Query gi|254780655|ref|YP_003065068.1| transketolase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 673
No_of_seqs 226 out of 4615
Neff 7.1
Searched_HMMs 39220
Date Sun May 29 21:22:07 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780655.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00232 tktlase_bact transke 100.0 0 0 1467.1 40.6 652 20-672 1-675 (675)
2 COG0021 TktA Transketolase [Ca 100.0 0 0 1383.2 52.3 651 15-672 2-663 (663)
3 PTZ00089 transketolase; Provis 100.0 0 0 1331.1 53.4 647 15-672 2-666 (670)
4 PRK12753 transketolase; Review 100.0 0 0 1324.6 54.6 650 19-671 3-662 (662)
5 PRK12754 transketolase; Review 100.0 0 0 1314.6 54.4 651 18-671 3-663 (663)
6 PRK05899 transketolase; Review 100.0 0 0 1287.8 55.6 651 13-672 2-661 (661)
7 KOG0523 consensus 100.0 0 0 1107.6 35.1 613 14-672 5-626 (632)
8 PRK05444 1-deoxy-D-xylulose-5- 100.0 0 0 1038.4 44.0 551 1-671 10-576 (576)
9 PRK12315 1-deoxy-D-xylulose-5- 100.0 0 0 1010.8 41.7 553 1-672 6-581 (581)
10 PRK12571 1-deoxy-D-xylulose-5- 100.0 0 0 997.6 42.3 558 1-672 12-629 (642)
11 COG1154 Dxs Deoxyxylulose-5-ph 100.0 0 0 928.0 37.9 559 1-672 8-623 (627)
12 pfam00456 Transketolase_N Tran 100.0 0 0 716.4 27.6 324 19-343 2-333 (333)
13 PRK09405 aceE pyruvate dehydro 100.0 0 0 580.6 44.5 637 15-672 74-857 (886)
14 COG2609 AceE Pyruvate dehydrog 100.0 0 0 575.9 43.0 641 17-672 76-858 (887)
15 TIGR00759 aceE 2-oxo-acid dehy 100.0 0 0 576.8 37.0 635 15-672 71-876 (905)
16 cd02012 TPP_TK Thiamine pyroph 100.0 0 0 561.2 20.6 253 24-285 1-255 (255)
17 PRK13012 2-oxoacid dehydrogena 100.0 0 0 529.1 41.5 629 16-672 86-869 (898)
18 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 0 0 530.9 31.8 558 1-672 4-627 (627)
19 TIGR03186 AKGDH_not_PDH alpha- 100.0 0 0 515.3 40.3 629 17-672 73-859 (889)
20 COG3959 Transketolase, N-termi 100.0 0 0 504.3 20.1 237 14-259 5-243 (243)
21 COG3958 Transketolase, C-termi 100.0 0 0 500.7 20.8 294 364-671 7-312 (312)
22 cd02017 TPP_E1_EcPDC_like Thia 100.0 0 0 426.6 23.9 270 17-292 2-354 (386)
23 cd02007 TPP_DXS Thiamine pyrop 100.0 0 0 412.6 15.3 194 39-262 1-195 (195)
24 PRK09212 pyruvate dehydrogenas 100.0 2.5E-43 0 332.7 21.6 297 364-672 4-324 (327)
25 CHL00144 odpB pyruvate dehydro 100.0 3E-42 0 324.9 20.8 295 367-672 7-324 (326)
26 PTZ00182 3-methyl-2-oxobutanat 100.0 2.1E-36 5.5E-41 282.5 21.6 292 364-672 35-355 (355)
27 cd07033 TPP_PYR_DXS_TK_like Py 100.0 4.2E-36 1.1E-40 280.4 8.1 155 368-530 1-156 (156)
28 PRK05261 putative phosphoketol 100.0 1.2E-29 3.1E-34 233.6 30.2 611 16-670 7-741 (786)
29 pfam02779 Transket_pyr Transke 100.0 2E-33 5.1E-38 261.0 9.0 169 363-534 2-173 (174)
30 COG3957 Phosphoketolase [Carbo 100.0 1.3E-29 3.4E-34 233.4 28.0 587 39-671 60-769 (793)
31 PRK11892 pyruvate dehