVAGSEFVL--PADVVIMAFG  405 (480)
T ss_pred             CCCCHHHHCCCHHCCCEEEEEECCEEEEECCCCCEEEEEEECCC--CCCCCCCCCCCCCCCCCCCEEC--CCCEEEEEEC
T ss_conf             78775552661111711321003158887788852335652356--6786777687771047865151--4655897106


Q ss_pred             HHHHHHHHHHHHHHHCCCCEE
Q ss_conf             889999999999997399439
Q gi|254780655|r  568 SELKIAVEACEILSSRNISTR  588 (673)
Q Consensus       568 ~~v~~al~aa~~L~~~Gi~~~  588 (673)
                      -.-    ...+-|+++||++.
T Consensus       406 F~P----~~~pWL~~~gi~~d  422 (480)
T TIGR01318       406 FSP----HAMPWLAEHGITLD  422 (480)
T ss_pred             CCC----CCCCHHHHCCEEEC
T ss_conf             789----88644451775563


No 202
>TIGR01504 glyox_carbo_lig glyoxylate carboligase; InterPro: IPR006397   This family represents glyoxylate carboligase, also called tartronate-semialdehyde synthase. It releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism. ; GO: 0009028 tartronate-semialdehyde synthase activity, 0009436 glyoxylate catabolic process.
Probab=91.11  E-value=0.55  Score=26.19  Aligned_cols=24  Identities=21%  Similarity=0.232  Sum_probs=13.1

Q ss_pred             CEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf             299995268899999999999973
Q gi|254780655|r  560 QVTIFSSGSELKIAVEACEILSSR  583 (673)
Q Consensus       560 dv~iia~G~~v~~al~aa~~L~~~  583 (673)
                      +.+=+.--..+..|++-++.|..+
T Consensus       522 ka~rv~~P~~~~~a~~~a~~l~~~  545 (593)
T TIGR01504       522 KAIRVTKPEELAAALEQAKKLMAE  545 (593)
T ss_pred             CEEEECCHHHHHHHHHHHHHHHHH
T ss_conf             068840827789999999999984


No 203
>KOG4166 consensus
Probab=90.17  E-value=0.6  Score=25.94  Aligned_cols=85  Identities=20%  Similarity=0.198  Sum_probs=34.9

Q ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC-CHHHHHHH-CCCCCCCCCCCCHH-HHH
Q ss_conf             5999843621143445578876522022330699962763223223556782-17998864-14444444444067-888
Q gi|254780655|r  161 YTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADST-DQYARFRA-SGWNTLSVNGHDHH-AIT  237 (673)
Q Consensus       161 ~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~-~~~~~~~a-~Gw~~~~vdG~d~~-~i~  237 (673)
                      -|.+.-|-|+.+-=   --+..|=..+ -+|++|--  +.--+---.+.+.+ |+..--++ --|||..-|=.|+. .|.
T Consensus       157 vvlvTSGPGATNvv---tp~ADAlaDg-~PlVvftG--QVptsaIGtDAFQEadiVgisRScTKwNvmVkdVedlPrrI~  230 (675)
T KOG4166         157 VVLVTSGPGATNVV---TPLADALADG-VPLVVFTG--QVPTSAIGTDAFQEADIVGISRSCTKWNVMVKDVEDLPRRIE  230 (675)
T ss_pred             EEEEECCCCCCCCC---CHHHHHHHCC-CCEEEEEC--CCCHHHCCCCHHCCCCEEEEEECCCEEHEEEECHHHHHHHHH
T ss_conf             79982699842332---3566876048-75799936--665132052010027733232021230112100877567888


Q ss_pred             HHHHHHHHCCC--CHHH
Q ss_conf             88887511022--1022
Q gi|254780655|r  238 STLRKAQLSDK--PTMI  252 (673)
Q Consensus       238 ~a~~~ak~~~k--P~~I  252 (673)
                      +||+-|- +++  |+++
T Consensus       231 EAFeiAT-SGRPGPVLV  246 (675)
T KOG4166         231 EAFEIAT-SGRPGPVLV  246 (675)
T ss_pred             HHHHHHC-CCCCCCEEE
T ss_conf             7761440-699987686


No 204
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family; InterPro: IPR011896    A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This entry describes the beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes..
Probab=88.65  E-value=0.31  Score=27.99  Aligned_cols=55  Identities=25%  Similarity=0.344  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHH---HHHHHCCCCEEEEEECCCCCC
Q ss_conf             1479999999999998534268876784599984362114344557887---652202233069996276322
Q gi|254780655|r  133 GQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAIS---FAGHLGLSKLIVLWDNNGISI  202 (673)
Q Consensus       133 G~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~---~A~~~~l~nli~i~d~N~~si  202 (673)
                      |=+|+.|+|.-+|-..           =+|+|.=|||++.    =|..|   .+++.++|-+.+++||.=+.+
T Consensus        56 GRA~P~A~G~KlANP~-----------L~Viv~GGDGD~~----GIG~~Hfva~gRRN~dIt~l~~DN~VYGL  113 (302)
T TIGR02177        56 GRALPVATGIKLANPK-----------LKVIVVGGDGDLY----GIGGNHFVAAGRRNVDITVLVHDNQVYGL  113 (302)
T ss_pred             CCCCHHHHHHHHCCCC-----------CEEEEEECCCCCH----HHHHHHHHHHHCCCCCCEEEEECCEECCC
T ss_conf             5631011012010898-----------4689860686410----11057787541147882488424705466


No 205
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004    One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate .  2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=88.51  E-value=1.3  Score=23.52  Aligned_cols=15  Identities=20%  Similarity=0.180  Sum_probs=8.4

Q ss_pred             CCCCHHHHHHHHHHH
Q ss_conf             114344557887652
Q gi|254780655|r  170 CLMEGISQEAISFAG  184 (673)
Q Consensus       170 ~l~eG~~~EAl~~A~  184 (673)
                      +.+||..-||+..+.
T Consensus        54 ki~eGd~kgA~~iI~   68 (462)
T TIGR01316        54 KIKEGDLKGALKIIK   68 (462)
T ss_pred             HCCCCCHHHHHHHHC
T ss_conf             302363233333200


No 206
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=88.43  E-value=1.3  Score=23.47  Aligned_cols=96  Identities=16%  Similarity=0.189  Sum_probs=48.3

Q ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC-----CCCCCC--CCC----------CCCCHHHHHHHCC
Q ss_conf             45999843621143445578876522022330699962763-----223223--556----------7821799886414
Q gi|254780655|r  160 HYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGI-----SIDGPI--SLA----------DSTDQYARFRASG  222 (673)
Q Consensus       160 ~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~-----si~~~~--~~~----------~~~~~~~~~~a~G  222 (673)
                      .-+|+|=|||-.- -.-+-++.++=.-+-|--|+++|+--+     |-|+.|  ..+          ..-|+....-+||
T Consensus       152 kSvWivGGDGWAY-DIG~gGLdHVLAsG~nVNvLVlDtE~YsNTGgQ~SkaTp~ga~akfa~~Gk~~~KKDl~~iam~~g  230 (365)
T cd03377         152 KSVWIIGGDGWAY-DIGYGGLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMSYG  230 (365)
T ss_pred             CCEEEECCCCHHH-HCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHCC
T ss_conf             5358874661232-036311567774589728999658655577753356886404431043576544132999999769


Q ss_pred             CCCC-CC-CCCCHHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf             4444-44-4440678888888751102210222013
Q gi|254780655|r  223 WNTL-SV-NGHDHHAITSTLRKAQLSDKPTMIACET  256 (673)
Q Consensus       223 w~~~-~v-dG~d~~~i~~a~~~ak~~~kP~~I~~~T  256 (673)
                      --|. .| =|-+..+..+|+++|.+-+.|++|++..
T Consensus       231 ~vYVA~va~ga~~~q~lka~~eA~~~~GPs~i~ays  266 (365)
T cd03377         231 NVYVAQIALGANDNQTLKAFREAEAYDGPSLIIAYS  266 (365)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             966999616899999999999986789986998877


No 207
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005    One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate.  2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+.    This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=84.77  E-value=1.5  Score=22.96  Aligned_cols=22  Identities=23%  Similarity=0.638  Sum_probs=12.5

Q ss_pred             CCCCCEEEEECCC------CCEEEEECC
Q ss_conf             2347379985699------729999526
Q gi|254780655|r  546 CALGAYDYISTPN------AQVTIFSSG  567 (673)
Q Consensus       546 ~~~G~~~~~~~~~------~dv~iia~G  567 (673)
                      -..|+|....=+|      .|++|||-|
T Consensus       409 ~~~Gk~~~~e~pGsE~~~~AdLVLLAmG  436 (517)
T TIGR01317       409 DEDGKYEFVEVPGSEEVFEADLVLLAMG  436 (517)
T ss_pred             CCCCCEEEEEECCCCCCCHHHEEEEECC
T ss_conf             7898288886079752011012332026


No 208
>pfam00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=81.25  E-value=3.6  Score=20.28  Aligned_cols=50  Identities=18%  Similarity=0.186  Sum_probs=35.4

Q ss_pred             CEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECC--CCCHHCCCCHHHHHHHCCC
Q ss_conf             2999952688999999999999739943998574--6581000868899964367
Q gi|254780655|r  560 QVTIFSSGSELKIAVEACEILSSRNISTRVVSVP--CFELFFEQSDSYRAQIIGS  612 (673)
Q Consensus       560 dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~--s~k~ld~~~~~~~~~il~~  612 (673)
                      .++||+.|.   .++|.|..|.+.|.+++||...  .+..||+...++..+.+.+
T Consensus         1 rv~iiGgG~---ig~E~A~~l~~~G~~Vtiie~~~~~l~~~d~~~~~~~~~~l~~   52 (82)
T pfam00070         1 RVVVVGGGY---IGLEFASALAKLGSKVTVVERRDRLLRGFDEEIAKILQEKLEK   52 (82)
T ss_pred             CEEEECCCH---HHHHHHHHHHHCCCEEEEECCCCCCCHHCCHHHHHHHHHHHHH
T ss_conf             999999889---9999999998639278998125733022798899999999986


No 209
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=80.11  E-value=1.5  Score=23.10  Aligned_cols=12  Identities=8%  Similarity=0.285  Sum_probs=6.4

Q ss_pred             HHHCCCCCCCHH
Q ss_conf             010032576200
Q gi|254780655|r  411 SGRYLHYGVREH  422 (673)
Q Consensus       411 p~r~i~~GIaE~  422 (673)
                      |...|+||-+--
T Consensus       409 pr~wincgqagp  420 (592)
T COG3960         409 PRHWINCGQAGP  420 (592)
T ss_pred             CCCEEECCCCCC
T ss_conf             744010476677


No 210
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component; InterPro: IPR010199   This entry describes an NADPH-dependent sulphite reductase flavoprotein subunit. Most members of the proteins of this entry are found in Cys biosynthesis gene clusters. The closest homologues are designated as subunits nitrate reductase.; GO: 0004783 sulfite reductase (NADPH) activity, 0000103 sulfate assimilation, 0019344 cysteine biosynthetic process.
Probab=80.03  E-value=4.2  Score=19.77  Aligned_cols=20  Identities=10%  Similarity=-0.074  Sum_probs=8.4

Q ss_pred             CEEEEECCCCHHHHHHHHHH
Q ss_conf             77998565201899999997
Q gi|254780655|r   73 DRFVLSAGHGSMLYYALLYL   92 (673)
Q Consensus        73 Dr~v~s~GH~s~~~Y~~~~l   92 (673)
                      +-=|+|.....-+--..+.|
T Consensus        69 ~vTilygSQTGNAr~~A~~l   88 (628)
T TIGR01931        69 EVTILYGSQTGNARRLAKAL   88 (628)
T ss_pred             EEEEEEECCCCHHHHHHHHH
T ss_conf             79999701134278999999


No 211
>PRK13984 putative oxidoreductase; Provisional
Probab=77.57  E-value=4.6  Score=19.52  Aligned_cols=27  Identities=26%  Similarity=0.185  Sum_probs=15.7

Q ss_pred             EECCHHHHHHHHHHHHCC--CCCCEEEEE
Q ss_conf             112012457777652025--678349995
Q gi|254780655|r  502 RPADSIETLECWQVALKE--KNRPSVLSL  528 (673)
Q Consensus       502 ~P~d~~E~~~~~~~al~~--~~gP~~ir~  528 (673)
                      .|++..|+..+....++-  .-.|.-|..
T Consensus       462 MPA~~~Ev~~A~EEGV~f~~~~~P~ei~~  490 (604)
T PRK13984        462 MPADMEEIEEGLEEGVKIYPGWGPMEVVI  490 (604)
T ss_pred             CCCCHHHHHHHHHCCCEEEECCCCEEEEE
T ss_conf             89988988999868878994777689994


No 212
>TIGR02483 PFK_mixed phosphofructokinase; InterPro: IPR012829    Members of this family that are characterised, save one, are phosphofructokinases dependent on pyrophosphate (2.7.1.90 from EC) rather than ATP (2.7.1.11 from EC). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.; GO: 0005524 ATP binding, 0008443 phosphofructokinase activity, 0006002 fructose 6-phosphate metabolic process, 0006096 glycolysis.
Probab=75.06  E-value=5.8  Score=18.81  Aligned_cols=108  Identities=21%  Similarity=0.202  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHCCCEEE----------CCCCCCCCCCCCCHHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCC-
Q ss_conf             001245411110000130----------245433333333101000222101110122112112012457777652025-
Q gi|254780655|r  451 SRPAIRLASLMGIRVIHV----------LTHDSIGLGEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKE-  519 (673)
Q Consensus       451 ~~~~ir~~al~~~~v~~v----------~th~gi~~G~DGpTHq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~-  519 (673)
                      |-|-+|.=|-++.+|..+          .=|+|++-|+|          ..  .||    =.|.|=+++..-++...+. 
T Consensus       163 AlDRLhtTAeSH~RVmVvEVMGRhAGWIAL~sG~aGGAd----------~I--LIP----E~P~d~~~v~~~v~~r~~~G  226 (339)
T TIGR02483       163 ALDRLHTTAESHHRVMVVEVMGRHAGWIALHSGIAGGAD----------VI--LIP----EIPFDIDSVCEKVRERFARG  226 (339)
T ss_pred             HHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCCC----------EE--EEC----CCCCCHHHHHHHHHHHHHCC
T ss_conf             875240058731948999984854579998843520876----------78--978----60488899999999998726


Q ss_pred             CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCC--CEEEEECCHHHHHHHHHHHHHHHC-CCCEEEE
Q ss_conf             6783499952444433456655322123473799856997--299995268899999999999973-9943998
Q gi|254780655|r  520 KNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTPNA--QVTIFSSGSELKIAVEACEILSSR-NISTRVV  590 (673)
Q Consensus       520 ~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~~~--dv~iia~G~~v~~al~aa~~L~~~-Gi~~~Vi  590 (673)
                      ++=| .|..+=+..|.     .....+..+.   . ..-.  .+.|=+.|..+      |++|++. |+++|++
T Consensus       227 ~~f~-ivVVAEGa~p~-----~G~~~~~~~~---~-d~~g~G~~RLGGiG~~l------A~~i~~rtg~E~R~~  284 (339)
T TIGR02483       227 KRFA-IVVVAEGAKPK-----GGEMVVQEGV---K-DAFGFGHVRLGGIGNWL------AEEIERRTGIETRAT  284 (339)
T ss_pred             CCCC-EEEEECCCCCC-----CCCEEECCCC---C-CCCCCCCEECCCHHHHH------HHHHHHHCCCCEEEE
T ss_conf             6752-58997263267-----8714100564---2-34676650013218899------999998719822035


No 213
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=75.06  E-value=5.4  Score=19.03  Aligned_cols=14  Identities=14%  Similarity=0.197  Sum_probs=7.3

Q ss_pred             ECCHHHHHHHHHHH
Q ss_conf             12012457777652
Q gi|254780655|r  503 PADSIETLECWQVA  516 (673)
Q Consensus       503 P~d~~E~~~~~~~a  516 (673)
                      |+...|+..+....
T Consensus       507 PA~~~Ev~~A~EEG  520 (654)
T PRK12769        507 PGSKKEVKNAREEG  520 (654)
T ss_pred             CCCHHHHHHHHHCC
T ss_conf             98756655788568


No 214
>PRK12831 putative oxidoreductase; Provisional
Probab=73.17  E-value=6.4  Score=18.49  Aligned_cols=12  Identities=25%  Similarity=0.354  Sum_probs=8.4

Q ss_pred             CCEEEEECCHHH
Q ss_conf             729999526889
Q gi|254780655|r  559 AQVTIFSSGSEL  570 (673)
Q Consensus       559 ~dv~iia~G~~v  570 (673)
                      .|.+|+|.|...
T Consensus       385 ~D~Vi~AiGq~~  396 (464)
T PRK12831        385 VDTVIMSLGTSP  396 (464)
T ss_pred             CCEEEECCCCCC
T ss_conf             999999986898


No 215
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=71.25  E-value=7  Score=18.19  Aligned_cols=10  Identities=20%  Similarity=0.448  Sum_probs=6.6

Q ss_pred             CCEEEEECCH
Q ss_conf             7299995268
Q gi|254780655|r  559 AQVTIFSSGS  568 (673)
Q Consensus       559 ~dv~iia~G~  568 (673)
                      .|.+|+|.|.
T Consensus       391 aD~VI~AiGq  400 (472)
T PRK12810        391 ADLVLLAMGF  400 (472)
T ss_pred             CCEEEECCCC
T ss_conf             9999998888


No 216
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily  includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which  binds to Adenosine group.  This subfamily   of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=70.71  E-value=7.2  Score=18.11  Aligned_cols=57  Identities=11%  Similarity=0.121  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC-CCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf             999999999999853426887678459998436-21143445578876522022330699962763223
Q gi|254780655|r  136 IANAVGMAIAERKLREEFGDVLIDHYTYVLVGD-GCLMEGISQEAISFAGHLGLSKLIVLWDNNGISID  203 (673)
Q Consensus       136 is~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGD-G~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~  203 (673)
                      +=.++=+++|.+.++.         ++.|+..| +-+.++..-+|..+|..++++ ++ +++.+.++..
T Consensus         9 VDSs~la~la~~alG~---------~v~aV~~~s~~~~~~E~e~a~~~a~~~gi~-~~-~i~~~~l~~~   66 (202)
T cd01990           9 VDSTLLLKAAVDALGD---------RVLAVTATSPLFPRRELEEAKRLAKEIGIR-HE-VIETDELDDP   66 (202)
T ss_pred             HHHHHHHHHHHHHHCC---------CEEEEEEECCCCCHHHHHHHHHHHHHCCCC-EE-EEECCHHHHH
T ss_conf             9999999999997687---------879999727989978999999999863985-79-9734111016


No 217
>pfam00656 Peptidase_C14 Caspase domain.
Probab=69.31  E-value=6.6  Score=18.38  Aligned_cols=72  Identities=17%  Similarity=0.197  Sum_probs=40.7

Q ss_pred             EEEEEECCCCCCCCCCCCC--CCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCC
Q ss_conf             0699962763223223556--78217998864144444444440678888888751102210222013345557
Q gi|254780655|r  191 LIVLWDNNGISIDGPISLA--DSTDQYARFRASGWNTLSVNGHDHHAITSTLRKAQLSDKPTMIACETVIGFGS  262 (673)
Q Consensus       191 li~i~d~N~~si~~~~~~~--~~~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T~kG~G~  262 (673)
                      +.+|+++|.+.-..+....  ....+...|+.+||.|...+.=+..++.+++++......+.=..+--+.|+|.
T Consensus         2 ~ALIIgn~~y~~~~~l~g~~~Da~~l~~~l~~lgF~v~~~~n~t~~~~~~~l~~~~~~~~~~d~~vv~~~gHG~   75 (230)
T pfam00656         2 LALIIGNNYFGHAAPLRGCDNDAEALAELLQRLGFEVEVIDDLTAEEIRRALREFAKRADPGDSFVVVYSGHGV   75 (230)
T ss_pred             EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf             89999732479964478979999999999998899899960699899999999998547789889999916764


No 218
>TIGR02371 ala_DH_arch alanine dehydrogenase; InterPro: IPR012742   This enzyme, a homologue of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other archaea..
Probab=68.89  E-value=5.5  Score=18.99  Aligned_cols=18  Identities=28%  Similarity=0.421  Sum_probs=8.6

Q ss_pred             HHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf             985342688767845999843621
Q gi|254780655|r  147 RKLREEFGDVLIDHYTYVLVGDGC  170 (673)
Q Consensus       147 k~~~~~~~~~~~d~~v~~iiGDG~  170 (673)
                      |||+.|      |.+++-+||=|.
T Consensus       122 KYLArk------dssv~G~iGaG~  139 (327)
T TIGR02371       122 KYLARK------DSSVLGLIGAGR  139 (327)
T ss_pred             HHHHHC------CCCEEEEEECCH
T ss_conf             544301------663355763685


No 219
>pfam10740 DUF2529 Protein of unknown function (DUF2529). This family is conserved in the Bacillales. The function is not known. Several members are annotated as being YWJG, a protein expressed downstream of pyrG, a gene encoding for cytidine triphosphate synthetase.
Probab=66.05  E-value=8.9  Score=17.45  Aligned_cols=36  Identities=28%  Similarity=0.211  Sum_probs=30.0

Q ss_pred             CCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             997299995268899999999999973994399857
Q gi|254780655|r  557 PNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSV  592 (673)
Q Consensus       557 ~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~  592 (673)
                      ....|.|++-.+.=.++.+.+++|.++|+++-.|+.
T Consensus        81 ~tDRVLlfs~~~~d~e~~~~a~~L~~~gi~~v~Vs~  116 (172)
T pfam10740        81 ETDRVLLFSRFSNDEEAVALAKKLYDQGIDVVAVSP  116 (172)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             557699976999978999999999986998899816


No 220
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=65.80  E-value=9  Score=17.42  Aligned_cols=20  Identities=10%  Similarity=-0.064  Sum_probs=9.2

Q ss_pred             HHHHHHCCCCCCCHHHHHHHHCC
Q ss_conf             99999707688998898640003
Q gi|254780655|r   87 YALLYLLGYQDVTIEDIKNFRTI  109 (673)
Q Consensus        87 Y~~~~l~G~~~~~~e~l~~~r~~  109 (673)
                      |..+.-.|..   .+.++.+|+.
T Consensus        62 yi~~i~~g~~---~eA~~~i~~~   81 (560)
T PRK12771         62 WLALARGGDY---EDAWRRLVED   81 (560)
T ss_pred             HHHHHHCCCH---HHHHHHHHHH
T ss_conf             9999987899---9999999874


No 221
>TIGR02482 PFKA_ATP 6-phosphofructokinase; InterPro: IPR012828    6-phosphofructokinase (2.7.1.11 from EC) catalyses the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This entry contains bacterial ATP-dependent 6-phosphofructokinases, which lack a beta-hairpin loop present in IPR012829 from INTERPRO family members. IPR012829 from INTERPRO contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. IPR011183 from INTERPRO represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (2.7.1.90 from EC).; GO: 0003872 6-phosphofructokinase activity, 0005524 ATP binding, 0006002 fructose 6-phosphate metabolic process, 0006096 glycolysis.
Probab=65.20  E-value=5.4  Score=19.01  Aligned_cols=36  Identities=25%  Similarity=0.334  Sum_probs=26.7

Q ss_pred             CCCCCEEEEECCHHHHHHHHHHHHHH-HC-CCCEEEEE
Q ss_conf             69972999952688999999999999-73-99439985
Q gi|254780655|r  556 TPNAQVTIFSSGSELKIAVEACEILS-SR-NISTRVVS  591 (673)
Q Consensus       556 ~~~~dv~iia~G~~v~~al~aa~~L~-~~-Gi~~~Vi~  591 (673)
                      .+...++|++.|..+..+.+.|++++ ++ |+++||.=
T Consensus       211 ~k~~SiI~~ae~~~~g~~~e~A~~iene~~g~~tR~~v  248 (302)
T TIGR02482       211 GKKNSIIIVAEGNILGNAKEVAKKIENEKTGIETRVTV  248 (302)
T ss_pred             CCCCCEEEEEEEEECCCHHHHHHHHHCCCCCCEEEEEE
T ss_conf             89961899995101477678887630478984289999


No 222
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=64.75  E-value=9.4  Score=17.29  Aligned_cols=16  Identities=13%  Similarity=0.200  Sum_probs=6.9

Q ss_pred             CCHHHHHHHHHHHHHH
Q ss_conf             2688999999999999
Q gi|254780655|r  566 SGSELKIAVEACEILS  581 (673)
Q Consensus       566 ~G~~v~~al~aa~~L~  581 (673)
                      .|..++.+++=+..|.
T Consensus       294 aGQG~Nlgi~Da~~La  309 (386)
T PRK07494        294 GAQGLNLGLRDVADLV  309 (386)
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             2005766699999999


No 223
>PRK11749 putative oxidoreductase; Provisional
Probab=64.01  E-value=9.7  Score=17.19  Aligned_cols=11  Identities=27%  Similarity=0.353  Sum_probs=7.2

Q ss_pred             CCEEEEECCHH
Q ss_conf             72999952688
Q gi|254780655|r  559 AQVTIFSSGSE  569 (673)
Q Consensus       559 ~dv~iia~G~~  569 (673)
                      .|.+|+|.|..
T Consensus       379 aD~Vi~AiG~~  389 (460)
T PRK11749        379 ADMVIKAIGQT  389 (460)
T ss_pred             CCEEEECCCCC
T ss_conf             99999998789


No 224
>TIGR01658 EYA-cons_domain EYA conserved domain; InterPro: IPR006545   The Eyes absent proteins are members of a conserved regulatory network implicated in the development of the eye, muscle, kidney and ear. Eyes absent is a nuclear transcription factor, acting through interaction with homeodomain-containing Sine oculis (also known as Six) proteins. Eyes absent is also a protein tyrosine phosphatase , , It does not resemble the classical tyrosine phosphatases that use cysteine as a nucleophile and proceed by means of a thiol-phosphate intermediate. Rather, Eyes absent is the prototype for a class of protein tyrosine phosphatases that use a nucleophilic aspartic acid in a metal-dependent reaction. Furthermore, the phosphatase activity of Eyes absent contributes to its ability to induce eye formation in drosophila. Thus, Eyes absent belongs to the phosphatase subgroup of the haloacid dehalogenase (HAD) superfamily and appears to act as a nuclear transcriptional coactivator with intrinsic phosphatase activity.  The Eyes absent proteins contain a divergent 200300-residue, amino-terminal region and a conserved carboxy-terminal domain of 271274 residues (EYA domain), which is critical for activity and believed to participate in proteinprotein interactions ; GO: 0007275 multicellular organismal development.
Probab=63.47  E-value=5.1  Score=19.19  Aligned_cols=36  Identities=11%  Similarity=0.057  Sum_probs=23.7

Q ss_pred             EEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCH
Q ss_conf             79985699729999526889999999999997399439985746581
Q gi|254780655|r  551 YDYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFEL  597 (673)
Q Consensus       551 ~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~  597 (673)
                      +++.|=+.|.++.++.|-.-.|+. ||+++          ++|++|.
T Consensus       266 rI~~RF~~Pk~~yv~IGDG~eEe~-AA~~~----------~~PF~kI  301 (319)
T TIGR01658       266 RIKERFGKPKVRYVVIGDGREEET-AAKAM----------NWPFVKI  301 (319)
T ss_pred             HHHHHCCCCCEEEEEEECCHHHHH-HHHHH----------CCCEEEE
T ss_conf             444204879158998607818999-99983----------5983898


No 225
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=63.43  E-value=6.2  Score=18.58  Aligned_cols=99  Identities=26%  Similarity=0.268  Sum_probs=55.3

Q ss_pred             CHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHH-HHH---HHHCCCEEECCCCCCCCCCCCCHHHHCCCCCHHHHH
Q ss_conf             2002356787998728876220010035553001245-411---110000130245433333333101000222101110
Q gi|254780655|r  420 REHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIR-LAS---LMGIRVIHVLTHDSIGLGEDGPTHQPVEHLAALRAI  495 (673)
Q Consensus       420 aE~~~~~~aaGla~~~g~~p~~~tf~~F~~~~~~~ir-~~a---l~~~~v~~v~th~gi~~G~DGpTHq~iedia~lr~i  495 (673)
                      ||..-++++||..+. |-+|-.-.  +-+- .-+.|. +++   .-++|..++.+|-|. ++|+=|.+     +.+=|.+
T Consensus        50 REEeg~GIcAGa~lA-Gkk~ailm--QnsG-lGNsiNal~SL~~ty~iPl~ml~ShRG~-~~E~i~AQ-----VpmGr~~  119 (172)
T COG4032          50 REEEGVGICAGAYLA-GKKPAILM--QNSG-LGNSINALASLYVTYKIPLLMLASHRGV-LKEGIEAQ-----VPMGRAL  119 (172)
T ss_pred             CHHCCEEEEHHHHHC-CCCCEEEE--ECCC-CCHHHHHHHHHHHHHCCCHHHHHHCCCH-HHCCCCCC-----CCCCHHH
T ss_conf             010250210245542-89967988--4367-3168999999998742235552011341-30377313-----6421215


Q ss_pred             C------CCCEEEECCHHHHHH----HHHHHHCCCCCCEEEEEC
Q ss_conf             1------221121120124577----776520256783499952
Q gi|254780655|r  496 P------DLLVLRPADSIETLE----CWQVALKEKNRPSVLSLS  529 (673)
Q Consensus       496 P------nl~v~~P~d~~E~~~----~~~~al~~~~gP~~ir~~  529 (673)
                      |      ++-.+.|-.+.|...    ++..+++. ..|+++.++
T Consensus       120 ~kiLe~~~lpt~t~~~p~Ea~~li~~~~~~a~~~-s~pv~vlls  162 (172)
T COG4032         120 PKILEGLELPTYTIIGPEEALPLIENAILDAFEN-SRPVAVLLS  162 (172)
T ss_pred             HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHC-CCCEEEEEC
T ss_conf             8999656886314578888887787899999871-786599945


No 226
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=63.18  E-value=10  Score=17.09  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=9.4

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             99843621143445578876522022
Q gi|254780655|r  163 YVLVGDGCLMEGISQEAISFAGHLGL  188 (673)
Q Consensus       163 ~~iiGDG~l~eG~~~EAl~~A~~~~l  188 (673)
                      ++++|-|-+    ..|........++
T Consensus       140 vvViGgG~I----GlE~A~~l~~~G~  161 (427)
T TIGR03385       140 VVIIGGGYI----GLEMVEALRERGK  161 (427)
T ss_pred             EEEECCCHH----HHHHHHHHHHCCC
T ss_conf             999996399----9999999997699


No 227
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=63.05  E-value=10  Score=17.07  Aligned_cols=63  Identities=17%  Similarity=0.197  Sum_probs=30.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHH
Q ss_conf             68888999999999999999999738897643136899999984332544577898878877998565201899999997
Q gi|254780655|r   13 MKYDDDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYALLYL   92 (673)
Q Consensus        13 ~~~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~~~l   92 (673)
                      -++++.|    .+.|..+|+.+-   +-|.|-.+.  +=           ...||-..  |          .--|..+.-
T Consensus        75 ~t~s~~l----~~~R~~~L~~il---~~H~~dC~a--PC-----------~~aCPa~~--d----------Ip~yi~~I~  122 (652)
T PRK12814         75 ETENAEL----HAMRRQSLERLI---EQHCGDCLG--PC-----------ELACPAGC--N----------IPGFIAAIA  122 (652)
T ss_pred             EECCHHH----HHHHHHHHHHHH---HHHCCCCCC--CH-----------HCCCCCCC--C----------HHHHHHHHH
T ss_conf             9589999----999999999997---642684658--10-----------00399999--9----------999999998


Q ss_pred             CCCCCCCHHHHHHHHCCC
Q ss_conf             076889988986400038
Q gi|254780655|r   93 LGYQDVTIEDIKNFRTIG  110 (673)
Q Consensus        93 ~G~~~~~~e~l~~~r~~~  110 (673)
                      .|..   .+.++-.|+..
T Consensus       123 ~G~~---~eA~~vi~e~n  137 (652)
T PRK12814        123 RGDD---REAIRIIKETI  137 (652)
T ss_pred             CCCH---HHHHHHHHHHC
T ss_conf             7899---99999998758


No 228
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=62.43  E-value=10  Score=17.00  Aligned_cols=15  Identities=40%  Similarity=0.581  Sum_probs=7.2

Q ss_pred             CHHHHHHHHHHHHHH
Q ss_conf             688999999999999
Q gi|254780655|r  567 GSELKIAVEACEILS  581 (673)
Q Consensus       567 G~~v~~al~aa~~L~  581 (673)
                      |..+..+++=+..|.
T Consensus       290 GQGlNlgi~Dv~~L~  304 (374)
T PRK06617        290 GQGLNQGIKDIEILS  304 (374)
T ss_pred             CCCCCHHHHHHHHHH
T ss_conf             260012299999999


No 229
>TIGR02875 spore_0_A sporulation transcription factor Spo0A; InterPro: IPR012052   Members of this group are response regulators/transcription factors that contain CheY-like receiver (phosphoacceptor) domain and a unique DNA-binding domain. Spo0A controls the entry of Bacillus subtilis into the developmental process of sporulation . Activation of the Spo0A transcription factor by phosphorylation serves as a developmental checkpoint and to integrate several physiological signals that control entry into the sporulation pathway. The signals are generated by conditions of nutrient deprivation, high cell density, the Krebs cycle, DNA replication, DNA damage, and some aspect of the chromosome partitioning machinery .  Activated Spo0A has multiple functions . It represses promoters (such as the abrB promoter) by binding to sites (0A boxes) downstream from the transcription start site. Spo0A also activates transcription from promoters used by two forms of RNA polymerase that differ by containing either the major sigma factor, sigma A (e.g. the spoIIE and spoIIG promoters) or the alternate sigma factor, sigma H (e.g. the spoIIA promoter). At promoters activated by Spo0A, the 0A boxes lie upstream of the transcription-initiation site.; GO: 0003677 DNA binding, 0005509 calcium ion binding, 0000160 two-component signal transduction system (phosphorelay), 0042173 regulation of sporulation, 0045449 regulation of transcription, 0050906 detection of stimulus during sensory perception.
Probab=62.03  E-value=10  Score=16.95  Aligned_cols=25  Identities=16%  Similarity=0.231  Sum_probs=12.8

Q ss_pred             CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf             01245777765202567834999524444334
Q gi|254780655|r  505 DSIETLECWQVALKEKNRPSVLSLSRQNLPFL  536 (673)
Q Consensus       505 d~~E~~~~~~~al~~~~gP~~ir~~R~~~p~~  536 (673)
                      .+--+..+.|+|++=       -.+||++..+
T Consensus       211 TaSRVERAIRHAIEv-------AWsRG~~E~i  235 (270)
T TIGR02875       211 TASRVERAIRHAIEV-------AWSRGNIELI  235 (270)
T ss_pred             CCCHHHHHHHHHHHH-------CCCCCCCCCC
T ss_conf             964466766646342-------0258862101


No 230
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=61.94  E-value=10  Score=16.94  Aligned_cols=106  Identities=18%  Similarity=0.134  Sum_probs=45.9

Q ss_pred             EEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99856520189999999707688998898640003887988988-88998730688863147999999999999853426
Q gi|254780655|r   75 FVLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPE-YGSCAGIEATTGPLGQGIANAVGMAIAERKLREEF  153 (673)
Q Consensus        75 ~v~s~GH~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe-~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~  153 (673)
                      ++-.+|+.+.-++..+ -.|         ..|..+-+.| |+|. .....-|-+-.|-.  |++...-.|.+.+   .. 
T Consensus        62 V~q~vGksT~~L~~~l-~~G---------D~i~DivGPL-G~Ps~Ie~~G~Vv~VgGGv--GiApv~PiakaLk---e~-  124 (993)
T PRK12775         62 VVQALGKTTREMRDKF-KAG---------DTFEDFVGPL-GLPQHIDKAGHVVFVGGGL--GVAPIFPQLRAFK---EA-  124 (993)
T ss_pred             EEEECCHHHHHHHHHC-CCC---------CEEEECCCCC-CCCCCCCCCCEEEEEECCE--EHHHHHHHHHHHH---HC-
T ss_conf             9996487299999622-589---------8773326679-9964102577399990877--4302389999999---85-


Q ss_pred             CCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC
Q ss_conf             88767845999843621143445578876522022330699962763223223
Q gi|254780655|r  154 GDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPI  206 (673)
Q Consensus       154 ~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~  206 (673)
                           .++|.+++|--.- +=..||--.-+-   .++|++.-||-.+..-|.+
T Consensus       125 -----GN~V~~IiGaR~k-dlvilede~~~~---sdel~i~TDDGS~G~kG~V  168 (993)
T PRK12775        125 -----GARTTAIMGFRNK-DLVFWEDKFREY---ADDLIICTDDGSYGEPGFV  168 (993)
T ss_pred             -----CCEEEEEEECCCC-CCEEHHHHHHHH---CCCEEEECCCCCCCCCCEE
T ss_conf             -----9908999842660-023349999864---6838997689998756420


No 231
>PRK06184 hypothetical protein; Provisional
Probab=61.74  E-value=11  Score=16.91  Aligned_cols=26  Identities=12%  Similarity=0.018  Sum_probs=15.0

Q ss_pred             CHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             00100325762002356787998728
Q gi|254780655|r  410 FSGRYLHYGVREHAMAAAMNGIALHK  435 (673)
Q Consensus       410 ~p~r~i~~GIaE~~~~~~aaGla~~~  435 (673)
                      +.++=.+.||+-.+.-+.--.+.++|
T Consensus       300 ~gGqGmN~Gi~DA~NLaWKLa~vl~G  325 (503)
T PRK06184        300 AGGQGLNTSIQDAYNLGWKLAAVLAG  325 (503)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             65663333155678899999999729


No 232
>PRK07208 hypothetical protein; Provisional
Probab=59.82  E-value=11  Score=16.68  Aligned_cols=11  Identities=27%  Similarity=0.196  Sum_probs=5.2

Q ss_pred             HHHHHHHHCCC
Q ss_conf             99999997399
Q gi|254780655|r  575 EACEILSSRNI  585 (673)
Q Consensus       575 ~aa~~L~~~Gi  585 (673)
                      .+.+.|.+-|+
T Consensus       370 ~~~~~L~~~gl  380 (474)
T PRK07208        370 LATQELASLGL  380 (474)
T ss_pred             HHHHHHHHHCC
T ss_conf             99999998089


No 233
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=57.98  E-value=12  Score=16.47  Aligned_cols=93  Identities=19%  Similarity=0.276  Sum_probs=51.9

Q ss_pred             CCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEE--CCCCCEEE----EECCHH
Q ss_conf             122112112012457777652025678349995244443345665532212347379985--69972999----952688
Q gi|254780655|r  496 PDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYIS--TPNAQVTI----FSSGSE  569 (673)
Q Consensus       496 Pnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~--~~~~dv~i----ia~G~~  569 (673)
                      .|+.|+.| |.--+..+-.+|= .-+-|.++.+-|-..+....   ....+..  ..++.  =+|.+++|    |.+|. 
T Consensus       208 ~~~vVVSP-D~Ggv~RA~~~A~-~L~~~laii~KrR~~s~v~~---~~n~i~~--~~~lggdV~GK~~IIvDDmIdTgg-  279 (381)
T PRK06827        208 ENLVVISP-DTGAMDRAKYYSS-VLKVPLGLFYKRRDYSTVVN---GKNPIVV--HELLGRDVEGKDVFIVDDMIASGG-  279 (381)
T ss_pred             CCCEEEEC-CCCCHHHHHHHHH-HCCCCEEEEEEECCCCCCCC---CCCCEEE--EEEECCCCCCCEEEEECCCCCCCH-
T ss_conf             77779926-9973899999999-71989899997646764456---6784367--524135567988999724314526-


Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCCHHC
Q ss_conf             999999999999739943998574658100
Q gi|254780655|r  570 LKIAVEACEILSSRNISTRVVSVPCFELFF  599 (673)
Q Consensus       570 v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld  599 (673)
                        ..++||+.|+++|-+ +|+-+.+.-.|-
T Consensus       280 --Tl~~aA~~Lk~~GA~-~V~a~aTHgvfS  306 (381)
T PRK06827        280 --SVLDAAKELKSRGAK-KIICAVSFPFFT  306 (381)
T ss_pred             --HHHHHHHHHHHCCCC-EEEEEEECHHCC
T ss_conf             --899999999987998-899999736604


No 234
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=57.89  E-value=12  Score=16.46  Aligned_cols=14  Identities=14%  Similarity=0.406  Sum_probs=6.0

Q ss_pred             CHHHHHHHHHHHHH
Q ss_conf             68899999999999
Q gi|254780655|r  567 GSELKIAVEACEIL  580 (673)
Q Consensus       567 G~~v~~al~aa~~L  580 (673)
                      |..++.+++=+..|
T Consensus       299 GQG~Nlgl~Da~~L  312 (392)
T PRK08773        299 GQGVNLGLRDVAAL  312 (392)
T ss_pred             CCHHHHHHHHHHHH
T ss_conf             55340559999999


No 235
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=57.87  E-value=12  Score=16.46  Aligned_cols=38  Identities=13%  Similarity=0.110  Sum_probs=23.6

Q ss_pred             CCCCEEEEECCHHHHHHHHHHHHHHHCCC-CEEEEECCCCCH
Q ss_conf             99729999526889999999999997399-439985746581
Q gi|254780655|r  557 PNAQVTIFSSGSELKIAVEACEILSSRNI-STRVVSVPCFEL  597 (673)
Q Consensus       557 ~~~dv~iia~G~~v~~al~aa~~L~~~Gi-~~~Vi~~~s~k~  597 (673)
                      .|.+|++|+-|...--|...|.+|   |- +++++.-++.+-
T Consensus       577 ~Gk~VvVIGGGntAmD~artA~Rl---GAe~V~ivyRR~~~e  615 (760)
T PRK12778        577 FGKNVAVIGGGNTAMDSVRTAKRL---GAERAMIIYRRSEEE  615 (760)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC---CCCEEEEEECCCHHC
T ss_conf             698899999976099999999983---998699970377211


No 236
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=57.66  E-value=12  Score=16.43  Aligned_cols=17  Identities=24%  Similarity=0.206  Sum_probs=9.9

Q ss_pred             EECCHHHHHHHHHHHHC
Q ss_conf             11201245777765202
Q gi|254780655|r  502 RPADSIETLECWQVALK  518 (673)
Q Consensus       502 ~P~d~~E~~~~~~~al~  518 (673)
                      .|++..|...+....++
T Consensus       705 MPA~~eEie~A~EEGVe  721 (1012)
T TIGR03315       705 MPASREELEEALEDGVD  721 (1012)
T ss_pred             CCCCHHHHHHHHHCCEE
T ss_conf             89998999877753817


No 237
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=57.30  E-value=12  Score=16.39  Aligned_cols=21  Identities=5%  Similarity=0.433  Sum_probs=8.0

Q ss_pred             EEEECCH---HHHHHHHHHHHHHH
Q ss_conf             9995268---89999999999997
Q gi|254780655|r  562 TIFSSGS---ELKIAVEACEILSS  582 (673)
Q Consensus       562 ~iia~G~---~v~~al~aa~~L~~  582 (673)
                      .++++|.   .+..+--.++.+++
T Consensus       378 l~~a~GH~~~G~~lap~tg~lvA~  401 (410)
T PRK12409        378 VFYNTGHGHLGWTLSAATADLVAQ  401 (410)
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHH
T ss_conf             999978812577899999999999


No 238
>PRK11595 gluconate periplasmic binding protein; Provisional
Probab=57.10  E-value=13  Score=16.37  Aligned_cols=26  Identities=19%  Similarity=0.381  Sum_probs=18.6

Q ss_pred             EEECCHHHHHHHHHHHHHHHCCC-CEEEEE
Q ss_conf             99526889999999999997399-439985
Q gi|254780655|r  563 IFSSGSELKIAVEACEILSSRNI-STRVVS  591 (673)
Q Consensus       563 iia~G~~v~~al~aa~~L~~~Gi-~~~Vi~  591 (673)
                      +++||+++.   ++|+.|.+.|. +|.|+.
T Consensus       196 V~TTGaTl~---~~a~~L~~aGa~~V~v~~  222 (227)
T PRK11595        196 VVTTGSTVA---EIAQLLLRNGAATVQVWC  222 (227)
T ss_pred             CCCCHHHHH---HHHHHHHHHCCCEEEEEE
T ss_conf             146399999---999999980998799999


No 239
>PRK06126 hypothetical protein; Provisional
Probab=56.32  E-value=13  Score=16.28  Aligned_cols=14  Identities=21%  Similarity=0.394  Sum_probs=9.4

Q ss_pred             HHCCCCEEEEECCC
Q ss_conf             97399439985746
Q gi|254780655|r  581 SSRNISTRVVSVPC  594 (673)
Q Consensus       581 ~~~Gi~~~Vi~~~s  594 (673)
                      ...|+.++|++++.
T Consensus       491 ~~~~~~~~~~~~~~  504 (545)
T PRK06126        491 AALGVPLAVVDLPR  504 (545)
T ss_pred             HHCCCCEEEEECCC
T ss_conf             87198459997676


No 240
>PRK04926 dgt deoxyguanosinetriphosphate triphosphohydrolase; Provisional
Probab=56.22  E-value=13  Score=16.27  Aligned_cols=54  Identities=26%  Similarity=0.295  Sum_probs=34.4

Q ss_pred             CCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH-HH
Q ss_conf             57789887887799856520189999999707688998898640003887988988889987306888631479999-99
Q gi|254780655|r   63 DPQCPYWPNRDRFVLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANA-VG  141 (673)
Q Consensus        63 ~~~~p~~~~rDr~v~s~GH~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a-~G  141 (673)
                      |..+|...+|||+|+|.                         .||++.++|+-||- ++.+++..   .|-|+|=+| +|
T Consensus        27 ~~r~~FerD~dRII~S~-------------------------aFRRLq~KTQVF~l-~~~D~~RT---RLTHSLEVaqIg   77 (503)
T PRK04926         27 EILRIFESDRGRIINSA-------------------------AIRRLQQKTQVFPL-ERNAAVRS---RLTHSLEVQQVG   77 (503)
T ss_pred             HHCCCCCCCCCHHHCCH-------------------------HHHHCCCCCEECCC-CCCCCCCC---CHHHHHHHHHHH
T ss_conf             12074011457230678-------------------------77605567704406-99985278---415899999999


Q ss_pred             HHHH
Q ss_conf             9999
Q gi|254780655|r  142 MAIA  145 (673)
Q Consensus       142 ~A~a  145 (673)
                      --+|
T Consensus        78 Rsia   81 (503)
T PRK04926         78 RYIA   81 (503)
T ss_pred             HHHH
T ss_conf             9999


No 241
>pfam01494 FAD_binding_3 FAD binding domain. This domain is involved in FAD binding in a number of enzymes.
Probab=56.16  E-value=13  Score=16.26  Aligned_cols=17  Identities=18%  Similarity=0.221  Sum_probs=8.9

Q ss_pred             CCHHHHHHHHHHHHHHH
Q ss_conf             26889999999999997
Q gi|254780655|r  566 SGSELKIAVEACEILSS  582 (673)
Q Consensus       566 ~G~~v~~al~aa~~L~~  582 (673)
                      .|..+..|++=|-.|.+
T Consensus       300 ~GqG~n~aieDA~~La~  316 (349)
T pfam01494       300 GGQGLNTGIQDAFNLAW  316 (349)
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             54677589999999999


No 242
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=55.82  E-value=13  Score=16.23  Aligned_cols=60  Identities=20%  Similarity=0.281  Sum_probs=31.0

Q ss_pred             CEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECC-C-CCEEE----EECCHHHHHHHHHHHHHHHCCC
Q ss_conf             34999524444334566553221234737998569-9-72999----9526889999999999997399
Q gi|254780655|r  523 PSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTP-N-AQVTI----FSSGSELKIAVEACEILSSRNI  585 (673)
Q Consensus       523 P~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~-~-~dv~i----ia~G~~v~~al~aa~~L~~~Gi  585 (673)
                      |.+++.-|.+.+...........-..|++.+.... . .+|.|    ++||+++.   ++++.|++.|+
T Consensus       147 ~~~l~r~k~~~~q~~l~~~~rr~nl~~aF~~~~~~~~~~~vlLvDDV~TTGaTl~---~~~~~L~~~Ga  212 (225)
T COG1040         147 PIALRRVKDTSPQQGLKALERRRNLKGAFRLKKGIEEPKNVLLVDDVYTTGATLK---EAAKLLREAGA  212 (225)
T ss_pred             CHHHEECCCCCCCCCCCHHHHHHHCCCCEECCCCCCCCCCEEEEECCCCCHHHHH---HHHHHHHHCCC
T ss_conf             4211000067310045558999846056314787676772899940066679999---99999997599


No 243
>PRK09126 hypothetical protein; Provisional
Probab=55.76  E-value=13  Score=16.22  Aligned_cols=15  Identities=13%  Similarity=0.399  Sum_probs=6.4

Q ss_pred             CHHHHHHHHHHHHHH
Q ss_conf             688999999999999
Q gi|254780655|r  567 GSELKIAVEACEILS  581 (673)
Q Consensus       567 G~~v~~al~aa~~L~  581 (673)
                      |..++.+++=+..|.
T Consensus       297 GQG~Nlgl~Da~~La  311 (392)
T PRK09126        297 AHGFNLGLASQDILA  311 (392)
T ss_pred             CCHHHHHHHHHHHHH
T ss_conf             462757899999999


No 244
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=55.60  E-value=13  Score=16.20  Aligned_cols=14  Identities=29%  Similarity=0.074  Sum_probs=7.2

Q ss_pred             ECCHHHHHHHHHHH
Q ss_conf             12012457777652
Q gi|254780655|r  503 PADSIETLECWQVA  516 (673)
Q Consensus       503 P~d~~E~~~~~~~a  516 (673)
                      |++..|...+....
T Consensus       719 PA~~eEie~A~eEG  732 (1032)
T PRK09853        719 PAWREEYEEALHDG  732 (1032)
T ss_pred             CCCHHHHHHHHHCC
T ss_conf             99989999887547


No 245
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, catalytic subunit; InterPro: IPR000031   Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain . The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme .; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process, 0009320 phosphoribosylaminoimidazole carboxylase complex.
Probab=55.36  E-value=13  Score=16.17  Aligned_cols=104  Identities=26%  Similarity=0.252  Sum_probs=61.1

Q ss_pred             EEEEECCHHHHHHHHHHHHHHHCCC--CEEEEECC-CCCHHCCCCHHHHHHHCCCCC-EEE-EECC---CCHHHHHHHHC
Q ss_conf             9999526889999999999997399--43998574-658100086889996436797-799-9728---60278999845
Q gi|254780655|r  561 VTIFSSGSELKIAVEACEILSSRNI--STRVVSVP-CFELFFEQSDSYRAQIIGSSP-IKI-AIEA---GLRQGWDAFIG  632 (673)
Q Consensus       561 v~iia~G~~v~~al~aa~~L~~~Gi--~~~Vi~~~-s~k~ld~~~~~~~~~il~~~~-~~v-tiE~---g~~~g~~~~~~  632 (673)
                      .+|.++.|-...+-+|++.|++=||  +++|+|.+ |.+.+    .+|..+.-.++. .+| ++=+   ++++.++....
T Consensus         2 ~iIMGS~SD~~~m~~a~~~L~~fgi~~e~~V~SAHRTP~~~----~~ya~~a~~~G~P~ViIAgAGgaAHLPGmvAa~T~   77 (159)
T TIGR01162         2 GIIMGSDSDLETMKKAAEILEEFGIPYELRVVSAHRTPELM----FEYAKEAEERGIPKVIIAGAGGAAHLPGMVAALTT   77 (159)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHH----HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC
T ss_conf             68536725478999999999855996678986067780889----99999998678997998403511334010011478


Q ss_pred             CCCCEEEE----------C-----------------CCCCCCCHH-HHH--HHCCCCHHHHHHHHHHH
Q ss_conf             79818983----------5-----------------776768888-999--98099989999999998
Q gi|254780655|r  633 SDGSFIGM----------Q-----------------GFGASGSCD-LLY--QHFGINAIAIVDMVERK  670 (673)
Q Consensus       633 ~~~~~igi----------d-----------------~Fg~sg~~~-el~--~~~Gld~~~I~~~i~~~  670 (673)
                      ..  +|||          |                 ..|..|-.| -|+  +-+|+.-+.+.+|++++
T Consensus        78 ~P--VIGVPv~~~~l~G~DSLlSiVQMP~GvPVATvaig~aGA~NAAllAa~ILa~~~~~l~~kl~~~  143 (159)
T TIGR01162        78 LP--VIGVPVPSKALSGLDSLLSIVQMPAGVPVATVAIGNAGAKNAALLAAQILAIKDPELAEKLKEY  143 (159)
T ss_pred             CC--EEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             77--5503477342452135445430758974653003713278899999999726898899999999


No 246
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=55.01  E-value=14  Score=16.14  Aligned_cols=34  Identities=18%  Similarity=0.323  Sum_probs=19.5

Q ss_pred             CCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             8459998436211434455788765220223306999627
Q gi|254780655|r  159 DHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNN  198 (673)
Q Consensus       159 d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N  198 (673)
                      +.|-++|||=|-    .-+-|.-.|+..+++  +.++|.+
T Consensus        16 ~gkkV~IIGaGP----aGlsAA~~aa~~G~~--v~viEk~   49 (350)
T PRK12770         16 TGKKVAIIGAGP----AGLAAAGYLACLGHE--VHVYDKL   49 (350)
T ss_pred             CCCEEEEECCCH----HHHHHHHHHHHCCCC--EEEEEEC
T ss_conf             979899999558----899999999978998--5999536


No 247
>TIGR02025 BchH magnesium chelatase, H subunit; InterPro: IPR011771    This entry represents the H subunit of the magnesium chelatase complex responsible for magnesium insertion into the protoporphyrin IX ring in the biosynthesis of both chlorophyll and bacteriochlorophyll. In chlorophyll-utilizing species, this gene is known as ChlH, while in bacteriochlorophyll-utilizing spoecies it is called BchH. Subunit H is the largest (~140kDa) of the three subunits (the others being BchD/ChlD and BchI/ChlI), and is known to bind protoporphyrin IX. Subunit H is homologous to the CobN subunit of cobaltochelatase and by anology with that enzyme, subunit H is believed to also bind the magnesium ion which is inserted into the ring. In conjunction with the hydrolysis of ATP by subunits I and D, a conformation change is believed to happen in subunit H causing the magnesium ion insertion into the distorted protoporphyrin ring .; GO: 0016851 magnesium chelatase activity, 0015995 chlorophyll biosynthetic process.
Probab=54.69  E-value=9.6  Score=17.22  Aligned_cols=60  Identities=20%  Similarity=0.238  Sum_probs=40.7

Q ss_pred             CEEECCCCCCCC--C-CCCCHHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             013024543333--3-33310100022210111012211211201245777765202567834999
Q gi|254780655|r  465 VIHVLTHDSIGL--G-EDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLS  527 (673)
Q Consensus       465 v~~v~th~gi~~--G-~DGpTHq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir  527 (673)
                      |++++||.++.=  | +=|-|-.|==| .++..+||+.+|.==||-|..-|=|-++...  -+|+.
T Consensus       652 llHFGtHGslEfMPG~Q~Gltg~CWPD-~LlG~lPnfY~YavNNPSEa~IAKRRg~Atl--vSy~~  714 (1384)
T TIGR02025       652 LLHFGTHGSLEFMPGKQVGLTGECWPD-RLLGDLPNFYLYAVNNPSEATIAKRRGYATL--VSYLT  714 (1384)
T ss_pred             EEEECCCCCEEECCCCCCCCCCCCCCC-HHCCCCCCCEECCCCCHHHHHHHHHHHHHHH--HHHCC
T ss_conf             887457653222677875888777772-0103675100027888037899988652232--43235


No 248
>TIGR01136 cysKM cysteine synthases; InterPro: IPR005856    This model discriminates cysteine synthases (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblance to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded.    Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid. In bacteria such two forms of the enzyme are known (genes cysK and cysM). CysM differs from CysK in that it can also use thiosulphate instead of sulphide, to produce cysteine thiosulphonate instead of cysteine. ; GO: 0004124 cysteine synthase activity, 0006535 cysteine biosynthetic process from serine.
Probab=53.92  E-value=10  Score=16.95  Aligned_cols=40  Identities=15%  Similarity=0.216  Sum_probs=27.8

Q ss_pred             EEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             98569972999952688999999999999739943998574
Q gi|254780655|r  553 YISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVP  593 (673)
Q Consensus       553 ~~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~  593 (673)
                      +.+.|| =.+=|++|..|.-|++.|++++..|-+..||-+-
T Consensus       263 LA~~EG-Il~GiSSGAavaAAl~~A~~~~~~G~~k~iV~i~  302 (315)
T TIGR01136       263 LAREEG-ILVGISSGAAVAAALQVAKRLENKGPGKVIVAIL  302 (315)
T ss_pred             HHHHCC-EEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf             987468-0662156899999999997322478896699996


No 249
>KOG0029 consensus
Probab=53.71  E-value=14  Score=15.99  Aligned_cols=17  Identities=18%  Similarity=0.104  Sum_probs=8.4

Q ss_pred             CCCEEEECCHHHHHHHH
Q ss_conf             22112112012457777
Q gi|254780655|r  497 DLLVLRPADSIETLECW  513 (673)
Q Consensus       497 nl~v~~P~d~~E~~~~~  513 (673)
                      +...|.|..+.+...++
T Consensus       275 ~~i~F~P~Lp~~k~~aI  291 (501)
T KOG0029         275 GLIEFSPPLPRWKQEAI  291 (501)
T ss_pred             CCEEECCCCCHHHHHHH
T ss_conf             86555899957899999


No 250
>pfam07992 Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=53.42  E-value=14  Score=15.96  Aligned_cols=11  Identities=18%  Similarity=0.407  Sum_probs=5.7

Q ss_pred             CCEEEEECCHH
Q ss_conf             72999952688
Q gi|254780655|r  559 AQVTIFSSGSE  569 (673)
Q Consensus       559 ~dv~iia~G~~  569 (673)
                      .|..+++.|..
T Consensus       224 ~d~~~~~~g~~  234 (277)
T pfam07992       224 ADLVAIGRGPN  234 (277)
T ss_pred             EEEEEEEEEEC
T ss_conf             89999997415


No 251
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=53.42  E-value=14  Score=15.96  Aligned_cols=20  Identities=15%  Similarity=0.228  Sum_probs=11.1

Q ss_pred             HHCCCCHHHHHHHHHHHHCC
Q ss_conf             98099989999999998489
Q gi|254780655|r  654 QHFGINAIAIVDMVERKLSV  673 (673)
Q Consensus       654 ~~~Gld~~~I~~~i~~~L~~  673 (673)
                      ..-.++++.+.++|+++|.|
T Consensus       303 ~~~~~~~~~v~~~~~~~~~~  322 (322)
T PRK10964        303 SMANLSAETVFQKLETLISL  322 (322)
T ss_pred             CCCCCCHHHHHHHHHHHHCC
T ss_conf             70219999999999997459


No 252
>PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed
Probab=52.92  E-value=15  Score=15.91  Aligned_cols=18  Identities=17%  Similarity=0.274  Sum_probs=12.1

Q ss_pred             CHHHHHHHCCCCCCCCCC
Q ss_conf             179988641444444444
Q gi|254780655|r  213 DQYARFRASGWNTLSVNG  230 (673)
Q Consensus       213 ~~~~~~~a~Gw~~~~vdG  230 (673)
                      .+..-+++.||+|.++.|
T Consensus       205 ~Vrr~L~~~GF~v~k~~G  222 (660)
T PRK01747        205 FVRRGLQEAGFTVKKVKG  222 (660)
T ss_pred             HHHHHHHHCCCEEEECCC
T ss_conf             999999978966986677


No 253
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=52.77  E-value=15  Score=15.89  Aligned_cols=84  Identities=21%  Similarity=0.348  Sum_probs=41.4

Q ss_pred             CCEEEEECC-HHHHHHHHHHHHHHHCCCCEE-EEECCC--CCHHCCCCHHHHHHHCCCCCEEEE--ECCCCHHHHHHHHC
Q ss_conf             729999526-889999999999997399439-985746--581000868899964367977999--72860278999845
Q gi|254780655|r  559 AQVTIFSSG-SELKIAVEACEILSSRNISTR-VVSVPC--FELFFEQSDSYRAQIIGSSPIKIA--IEAGLRQGWDAFIG  632 (673)
Q Consensus       559 ~dv~iia~G-~~v~~al~aa~~L~~~Gi~~~-Vi~~~s--~k~ld~~~~~~~~~il~~~~~~vt--iE~g~~~g~~~~~~  632 (673)
                      ..+-+++.| +-++.|.||+..++.-|+++. ++|+=-  +.++-.  .-++..+-..+..+|.  .|+.+++-++.++.
T Consensus       118 g~vgvlsAGTSDlPvAeEa~~tae~lG~ev~~~~DvGVAGiHRLl~--~l~r~~~~~~~~lIVvAGMEGaLPsvvagLvD  195 (254)
T COG1691         118 GKVGVLSAGTSDLPVAEEAAVTAEELGVEVQKVYDVGVAGIHRLLS--ALKRLKIEDADVLIVVAGMEGALPSVVAGLVD  195 (254)
T ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCHHHHHHH--HHHHHHHHCCCEEEEECCCCCCHHHHHHHCCC
T ss_conf             4699994578776268899999998295678999612302776515--88988750798699983666630788875137


Q ss_pred             CCCCEEEEC---CCCCC
Q ss_conf             798189835---77676
Q gi|254780655|r  633 SDGSFIGMQ---GFGAS  646 (673)
Q Consensus       633 ~~~~~igid---~Fg~s  646 (673)
                      -  -+||++   .||..
T Consensus       196 ~--PVIavPTsVGYG~g  210 (254)
T COG1691         196 V--PVIAVPTSVGYGAG  210 (254)
T ss_pred             C--CEEECCCCCCCCCC
T ss_conf             8--76724556433768


No 254
>TIGR01703 hybrid_clust hydroxylamine reductase; InterPro: IPR010048   Hybrid cluster proteins (HCP, or Prismane) have been identified in bacteria, archaea and eukaryotic protozoa. No specific function has yet been assigned to these proteins, but it may involve oxidoreductase enzymatic activity. These proteins contain one 4Fe-4S cluster, and one hybrid 4Fe-2O-2S cluster, the latter being similar to the Ni-Fe-S cluster found in carbon monoxide dehydrogenase enzymes (IPR010047 from INTERPRO) , .    This subfamily is heterogeneous with respect to the presence or absence of a region of about 100 amino acids not far from the N terminus of the protein. Members have been described as monomeric. ; GO: 0016661 oxidoreductase activity acting on other nitrogenous compounds as donors, 0051536 iron-sulfur cluster binding, 0006118 electron transport, 0005737 cytoplasm.
Probab=52.76  E-value=8.8  Score=17.47  Aligned_cols=40  Identities=20%  Similarity=0.282  Sum_probs=27.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHH----CCCCHHHHHCCCCCCCCCC
Q ss_conf             444444406788888887511----0221022201334555700
Q gi|254780655|r  225 TLSVNGHDHHAITSTLRKAQL----SDKPTMIACETVIGFGSPN  264 (673)
Q Consensus       225 ~~~vdG~d~~~i~~a~~~ak~----~~kP~~I~~~T~kG~G~~~  264 (673)
                      .|-|.|||+.+|..-|++-+.    ++=-+.-|-.....+|||.
T Consensus       248 aILvsGHDL~DL~~LL~QT~gmGle~GinVYTHgEMLPAhgYP~  291 (567)
T TIGR01703       248 AILVSGHDLKDLEELLEQTEGMGLETGINVYTHGEMLPAHGYPL  291 (567)
T ss_pred             EEEEECCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHCCCH
T ss_conf             46875688899999999874156445754354653340113861


No 255
>PRK07190 hypothetical protein; Provisional
Probab=51.56  E-value=15  Score=15.76  Aligned_cols=18  Identities=17%  Similarity=0.084  Sum_probs=10.3

Q ss_pred             CHHHCCCCCCCHHHHHHH
Q ss_conf             001003257620023567
Q gi|254780655|r  410 FSGRYLHYGVREHAMAAA  427 (673)
Q Consensus       410 ~p~r~i~~GIaE~~~~~~  427 (673)
                      +.++=.+.||+....-+.
T Consensus       290 ~GGqGmNtGiqDA~NLaW  307 (480)
T PRK07190        290 NGGQGLNTGLADAFNLMW  307 (480)
T ss_pred             CCCCCCCCHHHHHHHHHH
T ss_conf             656620111677888999


No 256
>CHL00194 ycf39 Ycf39; Provisional
Probab=50.82  E-value=16  Score=15.68  Aligned_cols=83  Identities=18%  Similarity=0.213  Sum_probs=40.2

Q ss_pred             CCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCHHCCCCHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCEEEECCCC
Q ss_conf             268899999999999973-9943998574658100086889996436797799972860278999845798189835776
Q gi|254780655|r  566 SGSELKIAVEACEILSSR-NISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIEAGLRQGWDAFIGSDGSFIGMQGFG  644 (673)
Q Consensus       566 ~G~~v~~al~aa~~L~~~-Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE~g~~~g~~~~~~~~~~~igid~Fg  644 (673)
                      +|+..-..-|.++.+++. |.+++++.+|-.   --   .....++....-...|  .=...|.+.++.. .       .
T Consensus       203 ~GP~a~T~~EIa~l~~~~~Gk~~~i~~vP~~---~~---~~~~~~~~~f~~~~~i--~~rl~f~ev~~~~-~-------~  266 (319)
T CHL00194        203 VGPKSWNSSEIISLCEQLSGQKAKVTRIPLF---LL---KLLRRITGFFEWTWNI--SDRLAFAEVLSEG-N-------N  266 (319)
T ss_pred             ECCCCCCHHHHHHHHHHHHCCCCCEEECCHH---HH---HHHHHHHHHHHCCHHH--HHHHHHHHHHCCC-C-------C
T ss_conf             4986389999999999985999877868989---99---9999999872334259--9999999996559-8-------6


Q ss_pred             CCCCHHHHHHHCCCCHHHHH
Q ss_conf             76888899998099989999
Q gi|254780655|r  645 ASGSCDLLYQHFGINAIAIV  664 (673)
Q Consensus       645 ~sg~~~el~~~~Gld~~~I~  664 (673)
                      .+.+.++.|+.+|+|+..+.
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~  286 (319)
T CHL00194        267 FSASMADVYKIFKIDSNEIT  286 (319)
T ss_pred             CCCCHHHHHHHHCCCCCCCC
T ss_conf             57888999877188922222


No 257
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=50.63  E-value=16  Score=15.66  Aligned_cols=10  Identities=20%  Similarity=0.159  Sum_probs=4.0

Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999999
Q gi|254780655|r  572 IAVEACEILS  581 (673)
Q Consensus       572 ~al~aa~~L~  581 (673)
                      -|..-++.|.
T Consensus       319 Da~~La~~L~  328 (413)
T PRK07364        319 DAAALAQVLL  328 (413)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999999


No 258
>TIGR00461 gcvP glycine dehydrogenase; InterPro: IPR003437   This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T . The reaction catalysed by this protein is:    Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0006544 glycine metabolic process, 0005961 glycine dehydrogenase complex (decarboxylating).
Probab=50.28  E-value=10  Score=17.07  Aligned_cols=23  Identities=17%  Similarity=0.249  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             99999999997399439985746
Q gi|254780655|r  572 IAVEACEILSSRNISTRVVSVPC  594 (673)
Q Consensus       572 ~al~aa~~L~~~Gi~~~Vi~~~s  594 (673)
                      +++++|++|-+.|+-+=-++-|-
T Consensus       839 e~~DvAKRL~DyGFHAPT~sfPV  861 (965)
T TIGR00461       839 EALDVAKRLIDYGFHAPTLSFPV  861 (965)
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             54456766411577653323367


No 259
>PRK08244 hypothetical protein; Provisional
Probab=50.21  E-value=16  Score=15.61  Aligned_cols=18  Identities=17%  Similarity=0.204  Sum_probs=10.0

Q ss_pred             CHHHCCCCCCCHHHHHHH
Q ss_conf             001003257620023567
Q gi|254780655|r  410 FSGRYLHYGVREHAMAAA  427 (673)
Q Consensus       410 ~p~r~i~~GIaE~~~~~~  427 (673)
                      +.++=.+.||+-.+.-+.
T Consensus       287 ~gGqGmNtGi~DA~NLaW  304 (494)
T PRK08244        287 AGGQGLNVGLQDAMNLGW  304 (494)
T ss_pred             CCCCCCCCCHHHHHHHHH
T ss_conf             766651343032454899


No 260
>pfam03853 YjeF_N YjeF-related protein N-terminus.
Probab=50.01  E-value=16  Score=15.59  Aligned_cols=53  Identities=23%  Similarity=0.284  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             999999999853426887678459998436211434455788765220223306999
Q gi|254780655|r  139 AVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLW  195 (673)
Q Consensus       139 a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~  195 (673)
                      -+|.+.++ .+..++...  ..+|+++||=| =++|..+-+..+....+.+-.++++
T Consensus        11 ~Ag~~~a~-~i~~~~~~~--~~~v~il~G~G-NNGGDGlv~Ar~L~~~g~~V~v~~~   63 (170)
T pfam03853        11 NAGRAVAR-VIRKLLSPA--GKRVLVLCGPG-NNGGDGLAAARHLAQRGYKVTVLLL   63 (170)
T ss_pred             HHHHHHHH-HHHHHCCCC--CCEEEEEECCC-CCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             99999999-999861877--88699998799-8728899999999987990799996


No 261
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=49.96  E-value=16  Score=15.59  Aligned_cols=18  Identities=33%  Similarity=0.510  Sum_probs=10.4

Q ss_pred             CHHHCCCCCCCHHHHHHH
Q ss_conf             001003257620023567
Q gi|254780655|r  410 FSGRYLHYGVREHAMAAA  427 (673)
Q Consensus       410 ~p~r~i~~GIaE~~~~~~  427 (673)
                      +.++=.+.||.-...-+.
T Consensus       303 ~gGqGmNtGi~DA~NLaW  320 (554)
T PRK06183        303 FQGQGMNSGIRDAANLAW  320 (554)
T ss_pred             CCCCCCCCCHHHHHHHHH
T ss_conf             645655563777999999


No 262
>PRK07608 hypothetical protein; Provisional
Probab=49.64  E-value=16  Score=15.55  Aligned_cols=15  Identities=13%  Similarity=0.426  Sum_probs=6.4

Q ss_pred             CHHHHHHHHHHHHHH
Q ss_conf             688999999999999
Q gi|254780655|r  567 GSELKIAVEACEILS  581 (673)
Q Consensus       567 G~~v~~al~aa~~L~  581 (673)
                      |..++.+++=|..|.
T Consensus       298 GQG~N~gi~Da~~La  312 (389)
T PRK07608        298 GQGMNLGLRDVAALA  312 (389)
T ss_pred             CCCHHHHHHHHHHHH
T ss_conf             333868899999999


No 263
>TIGR00292 TIGR00292 thiazole biosynthesis enzyme; InterPro: IPR002922 This family includes P32318 from SWISSPROT a putative thiamine biosynthetic enzyme . This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.; GO: 0009228 thiamin biosynthetic process.
Probab=48.58  E-value=17  Score=15.44  Aligned_cols=21  Identities=29%  Similarity=0.349  Sum_probs=10.4

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             99873068886314799999999
Q gi|254780655|r  121 SCAGIEATTGPLGQGIANAVGMA  143 (673)
Q Consensus       121 ~~~~v~~~tG~lG~gis~a~G~A  143 (673)
                      +++=+-...||+  ||+.|--+|
T Consensus        21 e~DViiVGAGpS--GLtAAyylA   41 (283)
T TIGR00292        21 ESDVIIVGAGPS--GLTAAYYLA   41 (283)
T ss_pred             HCCEEEECCCCC--HHHHHHHHH
T ss_conf             106679878974--668999998


No 264
>PRK05318 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=48.17  E-value=17  Score=15.40  Aligned_cols=55  Identities=25%  Similarity=0.349  Sum_probs=34.5

Q ss_pred             CCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-HHHH
Q ss_conf             778988788779985652018999999970768899889864000388798898888998730688863147999-9999
Q gi|254780655|r   64 PQCPYWPNRDRFVLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIAN-AVGM  142 (673)
Q Consensus        64 ~~~p~~~~rDr~v~s~GH~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~-a~G~  142 (673)
                      -.+|...+|||+|+|.                         .||++..+|+-||- ...+++.   --|-|++=+ .+|-
T Consensus        21 ~R~~f~rD~dRIi~S~-------------------------aFRRL~~KTQVf~~-~~~D~~r---tRLTHSlEVaqi~R   71 (442)
T PRK05318         21 HRSPYQRDRARILHSA-------------------------AFRRLQAKTQVLGV-GENDFYR---TRLTHSLEVAQIGT   71 (442)
T ss_pred             CCCCHHHCCCHHHCCH-------------------------HHHCCCCCCEEEEC-CCCCCCC---CCHHHHHHHHHHHH
T ss_conf             9980320423775578-------------------------77614568725317-9998674---82269999999999


Q ss_pred             HHHHH
Q ss_conf             99999
Q gi|254780655|r  143 AIAER  147 (673)
Q Consensus       143 A~a~k  147 (673)
                      .+|..
T Consensus        72 si~~~   76 (442)
T PRK05318         72 GIVAQ   76 (442)
T ss_pred             HHHHH
T ss_conf             99999


No 265
>PRK06834 hypothetical protein; Provisional
Probab=48.16  E-value=17  Score=15.40  Aligned_cols=16  Identities=25%  Similarity=0.385  Sum_probs=8.3

Q ss_pred             HHHCCCCCCCHHHHHH
Q ss_conf             0100325762002356
Q gi|254780655|r  411 SGRYLHYGVREHAMAA  426 (673)
Q Consensus       411 p~r~i~~GIaE~~~~~  426 (673)
                      .++=.+.||+-...-+
T Consensus       281 gGqGmNtGi~DA~NLa  296 (488)
T PRK06834        281 GGQGLNTGVQDAVNLG  296 (488)
T ss_pred             CCCCCCCHHHHHHHHH
T ss_conf             4652112377888899


No 266
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=48.05  E-value=17  Score=15.39  Aligned_cols=11  Identities=18%  Similarity=0.338  Sum_probs=4.1

Q ss_pred             HHHHHCCCCHH
Q ss_conf             99998099989
Q gi|254780655|r  651 LLYQHFGINAI  661 (673)
Q Consensus       651 el~~~~Gld~~  661 (673)
                      ...+..||..-
T Consensus       364 ~~~R~~gl~~~  374 (391)
T PRK08020        364 RFARNLGLMAA  374 (391)
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999998


No 267
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=48.01  E-value=17  Score=15.38  Aligned_cols=16  Identities=25%  Similarity=0.345  Sum_probs=6.2

Q ss_pred             EEEECCCCCCCHHHHH
Q ss_conf             9984362114344557
Q gi|254780655|r  163 YVLVGDGCLMEGISQE  178 (673)
Q Consensus       163 ~~iiGDG~l~eG~~~E  178 (673)
                      ++|||-|-+---.+|+
T Consensus         3 v~VIGaGi~Gls~A~~   18 (365)
T TIGR03364         3 LIIVGAGILGLAHAYA   18 (365)
T ss_pred             EEEECCHHHHHHHHHH
T ss_conf             9999932999999999


No 268
>pfam04430 DUF498 Protein of unknown function (DUF498/DUF598). This is a large family of uncharacterized proteins found in all domains of life. The structure shows a novel fold with three beta sheets. A dimeric form is found in the crystal structure. It was suggested that the cleft in between the two monomers might bing nucleic acid.
Probab=47.90  E-value=13  Score=16.37  Aligned_cols=37  Identities=27%  Similarity=0.445  Sum_probs=27.2

Q ss_pred             CCCCEEEEECCHHHH-HHHHHHHHHHHCCCCEEEEECC
Q ss_conf             997299995268899-9999999999739943998574
Q gi|254780655|r  557 PNAQVTIFSSGSELK-IAVEACEILSSRNISTRVVSVP  593 (673)
Q Consensus       557 ~~~dv~iia~G~~v~-~al~aa~~L~~~Gi~~~Vi~~~  593 (673)
                      ..+|+.|+++|.... .--+..+.|+++||.+.+-+.+
T Consensus        52 ~~peiliiGtG~~~~~l~~~~~~~l~~~gI~vE~m~T~   89 (110)
T pfam04430        52 PKPEVLIIGTGARLRFLPPELREALRKLGIGVEVMDTG   89 (110)
T ss_pred             CCCCEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECHH
T ss_conf             99878999559866789999999999759907997759


No 269
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=47.31  E-value=18  Score=15.31  Aligned_cols=28  Identities=0%  Similarity=-0.067  Sum_probs=16.1

Q ss_pred             CCCCEEEEECCHHHHHHHHHHHHHHHCCCC
Q ss_conf             997299995268899999999999973994
Q gi|254780655|r  557 PNAQVTIFSSGSELKIAVEACEILSSRNIS  586 (673)
Q Consensus       557 ~~~dv~iia~G~~v~~al~aa~~L~~~Gi~  586 (673)
                      ++.=+..++.|.  ...+.++++|-+.|..
T Consensus       357 ~~~lv~~~~~n~--~~~~~~~r~li~~~~~  384 (400)
T PRK09754        357 NGVLIGAVTLNQ--GREIRPIRKWIQSGKT  384 (400)
T ss_pred             CCEEEEEEEECC--HHHHHHHHHHHHCCCC
T ss_conf             998999998688--3899999999978878


No 270
>KOG3107 consensus
Probab=47.10  E-value=18  Score=15.29  Aligned_cols=19  Identities=11%  Similarity=0.048  Sum_probs=10.5

Q ss_pred             CCCCEEEEECCHHHHHHHH
Q ss_conf             9972999952688999999
Q gi|254780655|r  557 PNAQVTIFSSGSELKIAVE  575 (673)
Q Consensus       557 ~~~dv~iia~G~~v~~al~  575 (673)
                      =|.++..|..|..+.++..
T Consensus       421 Fg~K~~yvvIgdG~eee~a  439 (468)
T KOG3107         421 FGRKVVYVVIGDGVEEEQA  439 (468)
T ss_pred             HCCCEEEEEECCCHHHHHH
T ss_conf             6784599996686787788


No 271
>KOG1257 consensus
Probab=46.89  E-value=18  Score=15.26  Aligned_cols=38  Identities=16%  Similarity=0.223  Sum_probs=18.6

Q ss_pred             CCCCEEEECCHHHHHHHH-HHHHCCCCCCEEEEECCCCCC
Q ss_conf             122112112012457777-652025678349995244443
Q gi|254780655|r  496 PDLLVLRPADSIETLECW-QVALKEKNRPSVLSLSRQNLP  534 (673)
Q Consensus       496 Pnl~v~~P~d~~E~~~~~-~~al~~~~gP~~ir~~R~~~p  534 (673)
                      +.-.||+=|++....+|. +.|.+..+|- +|.-+-++.|
T Consensus       416 erPiIFalSNPT~~aECtae~ay~~t~Gr-~ifaSGSPF~  454 (582)
T KOG1257         416 ERPIIFALSNPTSKAECTAEQAYKWTKGR-AIFASGSPFP  454 (582)
T ss_pred             CCCEEEECCCCCCCCCCCHHHHHHHCCCC-EEEECCCCCC
T ss_conf             98658866898622436899985133885-8996189999


No 272
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD; InterPro: IPR014104   Members of this family are encoded by slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. (strain PCC 6803), and close homologues (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyses the first step that is committed to myxoxanthophyll..
Probab=46.74  E-value=18  Score=15.25  Aligned_cols=32  Identities=19%  Similarity=0.386  Sum_probs=19.0

Q ss_pred             CEEEEECCCCHHHHHHHHCCC-CCEEEE----CCCCC
Q ss_conf             779997286027899984579-818983----57767
Q gi|254780655|r  614 PIKIAIEAGLRQGWDAFIGSD-GSFIGM----QGFGA  645 (673)
Q Consensus       614 ~~~vtiE~g~~~g~~~~~~~~-~~~igi----d~Fg~  645 (673)
                      ...+=+|.+.+-++++|.+.. |.+=|+    +.||.
T Consensus       420 ~~~~H~ElATPrtF~rwT~Rp~GiVGGlGQ~p~~FGP  456 (499)
T TIGR02733       420 ENWVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGP  456 (499)
T ss_pred             CCCCEEECCCCCCCHHCCCCCCCEECCCCCCCCCCCC
T ss_conf             3442234167886000378998204354466676667


No 273
>TIGR01060 eno phosphopyruvate hydratase; InterPro: IPR000941   Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate , . In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer . The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown  to be evolutionary related to enolase.   Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex.
Probab=45.33  E-value=19  Score=15.10  Aligned_cols=22  Identities=14%  Similarity=0.021  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9975433356688764246763
Q gi|254780655|r  305 WRLAGLRSSQTRADWQERLSSM  326 (673)
Q Consensus       305 ~~~~~~~~~~~~~~w~~~~~~~  326 (673)
                      |+....-+.+.+|..++.+++.
T Consensus       172 ~~EAlR~gAEVfH~LK~~L~~~  193 (430)
T TIGR01060       172 FREALRMGAEVFHALKKLLKEK  193 (430)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             6899987899999999998761


No 274
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=45.19  E-value=19  Score=15.08  Aligned_cols=17  Identities=35%  Similarity=0.376  Sum_probs=8.1

Q ss_pred             CHHHHHHHHHHHHHHHC
Q ss_conf             68899999999999973
Q gi|254780655|r  567 GSELKIAVEACEILSSR  583 (673)
Q Consensus       567 G~~v~~al~aa~~L~~~  583 (673)
                      |.-+..+--..+.|++.
T Consensus       341 G~G~~~ap~~G~~lA~l  357 (377)
T PRK11259        341 GHGFKFASVLGEILADL  357 (377)
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             89999999999999999


No 275
>pfam03698 UPF0180 Uncharacterized protein family (UPF0180). The members of this family are small uncharacterized proteins.
Probab=45.18  E-value=19  Score=15.08  Aligned_cols=68  Identities=21%  Similarity=0.283  Sum_probs=40.9

Q ss_pred             HHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCEEEECCCCCCCCHHHHHH
Q ss_conf             99999997399439985746581000868899964367977999728602789998457981898357767688889999
Q gi|254780655|r  575 EACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIEAGLRQGWDAFIGSDGSFIGMQGFGASGSCDLLYQ  654 (673)
Q Consensus       575 ~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE~g~~~g~~~~~~~~~~~igid~Fg~sg~~~el~~  654 (673)
                      ...+.|+++|++  |+++.+....           -.....+||             |.+.-.+|+.+-...+|   +.+
T Consensus        12 ~v~e~L~~~Gy~--Vv~l~~~~~~-----------~~~da~Vit-------------G~d~N~mGi~d~~t~~p---VI~   62 (80)
T pfam03698        12 NIEEALKEKGYE--VVRLKNEQDA-----------QGCDACVVT-------------GLDSNMMGIEDTVTKAP---VID   62 (80)
T ss_pred             HHHHHHHHCCCE--EEECCCCCCC-----------CCCCEEEEE-------------CCCCCCCCCCCCCCCCC---EEE
T ss_conf             999999977987--8867870325-----------665889995-------------89865214413345687---486


Q ss_pred             HCCCCHHHHHHHHHHHH
Q ss_conf             80999899999999984
Q gi|254780655|r  655 HFGINAIAIVDMVERKL  671 (673)
Q Consensus       655 ~~Gld~~~I~~~i~~~L  671 (673)
                      .-|+|++.|++.+++.|
T Consensus        63 A~G~TaeEI~~~ve~rl   79 (80)
T pfam03698        63 ASGLTAEEICQEVEERL   79 (80)
T ss_pred             CCCCCHHHHHHHHHHHC
T ss_conf             68999999999999860


No 276
>pfam11843 DUF3363 Protein of unknown function (DUF3363). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 323 to 658 amino acids in length.
Probab=44.81  E-value=19  Score=15.05  Aligned_cols=100  Identities=21%  Similarity=0.291  Sum_probs=54.2

Q ss_pred             CCCCCHHH-HCCCCCHHHHHCC--CCEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             33331010-0022210111012--21121120124577776520256783499952444433456655322123473799
Q gi|254780655|r  477 GEDGPTHQ-PVEHLAALRAIPD--LLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDY  553 (673)
Q Consensus       477 G~DGpTHq-~iedia~lr~iPn--l~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~  553 (673)
                      |-||-||| .+.+...+-..|-  +.=++|.+..+....+..  .. .+.+.+. .|..+|.      ....-..|+-++
T Consensus        96 GvDGr~hhv~l~~~~~~~~~~~G~IVevr~~~~~~r~~~yDa--~~-~~~v~l~-~~S~l~l------e~Qv~a~GATWL  165 (312)
T pfam11843        96 GVDGRTHHVRLPDGEATGDAPPGGIVEIRSFAELERAAAYDA--RR-RRRVALA-VRSDLSL------EAQVTARGATWL  165 (312)
T ss_pred             CCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCHHHHHH--CC-CCCEEEE-EECCCCH------HHHCCCCCCCHH
T ss_conf             578978888668853345689987899787565430202222--14-7841899-8379998------996278886322


Q ss_pred             EE----CCCCCEEEEECCHHHHHHHHH-HHHHHHCCCC
Q ss_conf             85----699729999526889999999-9999973994
Q gi|254780655|r  554 IS----TPNAQVTIFSSGSELKIAVEA-CEILSSRNIS  586 (673)
Q Consensus       554 ~~----~~~~dv~iia~G~~v~~al~a-a~~L~~~Gi~  586 (673)
                      -+    .+..++.--++|.+|..|++. ++.|.++|.-
T Consensus       166 Drqli~~~~~~l~~~GFG~Evr~Am~~R~~~L~~qGla  203 (312)
T pfam11843       166 DRQLVARDPSDLADGGFGAEVREALDRRREHLIEEGLA  203 (312)
T ss_pred             HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCH
T ss_conf             14453168532355885799999999999999975750


No 277
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III; InterPro: IPR004655   Beta-ketoacyl-acyl carrier protein synthase III (FabH), in general, initiates elongation in type II fatty acid synthase systems found in bacteria and plants. It is responsible for producing the multitude of fatty acid structures found in bacterial membranes . The two members of this subfamily from Bacillus subtilis differ from each other, and from FabH from Escherichia coli, in acyl group specificity. Active site residues include Cys112, His244 and Asn274 of Escherichia coli FabH. Cys-112 is the site of acyl group attachment. ; GO: 0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity, 0006633 fatty acid biosynthetic process.
Probab=44.05  E-value=20  Score=14.96  Aligned_cols=12  Identities=8%  Similarity=0.182  Sum_probs=8.1

Q ss_pred             CCCCCEEEEECC
Q ss_conf             367977999728
Q gi|254780655|r  610 IGSSPIKIAIEA  621 (673)
Q Consensus       610 l~~~~~~vtiE~  621 (673)
                      +..++.++|++-
T Consensus       271 ~~~~~Vv~Tv~k  282 (329)
T TIGR00747       271 LKESKVVKTVHK  282 (329)
T ss_pred             CCCCCEEEEEEC
T ss_conf             980316863200


No 278
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462    The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=43.89  E-value=20  Score=14.95  Aligned_cols=48  Identities=25%  Similarity=0.419  Sum_probs=26.2

Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf             0038879889888899873068886314799999999999985342688767845999843621143
Q gi|254780655|r  107 RTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLME  173 (673)
Q Consensus       107 r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~e  173 (673)
                      |...-+-+|+| .+      + +||.|+|=.. +-|++|.+     ..++     |+.+.||-+|+.
T Consensus        13 R~l~yL~~G~P-vH------l-~GPaG~GKT~-LA~hvA~~-----r~RP-----V~l~~Gd~eL~~   60 (265)
T TIGR02640        13 RALRYLKSGYP-VH------L-RGPAGTGKTT-LAMHVARK-----RDRP-----VVLINGDAELTT   60 (265)
T ss_pred             HHHHHHCCCCC-EE------E-ECCCCCCHHH-HHHHHHHH-----CCCC-----EEEEECCCCCCC
T ss_conf             87663227886-67------4-4788855689-99999973-----6896-----899865823265


No 279
>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G. This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle.
Probab=43.82  E-value=20  Score=14.94  Aligned_cols=64  Identities=11%  Similarity=0.147  Sum_probs=34.8

Q ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC-----------CCCCCCCCHHHHHHHCCCCCCC
Q ss_conf             4599984362114344557887652202233069996276322322-----------3556782179988641444444
Q gi|254780655|r  160 HYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGP-----------ISLADSTDQYARFRASGWNTLS  227 (673)
Q Consensus       160 ~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~-----------~~~~~~~~~~~~~~a~Gw~~~~  227 (673)
                      +++.++||-+|-.  .+--...+|++|+++.+-+....  ..++..           .......-+.+.++.|||+.+.
T Consensus        67 ~~v~a~iGP~Cs~--~~~~va~la~~wniP~iSy~~~s--~~lsdk~~yptf~Rt~p~~~~~~~a~~~ll~~F~W~~va  141 (391)
T cd06372          67 EHISALFGPACPE--AAEVTGLLASQWNIPMFGFVGQT--AKLDNRFLYDTYVKLVPPKQKIGEVLQKSLQHFGWKHIG  141 (391)
T ss_pred             CCCEEEECCCCCH--HHHHHHHHHHHCCCCCCCCCCCC--CCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf             4962999999806--89999999875275410013356--133677656651321587366799999999961985999


No 280
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=43.67  E-value=20  Score=14.93  Aligned_cols=27  Identities=15%  Similarity=0.233  Sum_probs=14.6

Q ss_pred             CCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             972999952688999999999999739943998574
Q gi|254780655|r  558 NAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVP  593 (673)
Q Consensus       558 ~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~  593 (673)
                      .++++-++.-.         ++++++|+++.+...+
T Consensus       335 ~PeiA~VGlte---------~~a~~~G~~~~~~~~~  361 (441)
T PRK08010        335 TPPLSRVGMTE---------EQARESGADIQVVTLP  361 (441)
T ss_pred             CCCEEEEECCH---------HHHHHCCCCEEEEEEE
T ss_conf             76327886899---------9998659988999998


No 281
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase; InterPro: IPR006322    These sequences represent one of two closely related subfamilies of glutathione reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione reductases of animals, yeast, and a number of animal-resident bacteria. ; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=43.41  E-value=20  Score=14.90  Aligned_cols=12  Identities=33%  Similarity=0.365  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999997
Q gi|254780655|r  571 KIAVEACEILSS  582 (673)
Q Consensus       571 ~~al~aa~~L~~  582 (673)
                      +-|++|=++|++
T Consensus       335 PVAIaAGR~LS~  346 (475)
T TIGR01421       335 PVAIAAGRKLSE  346 (475)
T ss_pred             HHHHHHHHHHHH
T ss_conf             378773036787


No 282
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate    transport and metabolism]
Probab=43.38  E-value=20  Score=14.89  Aligned_cols=11  Identities=9%  Similarity=0.317  Sum_probs=4.5

Q ss_pred             EEEEECCHHHH
Q ss_conf             99995268899
Q gi|254780655|r  561 VTIFSSGSELK  571 (673)
Q Consensus       561 v~iia~G~~v~  571 (673)
                      +.+=+||....
T Consensus       169 ~VvDaTGHda~  179 (262)
T COG1635         169 AVVDATGHDAE  179 (262)
T ss_pred             EEEECCCCCHH
T ss_conf             99967888428


No 283
>PRK06116 glutathione reductase; Validated
Probab=43.13  E-value=20  Score=14.87  Aligned_cols=34  Identities=15%  Similarity=0.278  Sum_probs=16.4

Q ss_pred             CCCEEEECCCCCCCCH----HHHHHHCCCCHHHHHHHH
Q ss_conf             9818983577676888----899998099989999999
Q gi|254780655|r  634 DGSFIGMQGFGASGSC----DLLYQHFGINAIAIVDMV  667 (673)
Q Consensus       634 ~~~~igid~Fg~sg~~----~el~~~~Gld~~~I~~~i  667 (673)
                      .++++|..=+|.+++-    -.+.=+.|++.+.+.+.|
T Consensus       399 t~~ILGa~iiG~~A~elI~~~a~Ai~~~~t~~dl~~~i  436 (450)
T PRK06116        399 EEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTV  436 (450)
T ss_pred             CCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCC
T ss_conf             79799999989999999999999998789899992367


No 284
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=42.75  E-value=20  Score=14.83  Aligned_cols=24  Identities=8%  Similarity=0.029  Sum_probs=11.8

Q ss_pred             HHHCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             010032576200235678799872
Q gi|254780655|r  411 SGRYLHYGVREHAMAAAMNGIALH  434 (673)
Q Consensus       411 p~r~i~~GIaE~~~~~~aaGla~~  434 (673)
                      .++=.++||.-...-+.=-++.++
T Consensus       356 gGqGMNtgiqDA~NLgWKLA~Vl~  379 (634)
T PRK08294        356 AGQGMNVSMQDGFNLGWKLAHVLS  379 (634)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             334413422005555657889871


No 285
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=41.72  E-value=21  Score=14.72  Aligned_cols=35  Identities=26%  Similarity=0.452  Sum_probs=21.4

Q ss_pred             CCCCCEEEEECCH--HHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             6997299995268--8999999999999739943998
Q gi|254780655|r  556 TPNAQVTIFSSGS--ELKIAVEACEILSSRNISTRVV  590 (673)
Q Consensus       556 ~~~~dv~iia~G~--~v~~al~aa~~L~~~Gi~~~Vi  590 (673)
                      ..++++.||++|.  .+..--++.+.|+++||.+.+-
T Consensus        56 ~~~~evlviGTG~~g~l~v~p~~~~~l~~~gi~v~~~   92 (117)
T cd05126          56 EEGVEVIVIGTGQSGALKVPPETVEKLEKRGVEVLVL   92 (117)
T ss_pred             HCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEE
T ss_conf             7199999985896865648999999999759818983


No 286
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155   This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase  and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=41.60  E-value=18  Score=15.28  Aligned_cols=36  Identities=28%  Similarity=0.250  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHCCCCCHHHHHCC
Q ss_conf             124541111000013024543333333310100022210111012
Q gi|254780655|r  453 PAIRLASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHLAALRAIPD  497 (673)
Q Consensus       453 ~~ir~~al~~~~v~~v~th~gi~~G~DGpTHq~iedia~lr~iPn  497 (673)
                      +++|.|=..+.+++.++.     +|. |.|=-.   =|++..||.
T Consensus       149 ~Fl~~Ai~~~knIii~GG-----TgS-GKTTf~---kal~~~IP~  184 (328)
T TIGR02788       149 EFLRLAIASRKNIIISGG-----TGS-GKTTFL---KALVKEIPK  184 (328)
T ss_pred             HHHHHHHHCCCEEEEEEC-----CCC-HHHHHH---HHHHHCCCC
T ss_conf             999999873891999906-----897-189999---999732762


No 287
>PRK13557 histidine kinase; Provisional
Probab=41.12  E-value=16  Score=15.65  Aligned_cols=23  Identities=30%  Similarity=0.533  Sum_probs=14.1

Q ss_pred             CEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf             779985652018999999970768899889864
Q gi|254780655|r   73 DRFVLSAGHGSMLYYALLYLLGYQDVTIEDIKN  105 (673)
Q Consensus        73 Dr~v~s~GH~s~~~Y~~~~l~G~~~~~~e~l~~  105 (673)
                      -+|+|-+       -+...++||   +.|++..
T Consensus        51 g~I~~vN-------~af~~~tGY---s~eEviG   73 (538)
T PRK13557         51 NPIVFAN-------RAFLEMTGY---AAEEIIG   73 (538)
T ss_pred             CEEEEEC-------HHHHHHHCC---CHHHHCC
T ss_conf             8799983-------999998795---9999869


No 288
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=40.86  E-value=18  Score=15.30  Aligned_cols=37  Identities=16%  Similarity=0.245  Sum_probs=25.1

Q ss_pred             CCCCEEEEECCHHHH-HHHHHHHHHHHCCCCEEEEECC
Q ss_conf             997299995268899-9999999999739943998574
Q gi|254780655|r  557 PNAQVTIFSSGSELK-IAVEACEILSSRNISTRVVSVP  593 (673)
Q Consensus       557 ~~~dv~iia~G~~v~-~al~aa~~L~~~Gi~~~Vi~~~  593 (673)
                      ..+|+.|+++|.... ..-+..+.|+++||.+.+-+-.
T Consensus        51 ~~peilliGtG~~~~~~~~~~~~~l~~~gI~vE~M~T~   88 (109)
T cd05560          51 LQPEVILLGTGERQRFPPPALLAPLLARGIGVEVMDTQ   88 (109)
T ss_pred             CCCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEECCH
T ss_conf             79968999448865799999999999859905996769


No 289
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=40.74  E-value=22  Score=14.62  Aligned_cols=94  Identities=16%  Similarity=0.310  Sum_probs=54.6

Q ss_pred             CEEEE---ECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCCCCCEEE---EECCCCHH----HHHH
Q ss_conf             29999---52688999999999999739943998574658100086889996436797799---97286027----8999
Q gi|254780655|r  560 QVTIF---SSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKI---AIEAGLRQ----GWDA  629 (673)
Q Consensus       560 dv~ii---a~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~v---tiE~g~~~----g~~~  629 (673)
                      .|.|+   .+|+.-..|-..++-|.+.|+++.++++.+-.+     .+.+..++.....+|   |++.+...    .+..
T Consensus       248 ~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~~~-----~eI~~~i~~a~~~vvGsPT~~~~~~p~i~~~l~~  322 (388)
T COG0426         248 KVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDADP-----SEIVEEILDAKGLVVGSPTINGGAHPPIQTALGY  322 (388)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCH-----HHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHH
T ss_conf             17999842237879999999877611599629999155889-----9999998753779995686468879219999999


Q ss_pred             HH--CCCCCEEEE-CCCCCCCCH----HHHHHHCCC
Q ss_conf             84--579818983-577676888----899998099
Q gi|254780655|r  630 FI--GSDGSFIGM-QGFGASGSC----DLLYQHFGI  658 (673)
Q Consensus       630 ~~--~~~~~~igi-d~Fg~sg~~----~el~~~~Gl  658 (673)
                      ..  ..+.+..++ -.||-+|-.    .+.++..|+
T Consensus       323 v~~~~~~~k~~~vfgS~GW~g~av~~i~~~l~~~g~  358 (388)
T COG0426         323 VLALAPKNKLAGVFGSYGWSGEAVDLIEEKLKDLGF  358 (388)
T ss_pred             HHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCC
T ss_conf             974358785599996478787507899999986596


No 290
>PRK05290 hydroxylamine reductase; Provisional
Probab=40.60  E-value=17  Score=15.40  Aligned_cols=39  Identities=21%  Similarity=0.317  Sum_probs=27.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCC
Q ss_conf             444444067888888875110221022201334555700
Q gi|254780655|r  226 LSVNGHDHHAITSTLRKAQLSDKPTMIACETVIGFGSPN  264 (673)
Q Consensus       226 ~~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T~kG~G~~~  264 (673)
                      |-|.|||+..+...+++.+..+--+.-|......+|+|.
T Consensus       235 ILVSGHDL~DLe~LL~QTeg~GInVYTHgEMLPAH~YP~  273 (540)
T PRK05290        235 ILVSGHDLKDLEELLEQTEGTGINVYTHGEMLPAHGYPE  273 (540)
T ss_pred             EEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
T ss_conf             999698989999999974078857986665442456801


No 291
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor. Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.
Probab=40.60  E-value=22  Score=14.60  Aligned_cols=62  Identities=19%  Similarity=0.208  Sum_probs=31.2

Q ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC----------CCCCCCCCCHHHHHHHCCCC
Q ss_conf             59998436211434455788765220223306999627632232----------23556782179988641444
Q gi|254780655|r  161 YTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDG----------PISLADSTDQYARFRASGWN  224 (673)
Q Consensus       161 ~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~----------~~~~~~~~~~~~~~~a~Gw~  224 (673)
                      ++.+++|-||-.  .+--...+|++|+++-+-.-...-..+-+.          +.......-+.+.++.|||.
T Consensus        73 ~~~~~~GP~C~~--~~~~va~~a~~wniP~iS~g~~s~~~s~k~~~ypT~~Rt~p~~~~~~~~~~~ll~~f~Wt  144 (399)
T cd06384          73 DPDVFFGPGCVY--PTASVARFATHWRLPLITAGAPAFGFSNKTDEYRTTVRTGPSTTKLGEFVNHLHEHFNWT  144 (399)
T ss_pred             CCCEEECCCCHH--HHHHHHHHHHCCCCEEEECCCCCHHHCCCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf             872999999717--889999998516871771166874431554447745762674888999999999976994


No 292
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=40.56  E-value=17  Score=15.39  Aligned_cols=37  Identities=16%  Similarity=0.322  Sum_probs=26.4

Q ss_pred             CCCCEEEEECCHHHHH-HHHHHHHHHHCCCCEEEEECC
Q ss_conf             9972999952688999-999999999739943998574
Q gi|254780655|r  557 PNAQVTIFSSGSELKI-AVEACEILSSRNISTRVVSVP  593 (673)
Q Consensus       557 ~~~dv~iia~G~~v~~-al~aa~~L~~~Gi~~~Vi~~~  593 (673)
                      ..+|+.||++|..... .-+..+.|++.||.+.+.|.+
T Consensus        53 p~peilliGtG~~~~~~~~~~~~~l~~~gI~vE~M~T~   90 (114)
T cd05125          53 PRPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVDTR   90 (114)
T ss_pred             CCCCEEEECCCCCCCCCCHHHHHHHHHCCCEEEEECHH
T ss_conf             99999998669987789999999999759917995839


No 293
>PRK10565 hypothetical protein; Provisional
Probab=40.51  E-value=22  Score=14.59  Aligned_cols=52  Identities=21%  Similarity=0.237  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             999999998534268876784599984362114344557887652202233069996
Q gi|254780655|r  140 VGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWD  196 (673)
Q Consensus       140 ~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d  196 (673)
                      .|.|.++- +..++..   ..+++++||-|- ++|..|-+..+....+.+--++.+.
T Consensus        45 Ag~a~a~~-i~~~~~~---~~~v~VlcG~GN-NGGDG~v~AR~L~~~G~~V~v~~~~   96 (515)
T PRK10565         45 AGEAAFQV-ARSAYPD---ARHWLVLCGHGN-NGGDGYVVARLAKAAGIDVTLLAQE   96 (515)
T ss_pred             HHHHHHHH-HHHHCCC---CCEEEEEECCCC-CHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf             99999999-9986799---997999988985-6999999999999779869999967


No 294
>pfam11823 DUF3343 Protein of unknown function (DUF3343). This family of proteins are functionally uncharacterized. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=40.44  E-value=22  Score=14.58  Aligned_cols=31  Identities=16%  Similarity=0.308  Sum_probs=24.2

Q ss_pred             EEECCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             99526889999999999997399439985746
Q gi|254780655|r  563 IFSSGSELKIAVEACEILSSRNISTRVVSVPC  594 (673)
Q Consensus       563 iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s  594 (673)
                      |+.+- ..+.|+++-+.|+++|+++++|-+|.
T Consensus         5 ii~F~-st~~a~~~e~~lk~~~i~~~liP~Pr   35 (73)
T pfam11823         5 LITFP-STHHALKAEKLLKKAGIKVKLIPTPR   35 (73)
T ss_pred             EEEEC-CHHHHHHHHHHHHHCCCCEEEECCCH
T ss_conf             99988-87999999999988899879957985


No 295
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily.  EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes.  EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains.  This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha).  eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis.  EF-Tu can have no such role in bacteria.  In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene.  This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=40.07  E-value=22  Score=14.55  Aligned_cols=33  Identities=30%  Similarity=0.414  Sum_probs=24.8

Q ss_pred             CCCCC-----CCHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf             36211-----434455788765220223306999627632
Q gi|254780655|r  167 GDGCL-----MEGISQEAISFAGHLGLSKLIVLWDNNGIS  201 (673)
Q Consensus       167 GDG~l-----~eG~~~EAl~~A~~~~l~nli~i~d~N~~s  201 (673)
                      -+|+.     -.|++-|=+.++..++..++||.+  |+|=
T Consensus       111 ~~g~~e~g~~~~~QTreH~~l~~~lGik~iIVav--NKMD  148 (219)
T cd01883         111 RKGEFEAGFEKGGQTREHALLARTLGVKQLIVAV--NKMD  148 (219)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEE--ECCC
T ss_conf             7675103667776599999999984997489999--8753


No 296
>PRK07045 putative monooxygenase; Reviewed
Probab=39.41  E-value=23  Score=14.48  Aligned_cols=16  Identities=25%  Similarity=0.495  Sum_probs=7.6

Q ss_pred             CHHHHHHHHHHHHHHH
Q ss_conf             6889999999999997
Q gi|254780655|r  567 GSELKIAVEACEILSS  582 (673)
Q Consensus       567 G~~v~~al~aa~~L~~  582 (673)
                      |..++.|++=|..|..
T Consensus       302 GQG~N~aieDA~~La~  317 (388)
T PRK07045        302 GQGMNLAIEDAGELGA  317 (388)
T ss_pred             CHHHHHHHHHHHHHHH
T ss_conf             2168789999999999


No 297
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=39.33  E-value=23  Score=14.47  Aligned_cols=52  Identities=23%  Similarity=0.253  Sum_probs=32.6

Q ss_pred             CCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH-HHHH
Q ss_conf             789887887799856520189999999707688998898640003887988988889987306888631479999-9999
Q gi|254780655|r   65 QCPYWPNRDRFVLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANA-VGMA  143 (673)
Q Consensus        65 ~~p~~~~rDr~v~s~GH~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a-~G~A  143 (673)
                      .+|...+|||+|.|.                         -||++.++|+-||- ++.+++.   --|-|+|=+| +|-.
T Consensus        34 Rs~FqrDrdRIihS~-------------------------aFRRLq~KTQVf~~-~~~D~~R---tRLTHSLEVaqi~Rs   84 (428)
T PRK03007         34 RTDFARDRARVLHSA-------------------------ALRRLADKTQVVGP-RDGDTPR---TRLTHSLEVAQIGRG   84 (428)
T ss_pred             CCCHHCCCHHHHCCH-------------------------HHHCCCCCCEEEEC-CCCCCCC---CCHHHHHHHHHHHHH
T ss_conf             883002510665358-------------------------77403578666107-9888660---512689999999999


Q ss_pred             HH
Q ss_conf             99
Q gi|254780655|r  144 IA  145 (673)
Q Consensus       144 ~a  145 (673)
                      +|
T Consensus        85 ia   86 (428)
T PRK03007         85 IA   86 (428)
T ss_pred             HH
T ss_conf             99


No 298
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer.  2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=39.03  E-value=17  Score=15.48  Aligned_cols=37  Identities=16%  Similarity=0.308  Sum_probs=25.5

Q ss_pred             CCCCEEEEECCHHHH-HHHHHHHHHHHCCCCEEEEECC
Q ss_conf             997299995268899-9999999999739943998574
Q gi|254780655|r  557 PNAQVTIFSSGSELK-IAVEACEILSSRNISTRVVSVP  593 (673)
Q Consensus       557 ~~~dv~iia~G~~v~-~al~aa~~L~~~Gi~~~Vi~~~  593 (673)
                      ..+|+.||++|.... .--+..+.|+++||.+.+-+..
T Consensus        51 ~~peilliGtG~~~~~~~~~~~~~l~~~gI~~E~M~T~   88 (109)
T cd00248          51 DRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG   88 (109)
T ss_pred             CCCCEEEECCCCCCCCCCHHHHHHHHHCCCEEEEECHH
T ss_conf             89848998658977789999999999879949996709


No 299
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=39.02  E-value=23  Score=14.43  Aligned_cols=30  Identities=13%  Similarity=0.081  Sum_probs=13.5

Q ss_pred             CCHHHHHHHCCCCCCCCC-----CCCHHHHHHHHH
Q ss_conf             217998864144444444-----440678888888
Q gi|254780655|r  212 TDQYARFRASGWNTLSVN-----GHDHHAITSTLR  241 (673)
Q Consensus       212 ~~~~~~~~a~Gw~~~~vd-----G~d~~~i~~a~~  241 (673)
                      +-..+-.+.+|.++..++     .-|.++|.++++
T Consensus        93 ~R~~~ia~~~g~~v~~l~~~~g~~~~~~~ve~~L~  127 (368)
T PRK13479         93 ARIAKIAEYLGIAHVVLDTGEDEPPDAAAVEAALA  127 (368)
T ss_pred             HHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf             99999999819975998789999889999999997


No 300
>PRK05569 flavodoxin; Provisional
Probab=39.02  E-value=23  Score=14.43  Aligned_cols=31  Identities=10%  Similarity=0.013  Sum_probs=18.1

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             2688999999999999739943998574658
Q gi|254780655|r  566 SGSELKIAVEACEILSSRNISTRVVSVPCFE  596 (673)
Q Consensus       566 ~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k  596 (673)
                      +|++-..|-..++-+++.|++++|.++...+
T Consensus        12 ~GnTe~mA~~IaeG~~~~G~ev~v~~~~~~~   42 (141)
T PRK05569         12 GGNVEVLANTIADGAKEAGAEVTIKHVADAK   42 (141)
T ss_pred             CCHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             6089999999999999769819999842399


No 301
>COG3770 MepA Murein endopeptidase [Cell envelope biogenesis, outer membrane]
Probab=39.02  E-value=22  Score=14.60  Aligned_cols=58  Identities=22%  Similarity=0.347  Sum_probs=37.0

Q ss_pred             HHHCCCCCCCCC-----CC-CHHHHHHHH-HHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             864144444444-----44-067888888-875110221022201334555700047711033437
Q gi|254780655|r  218 FRASGWNTLSVN-----GH-DHHAITSTL-RKAQLSDKPTMIACETVIGFGSPNRAGTNKVHGSAL  276 (673)
Q Consensus       218 ~~a~Gw~~~~vd-----G~-d~~~i~~a~-~~ak~~~kP~~I~~~T~kG~G~~~~e~~~~~HG~~l  276 (673)
                      .++-||.|++.|     || |+-++++-| ++|+..+-|++++..--+=.|.++..|.. +|..-|
T Consensus        58 ~~g~~~QvmR~~rnR~~GHP~mi~~ierls~~a~~~G~p~lLiGDis~P~GG~~ltGHA-SHQ~GL  122 (284)
T COG3770          58 TDGPGYQVMRLSRNRYWGHPDMIAFIERLSHDAKAIGWPTLLIGDISMPRGGRFLTGHA-SHQIGL  122 (284)
T ss_pred             CCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCC-CCCCCC
T ss_conf             88997366763556556883899999998578886589804550245778886666642-000265


No 302
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=38.98  E-value=23  Score=14.43  Aligned_cols=54  Identities=13%  Similarity=0.158  Sum_probs=35.5

Q ss_pred             EEEEEECCCCCCCCCCCC--CCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             069996276322322355--678217998864144444444440678888888751
Q gi|254780655|r  191 LIVLWDNNGISIDGPISL--ADSTDQYARFRASGWNTLSVNGHDHHAITSTLRKAQ  244 (673)
Q Consensus       191 li~i~d~N~~si~~~~~~--~~~~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak  244 (673)
                      +.+|+++..+.-..+..+  ....++...|+.+||.|.....-+..++.+++++..
T Consensus        10 ~alIInn~~F~~~~~R~Gs~~D~~~L~~~f~~LgF~V~~~~nlt~~e~~~~l~~~~   65 (241)
T smart00115       10 LALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVHVKNNLTAEEMLEELKEFA   65 (241)
T ss_pred             EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf             99998353679998799838999999999997899899923899999999999998


No 303
>PRK06370 mercuric reductase; Validated
Probab=38.70  E-value=23  Score=14.40  Aligned_cols=14  Identities=14%  Similarity=0.033  Sum_probs=9.0

Q ss_pred             HHHCCCCEEEEECC
Q ss_conf             99739943998574
Q gi|254780655|r  580 LSSRNISTRVVSVP  593 (673)
Q Consensus       580 L~~~Gi~~~Vi~~~  593 (673)
                      ++++|+++.+...+
T Consensus       363 a~~~g~~~~~~~~~  376 (459)
T PRK06370        363 ARKSGRRVLVGTRP  376 (459)
T ss_pred             HHHCCCCEEEEEEE
T ss_conf             98769987999998


No 304
>PRK07589 ornithine cyclodeaminase; Validated
Probab=38.39  E-value=24  Score=14.37  Aligned_cols=78  Identities=23%  Similarity=0.317  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             14799999999999985342688767845999843621143445578876522022330699962763223223556782
Q gi|254780655|r  133 GQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADST  212 (673)
Q Consensus       133 G~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~  212 (673)
                      =+.+=.|.--|+|.|+|..+      |.++.++||-|.+.+-++ +|  +.....+.. |.++|-|.-.         .+
T Consensus       108 LTalRTaAaSalAak~LAR~------ds~~l~iIGtG~QA~~Q~-~A--~~~vr~i~~-V~v~~r~~~~---------a~  168 (346)
T PRK07589        108 LTALRTAATSALAAKYLARP------DSRTMALIGNGAQSEFQA-LA--FKALLGIEE-IRLYDIDPAA---------TA  168 (346)
T ss_pred             HHHHHHHHHHHHHHHHHCCC------CCCEEEEECCCHHHHHHH-HH--HHHHCCCCE-EEEEECCHHH---------HH
T ss_conf             77889888999999984578------987699974708899999-99--998589868-9998288799---------99


Q ss_pred             CHHHHHHHCCCCCCCCC
Q ss_conf             17998864144444444
Q gi|254780655|r  213 DQYARFRASGWNTLSVN  229 (673)
Q Consensus       213 ~~~~~~~a~Gw~~~~vd  229 (673)
                      ...+++...|+++..++
T Consensus       169 ~~a~~l~~~g~~v~~~~  185 (346)
T PRK07589        169 KLARNLAGPGLRIVRCR  185 (346)
T ss_pred             HHHHHHHHCCCEEEEEC
T ss_conf             99999872698089949


No 305
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=38.10  E-value=24  Score=14.34  Aligned_cols=44  Identities=20%  Similarity=0.221  Sum_probs=27.1

Q ss_pred             CCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             8988788779985652018999999970768899889864000388798898888998730688863147999
Q gi|254780655|r   66 CPYWPNRDRFVLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIAN  138 (673)
Q Consensus        66 ~p~~~~rDr~v~s~GH~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~  138 (673)
                      +|...+|||+|+|.                         .||++..+|+-||-. +.+++   .--|-|++=+
T Consensus        27 ~~f~rD~dRIi~S~-------------------------afRRL~~KTQVf~~~-~~D~~---rtRLTHSlEV   70 (338)
T PRK01286         27 TEFQRDRDRIIHSK-------------------------AFRRLKHKTQVFINH-EGDHY---RTRLTHTLEV   70 (338)
T ss_pred             CCHHHCCHHHHCCH-------------------------HHHCCCCCCEECCCC-CCCCC---CCCHHHHHHH
T ss_conf             81120412776368-------------------------776145677364079-89843---6712599999


No 306
>PRK12310 hydroxylamine reductase; Provisional
Probab=38.05  E-value=20  Score=14.93  Aligned_cols=40  Identities=20%  Similarity=0.337  Sum_probs=27.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCC
Q ss_conf             4444444067888888875110221022201334555700
Q gi|254780655|r  225 TLSVNGHDHHAITSTLRKAQLSDKPTMIACETVIGFGSPN  264 (673)
Q Consensus       225 ~~~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T~kG~G~~~  264 (673)
                      .|-|.|||+..+..-+++.+..+--+.-|......+|+|.
T Consensus       124 ~ILVSGHDL~dL~~LL~QTeg~GInVYTHgEMLPAH~YP~  163 (429)
T PRK12310        124 AILVTGHNLKALEELLKQTEGKGINVYTHSEMLPAHGYPE  163 (429)
T ss_pred             EEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
T ss_conf             8999798999999999863799930771765441356800


No 307
>PRK08774 consensus
Probab=37.57  E-value=24  Score=14.28  Aligned_cols=11  Identities=0%  Similarity=0.256  Sum_probs=3.9

Q ss_pred             CHHHHHHHHHH
Q ss_conf             68899999999
Q gi|254780655|r  567 GSELKIAVEAC  577 (673)
Q Consensus       567 G~~v~~al~aa  577 (673)
                      |..++..++=+
T Consensus       300 GQGlNlGi~Da  310 (402)
T PRK08774        300 AQGFNLGLRDA  310 (402)
T ss_pred             HCHHHHHHHHH
T ss_conf             02152569999


No 308
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=37.50  E-value=24  Score=14.27  Aligned_cols=32  Identities=22%  Similarity=0.235  Sum_probs=25.4

Q ss_pred             CEEEEECCHHH-HHHHHHHHHHHHCCCCEEEEE
Q ss_conf             29999526889-999999999997399439985
Q gi|254780655|r  560 QVTIFSSGSEL-KIAVEACEILSSRNISTRVVS  591 (673)
Q Consensus       560 dv~iia~G~~v-~~al~aa~~L~~~Gi~~~Vi~  591 (673)
                      ||.|+..|... ..|++.+..|++.|+++.+-.
T Consensus         3 dv~ii~~~~~~~~~a~~i~~~LR~~gi~v~~~~   35 (91)
T cd00859           3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDY   35 (91)
T ss_pred             EEEEEEECHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             899998186999999999999998899399973


No 309
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=37.18  E-value=25  Score=14.24  Aligned_cols=40  Identities=13%  Similarity=0.076  Sum_probs=30.6

Q ss_pred             CCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEE-CCCCCHH
Q ss_conf             729999526889999999999997399439985-7465810
Q gi|254780655|r  559 AQVTIFSSGSELKIAVEACEILSSRNISTRVVS-VPCFELF  598 (673)
Q Consensus       559 ~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~-~~s~k~l  598 (673)
                      ..|..++-|..+..++-.++.|++.|.++.+|- .++-..+
T Consensus       751 ~~Vv~vgGGvGiA~vyPiaKalke~GN~V~~IiGaR~kdll  791 (944)
T PRK12779        751 QTVVFCAGGVGLPPVYPIMRAHLRLGNHVTLISGFRAKEFL  791 (944)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEE
T ss_conf             74999915112414469999999859936999723561127


No 310
>cd01914 HCP Hybrid cluster protein (HCP), formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. HCP has three structural domains, an N-terminal alpha-helical domain, and two similar domains comprising a central beta-sheet flanked by alpha-helices. HCP contains two iron-sulfur clusters, one of which is a [Fe4-S4] cubane cluster similar to that of carbon monoxide dehydrogenase (CODH).  The second cluster, referred to as the hybrid cluster, is a hybrid [Fe4-S2-O2] center located at the interface of the three domains. Although the hybrid cluster is buried within the protein, it is accessible through a large hydrophobic cavity.
Probab=37.01  E-value=21  Score=14.77  Aligned_cols=40  Identities=20%  Similarity=0.305  Sum_probs=26.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCC
Q ss_conf             4444444067888888875110221022201334555700
Q gi|254780655|r  225 TLSVNGHDHHAITSTLRKAQLSDKPTMIACETVIGFGSPN  264 (673)
Q Consensus       225 ~~~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T~kG~G~~~  264 (673)
                      .|-|.|||+..+..-+++.+..+--+.-|......+|+|.
T Consensus       119 ~ILVSGHDL~dL~~LL~QTeg~GInVYTHgEMLPAH~YP~  158 (423)
T cd01914         119 GILVSGHDLKDLEELLEQTEGTGVDVYTHGEMLPAHGYPE  158 (423)
T ss_pred             EEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHH
T ss_conf             7999798989999999863799830772766541356810


No 311
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=36.13  E-value=12  Score=16.58  Aligned_cols=31  Identities=26%  Similarity=0.337  Sum_probs=16.8

Q ss_pred             EECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCC
Q ss_conf             95268899999999999973994399857465810008
Q gi|254780655|r  564 FSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQ  601 (673)
Q Consensus       564 ia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~  601 (673)
                      +++|.   .+++|.+.|++.|..+  +.+-+  .+|.+
T Consensus       122 iTTG~---Si~eai~~l~~~G~~V--~gv~~--ivDR~  152 (201)
T COG0461         122 ITTGG---SILEAVEALREAGAEV--VGVAV--IVDRQ  152 (201)
T ss_pred             CCCCH---HHHHHHHHHHHCCCEE--EEEEE--EEECC
T ss_conf             16787---6999999999869859--89999--99520


No 312
>PRK06475 salicylate hydroxylase; Provisional
Probab=36.01  E-value=26  Score=14.11  Aligned_cols=17  Identities=18%  Similarity=0.309  Sum_probs=9.7

Q ss_pred             CCHHHHHHHHHHHHHHH
Q ss_conf             26889999999999997
Q gi|254780655|r  566 SGSELKIAVEACEILSS  582 (673)
Q Consensus       566 ~G~~v~~al~aa~~L~~  582 (673)
                      .|.....|+|=|-.|++
T Consensus       308 ~GQGan~aieDA~~LA~  324 (400)
T PRK06475        308 AAQGAAMAIEDAAALAE  324 (400)
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             10137789999999999


No 313
>TIGR01139 cysK cysteine synthase A; InterPro: IPR005859    This model discriminates cysteine synthase A (CysK) and cysteine synthase B (CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblance to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded.    Cysteine synthase (O-acetylserine (thiol)-lyase, 2.5.1.47 from EC) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid. In bacteria such two forms of the enzyme are known (genes cysK and cysM). CysK differs from CysM in that it can also use sulphide instead of thiosulphate, to produce cysteine instead of cysteine thiosulphonate. ; GO: 0004124 cysteine synthase activity, 0006535 cysteine biosynthetic process from serine.
Probab=35.66  E-value=26  Score=14.07  Aligned_cols=39  Identities=15%  Similarity=0.121  Sum_probs=25.8

Q ss_pred             EEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             9856997299995268899999999999973994399857
Q gi|254780655|r  553 YISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSV  592 (673)
Q Consensus       553 ~~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~  592 (673)
                      +.+.|| =+.=|++|..|.-|++.|++++..|..+=+|-+
T Consensus       262 LA~eEG-iL~GISSGA~vaAAl~~Ak~~~n~dK~iV~i~P  300 (312)
T TIGR01139       262 LAKEEG-ILVGISSGAAVAAALKLAKRLENPDKLIVVILP  300 (312)
T ss_pred             HHHHCC-EEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             998678-010155789999999998732488988999827


No 314
>PRK03094 hypothetical protein; Provisional
Probab=35.42  E-value=26  Score=14.05  Aligned_cols=68  Identities=22%  Similarity=0.357  Sum_probs=40.8

Q ss_pred             HHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCEEEECCCCCCCCHHHHHH
Q ss_conf             99999997399439985746581000868899964367977999728602789998457981898357767688889999
Q gi|254780655|r  575 EACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIEAGLRQGWDAFIGSDGSFIGMQGFGASGSCDLLYQ  654 (673)
Q Consensus       575 ~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE~g~~~g~~~~~~~~~~~igid~Fg~sg~~~el~~  654 (673)
                      ...+.|+++|++  |+++.+..      .     .-.....+||             |.+.-.+|+.+-...+|   +.+
T Consensus        12 ~v~~~L~~~GY~--Vv~l~~~~------~-----a~~~Da~ViT-------------G~d~N~mGiqd~~t~~p---VI~   62 (80)
T PRK03094         12 DVQQALKQKGYE--VVTLNSEQ------D-----AQGCDCCVVT-------------GQDSNVMGIADTSTKGS---VIT   62 (80)
T ss_pred             HHHHHHHHCCCE--EEECCCCC------C-----CCCCCEEEEE-------------CCCCCCCCCCCCCCCCC---EEE
T ss_conf             999999977987--89668714------3-----3567889995-------------89765226441345687---486


Q ss_pred             HCCCCHHHHHHHHHHHH
Q ss_conf             80999899999999984
Q gi|254780655|r  655 HFGINAIAIVDMVERKL  671 (673)
Q Consensus       655 ~~Gld~~~I~~~i~~~L  671 (673)
                      .-|+|++.|++.+++.|
T Consensus        63 A~GlTaeEI~~~ve~r~   79 (80)
T PRK03094         63 ASGLTADEICQQVESRT   79 (80)
T ss_pred             CCCCCHHHHHHHHHHHC
T ss_conf             78999999999999861


No 315
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=35.03  E-value=27  Score=14.00  Aligned_cols=13  Identities=8%  Similarity=-0.169  Sum_probs=7.0

Q ss_pred             HHHHCCCCEEEEE
Q ss_conf             9997399439985
Q gi|254780655|r  579 ILSSRNISTRVVS  591 (673)
Q Consensus       579 ~L~~~Gi~~~Vi~  591 (673)
                      +++++|+++.|.-
T Consensus       358 ea~~~g~~~~~~~  370 (452)
T TIGR03452       358 EAREAGHDITVKI  370 (452)
T ss_pred             HHHHCCCCEEEEE
T ss_conf             9997599779999


No 316
>pfam12005 DUF3499 Protein of unknown function (DUF3499). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 125 to 163 amino acids in length.
Probab=34.97  E-value=20  Score=14.98  Aligned_cols=30  Identities=27%  Similarity=0.519  Sum_probs=21.0

Q ss_pred             HHHHHH-CCCCCCCCC---------CCCHHHHHHHHHHHH
Q ss_conf             998864-144444444---------440678888888751
Q gi|254780655|r  215 YARFRA-SGWNTLSVN---------GHDHHAITSTLRKAQ  244 (673)
Q Consensus       215 ~~~~~a-~Gw~~~~vd---------G~d~~~i~~a~~~ak  244 (673)
                      ..|+.+ .||++++.+         ..|+.+|.+|.+++-
T Consensus        49 a~rlTaP~GW~vvr~~~~~~~~~p~~dDL~ALAdAVREaa   88 (125)
T pfam12005        49 AERLTAPLGWEVVRLAGEFAPAEPDEDDLVALADAVREAA   88 (125)
T ss_pred             HHCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             8635688875778604777778977788999999998742


No 317
>TIGR01517 ATPase-IIB_Ca calcium-translocating P-type ATPase, PMCA-type; InterPro: IPR006408   This family describes the P-type ATPase responsible for translocating calcium ions across the plasma membrane of eukaryotes , out of the cell. In some organisms, this type of pump may also be found in vacuolar membranes . In humans and mice, at least, there are multiple isoforms of the PMCA pump with overlapping but not redundant functions. Accordingly, there are no human diseases linked to PMCA defects, although alterations of PMCA function do elicit physiological effects . The calcium P-type ATPases have been characterised as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump .; GO: 0005388 calcium-transporting ATPase activity, 0005509 calcium ion binding, 0005524 ATP binding, 0015085 calcium ion transmembrane transporter activity, 0006816 calcium ion transport, 0016020 membrane.
Probab=34.72  E-value=27  Score=13.97  Aligned_cols=21  Identities=10%  Similarity=-0.070  Sum_probs=12.0

Q ss_pred             HHCCCCHHHHHHHCCCCCEEEEECC
Q ss_conf             1000868899964367977999728
Q gi|254780655|r  597 LFFEQSDSYRAQIIGSSPIKIAIEA  621 (673)
Q Consensus       597 ~ld~~~~~~~~~il~~~~~~vtiE~  621 (673)
                      |.|+|.    .--|..-..+|+|.+
T Consensus       615 P~DK~l----LV~L~~~GeVVAVTG  635 (885)
T TIGR01517       615 PLDKQL----LVELKDMGEVVAVTG  635 (885)
T ss_pred             CHHHHH----HHHHCCCCCEEEEEC
T ss_conf             633378----784336831899846


No 318
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275   Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC).   Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain.   Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains .    This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=34.60  E-value=27  Score=13.96  Aligned_cols=19  Identities=21%  Similarity=0.214  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHCCCCEEEEE
Q ss_conf             9999999997399439985
Q gi|254780655|r  573 AVEACEILSSRNISTRVVS  591 (673)
Q Consensus       573 al~aa~~L~~~Gi~~~Vi~  591 (673)
                      |+.++..|++.|+++=+||
T Consensus       596 ~Vh~~~aLr~~Gye~ImiN  614 (1089)
T TIGR01369       596 CVHAVLALREAGYETIMIN  614 (1089)
T ss_pred             HHHHHHHHHHCCCEEEEEE
T ss_conf             8999999987299599997


No 319
>TIGR01466 cobJ_cbiH precorrin-3B C17-methyltransferase; InterPro: IPR006363   Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase .    There are at least two distinct cobalamin biosynthetic pathways in bacteria :  Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii.     Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans.   This entry represents CobJ and CbiH precorrin-3B C(17)-methyltransferase (2.1.1.131 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. In the aerobic pathway, once CobG has generated precorrin-3b, CobJ catalyses the methylation of precorrin-3b at C-17 to form precorrin-4 (the extruded methylated C-20 fragment is left attached as an acyl group at C-1) . In the corresponding anaerobic pathway, CbiH carries out this ring contraction, using cobalt-precorrin-3b as a substrate to generate a tetramethylated delta-lactone.   These proteins belong to the superfamily of tetrapyrrole (corrin/porphyrin) methylases (IPR000878 from INTERPRO), which includes methylases that use S-adenosylmethionine (S-AdoMet) in the methylation of diverse substrates. A number of other methylases in the cobalamin biosynthesis pathway also belong to this domain superfamily (precorrin-3 methylase, IPR012203 from INTERPRO, IPR012059 from INTERPRO, IPR012382 from INTERPRO, IPR012797 from INTERPRO and others), and a fusion of precorrin-3B C17-methyltransferases with precorrin isomerase is represented by IPR014422 from INTERPRO.   Nomenclature note: precorrin-3B C17-methyltransferase is one of the two methyltransferases often referred to as precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, 2.1.1.133 from EC). ; GO: 0008168 methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=34.02  E-value=28  Score=13.89  Aligned_cols=30  Identities=7%  Similarity=-0.028  Sum_probs=14.7

Q ss_pred             CCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             6997299995268899999999999973994399857465
Q gi|254780655|r  556 TPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCF  595 (673)
Q Consensus       556 ~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~  595 (673)
                      +++.+|.|...+.+-.       .   ..-....|||.|+
T Consensus       198 R~~e~v~ittL~~l~~-------~---~~~~~~l~DM~T~  227 (254)
T TIGR01466       198 REDEEVEITTLSELDE-------E---LEKELDLIDMLTT  227 (254)
T ss_pred             CCCCEEEEEEHHHCCC-------C---CCCCEEEECCEEE
T ss_conf             9985489976433000-------1---1101334434589


No 320
>PRK04965 nitric oxide reductase; Provisional
Probab=33.87  E-value=28  Score=13.88  Aligned_cols=33  Identities=15%  Similarity=0.028  Sum_probs=15.4

Q ss_pred             CCCEEEEE-CCCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf             47379985-6997299995268899999999999
Q gi|254780655|r  548 LGAYDYIS-TPNAQVTIFSSGSELKIAVEACEIL  580 (673)
Q Consensus       548 ~G~~~~~~-~~~~dv~iia~G~~v~~al~aa~~L  580 (673)
                      .|-|.... ++|.=+=.+-+|..+.+++.-.++|
T Consensus       342 ~g~~~~~~~~~g~l~G~vl~Gd~~~~~~~l~~~l  375 (378)
T PRK04965        342 QGMVAKAFDEAGQLRGFVVSEDRMKEAFPLLKTL  375 (378)
T ss_pred             CCEEEEEECCCCCEEEEEEECHHHHHHHHHHHHC
T ss_conf             9808999946996999999788888777888657


No 321
>KOG1250 consensus
Probab=33.52  E-value=28  Score=13.84  Aligned_cols=40  Identities=25%  Similarity=0.316  Sum_probs=27.1

Q ss_pred             CHHHHHCCC-CEEEECCHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf             101110122-1121120124577776520256783499952
Q gi|254780655|r  490 AALRAIPDL-LVLRPADSIETLECWQVALKEKNRPSVLSLS  529 (673)
Q Consensus       490 a~lr~iPnl-~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~  529 (673)
                      +.+|.+-+- .|+.|+.+.-++.++.+.+...+++.++..-
T Consensus       309 aI~~l~edek~vvEpAgaaaLaai~~~~~~~lk~~~vv~il  349 (457)
T KOG1250         309 AILRLFEDEKMVVEPAGAAALAAIYSGKLNHLKGKKVVSIL  349 (457)
T ss_pred             HHHHHHHHHHHEECCCHHHHHHHHHHCCCCCCCCCEEEEEC
T ss_conf             99999875200523624988999970565566776077651


No 322
>TIGR00877 purD phosphoribosylamine--glycine ligase; InterPro: IPR000115   Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase)  catalyzes the second step in the de novo biosynthesis of purine:  ATP + 5-phosphoribosylamine + glycine = ADP + P_i + 5'-phosphoribosylglycinamide  In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART.; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process.
Probab=32.79  E-value=29  Score=13.76  Aligned_cols=62  Identities=18%  Similarity=0.343  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHCCCCCCCCC-CCCCCCCCCCCCCC---C-HHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECC-CHHH
Q ss_conf             8865543322034555674-00026663445432---0-010032576200235678799872887622001-0035
Q gi|254780655|r  377 VNDCLPELIGGSADLTGSN-GTKTSQMKAISKSD---F-SGRYLHYGVREHAMAAAMNGIALHKGLAPYSGT-FMVF  447 (673)
Q Consensus       377 i~~~~p~iv~~sADl~~St-~~~~~~~~~~~~~~---~-p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~t-f~~F  447 (673)
                      .++.+|++.=      +.+ +..+.|++.|++..   + ++. ++.=|+++=+-=++.+|.- .| .||... |..|
T Consensus       222 ~aQDhKR~~e------gD~~GpNTGGMGAYsP~phlL~~~~e-~~~~~~~~I~~pt~~~l~~-eG-~~y~GvLYagl  289 (459)
T TIGR00877       222 PAQDHKRALE------GDKKGPNTGGMGAYSPAPHLLVFTEE-VEKRIAEEIVEPTVKALRK-EG-TPYKGVLYAGL  289 (459)
T ss_pred             CCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCEECCCH-HHHHHHHHHHHHHHHHHHH-CC-CCEEEEEEEEE
T ss_conf             2157650466------88878855786330278784423717-8999987778999999985-28-97247874138


No 323
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=32.62  E-value=29  Score=13.74  Aligned_cols=41  Identities=32%  Similarity=0.390  Sum_probs=29.6

Q ss_pred             CCEEEEE-ECCCC-----CCCHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf             8459998-43621-----1434455788765220223306999627632
Q gi|254780655|r  159 DHYTYVL-VGDGC-----LMEGISQEAISFAGHLGLSKLIVLWDNNGIS  201 (673)
Q Consensus       159 d~~v~~i-iGDG~-----l~eG~~~EAl~~A~~~~l~nli~i~d~N~~s  201 (673)
                      |-.|.|+ +.+||     --+|+.-|-+-+|..++.++|||.+  |.|-
T Consensus       110 D~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVav--NKMD  156 (428)
T COG5256         110 DVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAV--NKMD  156 (428)
T ss_pred             CEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEE--ECCC
T ss_conf             6799999888983101436587516789999856975699999--7156


No 324
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=32.25  E-value=16  Score=15.68  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHCCCCHHHHHCC
Q ss_conf             8888888751102210222013
Q gi|254780655|r  235 AITSTLRKAQLSDKPTMIACET  256 (673)
Q Consensus       235 ~i~~a~~~ak~~~kP~~I~~~T  256 (673)
                      ...+|+++||.++||.+++.+.
T Consensus         7 ~~eeal~~Ak~~~KPiml~~~~   28 (117)
T cd02959           7 TLEDGIKEAKDSGKPLMLLIHK   28 (117)
T ss_pred             EHHHHHHHHHHHCCCEEEEECC
T ss_conf             5899999999849999999732


No 325
>PRK06847 hypothetical protein; Provisional
Probab=31.98  E-value=30  Score=13.67  Aligned_cols=18  Identities=22%  Similarity=0.276  Sum_probs=10.9

Q ss_pred             ECCHHHHHHHHHHHHHHH
Q ss_conf             526889999999999997
Q gi|254780655|r  565 SSGSELKIAVEACEILSS  582 (673)
Q Consensus       565 a~G~~v~~al~aa~~L~~  582 (673)
                      ..|..++.+++=|-.|+.
T Consensus       297 ~~GqG~N~aieDA~~La~  314 (375)
T PRK06847        297 HLASGAGMAIEDAIVLAE  314 (375)
T ss_pred             CHHHHHHHHHHHHHHHHH
T ss_conf             523588899999999999


No 326
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321   These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=31.81  E-value=30  Score=13.65  Aligned_cols=23  Identities=17%  Similarity=0.333  Sum_probs=17.7

Q ss_pred             CCCCCEEEEECC---HHHHHHHHHHH
Q ss_conf             699729999526---88999999999
Q gi|254780655|r  556 TPNAQVTIFSSG---SELKIAVEACE  578 (673)
Q Consensus       556 ~~~~dv~iia~G---~~v~~al~aa~  578 (673)
                      +++|||+|||==   .++..|+.||+
T Consensus       198 ReDPDvILiGE~RD~ET~~~AL~AAE  223 (350)
T TIGR01420       198 REDPDVILIGEMRDLETVELALTAAE  223 (350)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf             02898899825562789999998742


No 327
>TIGR00963 secA preprotein translocase, SecA subunit; InterPro: IPR000185   Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component. . From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome.     The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) . The chaperone protein SecB  is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion .   SecA is a cytoplasmic protein of 800 to 960 amino acid residues. Homologs of secA are also encoded in the chloroplast genome of some algae  as well as in the nuclear genome of plants . It could be involved in the intraorganellar protein transport into thylakoids.; GO: 0005524 ATP binding, 0006605 protein targeting, 0006886 intracellular protein transport.
Probab=31.57  E-value=29  Score=13.78  Aligned_cols=32  Identities=16%  Similarity=0.262  Sum_probs=21.3

Q ss_pred             CEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             299995268899999999999973994399857
Q gi|254780655|r  560 QVTIFSSGSELKIAVEACEILSSRNISTRVVSV  592 (673)
Q Consensus       560 dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~  592 (673)
                      .=+||||= -|....-.++.|++.||.=.|.|.
T Consensus       436 qPvLvGT~-svE~SE~LS~lL~~~~I~H~VLNA  467 (904)
T TIGR00963       436 QPVLVGTT-SVEKSELLSKLLKERGIPHNVLNA  467 (904)
T ss_pred             CCEEEEEC-CHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             98777522-177789999999857898122478


No 328
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=31.52  E-value=30  Score=13.61  Aligned_cols=14  Identities=14%  Similarity=0.147  Sum_probs=7.7

Q ss_pred             HHHHCCCCEEEEEC
Q ss_conf             99973994399857
Q gi|254780655|r  579 ILSSRNISTRVVSV  592 (673)
Q Consensus       579 ~L~~~Gi~~~Vi~~  592 (673)
                      +++++|++..|.-.
T Consensus       364 ~a~~~g~~~~v~~~  377 (465)
T PRK05249        364 ELTAAKVPYEVGRA  377 (465)
T ss_pred             HHHHCCCCEEEEEE
T ss_conf             99976998799999


No 329
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=30.85  E-value=31  Score=13.54  Aligned_cols=11  Identities=27%  Similarity=0.157  Sum_probs=4.6

Q ss_pred             HCCCCEEEEEC
Q ss_conf             73994399857
Q gi|254780655|r  582 SRNISTRVVSV  592 (673)
Q Consensus       582 ~~Gi~~~Vi~~  592 (673)
                      ++|+++.+...
T Consensus       363 ~~g~~~~~~~~  373 (460)
T PRK06292        363 AAGIDYVVGKV  373 (460)
T ss_pred             HCCCCEEEEEE
T ss_conf             76997799999


No 330
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.72  E-value=31  Score=13.52  Aligned_cols=54  Identities=24%  Similarity=0.286  Sum_probs=36.5

Q ss_pred             CCEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             8779985652018999999970768899889864000388798898888998730688863
Q gi|254780655|r   72 RDRFVLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPL  132 (673)
Q Consensus        72 rDr~v~s~GH~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~l  132 (673)
                      .|-+|.-.||...+-=+.|.-.|++-   .-|++-+..|++...    .+..|..|.+|+.
T Consensus         4 ~dvvVIGaG~~GL~aAa~LA~~G~~V---~VlE~~~~~GG~a~t----~e~~Gf~fd~G~~   57 (487)
T COG1233           4 YDVVVIGAGLNGLAAAALLARAGLKV---TVLEKNDRVGGRART----FELDGFRFDTGPS   57 (487)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEE---EEEECCCCCCCCEEE----EEECCEEECCCCH
T ss_conf             62999898878999999999689979---999637888772466----7657779657326


No 331
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=30.39  E-value=21  Score=14.70  Aligned_cols=25  Identities=24%  Similarity=0.363  Sum_probs=10.5

Q ss_pred             CCEEEECCHHHHHHHHHHHHCCCCC
Q ss_conf             2112112012457777652025678
Q gi|254780655|r  498 LLVLRPADSIETLECWQVALKEKNR  522 (673)
Q Consensus       498 l~v~~P~d~~E~~~~~~~al~~~~g  522 (673)
                      +.|+.|.|..+...+--.|+++-+.
T Consensus       161 ~ivvkPGD~~kvkDi~i~alesfDR  185 (355)
T PRK11709        161 CIVVKPGDVVKVKDIEIHALDAFDR  185 (355)
T ss_pred             EEEECCCCEEEEEEEEEEEECCCCC
T ss_conf             7995489878871269998504562


No 332
>KOG0450 consensus
Probab=30.25  E-value=32  Score=13.47  Aligned_cols=79  Identities=18%  Similarity=0.194  Sum_probs=48.0

Q ss_pred             EEEEECCCCCC-CHHHHHHHHHHHH--HCCCCEEEEEECCCCCCCC--CCCC--CCCCCHHHHHHHCCCCCCCCCCCCHH
Q ss_conf             99984362114-3445578876522--0223306999627632232--2355--67821799886414444444444067
Q gi|254780655|r  162 TYVLVGDGCLM-EGISQEAISFAGH--LGLSKLIVLWDNNGISIDG--PISL--ADSTDQYARFRASGWNTLSVNGHDHH  234 (673)
Q Consensus       162 v~~iiGDG~l~-eG~~~EAl~~A~~--~~l~nli~i~d~N~~si~~--~~~~--~~~~~~~~~~~a~Gw~~~~vdG~d~~  234 (673)
                      -+-+-||++.. .|+.+|.+.+-.-  +-..--|-|+-||++.-.+  ....  ..++|+++-   .+-....|+++|++
T Consensus       404 ~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTDPR~aRSspYcTDvar~---v~aPIFHVNaDD~E  480 (1017)
T KOG0450         404 GILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTDPRFARSSPYCTDVARV---VNAPIFHVNADDPE  480 (1017)
T ss_pred             EEEEECCHHHCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHH---HCCCEEEECCCCHH
T ss_conf             899854511036744888614445777656974899972621210486422479873568987---08975765588769


Q ss_pred             HHHHHHHHH
Q ss_conf             888888875
Q gi|254780655|r  235 AITSTLRKA  243 (673)
Q Consensus       235 ~i~~a~~~a  243 (673)
                      ++..+.+-|
T Consensus       481 AV~~vc~vA  489 (1017)
T KOG0450         481 AVMHVCKVA  489 (1017)
T ss_pred             HHHHHHHHH
T ss_conf             999999999


No 333
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=30.25  E-value=32  Score=13.47  Aligned_cols=25  Identities=16%  Similarity=0.266  Sum_probs=10.2

Q ss_pred             CCEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf             7299995268899999999999973
Q gi|254780655|r  559 AQVTIFSSGSELKIAVEACEILSSR  583 (673)
Q Consensus       559 ~dv~iia~G~~v~~al~aa~~L~~~  583 (673)
                      .++.+||.|+.+.-.+...+.+.+.
T Consensus       104 ~~ivlIAgG~GitP~~s~l~~~~~~  128 (231)
T cd06215         104 DKLLLLSAGSGITPMMSMARWLLDT  128 (231)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf             8789998167778479999999970


No 334
>PRK08132 hypothetical protein; Provisional
Probab=30.05  E-value=32  Score=13.44  Aligned_cols=33  Identities=27%  Similarity=0.217  Sum_probs=17.0

Q ss_pred             CCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             7299995268899999999999973994399857
Q gi|254780655|r  559 AQVTIFSSGSELKIAVEACEILSSRNISTRVVSV  592 (673)
Q Consensus       559 ~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~  592 (673)
                      ...+|+..+... .+..+++.+...++.++++.+
T Consensus       455 ~~f~LL~~~~~~-~~~~~~~~~~~~~~~~~~~~~  487 (549)
T PRK08132        455 GGFTLLLFGSAG-DAAALPQALRGAGIPVRLVLV  487 (549)
T ss_pred             CCEEEEEECCCC-CHHHHHHHHHHCCCCEEEEEE
T ss_conf             977999837975-204456666423884489997


No 335
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial; InterPro: IPR012803    Members of this family represent the alpha subunit of the mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (4.2.1.17 from EC) and 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC). Some characterization of these proteins has been done in human (P40939 from SWISSPROT), pig (Q29554 from SWISSPROT) and rat (Q64428 from SWISSPROT). The beta subunit has acetyl-CoA C-acyltransferase (2.3.1.16 from EC) activity.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0004300 enoyl-CoA hydratase activity, 0006635 fatty acid beta-oxidation, 0005739 mitochondrion, 0016507 fatty acid beta-oxidation multienzyme complex.
Probab=30.00  E-value=32  Score=13.44  Aligned_cols=102  Identities=18%  Similarity=0.216  Sum_probs=62.8

Q ss_pred             ECCCCCCCCCCCCCHHHHCCCCCHHHHHC----CCCEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf             02454333333331010002221011101----22112112012457777652025678349995244443345665532
Q gi|254780655|r  468 VLTHDSIGLGEDGPTHQPVEHLAALRAIP----DLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESN  543 (673)
Q Consensus       468 v~th~gi~~G~DGpTHq~iedia~lr~iP----nl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R~~~p~~~~~~~~~  543 (673)
                      |..||=|.   -.-|=-||.+||.-..=|    +|.+|.|-|--|+.+++.+     ++-     ++.....     ...
T Consensus       442 vp~hciiA---sNTSAlPI~~IAA~S~RPeKViGMHYFSPVdKMQLLEIIT~-----~~T-----SkdT~A~-----Ava  503 (740)
T TIGR02441       442 VPPHCIIA---SNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIITH-----DGT-----SKDTLAS-----AVA  503 (740)
T ss_pred             CCCCCEEE---CCCCCCCHHHHCCCCCCCCCEEECCCCCCCCHHCCCEEECC-----CCC-----CHHHHHH-----HHH
T ss_conf             58873572---05553674554144688882130101471011000134548-----898-----7778999-----998


Q ss_pred             CCCCCCCEEEEECCCC-CEEEEECCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             2123473799856997-29999526889999999999997399439985
Q gi|254780655|r  544 NLCALGAYDYISTPNA-QVTIFSSGSELKIAVEACEILSSRNISTRVVS  591 (673)
Q Consensus       544 ~~~~~G~~~~~~~~~~-dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~  591 (673)
                      -....|+-+++-..++ =-+.-..|+|+.+++    +|-|||++..=+|
T Consensus       504 vGLKQGKvvivVkDgPGFyttRcL~pM~aE~~----RlLQEGvDPk~lD  548 (740)
T TIGR02441       504 VGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVI----RLLQEGVDPKKLD  548 (740)
T ss_pred             HHCCCCCEEEEEECCCCCEEEECCHHHHHHHH----HHHHCCCCHHHHH
T ss_conf             41036627999743997457310225799999----9973588868887


No 336
>PRK10310 galactitol-specific PTS system component IIB; Provisional
Probab=29.98  E-value=32  Score=13.44  Aligned_cols=33  Identities=24%  Similarity=0.325  Sum_probs=23.6

Q ss_pred             EEEEECCHHHHH----HHHHHHHHHHCCCCEEEEECC
Q ss_conf             999952688999----999999999739943998574
Q gi|254780655|r  561 VTIFSSGSELKI----AVEACEILSSRNISTRVVSVP  593 (673)
Q Consensus       561 v~iia~G~~v~~----al~aa~~L~~~Gi~~~Vi~~~  593 (673)
                      -+|+++|+.+..    |-+..+.|+++||++.++-..
T Consensus         4 kIlVACGsGIATSTvva~kv~~~~~e~gi~v~i~Q~~   40 (94)
T PRK10310          4 KIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCR   40 (94)
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf             5999858837599999999999999859806899974


No 337
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain.  The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation  for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=29.94  E-value=32  Score=13.43  Aligned_cols=75  Identities=12%  Similarity=0.114  Sum_probs=44.1

Q ss_pred             CHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCEEEECCCCCC
Q ss_conf             68899999999999973994399857465810008688999643679779997286027899984579818983577676
Q gi|254780655|r  567 GSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIEAGLRQGWDAFIGSDGSFIGMQGFGAS  646 (673)
Q Consensus       567 G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE~g~~~g~~~~~~~~~~~igid~Fg~s  646 (673)
                      ||-+--|---.++|++.|+++.|.+.+    .+        ++=.....+||-|+ +..- ++-...+...+.++.|-.+
T Consensus        12 GSSaMgas~lrk~lk~~gl~i~V~n~a----I~--------~lp~dadlVVt~~~-L~~r-Ak~~~p~a~~i~v~nfL~~   77 (87)
T cd05567          12 GSSAMGASVLRKKLKKAGLEIPVTNSA----ID--------ELPSDADLVVTHAS-LTDR-AKKKAPQAQHLSVDNFLNT   77 (87)
T ss_pred             CHHHHHHHHHHHHHHHCCCCCEEEEEE----HH--------HCCCCCCEEEEHHH-HHHH-HHHHCCCCEEEEHHHHCCC
T ss_conf             589999999999999849983699801----65--------49986438886699-9999-9976899889965872588


Q ss_pred             CCHHHHHHH
Q ss_conf             888899998
Q gi|254780655|r  647 GSCDLLYQH  655 (673)
Q Consensus       647 g~~~el~~~  655 (673)
                      ..+++|.++
T Consensus        78 ~~yd~lv~~   86 (87)
T cd05567          78 PEYDELIER   86 (87)
T ss_pred             HHHHHHHHH
T ss_conf             779999972


No 338
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS).  In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=29.94  E-value=32  Score=13.43  Aligned_cols=31  Identities=19%  Similarity=0.343  Sum_probs=21.4

Q ss_pred             EEEECCHHHHH----HHHHHHHHHHCCCCEEEEEC
Q ss_conf             99952688999----99999999973994399857
Q gi|254780655|r  562 TIFSSGSELKI----AVEACEILSSRNISTRVVSV  592 (673)
Q Consensus       562 ~iia~G~~v~~----al~aa~~L~~~Gi~~~Vi~~  592 (673)
                      +|+++|+.+..    +-+..+.|+++||++.+...
T Consensus         3 IlVaCGsGiaTSt~v~~ki~~~l~e~gi~~~i~~~   37 (89)
T cd05566           3 ILVACGTGVATSTVVASKVKELLKENGIDVKVEQC   37 (89)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             99998997039999999999999986991599997


No 339
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.94  E-value=32  Score=13.43  Aligned_cols=43  Identities=19%  Similarity=0.172  Sum_probs=30.7

Q ss_pred             CCCCEEEEECCHHH-HHHHHHHHHHHHCCCCEEEEECCCCCHHCCC
Q ss_conf             99729999526889-9999999999973994399857465810008
Q gi|254780655|r  557 PNAQVTIFSSGSEL-KIAVEACEILSSRNISTRVVSVPCFELFFEQ  601 (673)
Q Consensus       557 ~~~dv~iia~G~~v-~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~  601 (673)
                      ...+|.++..|... ..|++.++.|++.|+++.|.-..  +.+.+|
T Consensus       334 ~~~~v~v~~~~~~~~~~a~~la~~LR~~g~~~~~~~~~--r~~k~q  377 (429)
T COG0124         334 TRVDVYVVPLGEDAEPEALKLAQKLRAAGISVEVDYSG--RKLKKQ  377 (429)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECC--CCHHHH
T ss_conf             77888999848615999999999999759948998556--568999


No 340
>TIGR00874 talAB transaldolase; InterPro: IPR004730   Transaldolase (2.2.1.2 from EC) catalyzes the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate. This enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways. Transaldolase is an enzyme of about 34 Kd whose sequence has been well conserved throughout evolution. A lysine has been implicated  in the catalytic mechanism of the enzyme; it acts as a nucleophilic group that attacks the carbonyl group of fructose-6-phosphate.   Transaldolase is evolutionary related  to a bacterial protein of about 20 Kd (known as talC in Escherichia coli), whose exact function is not yet known.; GO: 0004801 transaldolase activity, 0006098 pentose-phosphate shunt, 0005737 cytoplasm.
Probab=29.82  E-value=32  Score=13.42  Aligned_cols=29  Identities=21%  Similarity=0.308  Sum_probs=16.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHH-CCCCHHHHH
Q ss_conf             4444444406788888887511-022102220
Q gi|254780655|r  224 NTLSVNGHDHHAITSTLRKAQL-SDKPTMIAC  254 (673)
Q Consensus       224 ~~~~vdG~d~~~i~~a~~~ak~-~~kP~~I~~  254 (673)
                      .++..|-=|+++|..-  .-++ +--|++|..
T Consensus        11 t~vVADtGD~~~i~~~--~pqDaTTNPSLIL~   40 (324)
T TIGR00874        11 TVVVADTGDIEAIKKY--QPQDATTNPSLILA   40 (324)
T ss_pred             CEEEECCCCHHHHHHC--CCCCCCCCHHHHHH
T ss_conf             7788527878999736--89986447389998


No 341
>pfam01918 Alba Alba. Alba is a novel chromosomal protein that coats archaeal DNA without compacting it.
Probab=29.56  E-value=32  Score=13.39  Aligned_cols=28  Identities=29%  Similarity=0.354  Sum_probs=24.4

Q ss_pred             CCCCCEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf             6997299995268899999999999973
Q gi|254780655|r  556 TPNAQVTIFSSGSELKIAVEACEILSSR  583 (673)
Q Consensus       556 ~~~~dv~iia~G~~v~~al~aa~~L~~~  583 (673)
                      .+...|.|.|.|.-+..|+..|++|+++
T Consensus        25 ~~~~~V~i~g~G~aI~kaV~vaei~k~r   52 (67)
T pfam01918        25 GGADEVVLKGLGRAISKAVSVAEILKRR   52 (67)
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf             9987799995278889899999999998


No 342
>TIGR02065 ECX1 exosome complex exonuclease 1; InterPro: IPR011807   The PH (phosphorolytic) domain is responsible for 3'-5' exoribonuclease activity, although in some proteins this domain has lost its catalytic function. An active PH domain uses inorganic phosphate as a nucleophile, adding it across the phosphodiester bond between the end two nucleotides in order to release ribonucleoside 5'-diphosphate (rNDP) from the 3' end of the RNA substrate.   PH domains can be found in bacterial/organelle RNases and PNPases (polynucleotide phosphorylases) , as well as in archaeal and eukaryotic RNA exosomes , , the later acting as nano-compartments for the degradation or processing of RNA (including mRNA, rRNA, snRNA and snoRNA). Bacterial/organelle PNPases share a common barrel structure with RNA exosomes, consisting of a hexameric ring of PH domains that act as a degradation chamber, and an S1-domain/KH-domain containing cap that binds the RNA substrate (and sometimes accessory proteins) in order to regulate and restrict entry into the degradation chamber . Unstructured RNA substrates feed in through the pore made by the S1 domains, are degraded by the PH domain ring, and exit as nucleotides via the PH pore at the opposite end of the barrel , .   This entry represents a family of archaeal proteins that are orthologous to the eukaryotic exosome protein Rrp41. It is somewhat more distantly related to the bacterial protein ribonuclease PH. An exosome-like complex has been demonstrated experimentally for the Archaea in Sulfolobus solfataricus, so members of this family are designated exosome complex exonuclease 1, after usage in SwissProt .; GO: 0016896 exoribonuclease activity producing 5'-phosphomonoesters, 0000178 exosome (RNase complex).
Probab=29.44  E-value=28  Score=13.81  Aligned_cols=13  Identities=15%  Similarity=0.087  Sum_probs=7.6

Q ss_pred             CCCCHHHCCCCCC
Q ss_conf             4320010032576
Q gi|254780655|r  407 KSDFSGRYLHYGV  419 (673)
Q Consensus       407 ~~~~p~r~i~~GI  419 (673)
                      -+.||--.|||-|
T Consensus       108 ~E~fPRt~IDVF~  120 (231)
T TIGR02065       108 LEQFPRTAIDVFV  120 (231)
T ss_pred             EECCCCCCCEEEE
T ss_conf             2238895010578


No 343
>PRK08163 salicylate hydroxylase; Provisional
Probab=29.20  E-value=33  Score=13.34  Aligned_cols=16  Identities=19%  Similarity=0.146  Sum_probs=7.3

Q ss_pred             CCHHHHHHHHHHHHHH
Q ss_conf             2688999999999999
Q gi|254780655|r  566 SGSELKIAVEACEILS  581 (673)
Q Consensus       566 ~G~~v~~al~aa~~L~  581 (673)
                      .|.....|++=|-.|.
T Consensus       302 ~GQGan~aieDA~~La  317 (396)
T PRK08163        302 MAQGACMALEDAVTLG  317 (396)
T ss_pred             CCCCHHHHHHHHHHHH
T ss_conf             3661878999999999


No 344
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=29.15  E-value=33  Score=13.34  Aligned_cols=14  Identities=7%  Similarity=-0.021  Sum_probs=7.5

Q ss_pred             HHHHCCCCEEEEEC
Q ss_conf             99973994399857
Q gi|254780655|r  579 ILSSRNISTRVVSV  592 (673)
Q Consensus       579 ~L~~~Gi~~~Vi~~  592 (673)
                      +++++|+++.|...
T Consensus       364 ~a~~~g~~~~~~~~  377 (464)
T PRK05976        364 EAKEAGYDVKVGKF  377 (464)
T ss_pred             HHHHCCCCEEEEEE
T ss_conf             99876998899999


No 345
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=28.70  E-value=33  Score=13.28  Aligned_cols=15  Identities=20%  Similarity=0.364  Sum_probs=8.1

Q ss_pred             HHHHCCCCEEEEECC
Q ss_conf             999739943998574
Q gi|254780655|r  579 ILSSRNISTRVVSVP  593 (673)
Q Consensus       579 ~L~~~Gi~~~Vi~~~  593 (673)
                      +++++|+++++...+
T Consensus       362 ea~~~g~~~~~~~~~  376 (462)
T PRK06416        362 KAKEEGFDVKVVRFP  376 (462)
T ss_pred             HHHHCCCCEEEEEEE
T ss_conf             999759977999998


No 346
>pfam12500 DUF3706 Protein of unknown function (DUF3706). This domain family is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=28.61  E-value=34  Score=13.27  Aligned_cols=41  Identities=15%  Similarity=0.152  Sum_probs=30.0

Q ss_pred             CCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHH
Q ss_conf             997299995268899999999999973994399857465810
Q gi|254780655|r  557 PNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELF  598 (673)
Q Consensus       557 ~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~l  598 (673)
                      .+..+.++++|-.+..-+..|+.|++.|.+++.-+ .+-.|.
T Consensus        99 ~g~~vLvlGt~E~my~P~~lA~~l~~~g~~v~~~s-TTRSPi  139 (199)
T pfam12500        99 KGERVLVLGTGEFMYLPFLLAERLEQAGADVRYQS-TTRSPI  139 (199)
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEC-CCCCCE
T ss_conf             99858998051187899999999975695489960-577870


No 347
>PRK13529 malate dehydrogenase; Provisional
Probab=28.46  E-value=34  Score=13.26  Aligned_cols=78  Identities=12%  Similarity=0.101  Sum_probs=33.5

Q ss_pred             CCCCEEEECCHHHHHHHH-HHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEE--EECCHHH--
Q ss_conf             122112112012457777-65202567834999524444334566553221234737998569972999--9526889--
Q gi|254780655|r  496 PDLLVLRPADSIETLECW-QVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTPNAQVTI--FSSGSEL--  570 (673)
Q Consensus       496 Pnl~v~~P~d~~E~~~~~-~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~~~dv~i--ia~G~~v--  570 (673)
                      +.-.||.=||+....++. ..|++..+|-. |.-+-++.|.+  .+       .|+.....+.+.-.+.  |+.|.++  
T Consensus       409 erPIIF~LSNPT~~aE~tpeda~~wT~Gra-i~AtGSPF~pv--~~-------~G~~~~p~Q~NN~yiFPGiglGa~~~~  478 (563)
T PRK13529        409 ERPIIFPLSNPTSRAEATPEDIIAWTDGRA-LVATGSPFAPV--EY-------NGKTYPIGQCNNAYIFPGIGLGVIASG  478 (563)
T ss_pred             CCCEEEECCCCCCCCCCCHHHHHHHCCCCE-EEEECCCCCCC--CC-------CCEEECCCCCCEEEECCHHHHHHHHCC
T ss_conf             998898678984325589899974116978-99968988871--20-------881655666632466535788999818


Q ss_pred             ------HHHHHHHHHHHHC
Q ss_conf             ------9999999999973
Q gi|254780655|r  571 ------KIAVEACEILSSR  583 (673)
Q Consensus       571 ------~~al~aa~~L~~~  583 (673)
                            ...+.||+.|++.
T Consensus       479 a~~Itd~M~~aAA~aLA~~  497 (563)
T PRK13529        479 ARRVTDEMLMAAAHALAEC  497 (563)
T ss_pred             CCCCCHHHHHHHHHHHHHC
T ss_conf             8578899999999999853


No 348
>PRK07308 flavodoxin; Validated
Probab=28.45  E-value=34  Score=13.26  Aligned_cols=17  Identities=12%  Similarity=0.051  Sum_probs=6.2

Q ss_pred             HHHHHHCCCCEEEEECC
Q ss_conf             99999739943998574
Q gi|254780655|r  577 CEILSSRNISTRVVSVP  593 (673)
Q Consensus       577 a~~L~~~Gi~~~Vi~~~  593 (673)
                      ++.|++.|++++|.++.
T Consensus        23 ~~~l~~~G~~v~v~~~~   39 (147)
T PRK07308         23 ADKLQELGHDVDVDECT   39 (147)
T ss_pred             HHHHHHCCCCEEEECCC
T ss_conf             99999759940761136


No 349
>pfam04273 DUF442 Putative phosphatase (DUF442). Although this domain is uncharacterized it seems likely that it performs a phosphatase function.
Probab=28.12  E-value=34  Score=13.22  Aligned_cols=45  Identities=20%  Similarity=0.260  Sum_probs=20.5

Q ss_pred             CHHHHHHHCCCCCCC--CCCCC-HHHHHHHHHHH-HHCCCCHHHHHCCC
Q ss_conf             179988641444444--44440-67888888875-11022102220133
Q gi|254780655|r  213 DQYARFRASGWNTLS--VNGHD-HHAITSTLRKA-QLSDKPTMIACETV  257 (673)
Q Consensus       213 ~~~~~~~a~Gw~~~~--vdG~d-~~~i~~a~~~a-k~~~kP~~I~~~T~  257 (673)
                      .+.+..++.|..++.  |++.+ -.+....+.++ ....+|++++|+|-
T Consensus        48 ~~~~~a~~~Gl~y~~iPv~~~~~t~~~v~~f~~~l~~~~~Pvl~~CrSG   96 (110)
T pfam04273        48 AEQAAARAAGLAYRFIPVISGQITEADVEAFQRALAAAEGPVLAHCRSG   96 (110)
T ss_pred             HHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf             9999999839979996447789899999999999985899899988998


No 350
>pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase.
Probab=27.75  E-value=35  Score=13.17  Aligned_cols=14  Identities=0%  Similarity=-0.192  Sum_probs=6.3

Q ss_pred             CCCCEEEEEECCCC
Q ss_conf             67845999843621
Q gi|254780655|r  157 LIDHYTYVLVGDGC  170 (673)
Q Consensus       157 ~~d~~v~~iiGDG~  170 (673)
                      -++.+|.-+--+.+
T Consensus       104 rf~t~V~~V~~~~d  117 (532)
T pfam00743       104 QFKTTVCSVTKRPD  117 (532)
T ss_pred             ECCCEEEEEEECCC
T ss_conf             65778999997667


No 351
>PRK11574 hypothetical protein; Provisional
Probab=27.52  E-value=35  Score=13.14  Aligned_cols=17  Identities=18%  Similarity=0.335  Sum_probs=5.9

Q ss_pred             HHHHHHHHCCCCHHHHH
Q ss_conf             88887511022102220
Q gi|254780655|r  238 STLRKAQLSDKPTMIAC  254 (673)
Q Consensus       238 ~a~~~ak~~~kP~~I~~  254 (673)
                      +.+++..+.+|+..=+|
T Consensus        90 ~~lk~~~~~gK~iAAIC  106 (196)
T PRK11574         90 ETVKQFHRSGRIVAAIC  106 (196)
T ss_pred             HHHHHHHHCCCEEEEEC
T ss_conf             99999998799199982


No 352
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family; InterPro: IPR011875    This entry describes Corynebacterium glutamicum GlgA and closely related proteins in other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related IPR011835 from INTERPRO, family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor ..
Probab=27.39  E-value=35  Score=13.13  Aligned_cols=38  Identities=29%  Similarity=0.357  Sum_probs=21.2

Q ss_pred             CCEEEE-CCHHHHHHHHHHHHCCCCCCEEE---EECCCCC-CCC
Q ss_conf             211211-20124577776520256783499---9524444-334
Q gi|254780655|r  498 LLVLRP-ADSIETLECWQVALKEKNRPSVL---SLSRQNL-PFL  536 (673)
Q Consensus       498 l~v~~P-~d~~E~~~~~~~al~~~~gP~~i---r~~R~~~-p~~  536 (673)
                      +.-|+| +|..-....=++.++. +.|.++   |.+||+. |++
T Consensus       197 ~~~y~~~~~~~~~~v~~~~Gid~-~rP~~lFVGRItRQKGv~~L  239 (416)
T TIGR02149       197 TKEYKPAADDDGNKVLDRYGIDR-SRPYVLFVGRITRQKGVPHL  239 (416)
T ss_pred             HHHHCCCCCCCHHHHHHHHCCCC-CCCEEEEEEEEECCCCHHHH
T ss_conf             57606888874113466326799-88878985202031655899


No 353
>TIGR00580 mfd transcription-repair coupling factor; InterPro: IPR004576 All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transcribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognised by TcrF, which releases RNAP and the truncated transcript. The TcrF may replace RNAP at the lesion site and then recruit the UvrA/B/C repair system.; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=27.07  E-value=36  Score=13.09  Aligned_cols=45  Identities=13%  Similarity=0.121  Sum_probs=32.2

Q ss_pred             HCCCCCHHHHHCC-----CCEEEECCHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf             0022210111012-----211211201245777765202567834999524
Q gi|254780655|r  485 PVEHLAALRAIPD-----LLVLRPADSIETLECWQVALKEKNRPSVLSLSR  530 (673)
Q Consensus       485 ~iedia~lr~iPn-----l~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R  530 (673)
                      |+-|||.+..=|-     -+.+.|-|+.-++.|++.=+. .+|-+|..++|
T Consensus       681 g~RdlS~I~TPP~~R~pv~T~v~~~~~~~~~~AI~rEL~-RgGQvFyv~Nr  730 (997)
T TIGR00580       681 GIRDLSIIATPPEDRLPVRTFVMEYDDELVREAIRRELL-RGGQVFYVHNR  730 (997)
T ss_pred             HHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHC-CCCEEEEEECC
T ss_conf             553322105788877424887742786899999997531-39818998088


No 354
>pfam01565 FAD_binding_4 FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyses the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidizes the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan.
Probab=27.01  E-value=36  Score=13.08  Aligned_cols=82  Identities=17%  Similarity=0.151  Sum_probs=43.4

Q ss_pred             CEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC---CCEEEEECCCCCEEEEECCHHHHHHHH
Q ss_conf             11211201245777765202567834999524444334566553221234---737998569972999952688999999
Q gi|254780655|r  499 LVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCAL---GAYDYISTPNAQVTIFSSGSELKIAVE  575 (673)
Q Consensus       499 ~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~---G~~~~~~~~~~dv~iia~G~~v~~al~  575 (673)
                      .|+.|.+.+|+..++++|-++ +-|+.+|-...+.-...  ....-.+..   -+..... .....+.+..|....+.. 
T Consensus         3 ~vv~P~s~~ev~~~v~~a~~~-~~~v~~~g~G~~~~~~~--~~~gi~i~l~~~~~i~~~d-~~~~~v~v~aG~~~~~l~-   77 (138)
T pfam01565         3 AVVRPESEEEVAAIVRLANEH-GLPVLVRGGGSSLLGDA--VTGGVVLDLSRLNGILEID-PENGTATVEAGVTLGDLV-   77 (138)
T ss_pred             EEEECCCHHHHHHHHHHHHHC-CCCEEEECCCEECCCCC--CCCEEEEECCCCCCCEEEE-CCCCEEEEECCCCHHHHH-
T ss_conf             999909999999999999986-99689988966727986--3995999956899726885-388489995780999999-


Q ss_pred             HHHHHHHCCCCE
Q ss_conf             999999739943
Q gi|254780655|r  576 ACEILSSRNIST  587 (673)
Q Consensus       576 aa~~L~~~Gi~~  587 (673)
                        +.|.++|...
T Consensus        78 --~~l~~~g~~~   87 (138)
T pfam01565        78 --RALAAKGLLL   87 (138)
T ss_pred             --HHHHHCCCEE
T ss_conf             --9999729988


No 355
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=26.14  E-value=37  Score=12.97  Aligned_cols=28  Identities=14%  Similarity=0.018  Sum_probs=12.1

Q ss_pred             HHHHHHHCCCCCCCCC-----CCCHHHHHHHHH
Q ss_conf             7998864144444444-----440678888888
Q gi|254780655|r  214 QYARFRASGWNTLSVN-----GHDHHAITSTLR  241 (673)
Q Consensus       214 ~~~~~~a~Gw~~~~vd-----G~d~~~i~~a~~  241 (673)
                      ..+..+.+|.++..+.     .-|.+++.++++
T Consensus        89 ~~~~a~~~g~~~~~i~~~~~~~~~~~~v~~~l~  121 (356)
T cd06451          89 WADMAERYGADVDVVEKPWGEAVSPEEIAEALE  121 (356)
T ss_pred             HHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf             676441159723998689999789899998863


No 356
>TIGR00464 gltX_bact glutamyl-tRNA synthetase; InterPro: IPR004527   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .    Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of E. coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure . ; GO: 0000166 nucleotide binding, 0004818 glutamate-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006424 glutamyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=26.01  E-value=37  Score=12.96  Aligned_cols=77  Identities=18%  Similarity=0.349  Sum_probs=39.5

Q ss_pred             CCC--CEEEEEECCCCCCCCCCCC---CCCC-CHHHHHHHCCCC-CCC------CCCCCHHH-------HHHHHHHHHHC
Q ss_conf             223--3069996276322322355---6782-179988641444-444------44440678-------88888875110
Q gi|254780655|r  187 GLS--KLIVLWDNNGISIDGPISL---ADST-DQYARFRASGWN-TLS------VNGHDHHA-------ITSTLRKAQLS  246 (673)
Q Consensus       187 ~l~--nli~i~d~N~~si~~~~~~---~~~~-~~~~~~~a~Gw~-~~~------vdG~d~~~-------i~~a~~~ak~~  246 (673)
                      |++  |+.|+|||=.|.|.--+.+   ..++ -....++|+||. +..      |-|.+-+.       +..++++-|..
T Consensus       204 G~PTYNfAvvvDD~lM~IThViRGedHisNTPkQI~iy~Alg~~~iP~f~H~p~I~~~~gKKLSKRdg~~~~si~q~~~~  283 (513)
T TIGR00464       204 GSPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYKALGWKRIPTFAHLPLILNEDGKKLSKRDGKTATSIEQFKEQ  283 (513)
T ss_pred             CCCCCCEEEEEECCCCCCCEEEECCHHHCCCHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEECCCCHHHHHHHHHHHC
T ss_conf             88642506788533255451441202006718999999970889888155353585698840012064025768999866


Q ss_pred             C-CCHHH-HHCCCCCCCCC
Q ss_conf             2-21022-20133455570
Q gi|254780655|r  247 D-KPTMI-ACETVIGFGSP  263 (673)
Q Consensus       247 ~-kP~~I-~~~T~kG~G~~  263 (673)
                      + =|-.| -.-+..||..+
T Consensus       284 GyLPEAl~Nyl~lLGW~~~  302 (513)
T TIGR00464       284 GYLPEALINYLALLGWSPP  302 (513)
T ss_pred             CCCHHHHHHHHHHHCCCCC
T ss_conf             8877899999998468965


No 357
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=25.98  E-value=34  Score=13.27  Aligned_cols=26  Identities=12%  Similarity=0.193  Sum_probs=22.3

Q ss_pred             HHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             98864144444444440678888888
Q gi|254780655|r  216 ARFRASGWNTLSVNGHDHHAITSTLR  241 (673)
Q Consensus       216 ~~~~a~Gw~~~~vdG~d~~~i~~a~~  241 (673)
                      .-|+.+||+|.-||++|.+++.++++
T Consensus       120 ~tl~~~Gi~v~fvd~~d~~~~~~aI~  145 (426)
T COG2873         120 HTLKRLGIEVRFVDPDDPENFEAAID  145 (426)
T ss_pred             HHHHHCCCEEEEECCCCHHHHHHHHC
T ss_conf             88886481799927999899998738


No 358
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=25.96  E-value=37  Score=12.95  Aligned_cols=27  Identities=15%  Similarity=0.343  Sum_probs=15.1

Q ss_pred             CCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             972999952688999999999999739943998574
Q gi|254780655|r  558 NAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVP  593 (673)
Q Consensus       558 ~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~  593 (673)
                      .++++-++.-         -++++++|+++++...+
T Consensus       355 ~PeiA~VGlt---------e~ea~~~~~~~~~~~~~  381 (467)
T PRK07845        355 RPEIATVGVS---------QAAIDSGEVPARTVMLP  381 (467)
T ss_pred             CCCEEEEECC---------HHHHHHCCCCEEEEEEE
T ss_conf             7433400388---------99998779976999997


No 359
>TIGR00075 hypD hydrogenase expression/formation protein HypD; InterPro: IPR002780   HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes . This protein has been found in Gram-negative and Gram-positive bacteria and Archaea. HypD contains many possible metal binding residues, which may bind to nickel. Transposon Tn5 insertions into HypD resulted in Rhizobium leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas .; GO: 0046872 metal ion binding.
Probab=25.74  E-value=38  Score=12.92  Aligned_cols=40  Identities=13%  Similarity=-0.001  Sum_probs=29.7

Q ss_pred             EEEEEECCC-CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf             599984362-114344557887652202233069996276322
Q gi|254780655|r  161 YTYVLVGDG-CLMEGISQEAISFAGHLGLSKLIVLWDNNGISI  202 (673)
Q Consensus       161 ~v~~iiGDG-~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si  202 (673)
                      |=++++|=| |.|-.++-=.|..+-..+.+|+-++.  |++.+
T Consensus       145 r~VVf~aiGFETTaP~TA~~L~~~k~~~v~NF~~l~--~H~~~  185 (384)
T TIGR00075       145 RKVVFFAIGFETTAPTTAITLLSAKAEDVNNFYVLS--AHRLV  185 (384)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEE--CCCCH
T ss_conf             947999615512614699999735557765034432--11221


No 360
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=25.57  E-value=38  Score=12.90  Aligned_cols=72  Identities=18%  Similarity=0.203  Sum_probs=47.5

Q ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf             45999843621143445578876522022330699962763223223556782179988641444444444406788888
Q gi|254780655|r  160 HYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTLSVNGHDHHAITST  239 (673)
Q Consensus       160 ~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~Gw~~~~vdG~d~~~i~~a  239 (673)
                      ..|++--.||----|++|-|-.+    ++.-.|++-. +           .+..-....+++|=+|+.++++--+++..|
T Consensus       113 ~~t~vtATdGNHG~~VA~aA~~l----G~ka~I~mp~-~-----------~~~~k~~air~~GAeVv~~~~~YDdav~~A  176 (396)
T TIGR03528       113 DITFVTATDGNHGRGVAWAANQL----GQKSVVYMPK-G-----------SAQIRLENIRAEGAECTITDLNYDDAVRLA  176 (396)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC----CCCEEEEECC-C-----------CCHHHHHHHHHCCCEEEEECCCHHHHHHHH
T ss_conf             80899807871899999999985----9988999179-9-----------999999999975998999789779999999


Q ss_pred             HHHHHHCC
Q ss_conf             88751102
Q gi|254780655|r  240 LRKAQLSD  247 (673)
Q Consensus       240 ~~~ak~~~  247 (673)
                      .+.|++.+
T Consensus       177 ~~~A~e~g  184 (396)
T TIGR03528       177 WKMAQENG  184 (396)
T ss_pred             HHHHHHCC
T ss_conf             99998659


No 361
>TIGR00065 ftsZ cell division protein FtsZ; InterPro: IPR000158   In bacteria, FtsZ , ,  is an essential cell division protein which appears to be involved in the initiation of this event. It assembles into a cytokinetic ring on the inner surface of the cytoplasmic membrane at the place where division will occur. The ring serves as a scaffold that is disassembled when septation is completed. FtsZ ring formation is initiated at a single site on one side of the bacterium and appears to grow bidirectionally. In Escherichia coli, MinCD IPR005526 from INTERPRO, encoded by the MinB locus, form a complex which appears to block the formation of FtsZ rings at the cell poles, at the ancient mid cell division sites, whilst MinE, encoded at the same locus, specifically prevents the action of MinCD at mid cell.    FtsZ is a GTP binding protein PDOC00199 from PROSITEDOC with a GTPase activity. It undergoes GTP-dependent polymerization into filaments (or tubules) that seem to form a cytoskeleton involved in septum synthesis. The structure and the properties of FtsZ clearly provide it with the capacity for the cytoskeletal, perhaps motor role, necessary for "contraction" along the division plane. In addition, however, the FtsZ ring structure provides the framework for the recruitment or assembly of the ten or so membrane and cytoplasmic proteins, uniquely required for cell division in E. coli or Bacillus subtilis, some of which are required for biogenesis of the new hemispherical poles of the two daughter cells. FtsZ can polymerize into various structures, for example a single linear polymer of FtsZ monomers, called a protofilament. Protofilaments can associate laterally to form pairs (sometimes called thick filaments, bundles (ill-defined linear associations of multiple protofilaments or thick filaments, sheets (parallel or anti-parallel two-dimensional associations of thick filaments and tubes (anti-parallel associations of thick filaments in a circular fashion to form a tubular structure). In addition, small circles of FtsZ monomers (a short protofilament bent around to join itself, apparently head to tail) have been observed and termed mini-rings.    FtsZ is a protein of about 400 residues which is well conserved across bacterial species and which is also present in the chloroplast of plants  as well as in archaebacteria . FtsZ shows structural similarity with eukaryotic tubulins. This similarity is probably both evolutionary and functionally significant.; GO: 0005525 GTP binding, 0005737 cytoplasm.
Probab=25.51  E-value=38  Score=12.89  Aligned_cols=15  Identities=27%  Similarity=0.452  Sum_probs=8.1

Q ss_pred             CCHHHHHCCCCCCCC
Q ss_conf             210222013345557
Q gi|254780655|r  248 KPTMIACETVIGFGS  262 (673)
Q Consensus       248 kP~~I~~~T~kG~G~  262 (673)
                      +=.+|=.++.+|-|.
T Consensus        68 ~kilIG~~~TrGLGA   82 (365)
T TIGR00065        68 KKILIGKKLTRGLGA   82 (365)
T ss_pred             CEEEECCCCCCCCCC
T ss_conf             135615733556767


No 362
>PRK05693 short chain dehydrogenase; Provisional
Probab=25.49  E-value=38  Score=12.89  Aligned_cols=29  Identities=7%  Similarity=0.139  Sum_probs=12.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHH-CCCCHHHH
Q ss_conf             444444406788888887511-02210222
Q gi|254780655|r  225 TLSVNGHDHHAITSTLRKAQL-SDKPTMIA  253 (673)
Q Consensus       225 ~~~vdG~d~~~i~~a~~~ak~-~~kP~~I~  253 (673)
                      .+.+|=.|.+++.++.++... .++.-+++
T Consensus        48 ~~~~Dvtd~~~i~~~~~~~~~~~g~iDiLV   77 (274)
T PRK05693         48 AVQLDVNDGAALARLAEELEAEHQGLDVLI   77 (274)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             899846998999999999999729976899


No 363
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=25.32  E-value=38  Score=12.87  Aligned_cols=27  Identities=19%  Similarity=0.201  Sum_probs=15.5

Q ss_pred             CCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             972999952688999999999999739943998574
Q gi|254780655|r  558 NAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVP  593 (673)
Q Consensus       558 ~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~  593 (673)
                      .++++-++.-         .++++++|++..+...+
T Consensus       354 ~PeiA~VGlt---------e~ea~~~g~~~~~~~~~  380 (466)
T PRK06115        354 RPEVASVGKT---------EEQLKAEGRAYKVGKFP  380 (466)
T ss_pred             CCCEEEEECC---------HHHHHHCCCCEEEEEEE
T ss_conf             6867988898---------99998769988999998


No 364
>PRK03719 ecotin precursor; Provisional
Probab=25.27  E-value=38  Score=12.92  Aligned_cols=31  Identities=16%  Similarity=0.243  Sum_probs=21.3

Q ss_pred             EEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             99962763223223556782179988641444444444
Q gi|254780655|r  193 VLWDNNGISIDGPISLADSTDQYARFRASGWNTLSVNG  230 (673)
Q Consensus       193 ~i~d~N~~si~~~~~~~~~~~~~~~~~a~Gw~~~~vdG  230 (673)
                      +.+|||...+.|..+..       .++++|+++..+++
T Consensus        72 ~~vDCN~~~l~G~Le~~-------tl~GWGY~YY~v~~  102 (167)
T PRK03719         72 LEVDCNQHRLGGELEEK-------TLEGWGYDYYVVDK  102 (167)
T ss_pred             EEEECCCCCCCCCCEEE-------ECCCCCCEEEEECC
T ss_conf             99963673116721470-------00467712599715


No 365
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=25.20  E-value=38  Score=12.86  Aligned_cols=30  Identities=27%  Similarity=0.334  Sum_probs=23.4

Q ss_pred             HHHHHHHHHCCCEEECCCCCCCCCCCCCHHH
Q ss_conf             2454111100001302454333333331010
Q gi|254780655|r  454 AIRLASLMGIRVIHVLTHDSIGLGEDGPTHQ  484 (673)
Q Consensus       454 ~ir~~al~~~~v~~v~th~gi~~G~DGpTHq  484 (673)
                      +-|..|+|+-.++|-++ +++.++++|-.||
T Consensus        89 ~rrV~aiQ~g~~If~~~-ASF~~~e~g~eHq  118 (289)
T COG1946          89 TRRVDAIQHGKLIFSAT-ASFQVPEEGFEHQ  118 (289)
T ss_pred             EEEEEEEECCEEEEEEE-EECCCCCCCCHHH
T ss_conf             67999998999999987-0006799982154


No 366
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=24.95  E-value=39  Score=12.82  Aligned_cols=66  Identities=12%  Similarity=0.052  Sum_probs=36.5

Q ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC---CCCCCCCC---CCHHHHHHHCCCCCCCC
Q ss_conf             5999843621143445578876522022330699962763223---22355678---21799886414444444
Q gi|254780655|r  161 YTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISID---GPISLADS---TDQYARFRASGWNTLSV  228 (673)
Q Consensus       161 ~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~---~~~~~~~~---~~~~~~~~a~Gw~~~~v  228 (673)
                      ++-++||=+|-.  .+.-+..+|++|+++-+-+-..+..++--   ...-...+   .-+...++.|+|..+.+
T Consensus        66 ~~~afiGP~~p~--~c~~~a~la~~wn~Pl~s~~c~~~~~~~k~~ypt~~rt~p~~~~vl~~il~~F~W~~vai  137 (382)
T cd06371          66 YASAFVGPVNPG--YCEAAALLAKEWDKALFSWGCVNYELDDVRSYPTFARTLPSPSRVLFTVLRYFRWAHVAI  137 (382)
T ss_pred             CCCEEECCCCCC--HHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf             771798899952--213999998655985225656762335544565756677766999999998769808999


No 367
>TIGR01835 HMG-CoA-S_prok hydroxymethylglutaryl-CoA synthase; InterPro: IPR011554   Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase.    Hydroxymethylglutaryl-CoA synthase (2.3.3.10 from EC) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA .   HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria . In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi . In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes , .   This entry represents HMG-CoA synthase enzymes found in a limited spectrum of mostly Gram-positive bacteria, which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway..
Probab=24.81  E-value=39  Score=12.81  Aligned_cols=74  Identities=19%  Similarity=0.241  Sum_probs=48.8

Q ss_pred             C-CEEEEEECC---------CCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC
Q ss_conf             8-459998436---------211434455788765220223306999627632232235567821799886414444444
Q gi|254780655|r  159 D-HYTYVLVGD---------GCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTLSV  228 (673)
Q Consensus       159 d-~~v~~iiGD---------G~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~Gw~~~~v  228 (673)
                      | .||.||-.|         ||-|.|-.-=||.....   ++|.-|..+|.        +.+++|+...||=.+-.+-.|
T Consensus       143 ~s~kVLViaSDiAkY~~~t~GE~TQGAGAVA~Li~~d---P~~l~i~~~~~--------G~~T~DimDFWRP~y~~~a~V  211 (412)
T TIGR01835       143 NSRKVLVIASDIAKYGLETPGEATQGAGAVAMLISAD---PKLLAINEDSV--------GLYTDDIMDFWRPNYSTTALV  211 (412)
T ss_pred             CCCEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHCC---CHHHHCCCCCC--------CEECCCCCCCCCCCCCCCCEE
T ss_conf             8660168886311227798988616689999987418---01200158765--------312133121217898855316


Q ss_pred             CCC-CHHHHHHHHHHH
Q ss_conf             444-067888888875
Q gi|254780655|r  229 NGH-DHHAITSTLRKA  243 (673)
Q Consensus       229 dG~-d~~~i~~a~~~a  243 (673)
                      ||. -.+.-.+|+++|
T Consensus       212 dG~~S~~~Yl~a~~~a  227 (412)
T TIGR01835       212 DGQYSTEQYLNALEEA  227 (412)
T ss_pred             CCCHHHHHHHHHHHHH
T ss_conf             4604688999999999


No 368
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=24.77  E-value=39  Score=12.80  Aligned_cols=92  Identities=18%  Similarity=0.291  Sum_probs=47.2

Q ss_pred             HHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEE----EECCHH
Q ss_conf             1012211211201245777765202567834999524444334566553221234737998569972999----952688
Q gi|254780655|r  494 AIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTPNAQVTI----FSSGSE  569 (673)
Q Consensus       494 ~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~~~dv~i----ia~G~~  569 (673)
                      .++|+.|+.| |..-++.+-..|-.-.+.|.++..-|...+..     .......|  .+   +|.+++|    |.+|. 
T Consensus       177 ~~~~~vVVsP-D~G~~krA~~~A~~L~~~~~a~~~K~R~~~~~-----~~~~~~vG--dV---~Gr~~IIVDDiIdTGg-  244 (331)
T PRK02812        177 NLEDIVVVSP-DVGGVARARAFAKKLNDAPLAIIDKRRQAHNV-----AEVLNVIG--DV---KGKTAILVDDMIDTGG-  244 (331)
T ss_pred             CCCCCEEECC-CCCHHHHHHHHHHHCCCCCEEEEECCCCCCCC-----CEECCCCC--CC---CCCEEEEECCHHHHHH-
T ss_conf             8887179747-94089999999997279958999424578884-----21024445--54---5651899621442279-


Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCCHHCC
Q ss_conf             9999999999997399439985746581000
Q gi|254780655|r  570 LKIAVEACEILSSRNISTRVVSVPCFELFFE  600 (673)
Q Consensus       570 v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~  600 (673)
                        ...+|++.|+++|-. +|+-+.+--.|-.
T Consensus       245 --Tl~~aa~~Lk~~GA~-~V~a~aTHgvfsg  272 (331)
T PRK02812        245 --TICEGARLLRKEGAK-RVYACATHAVFSP  272 (331)
T ss_pred             --HHHHHHHHHHHCCCC-EEEEEEECCCCCH
T ss_conf             --999999999857998-7899998965587


No 369
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=24.74  E-value=39  Score=12.80  Aligned_cols=14  Identities=7%  Similarity=0.126  Sum_probs=8.2

Q ss_pred             HHHHCCCCEEEEEC
Q ss_conf             99973994399857
Q gi|254780655|r  579 ILSSRNISTRVVSV  592 (673)
Q Consensus       579 ~L~~~Gi~~~Vi~~  592 (673)
                      +++++|+++.+...
T Consensus       375 ~a~~~g~~~~~~~~  388 (475)
T PRK06327        375 QLKAEGVEYKAGKF  388 (475)
T ss_pred             HHHHCCCCEEEEEE
T ss_conf             99876998899999


No 370
>PRK07804 L-aspartate oxidase; Provisional
Probab=24.69  E-value=39  Score=12.79  Aligned_cols=16  Identities=31%  Similarity=0.544  Sum_probs=8.0

Q ss_pred             CEEEEEECCCCCCCHH
Q ss_conf             4599984362114344
Q gi|254780655|r  160 HYTYVLVGDGCLMEGI  175 (673)
Q Consensus       160 ~~v~~iiGDG~l~eG~  175 (673)
                      +.+.-++-||..-.|.
T Consensus       163 ~~~~~ll~d~~~v~gv  178 (533)
T PRK07804        163 HVALDLLHDGRAVTGV  178 (533)
T ss_pred             EEEEEEEECCCEEEEE
T ss_conf             6999998069989999


No 371
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=24.66  E-value=39  Score=12.79  Aligned_cols=25  Identities=24%  Similarity=0.206  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             8999999999999739943998574
Q gi|254780655|r  569 ELKIAVEACEILSSRNISTRVVSVP  593 (673)
Q Consensus       569 ~v~~al~aa~~L~~~Gi~~~Vi~~~  593 (673)
                      ...++++++..++..|+.+-|||.=
T Consensus       197 ~~~e~~~~a~~~~~~g~~~lvid~e  221 (261)
T COG1240         197 PKAETLEAASKLRLRGIQLLVIDTE  221 (261)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             5779999999985268847999557


No 372
>TIGR01326 OAH_OAS_sulfhy O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase; InterPro: IPR006235   This family of sequences is a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine sulfhydrylase (OAH, 2.5.1.49 from EC) and O-acetylserine sulfhydrylase (OAS, 2.5.1.47 from EC). An alternate name for OAH sulfhydrylase is homocysteine synthase.; GO: 0016765 transferase activity transferring alkyl or aryl (other than methyl) groups, 0006520 amino acid metabolic process.
Probab=24.31  E-value=35  Score=13.19  Aligned_cols=26  Identities=15%  Similarity=0.312  Sum_probs=22.7

Q ss_pred             HHHHHCCCCCCCCCCCC-HHHHHHHHH
Q ss_conf             98864144444444440-678888888
Q gi|254780655|r  216 ARFRASGWNTLSVNGHD-HHAITSTLR  241 (673)
Q Consensus       216 ~~~~a~Gw~~~~vdG~d-~~~i~~a~~  241 (673)
                      --|+-+|.+|.-||++| ++++.++++
T Consensus       115 ~TlkrlGIevrFvd~dd~pe~~~k~id  141 (434)
T TIGR01326       115 HTLKRLGIEVRFVDGDDDPEELEKAID  141 (434)
T ss_pred             HHHHHCCEEEEEECCCCCHHHHHHHCC
T ss_conf             955544814887278888789997606


No 373
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2).  eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits.  The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit.  Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome.  The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B.  eIF2B is a heteropentamer, and the epsilon chain binds eIF2.  Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma.  It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role.  eIF2-gamma is found only in eukaryotes and archaea.  It is closely related to SelB, the sel
Probab=24.23  E-value=40  Score=12.73  Aligned_cols=38  Identities=16%  Similarity=0.253  Sum_probs=25.9

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf             9998436211434455788765220223306999627632
Q gi|254780655|r  162 TYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGIS  201 (673)
Q Consensus       162 v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~s  201 (673)
                      +.+|=.+-...++++-|-+.++...++.++|+.+  |+|=
T Consensus       111 iLvVdA~eG~~~~QT~eH~~l~~~lgv~~iIV~v--NKmD  148 (203)
T cd01888         111 LLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQ--NKID  148 (203)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEE--ECCC
T ss_conf             8986436677507799999999984998636775--0777


No 374
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=24.18  E-value=36  Score=13.03  Aligned_cols=23  Identities=30%  Similarity=0.372  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf             78888888751102210222013
Q gi|254780655|r  234 HAITSTLRKAQLSDKPTMIACET  256 (673)
Q Consensus       234 ~~i~~a~~~ak~~~kP~~I~~~T  256 (673)
                      ....+++.+|+.++||.+++.+.
T Consensus        10 ~t~eegL~~ak~s~KPlMvIiH~   32 (130)
T cd02960          10 QTYEEGLYKAKKSNKPLMVIHHL   32 (130)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             66999999999729997999860


No 375
>TIGR02886 spore_II_AA anti-sigma F factor antagonist; InterPro: IPR014237   This represents the anti-sigma F factor antagonist, also known as stage II sporulation protein AA. This protein is universally conserved in the endospore-forming bacteria, all of which belong to the Firmcutes.; GO: 0045152 antisigma factor binding, 0006355 regulation of transcription DNA-dependent, 0030435 sporulation.
Probab=24.10  E-value=40  Score=12.71  Aligned_cols=70  Identities=20%  Similarity=0.212  Sum_probs=47.6

Q ss_pred             CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHH
Q ss_conf             01245777765202567834999524444334566553221234737998569972999952688999999999
Q gi|254780655|r  505 DSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACE  578 (673)
Q Consensus       505 d~~E~~~~~~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~~~dv~iia~G~~v~~al~aa~  578 (673)
                      .+++++..+..+++.. ...-|.+.=+++...   +...-.+.+|.|.-+.+.|..+++++.-+.|..+++-.-
T Consensus        22 ~aE~~R~~i~~~i~~~-~~~~~ilnL~~vtFM---DSSGlGVilGRYK~i~~~gG~v~v~~v~p~vkr~felSG   91 (106)
T TIGR02886        22 TAEEVRRKIDDAIERR-PIKHLILNLKNVTFM---DSSGLGVILGRYKKIKQEGGEVIVCNVSPAVKRVFELSG   91 (106)
T ss_pred             HHHHHHHHHHHHHHHC-CCCEEEEECCCCCEE---EECCCCEEEEEEEEEEECCCEEEEECCCCCCEEEEECCC
T ss_conf             7899999999898507-983689862776478---651221011103577306888989729931100011148


No 376
>PRK10060 RNase II stability modulator; Provisional
Probab=24.09  E-value=40  Score=12.71  Aligned_cols=90  Identities=19%  Similarity=0.194  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHCCCCEEE-EECCCCCHHCCCCHHHHHHHCC-----CCCEEEEECCC-C---HHH---HHHHHCCCCC
Q ss_conf             99999999999973994399-8574658100086889996436-----79779997286-0---278---9998457981
Q gi|254780655|r  570 LKIAVEACEILSSRNISTRV-VSVPCFELFFEQSDSYRAQIIG-----SSPIKIAIEAG-L---RQG---WDAFIGSDGS  636 (673)
Q Consensus       570 v~~al~aa~~L~~~Gi~~~V-i~~~s~k~ld~~~~~~~~~il~-----~~~~~vtiE~g-~---~~g---~~~~~~~~~~  636 (673)
                      +..|++....+.++|...+| ||++.....+..-...+.+++.     .....+-|.+. +   ...   .-+-+...|.
T Consensus       476 l~~A~~q~~~w~~~g~~~~vsVNlS~~ql~~~~f~~~l~~~L~~~~l~p~~L~lEITEs~l~~d~~~~~~~l~~Lr~lGv  555 (663)
T PRK10060        476 ILDVVRQAAKWRDKGINLRVAVNVSARQLADQTIFTALKQVLQELNFEYCPIDVELTESCLIENEELALSVIQQFSQLGA  555 (663)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEEECHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHCCHHHHHHHHHHHHHCCC
T ss_conf             99999999999866998648999178994883599999999998299824699998186122399999999999997899


Q ss_pred             EEEECCCCCCCCHHHHHHHCCCC
Q ss_conf             89835776768888999980999
Q gi|254780655|r  637 FIGMQGFGASGSCDLLYQHFGIN  659 (673)
Q Consensus       637 ~igid~Fg~sg~~~el~~~~Gld  659 (673)
                      .+++|+||.--+.=..++.+-+|
T Consensus       556 ~iALDDFGTGySSLsyL~~lPvd  578 (663)
T PRK10060        556 QVHLDDFGTGYSSLSQLARFPID  578 (663)
T ss_pred             EEEEECCCCCHHHHHHHHHCCCC
T ss_conf             89998999973369998428999


No 377
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=23.94  E-value=40  Score=12.69  Aligned_cols=31  Identities=13%  Similarity=0.202  Sum_probs=22.7

Q ss_pred             EEECCCCCEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf             9856997299995268899999999999973
Q gi|254780655|r  553 YISTPNAQVTIFSSGSELKIAVEACEILSSR  583 (673)
Q Consensus       553 ~~~~~~~dv~iia~G~~v~~al~aa~~L~~~  583 (673)
                      ++-+++.-+.++++|..+.+|.+.|..+.++
T Consensus       376 lvt~GgRvL~v~~~g~t~~eA~~~ay~~~~~  406 (428)
T COG0151         376 LVTSGGRVLAVVGTGDTLEEAQEKAYEALEK  406 (428)
T ss_pred             EEECCCEEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf             9964885899996589999999999999963


No 378
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family; InterPro: IPR005910   Histone acetylation is carried out by a class of enzymes known as histone acetyltransferases (HATs), which catalyse the transfer of an acetyl group from acetyl-CoA to the lysine E-amino groups on the N-terminal tails of histones . Early indication that HATs were involved in transcription came from the observation that in actively transcribed regions of chromatin, histones tend to be hyperacetylated, whereas in transcriptionally silent regions histones are hypoacetylated. The histone acetyltransferases are divided into five families. These include the Gcn5-related acetyltransferases (GNATs); the MYST (for 'MOZ, Ybf2/Sas3, Sas2 and Tip60)-related HATs; p300/CBP HATs; the general transcription factor HATs, which include the TFIID subunit TAF250; and the nuclear hormone-related HATs SRC1 and ACTR (SRC3). The GCN5-related N-acetyltransferase superfamily includes such enzymes as the histone acetyltransferases GCN5 and Hat1, the elongator complex subunit Elp3, the mediator-complex subunit Nut1, and Hpa2 .    Many GNATs share several functional domains, including an N-terminal region of variable length, an acetyltransferase domain that encompasses the conserved sequence motifs described above, a region that interacts with the coactivator Ada2, and a C-terminal bromodomain that is believed to interact with acetyl-lysine residues. Members of the GNAT family are important for the regulation of cell growth and development. In mice, knockouts of Gcn5L are embryonic lethal. Yeast Gcn5 is needed for normal progression through the G2M boundary and mitotic gene expression. The importance of GNATs is probably related to their role in transcription and DNA repair.   The yeast GCN5 (yGCN5) transcriptional coactivator functions as a histone acetyltransferase (HAT) to promote transcriptional activation. The crystal structure of the yeast histone acetyltransferase Hat1-acetyl coenzyme A (AcCoA) shows that Hat1 has an elongated, curved structure, and the AcCoA molecule is bound in a cleft on the concave surface of the protein, marking the active site of the enzyme. A channel of variable width and depth that runs across the protein is probably the binding site for the histone substrate . The central protein core associated with AcCoA binding that appears to be structurally conserved among a superfamily of N-acetyltransferases, including yeast histone acetyltransferase 1 and Serratia marcescens aminoglycoside 3-N-acetyltransferase .   The Saccharomyces cerevisiae member YPL086C has been characterised in vitro as an N-terminal acetyltransferase (2.3.1.48 from EC) for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases. In vivo, ELP3 gene deletion confers typical ELP phenotypes such as slow growth adaptation, slow gene activation, and temperature sensitivity. This suggests a role for the proteins as novel, tightly RNAPII-associated histone acetyltransferases in transcription of DNA packaged in chromatin ..
Probab=23.92  E-value=34  Score=13.20  Aligned_cols=28  Identities=21%  Similarity=0.241  Sum_probs=14.9

Q ss_pred             EEECCHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf             211201245777765202567834999524
Q gi|254780655|r  501 LRPADSIETLECWQVALKEKNRPSVLSLSR  530 (673)
Q Consensus       501 ~~P~d~~E~~~~~~~al~~~~gP~~ir~~R  530 (673)
                      |.|...+|+..++-.+..-  -|-.+|..|
T Consensus       358 Y~PY~~eEaveLiv~~~~~--~P~WvR~~R  385 (573)
T TIGR01211       358 YKPYTTEEAVELIVEIKKI--MPKWVRIQR  385 (573)
T ss_pred             CCCCCHHHHHHHHHHHHHH--CCCCEEEEE
T ss_conf             9877678999999999973--897357757


No 379
>pfam00731 AIRC AIR carboxylase. Members of this family catalyse the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyse the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.
Probab=23.76  E-value=41  Score=12.67  Aligned_cols=32  Identities=34%  Similarity=0.416  Sum_probs=20.5

Q ss_pred             EEEECCHHHHHHHHHHHHHHHCCCC--EEEEECC
Q ss_conf             9995268899999999999973994--3998574
Q gi|254780655|r  562 TIFSSGSELKIAVEACEILSSRNIS--TRVVSVP  593 (673)
Q Consensus       562 ~iia~G~~v~~al~aa~~L~~~Gi~--~~Vi~~~  593 (673)
                      +|.++-+-...+.++++.|++-||.  ++|+|.+
T Consensus         5 IimGS~SD~~~~~~a~~~L~~~gi~~e~~V~SAH   38 (150)
T pfam00731         5 IIMGSDSDLPTMEKAAKVLKEFGIPYEVRVVSAH   38 (150)
T ss_pred             EEECCHHHHHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf             9957673099999999999985997698676510


No 380
>pfam04395 Poxvirus_B22R Poxvirus B22R protein.
Probab=23.70  E-value=41  Score=12.66  Aligned_cols=12  Identities=17%  Similarity=0.160  Sum_probs=6.0

Q ss_pred             HHHHHHHHHCCC
Q ss_conf             332125663487
Q gi|254780655|r  279 EEIKATRKALNW  290 (673)
Q Consensus       279 ee~~~~~k~lg~  290 (673)
                      +.+...++.||.
T Consensus       377 ~l~~~~~~~LG~  388 (977)
T pfam04395       377 DLVLRLKKELGA  388 (977)
T ss_pred             HHHHHHHHHCCC
T ss_conf             399999998089


No 381
>COG0409 HypD Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=23.56  E-value=41  Score=12.64  Aligned_cols=31  Identities=19%  Similarity=0.163  Sum_probs=13.2

Q ss_pred             EEECCC-CCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             984362-1143445578876522022330699
Q gi|254780655|r  164 VLVGDG-CLMEGISQEAISFAGHLGLSKLIVL  194 (673)
Q Consensus       164 ~iiGDG-~l~eG~~~EAl~~A~~~~l~nli~i  194 (673)
                      ++++=| |.+..+..-.+..+...+++|+-++
T Consensus       136 VffaiGFETT~P~TA~~l~~~~~e~i~Nf~~l  167 (364)
T COG0409         136 VFFAIGFETTTPTTACMLLSAKGEGIENFFVL  167 (364)
T ss_pred             EEEECCCCCCCCCHHHHHHHCCCCCCCEEEEE
T ss_conf             99957511589734788873444565347999


No 382
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=23.52  E-value=41  Score=12.64  Aligned_cols=26  Identities=27%  Similarity=0.571  Sum_probs=14.9

Q ss_pred             EEEECCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             999526889999999999997399439
Q gi|254780655|r  562 TIFSSGSELKIAVEACEILSSRNISTR  588 (673)
Q Consensus       562 ~iia~G~~v~~al~aa~~L~~~Gi~~~  588 (673)
                      .++++|++.-.. .+++.+++.++.+.
T Consensus       181 ~v~~cGP~~Mmk-~v~~~~~~~~~~~~  206 (248)
T PRK00054        181 AIYSCGPEIMMK-KVVEILKEKKVRAY  206 (248)
T ss_pred             EEEEECCHHHHH-HHHHHHHHCCCCEE
T ss_conf             999969989999-99999875599599


No 383
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=23.50  E-value=41  Score=12.64  Aligned_cols=32  Identities=13%  Similarity=0.077  Sum_probs=22.4

Q ss_pred             EEEEECCHHHHHHHH-HHHHHHHCCCCEEEEEC
Q ss_conf             999952688999999-99999973994399857
Q gi|254780655|r  561 VTIFSSGSELKIAVE-ACEILSSRNISTRVVSV  592 (673)
Q Consensus       561 v~iia~G~~v~~al~-aa~~L~~~Gi~~~Vi~~  592 (673)
                      ..+|++-.+.+..++ |.++|+++|.+.=|.|-
T Consensus       389 ~~~VGFAAETe~li~~A~~KL~~K~~D~IvaNd  421 (476)
T PRK13982        389 PLVIGFAAETEHLIDNARAKLARKGCDWIVAND  421 (476)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEC
T ss_conf             889998038683799999999972989999807


No 384
>TIGR01455 glmM phosphoglucosamine mutase; InterPro: IPR006352   This family describes GlmM, phosphoglucosamine mutase, also designated MrsA and YhbF in Escherichia coli , UreC in Helicobacter pylori , and femR315 or FemD in Staphlococcus aureus . It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides..
Probab=23.27  E-value=42  Score=12.60  Aligned_cols=51  Identities=27%  Similarity=0.262  Sum_probs=33.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC-CCCCCCHHHHHHHHHHHH
Q ss_conf             86314799999999999985342688767845999843-621143445578876522
Q gi|254780655|r  130 GPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVG-DGCLMEGISQEAISFAGH  185 (673)
Q Consensus       130 G~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiG-DG~l~eG~~~EAl~~A~~  185 (673)
                      .+|---+.+++|+|.++...+.+..++    .--|||| |-=++ |..+|+...||-
T Consensus        13 ~~lTae~al~LG~AaG~VL~~~~~~~~----~~~VviGkDTR~S-G~MlE~Al~AGL   64 (450)
T TIGR01455        13 EPLTAELALKLGAAAGRVLRRRGSRKS----APRVVIGKDTRLS-GYMLENALVAGL   64 (450)
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCCCC----CCEEEEECCCCCC-HHHHHHHHHHHH
T ss_conf             767889999998999999740688898----8568983378865-889999999867


No 385
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=23.20  E-value=42  Score=12.60  Aligned_cols=12  Identities=8%  Similarity=0.155  Sum_probs=5.7

Q ss_pred             HHCCCCEEEEEC
Q ss_conf             973994399857
Q gi|254780655|r  581 SSRNISTRVVSV  592 (673)
Q Consensus       581 ~~~Gi~~~Vi~~  592 (673)
                      +++|+++.|...
T Consensus       367 ~~~g~~~~~~~~  378 (472)
T PRK06467        367 KEEGIEYETATF  378 (472)
T ss_pred             HHCCCCEEEEEE
T ss_conf             876998899999


No 386
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=23.19  E-value=42  Score=12.59  Aligned_cols=177  Identities=16%  Similarity=0.145  Sum_probs=77.6

Q ss_pred             HHHHCCCEEE----CCCCCCCC---CCCCCHHHHC---CCCCHHHHHC----CCCEEEECCHH------HHHHHHHHHHC
Q ss_conf             1110000130----24543333---3333101000---2221011101----22112112012------45777765202
Q gi|254780655|r  459 SLMGIRVIHV----LTHDSIGL---GEDGPTHQPV---EHLAALRAIP----DLLVLRPADSI------ETLECWQVALK  518 (673)
Q Consensus       459 al~~~~v~~v----~th~gi~~---G~DGpTHq~i---edia~lr~iP----nl~v~~P~d~~------E~~~~~~~al~  518 (673)
                      ...+.|+.+-    ...++||+   -.||.|-..+   -|.||+++=-    +...|.|.=..      ++...++.|++
T Consensus       404 ~~l~eP~~~~~~~l~~sASIGIAlyP~DG~taE~LLRnADtAMY~AK~~GRN~~~FF~p~m~~~a~~RL~lE~dLr~ALe  483 (728)
T PRK11829        404 SQVTQPLFFDEITLRPSASIGITRYQAQQDTAESMMRNASTAMMAAHHEGRNQIMVFEPHLIEKTHKRLTQENDLLQAIE  483 (728)
T ss_pred             HHHCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98458843578734002689997589998899999997999999999838982897688899999999999999999983


Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCE----------------EEEECCH-HHHHHHHHHHHHH
Q ss_conf             5678349995244443345665532212347379985699729----------------9995268-8999999999999
Q gi|254780655|r  519 EKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTPNAQV----------------TIFSSGS-ELKIAVEACEILS  581 (673)
Q Consensus       519 ~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~~~dv----------------~iia~G~-~v~~al~aa~~L~  581 (673)
                      +.  -..+.|-    |..+....    -..|.=.++|=..++.                .|+..|. .+.+|.+....+.
T Consensus       484 ~~--EF~LyYQ----PqVdL~TG----~IvGaEALLRW~HP~~GlIsP~eFIPlAEetGLI~~Lg~WVLeqAcrqla~W~  553 (728)
T PRK11829        484 NH--DFTLFLQ----PQWDMKRQ----QVIGAEALLRWCQPDGSYVLPSGFVHFAEEEGMMVPLGNWVLEEACRILADWK  553 (728)
T ss_pred             CC--CEEEEEC----CEEECCCC----CEEEEEEEEEECCCCCCEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             69--8799966----50886899----99999999316599998388899999998489889999999999999999998


Q ss_pred             HCCCCEEE-EECCCCCHHCCCCHHHHHHHCCC-----CCEEEEECCCC-H----HH--HHHHHCCCCCEEEECCCCC
Q ss_conf             73994399-85746581000868899964367-----97799972860-2----78--9998457981898357767
Q gi|254780655|r  582 SRNISTRV-VSVPCFELFFEQSDSYRAQIIGS-----SPIKIAIEAGL-R----QG--WDAFIGSDGSFIGMQGFGA  645 (673)
Q Consensus       582 ~~Gi~~~V-i~~~s~k~ld~~~~~~~~~il~~-----~~~~vtiE~g~-~----~g--~~~~~~~~~~~igid~Fg~  645 (673)
                      ++|.+..| ||++.....+..-.+....++..     ....+-|.++. -    ..  .-+-+...|..+.+|+||-
T Consensus       554 ~~G~~l~VSVNLSa~QL~~~~fv~~l~~iL~~~glpP~~LeLEITEs~lm~d~e~a~~~L~~Lr~lGV~IALDDFGT  630 (728)
T PRK11829        554 ARGVSLPLSVNISGLQVQNKQFLPHLKTLISHYHIDPQQLLLEITETAQIQDLDEALRLLRELQGLGLLIALDDFGI  630 (728)
T ss_pred             HCCCCCEEEEEECHHHHCCCCHHHHHHHHHHHHCCCHHHEEEECCCCCHHCCHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             64999769999599991998399999999998695845399980799122299999999999997899899969887


No 387
>PRK07236 hypothetical protein; Provisional
Probab=23.06  E-value=42  Score=12.58  Aligned_cols=22  Identities=14%  Similarity=0.021  Sum_probs=11.5

Q ss_pred             EEEEECCHHHHHHHHHHHHHHH
Q ss_conf             9999526889999999999997
Q gi|254780655|r  561 VTIFSSGSELKIAVEACEILSS  582 (673)
Q Consensus       561 v~iia~G~~v~~al~aa~~L~~  582 (673)
                      ...=..|.....|++=|-.|.+
T Consensus       316 ~m~P~~GQGan~AieDA~~La~  337 (386)
T PRK07236        316 VARPHTAMGVAKAAGDAVALAE  337 (386)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHH
T ss_conf             5798510368999999999999


No 388
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level HMM (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=23.01  E-value=42  Score=12.57  Aligned_cols=11  Identities=9%  Similarity=-0.127  Sum_probs=4.4

Q ss_pred             HHHHCCCCCCC
Q ss_conf             88641444444
Q gi|254780655|r  217 RFRASGWNTLS  227 (673)
Q Consensus       217 ~~~a~Gw~~~~  227 (673)
                      -.+.+|.++..
T Consensus        92 ~a~~~g~~~~~  102 (355)
T TIGR03301        92 ICEYLGIPHTD  102 (355)
T ss_pred             HHHHHCCCEEE
T ss_conf             99982996699


No 389
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=22.88  E-value=42  Score=12.55  Aligned_cols=15  Identities=27%  Similarity=0.461  Sum_probs=6.4

Q ss_pred             CHHHHHHHHHHHHHH
Q ss_conf             688999999999999
Q gi|254780655|r  567 GSELKIAVEACEILS  581 (673)
Q Consensus       567 G~~v~~al~aa~~L~  581 (673)
                      |..++.+++=+..|.
T Consensus       295 gQG~nlg~~Da~~La  309 (387)
T COG0654         295 GQGANLALEDAAALA  309 (387)
T ss_pred             CHHHHHHHHHHHHHH
T ss_conf             045767798999999


No 390
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit; InterPro: IPR006394   These sequences represent the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation. ; GO: 0016866 intramolecular transferase activity, 0019670 anaerobic glutamate catabolic process.
Probab=22.81  E-value=42  Score=12.54  Aligned_cols=71  Identities=23%  Similarity=0.306  Sum_probs=47.5

Q ss_pred             EEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             9843621143445578876522022330699962763223223556782179988641444444444406788888887
Q gi|254780655|r  164 VLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTLSVNGHDHHAITSTLRK  242 (673)
Q Consensus       164 ~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~  242 (673)
                      -+-|-|+...==..|-+.-||   |+.+.+.+=-|-     -+....-+++.+||+.+||+=.---+|+++...+++++
T Consensus        60 SlYGhg~~DC~Glr~~c~eaG---l~~illYVGGNl-----vVGk~df~dV~~rFkeMGfDRVfap~t~~E~v~~~~k~  130 (134)
T TIGR01501        60 SLYGHGEIDCAGLRDKCAEAG---LDAILLYVGGNL-----VVGKTDFEDVEKRFKEMGFDRVFAPQTDLEAVVDALKK  130 (134)
T ss_pred             CCCCCCCCCHHHHHHHHHHCC---CCCEEEEECCEE-----EECCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHH
T ss_conf             020780001245789998658---882799876766-----55776736788887645873323698582278999987


No 391
>PRK13748 putative mercuric reductase; Provisional
Probab=22.76  E-value=42  Score=12.54  Aligned_cols=32  Identities=19%  Similarity=0.237  Sum_probs=18.6

Q ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             59998436211434455788765220223306999627
Q gi|254780655|r  161 YTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNN  198 (673)
Q Consensus       161 ~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N  198 (673)
                      |=++|||=|.    -.+.|...|+.+++.  +.+++.+
T Consensus        99 yDliVIG~Gp----aG~~AA~~Aa~~G~k--ValVE~~  130 (561)
T PRK13748         99 LHVAVIGSGG----AAMAAALKAVEQGAR--VTLIERG  130 (561)
T ss_pred             CCEEEECCCH----HHHHHHHHHHHCCCE--EEEEECC
T ss_conf             7689989588----999999999978997--9999479


No 392
>COG0260 PepB Leucyl aminopeptidase [Amino acid transport and metabolism]
Probab=22.75  E-value=42  Score=12.54  Aligned_cols=35  Identities=23%  Similarity=0.254  Sum_probs=15.1

Q ss_pred             EEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCC
Q ss_conf             995268899999999999973994399857465810008
Q gi|254780655|r  563 IFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQ  601 (673)
Q Consensus       563 iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~  601 (673)
                      +.+.-..+...+..|.+=    ..=.++-||-.++++++
T Consensus       378 ~fs~dd~La~~l~~As~~----~gE~~WrLPl~~~y~~~  412 (485)
T COG0260         378 LFSNDDELANQLLAASEE----TGEPLWRLPLHEEYRKQ  412 (485)
T ss_pred             CCCCCHHHHHHHHHHHHH----CCCCCCCCCCCHHHHHH
T ss_conf             332899999999999987----19832058798788964


No 393
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=22.62  E-value=43  Score=12.52  Aligned_cols=23  Identities=30%  Similarity=0.345  Sum_probs=13.2

Q ss_pred             EEEEECCHHHHHHHHHHHHHHHC
Q ss_conf             99995268899999999999973
Q gi|254780655|r  561 VTIFSSGSELKIAVEACEILSSR  583 (673)
Q Consensus       561 v~iia~G~~v~~al~aa~~L~~~  583 (673)
                      +-|+=+...+..|++--+.|+++
T Consensus       498 ~gi~R~~~~L~~al~~l~~l~~~  520 (631)
T PRK07803        498 VGIIRKEDEISQALEKLAELKER  520 (631)
T ss_pred             CCEEECHHHHHHHHHHHHHHHHH
T ss_conf             88898789999999999999999


No 394
>TIGR02053 MerA mercuric reductase; InterPro: IPR011796    This entry represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH .; GO: 0016152 mercury (II) reductase activity, 0045340 mercury ion binding, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport, 0050787 detoxification of mercury ion.
Probab=22.57  E-value=43  Score=12.51  Aligned_cols=37  Identities=16%  Similarity=0.232  Sum_probs=16.6

Q ss_pred             CCEEEECCCCCCC----CHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             8189835776768----888999980999899999999984
Q gi|254780655|r  635 GSFIGMQGFGASG----SCDLLYQHFGINAIAIVDMVERKL  671 (673)
Q Consensus       635 ~~~igid~Fg~sg----~~~el~~~~Gld~~~I~~~i~~~L  671 (673)
                      ++++|+.=+.+.+    ...-+-=++|||.+.|.+++--++
T Consensus       429 GkilGv~~vA~~A~e~I~~A~~ai~~GlTVdD~idt~h~fp  469 (494)
T TIGR02053       429 GKILGVQVVAEEAAEVINEAALAIKAGLTVDDLIDTLHPFP  469 (494)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCC
T ss_conf             42778775231178899999999980783778873115456


No 395
>TIGR02023 BchP-ChlP geranylgeranyl reductase; InterPro: IPR010253   This entry represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll . It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).; GO: 0045550 geranylgeranyl reductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=22.46  E-value=43  Score=12.50  Aligned_cols=43  Identities=21%  Similarity=0.209  Sum_probs=27.7

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             99843621143445578876522022330699962763223223556782
Q gi|254780655|r  163 YVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADST  212 (673)
Q Consensus       163 ~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~  212 (673)
                      ++||| |.-.++.+-|-|.-+|.     =+++++-|-..+ .|+++..+-
T Consensus         3 V~viG-GGPsGA~AAe~LA~~G~-----~tiLlER~l~~~-KPCGGAIPp   45 (408)
T TIGR02023         3 VAVIG-GGPSGAAAAETLARAGI-----ETILLERALSRI-KPCGGAIPP   45 (408)
T ss_pred             EEEEE-CCCCHHHHHHHHHHCCC-----EEEEEEHHHCCC-CCCCCCCCH
T ss_conf             78981-68506899999986497-----488630243265-888886651


No 396
>PRK05568 flavodoxin; Provisional
Probab=22.38  E-value=43  Score=12.48  Aligned_cols=26  Identities=15%  Similarity=0.211  Sum_probs=9.3

Q ss_pred             CHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             68899999999999973994399857
Q gi|254780655|r  567 GSELKIAVEACEILSSRNISTRVVSV  592 (673)
Q Consensus       567 G~~v~~al~aa~~L~~~Gi~~~Vi~~  592 (673)
                      |++-..|-..++-|++.|+++++.++
T Consensus        13 GnTe~mA~~Iaegl~~~Gv~V~~~~~   38 (142)
T PRK05568         13 GNTEAMANLIAEGAKENGLEVKLLNV   38 (142)
T ss_pred             CHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             54999999999999866983999980


No 397
>cd04169 RF3 RF3 subfamily.  Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria.  Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide.  The class II release factor RF3 then initiates the release of the class I RF from the ribosome.  RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state.  GDP/GTP exchange occurs, followed by the release of the class I RF.  Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome.  RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=22.37  E-value=43  Score=12.48  Aligned_cols=35  Identities=9%  Similarity=0.129  Sum_probs=14.8

Q ss_pred             CCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             845999843621143445578876522022330699
Q gi|254780655|r  159 DHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVL  194 (673)
Q Consensus       159 d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i  194 (673)
                      |.-|+++-+....+-+ +--+..+|-.++++.+++|
T Consensus        96 D~AviVv~a~~GVe~~-T~~~w~~a~~~~iP~iifI  130 (267)
T cd04169          96 DSAVMVIDAAKGVEPQ-TRKLFEVCRLRGIPIITFI  130 (267)
T ss_pred             HCEEEEEECCCCCCHH-HHHHHHHHHHCCCCEEEEE
T ss_conf             4547995256665355-8999999997299979998


No 398
>KOG0460 consensus
Probab=22.27  E-value=43  Score=12.47  Aligned_cols=38  Identities=21%  Similarity=0.440  Sum_probs=30.3

Q ss_pred             CCCEEEEEEC-CCCCCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             7845999843-621143445578876522022330699962
Q gi|254780655|r  158 IDHYTYVLVG-DGCLMEGISQEAISFAGHLGLSKLIVLWDN  197 (673)
Q Consensus       158 ~d~~v~~iiG-DG~l~eG~~~EAl~~A~~~~l~nli~i~d~  197 (673)
                      .|.-+.++-+ ||-|.  +.-|-+.+|-.-+.+++++++|-
T Consensus       141 MDGaILVVaatDG~MP--QTrEHlLLArQVGV~~ivvfiNK  179 (449)
T KOG0460         141 MDGAILVVAATDGPMP--QTREHLLLARQVGVKHIVVFINK  179 (449)
T ss_pred             CCCEEEEEECCCCCCC--CHHHHHHHHHHCCCCEEEEEEEC
T ss_conf             6734999974789884--06888888987287649999712


No 399
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=22.26  E-value=32  Score=13.39  Aligned_cols=19  Identities=26%  Similarity=0.438  Sum_probs=14.9

Q ss_pred             HHHHHHHHCCCCHHHHHCC
Q ss_conf             8888751102210222013
Q gi|254780655|r  238 STLRKAQLSDKPTMIACET  256 (673)
Q Consensus       238 ~a~~~ak~~~kP~~I~~~T  256 (673)
                      +|+++||+.+||.+|.+.+
T Consensus         6 eal~~Ak~e~KpIflsig~   24 (124)
T cd02955           6 EAFEKARREDKPIFLSIGY   24 (124)
T ss_pred             HHHHHHHHCCCCEEEEEEC
T ss_conf             9999999729988999746


No 400
>PRK08246 threonine dehydratase; Provisional
Probab=22.22  E-value=43  Score=12.46  Aligned_cols=27  Identities=15%  Similarity=0.183  Sum_probs=15.8

Q ss_pred             HHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf             799886414444444444067888888
Q gi|254780655|r  214 QYARFRASGWNTLSVNGHDHHAITSTL  240 (673)
Q Consensus       214 ~~~~~~a~Gw~~~~vdG~d~~~i~~a~  240 (673)
                      -..+.++||=+|+.+++.--++...+.
T Consensus       104 K~~~i~~~GAeVi~~~~~~~~a~~~a~  130 (307)
T PRK08246        104 KVDRLRDYGAEVVVGGAEYADALAAAQ  130 (307)
T ss_pred             HHHHHHHCCCEEEEECCCCHHHHHHHH
T ss_conf             999999759879998687159999999


No 401
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=22.21  E-value=43  Score=12.46  Aligned_cols=19  Identities=37%  Similarity=0.492  Sum_probs=11.0

Q ss_pred             HHHHHHHHCCCCCCCHHHHHHH
Q ss_conf             9999999707688998898640
Q gi|254780655|r   85 LYYALLYLLGYQDVTIEDIKNF  106 (673)
Q Consensus        85 ~~Y~~~~l~G~~~~~~e~l~~~  106 (673)
                      +..+.+...||   +++++++=
T Consensus       319 AkvaaklalG~---~L~ei~n~  337 (1068)
T PRK12815        319 AKIAAKLAVGY---TLDEIKNP  337 (1068)
T ss_pred             HHHHHHHHCCC---CHHHCCCC
T ss_conf             99999986388---77770664


No 402
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=22.19  E-value=44  Score=12.46  Aligned_cols=23  Identities=13%  Similarity=0.196  Sum_probs=9.6

Q ss_pred             CEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             29999526889999999999997
Q gi|254780655|r  560 QVTIFSSGSELKIAVEACEILSS  582 (673)
Q Consensus       560 dv~iia~G~~v~~al~aa~~L~~  582 (673)
                      .+-..-+...+..|.+.-..+++
T Consensus       372 rvkf~P~~~~L~~C~e~G~~~A~  394 (479)
T PRK05452        372 KAKWRPDGDALELCREHGREIAR  394 (479)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHH
T ss_conf             57757898999999999999998


No 403
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=21.97  E-value=44  Score=12.43  Aligned_cols=40  Identities=18%  Similarity=0.378  Sum_probs=25.1

Q ss_pred             CCCEEEEECCHHHHHHH-HHHHHHHHCCCCEEEEECCCCCHHC
Q ss_conf             97299995268899999-9999999739943998574658100
Q gi|254780655|r  558 NAQVTIFSSGSELKIAV-EACEILSSRNISTRVVSVPCFELFF  599 (673)
Q Consensus       558 ~~dv~iia~G~~v~~al-~aa~~L~~~Gi~~~Vi~~~s~k~ld  599 (673)
                      +.||.|+  |+.+...+ +..+.+++.||.+.|||+--....+
T Consensus        48 ~~DvvLl--GPQv~y~~~~~~~~~~~~giPV~vI~~~dYG~mn   88 (102)
T COG1440          48 NADVVLL--GPQVRYMLKQLKEAAEEKGIPVEVIDMLDYGMMN   88 (102)
T ss_pred             CCCEEEE--CHHHHHHHHHHHHHHCCCCCCEEEECHHHCCCCC
T ss_conf             0898998--7289988999999843159976785789915768


No 404
>TIGR02415 23BDH acetoin reductases; InterPro: IPR014007   One member of this family, as characterised in Klebsiella terrigena , is able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also capable of irreversible reduction of diacetyl with NADH to acetoin. There has been a reuctance to classify the enzyme as either 1.1.1.4 from EC, which is (R,R)-butanediol dehydrogenase, or 1.1.1.5 from EC, which is acetoin dehydrogenase without a specified stereochemistry . Another member of this family, from Corynebacterium glutamicum (Brevibacterium flavum), is called L-2,3-butanediol dehydrogenase .    This enzyme is a homotetramer in the family of short chain dehydrogenases (IPR002198 from INTERPRO). .
Probab=21.95  E-value=44  Score=12.43  Aligned_cols=47  Identities=11%  Similarity=0.169  Sum_probs=27.9

Q ss_pred             EEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCC--CCCCCCHHHHHHHHHHHHH
Q ss_conf             69996276322322355678217998864144444--4444406788888887511
Q gi|254780655|r  192 IVLWDNNGISIDGPISLADSTDQYARFRASGWNTL--SVNGHDHHAITSTLRKAQL  245 (673)
Q Consensus       192 i~i~d~N~~si~~~~~~~~~~~~~~~~~a~Gw~~~--~vdG~d~~~i~~a~~~ak~  245 (673)
                      |+|.|-|++-       .....+.+.++..|.+-+  .+|=-|-+++.+++++|..
T Consensus        27 vav~D~n~Qe-------~~A~~t~~~i~~~G~~Ava~~~DV~~k~~~~~~i~~A~~   75 (258)
T TIGR02415        27 VAVADLNNQE-------ETAKETAKEINQKGGKAVAYKLDVSDKSQVFEAIDQAVE   75 (258)
T ss_pred             EEEECCCCCH-------HHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             7872566636-------899999999986697379986473456789999999999


No 405
>PRK07334 threonine dehydratase; Provisional
Probab=21.93  E-value=44  Score=12.42  Aligned_cols=28  Identities=21%  Similarity=0.182  Sum_probs=13.9

Q ss_pred             HHHHHCCCCCCCCCCCCHH-HHHHHHHHHH
Q ss_conf             9886414444444444067-8888888751
Q gi|254780655|r  216 ARFRASGWNTLSVNGHDHH-AITSTLRKAQ  244 (673)
Q Consensus       216 ~~~~a~Gw~~~~vdG~d~~-~i~~a~~~ak  244 (673)
                      .+.++||=+|+.. |.+++ +...|.+-++
T Consensus       108 ~~~r~~GA~Vil~-g~~~~~a~~~A~~~a~  136 (399)
T PRK07334        108 ERTRGFGAEVVLE-GDTFDEARAHARELAE  136 (399)
T ss_pred             HHHHHCCCEEEEE-CCCCHHHHHHHHHHHH
T ss_conf             9998569779997-8981699999999998


No 406
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=21.80  E-value=44  Score=12.40  Aligned_cols=19  Identities=16%  Similarity=0.377  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHCCCCEEEEE
Q ss_conf             9999999997399439985
Q gi|254780655|r  573 AVEACEILSSRNISTRVVS  591 (673)
Q Consensus       573 al~aa~~L~~~Gi~~~Vi~  591 (673)
                      ...+++.|.++|+++-+++
T Consensus        54 G~~~a~~l~~~gvdvvi~~   72 (121)
T COG1433          54 GIRIAELLVDEGVDVVIAS   72 (121)
T ss_pred             HHHHHHHHHHCCCCEEEEC
T ss_conf             1779999997699899977


No 407
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha).  DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=21.74  E-value=35  Score=13.16  Aligned_cols=17  Identities=24%  Similarity=0.411  Sum_probs=11.5

Q ss_pred             HHHHHHHHCCCCHHHHH
Q ss_conf             88887511022102220
Q gi|254780655|r  238 STLRKAQLSDKPTMIAC  254 (673)
Q Consensus       238 ~a~~~ak~~~kP~~I~~  254 (673)
                      +|+++|++.+||++|..
T Consensus         2 ~al~~a~~~gKpVlvdf   18 (104)
T cd02953           2 AALAQALAQGKPVFVDF   18 (104)
T ss_pred             HHHHHHHHCCCCEEEEE
T ss_conf             78999998299199999


No 408
>TIGR03035 trp_arylform arylformamidase. One of several pathways of tryptophan degradation is as follows: tryptophan 2,3-dioxygenase (1.13.11.11) uses 02 to convert Trp to L-formylkynurenine. Arylformamidase (3.5.1.9) hydrolyzes the product to L-kynurenine and formate. Kynureninase (3.7.1.3) hydrolyzes L-kynurenine to anthranilate plus alanine. Members of the seed alignment for this model are bacterial predicted metal-dependent hydrolases. All are supported as arylformamidase (3.5.1.9) by an operon structure in which kynureninase and/or tryptophan 2,3-dioxygenase genes are adjacent. The members from Bacillus cereus, Pseudomonas aeruginosa and Ralstonia metallidurans were characterized. An example from Pseudomonas fluorescens is given the gene symbol qbsH instead of kynB because of its role in quinolobactin biosynthesis, which begins with tryptophan. All members of this family should be arylformamidase (3.5.1.9).
Probab=21.71  E-value=44  Score=12.39  Aligned_cols=48  Identities=10%  Similarity=0.204  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCCCCCEEEEECC
Q ss_conf             99999999997399439985746581000868899964367977999728
Q gi|254780655|r  572 IAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIEA  621 (673)
Q Consensus       572 ~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE~  621 (673)
                      ...+||+.|.++|++.-=+|.+|+.+++...-..-..++.+.  ++.+|.
T Consensus       124 l~~eaa~~L~e~~i~~vGiD~~S~D~~~~~~~~~H~~ll~~g--i~iiE~  171 (206)
T TIGR03035       124 VAPDTIELLAEKGVRLIGIDTPSVDPLDSKTLDAHHALFRHG--MAILEN  171 (206)
T ss_pred             CCHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHCC--EEEEEC
T ss_conf             599999999978985999747867876677629999998799--689978


No 409
>PRK07538 hypothetical protein; Provisional
Probab=21.57  E-value=45  Score=12.37  Aligned_cols=15  Identities=13%  Similarity=0.116  Sum_probs=6.8

Q ss_pred             CHHHHHHHHHHHHHH
Q ss_conf             688999999999999
Q gi|254780655|r  567 GSELKIAVEACEILS  581 (673)
Q Consensus       567 G~~v~~al~aa~~L~  581 (673)
                      |.....|++=|-.|.
T Consensus       314 GqGan~AieDA~~La  328 (413)
T PRK07538        314 SNGASQAILDARALA  328 (413)
T ss_pred             CCHHHHHHHHHHHHH
T ss_conf             017879999999999


No 410
>PRK05883 acyl carrier protein; Validated
Probab=21.53  E-value=44  Score=12.40  Aligned_cols=37  Identities=27%  Similarity=0.396  Sum_probs=24.8

Q ss_pred             CEEEEECCCCHHHHHHHHHH----CCCCCCCHHHHHHHHCCC
Q ss_conf             77998565201899999997----076889988986400038
Q gi|254780655|r   73 DRFVLSAGHGSMLYYALLYL----LGYQDVTIEDIKNFRTIG  110 (673)
Q Consensus        73 Dr~v~s~GH~s~~~Y~~~~l----~G~~~~~~e~l~~~r~~~  110 (673)
                      -|+|=|.|--|.++|..+..    +|.+ ++.|+|.++++.|
T Consensus        32 ~rLvdDlG~DSl~f~~~vi~ie~~fGi~-i~eEdll~~~TVG   72 (85)
T PRK05883         32 ARLVDDVGLDSVAFAVGMVAIEERLGVA-LSEEDLLSCDTVG   72 (85)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHCCC-CCHHHHHCCCHHH
T ss_conf             4655640734799999999999986663-5899985236099


No 411
>PRK07049 methionine gamma-lyase; Validated
Probab=21.51  E-value=45  Score=12.36  Aligned_cols=79  Identities=20%  Similarity=0.189  Sum_probs=45.1

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCC-CCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             143445578876522022330699962763223223556782179988641444-4444444067888888875110221
Q gi|254780655|r  171 LMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWN-TLSVNGHDHHAITSTLRKAQLSDKP  249 (673)
Q Consensus       171 l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~Gw~-~~~vdG~d~~~i~~a~~~ak~~~kP  249 (673)
                      ..-||+-=+..+....+-..-|+. -++-+   |.+...    ....+..+|.+ +.-+|+.|.+.+.++++++....+.
T Consensus       104 ~sSGmaAi~~~ll~ll~~Gd~iv~-~~~~Y---ggT~~l----~~~~l~~~GI~~~~~~d~~d~~~~~~~i~~~~~~~~T  175 (427)
T PRK07049        104 FSSGMSAIATTLLAFVRPGDVIVH-SQPLY---GGTETL----LAKTFRNFGVGAVGFADGVSEAAIEAAAEAAAAKGRV  175 (427)
T ss_pred             ECCHHHHHHHHHHHHCCCCCEEEE-CCCCC---HHHHHH----HHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCE
T ss_conf             346999999999985189999998-99982---789999----9999997598899970899999999999862147870


Q ss_pred             HHHHHCCC
Q ss_conf             02220133
Q gi|254780655|r  250 TMIACETV  257 (673)
Q Consensus       250 ~~I~~~T~  257 (673)
                      .+|.+.|.
T Consensus       176 klv~~Esp  183 (427)
T PRK07049        176 SLIYIETP  183 (427)
T ss_pred             EEEEEECC
T ss_conf             69999789


No 412
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit; InterPro: IPR012062   Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases , . However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity . It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ  and other members of this family turned out to be erroneous , .; GO: 0009024 tagatose-6-phosphate kinase activity, 0019402 galactitol metabolic process.
Probab=21.42  E-value=42  Score=12.60  Aligned_cols=20  Identities=30%  Similarity=0.596  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHCCCCHHHHHC
Q ss_conf             88888875110221022201
Q gi|254780655|r  236 ITSTLRKAQLSDKPTMIACE  255 (673)
Q Consensus       236 i~~a~~~ak~~~kP~~I~~~  255 (673)
                      |..|++.|+.++.|++|++-
T Consensus        26 lEAA~~~A~~~~~~VLIEAT   45 (430)
T TIGR02810        26 LEAALRRARASGTPVLIEAT   45 (430)
T ss_pred             HHHHHHHHHHCCCCCEEEEC
T ss_conf             99999988752897137731


No 413
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=21.15  E-value=46  Score=12.31  Aligned_cols=26  Identities=15%  Similarity=0.438  Sum_probs=14.0

Q ss_pred             EEEECCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             999526889999999999997399439
Q gi|254780655|r  562 TIFSSGSELKIAVEACEILSSRNISTR  588 (673)
Q Consensus       562 ~iia~G~~v~~al~aa~~L~~~Gi~~~  588 (673)
                      .++++|+..-. -.+++.+++.|+.+.
T Consensus       182 ~i~~cGP~~Mm-k~v~~~~~~~gi~~~  207 (246)
T cd06218         182 VVYACGPEPML-KAVAELAAERGVPCQ  207 (246)
T ss_pred             EEEEECCHHHH-HHHHHHHHHCCCCEE
T ss_conf             99997999999-999999997399699


No 414
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=21.10  E-value=46  Score=12.31  Aligned_cols=95  Identities=16%  Similarity=0.237  Sum_probs=48.0

Q ss_pred             CEEEE---ECCHHHHHHHHHHHHHHH--CCCCEEEEECCCCCHHCCCCHHHHHHHCCCCCEEE---EECCCCHHHHHHH-
Q ss_conf             29999---526889999999999997--39943998574658100086889996436797799---9728602789998-
Q gi|254780655|r  560 QVTIF---SSGSELKIAVEACEILSS--RNISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKI---AIEAGLRQGWDAF-  630 (673)
Q Consensus       560 dv~ii---a~G~~v~~al~aa~~L~~--~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~v---tiE~g~~~g~~~~-  630 (673)
                      .|+|+   .+|++-..|-..++-|++  +|+.++++|+....+     .....++......++   |++++.-.....+ 
T Consensus       249 ~v~IvY~SmyG~T~~mA~aia~gl~~~~~gv~V~~~d~~~~~~-----s~i~~~i~~a~~~ilGsPT~n~~~~p~i~~~l  323 (395)
T PRK11921        249 QITIIYDTMWNSTRRMAEAIAEGIKKANPDVTVKLFNSAKSDK-----NDIITEVFKSKAILVGSPTINRGILSSTAGIL  323 (395)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCH-----HHHHHHHHHCCCEEEECCCCCCCCHHHHHHHH
T ss_conf             4999997760679999999999998408996699998988999-----99999998669589972673776458999999


Q ss_pred             -----HCCCCCEEEE-CCCCCCCCH----HHHHHHCCCC
Q ss_conf             -----4579818983-577676888----8999980999
Q gi|254780655|r  631 -----IGSDGSFIGM-QGFGASGSC----DLLYQHFGIN  659 (673)
Q Consensus       631 -----~~~~~~~igi-d~Fg~sg~~----~el~~~~Gld  659 (673)
                           +...++..++ -.||-||-.    ++.++..|+.
T Consensus       324 ~~l~~~~~~~K~~~~FGSyGWsgea~~~i~~~l~~~g~~  362 (395)
T PRK11921        324 EEIKGLGFKEKKAAAFGSYGWSGESVKIITERLKKAGFE  362 (395)
T ss_pred             HHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf             999727667988999961787877899999999987992


No 415
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=21.08  E-value=46  Score=12.30  Aligned_cols=37  Identities=22%  Similarity=0.452  Sum_probs=25.6

Q ss_pred             CCCCCEEEEECCH--HHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             6997299995268--89999999999997399439985746
Q gi|254780655|r  556 TPNAQVTIFSSGS--ELKIAVEACEILSSRNISTRVVSVPC  594 (673)
Q Consensus       556 ~~~~dv~iia~G~--~v~~al~aa~~L~~~Gi~~~Vi~~~s  594 (673)
                      .++++++++++|.  +|...-+|.+.+++++.  .|+-.|+
T Consensus        59 ee~~E~ivvGTG~~G~l~l~~ea~e~~r~k~~--~vi~~pT   97 (121)
T COG1504          59 EEGPEVIVVGTGQSGMLELSEEAREFFRKKGC--EVIELPT   97 (121)
T ss_pred             HCCCCEEEEECCCEEEEEECHHHHHHHHHCCC--EEEEECC
T ss_conf             60996899914842589958999999985497--0798279


No 416
>PRK06753 hypothetical protein; Provisional
Probab=21.04  E-value=46  Score=12.30  Aligned_cols=16  Identities=25%  Similarity=0.243  Sum_probs=7.5

Q ss_pred             CCHHHHHHHHHHHHHH
Q ss_conf             2688999999999999
Q gi|254780655|r  566 SGSELKIAVEACEILS  581 (673)
Q Consensus       566 ~G~~v~~al~aa~~L~  581 (673)
                      .|..+..|++=|-.|+
T Consensus       286 ~GQGan~aieDA~~LA  301 (373)
T PRK06753        286 MGQGAGQAMEDAIVLV  301 (373)
T ss_pred             CCCHHHHHHHHHHHHH
T ss_conf             0001779999999999


No 417
>cd00242 Ecotin Protease Inhibitor Ecotin; homodimeric protease inhibitor. Protease Inhibitor Ecotin; homodimeric protease inhibitor which binds two chymotrypsin-like serine proteases to form a heterotetramer. Found in bacterial periplasm. Inhibits a broad range of serine proteases including collagenase, trypsin, chymotrypsin, elastase, and factor Xa but not thrombin. Inhibition mechanism involves binding at two different protease contact sites: the primary and secondary binding sites. Primary site loops of ecotin bind to the active site of target proteases in a substrate-like manner with the P1 residue in ecotin mimicking the interactions of a canonical P1 substrate residue.
Probab=21.01  E-value=42  Score=12.56  Aligned_cols=32  Identities=16%  Similarity=0.210  Sum_probs=20.2

Q ss_pred             EEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
Q ss_conf             999627632232235567821799886414444444444
Q gi|254780655|r  193 VLWDNNGISIDGPISLADSTDQYARFRASGWNTLSVNGH  231 (673)
Q Consensus       193 ~i~d~N~~si~~~~~~~~~~~~~~~~~a~Gw~~~~vdG~  231 (673)
                      +-+|+|...+.|.++.-       .+++.|.++..+++-
T Consensus        42 ~~vDCN~~~l~G~lee~-------tl~GwGY~YY~v~~~   73 (136)
T cd00242          42 LEVDCNQHRLGGNLEEK-------TLEGWGYDYYVVDKV   73 (136)
T ss_pred             EEEECCCCEECCEEEEE-------EECCCCCEEEEECCC
T ss_conf             99724764785678784-------325778325998158


No 418
>TIGR00551 nadB L-aspartate oxidase; InterPro: IPR005288    L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbour-joining trees.; GO: 0008734 L-aspartate oxidase activity, 0009435 NAD biosynthetic process, 0005737 cytoplasm.
Probab=20.94  E-value=46  Score=12.28  Aligned_cols=92  Identities=17%  Similarity=0.182  Sum_probs=50.6

Q ss_pred             EEEEEECCC-CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf             599984362-1143445578876522022330699962763223223556782179988641444444444406788888
Q gi|254780655|r  161 YTYVLVGDG-CLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTLSVNGHDHHAITST  239 (673)
Q Consensus       161 ~v~~iiGDG-~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~Gw~~~~vdG~d~~~i~~a  239 (673)
                      +-++|++-+ +.++|.++=|        -.=+=+.++.|+-||+.++.+..       .-+.|       =+|.+++..-
T Consensus        26 ~~V~v~~K~a~~~~~~s~yA--------QGGIAa~~~~~DdSi~~Hv~DTL-------~AGaG-------~cD~~aV~~v   83 (546)
T TIGR00551        26 RDVVVISKAAEVKESASYYA--------QGGIAAALAETDDSIDAHVEDTL-------AAGAG-------LCDEEAVEFV   83 (546)
T ss_pred             CEEEEECCCCCCCCCCCCEE--------CCCEEEECCCCCCCHHHHHHHHH-------HHCCC-------CCCHHHHHHH
T ss_conf             63789758755556752000--------11266303875585687789999-------84467-------8868899999


Q ss_pred             HHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             88751102210222013345557000477110334372233212566
Q gi|254780655|r  240 LRKAQLSDKPTMIACETVIGFGSPNRAGTNKVHGSALGQEEIKATRK  286 (673)
Q Consensus       240 ~~~ak~~~kP~~I~~~T~kG~G~~~~e~~~~~HG~~l~~ee~~~~~k  286 (673)
                      +.+++..     |  ......|++|-+     |..+-|+|.+..+|+
T Consensus        84 ~~~~~~a-----v--~~L~~~Gv~FD~-----~~~gnGee~~~LtrE  118 (546)
T TIGR00551        84 VSDAKEA-----V--QELVEAGVSFDR-----NEQGNGEERLALTRE  118 (546)
T ss_pred             HHHHHHH-----H--HHHHHCCCEECC-----CCCCCCCCCCCCCCC
T ss_conf             8536899-----9--999866922026-----779887443100133


No 419
>TIGR01394 TypA_BipA GTP-binding protein TypA; InterPro: IPR006298   This bacterial (and Arabidopsis) protein, termed TypA or BipA, is a GTP-binding protein. It is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.; GO: 0005525 GTP binding, 0005622 intracellular.
Probab=20.92  E-value=42  Score=12.56  Aligned_cols=36  Identities=17%  Similarity=0.429  Sum_probs=18.5

Q ss_pred             CCCCCCC-----C--CCCCHHHHHHHHHH-H----HHCCCCHHHHHCC
Q ss_conf             1444444-----4--44406788888887-5----1102210222013
Q gi|254780655|r  221 SGWNTLS-----V--NGHDHHAITSTLRK-A----QLSDKPTMIACET  256 (673)
Q Consensus       221 ~Gw~~~~-----v--dG~d~~~i~~a~~~-a----k~~~kP~~I~~~T  256 (673)
                      .||-...     .  +..|++-|.+++-+ .    -..+.|.-+.+-|
T Consensus       171 ~G~A~l~~~~dg~~~~~~~m~PLFd~I~~hvPaP~~~~d~PlQmlvt~  218 (609)
T TIGR01394       171 AGWASLDKDKDGLDDDSEDMAPLFDAILRHVPAPKGDLDEPLQMLVTN  218 (609)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHEEEE
T ss_conf             672014466577887220178999898640688898887624210001


No 420
>PTZ00336 elongation factor 1-alpha; Provisional
Probab=20.92  E-value=39  Score=12.79  Aligned_cols=37  Identities=22%  Similarity=0.379  Sum_probs=27.2

Q ss_pred             EEEE-ECCCCCC-----CHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             9998-4362114-----3445578876522022330699962763
Q gi|254780655|r  162 TYVL-VGDGCLM-----EGISQEAISFAGHLGLSKLIVLWDNNGI  200 (673)
Q Consensus       162 v~~i-iGDG~l~-----eG~~~EAl~~A~~~~l~nli~i~d~N~~  200 (673)
                      +.+| .-+|++.     .|++-|=+.++..++..++|+.+  |+|
T Consensus       113 iLVVdA~~G~~e~g~~~~gQTreHl~i~~~Lgv~~iiV~v--NKm  155 (449)
T PTZ00336        113 ILMIDSTHGGFEAGISKDGQTREHALLAFTLGVKQMVVCC--NKM  155 (449)
T ss_pred             EEEEECCCCCEECCCCCCCCCHHHHHHHHHCCCCEEEEEE--ECC
T ss_conf             9999878774103556677539999999866997799998--620


No 421
>PRK05269 transaldolase B; Provisional
Probab=20.69  E-value=47  Score=12.25  Aligned_cols=29  Identities=21%  Similarity=0.352  Sum_probs=12.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             444444440678888888751102210222
Q gi|254780655|r  224 NTLSVNGHDHHAITSTLRKAQLSDKPTMIA  253 (673)
Q Consensus       224 ~~~~vdG~d~~~i~~a~~~ak~~~kP~~I~  253 (673)
                      .++.+|--|+++|.+ +.---.+--|++|.
T Consensus        12 T~VVaDTgD~~~I~~-~~P~DaTTNPSLil   40 (320)
T PRK05269         12 TTVVADTGDIEAIKK-YQPQDATTNPSLIL   40 (320)
T ss_pred             CEEECCCCCHHHHHH-CCCCCCCCCHHHHH
T ss_conf             768668758999986-09987771899999


No 422
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=20.54  E-value=47  Score=12.23  Aligned_cols=21  Identities=14%  Similarity=0.327  Sum_probs=8.9

Q ss_pred             EEEECC---HHHHHHHHHHHHHHH
Q ss_conf             999526---889999999999997
Q gi|254780655|r  562 TIFSSG---SELKIAVEACEILSS  582 (673)
Q Consensus       562 ~iia~G---~~v~~al~aa~~L~~  582 (673)
                      .++++|   ..+..+--+++.+++
T Consensus       374 l~~a~Gh~~~G~~~ap~~g~~lA~  397 (416)
T PRK00711        374 LFLNTGHGTLGWTMACGSGQLLAD  397 (416)
T ss_pred             EEEEECCHHHHHHHHHHHHHHHHH
T ss_conf             999988836899999999999999


Done!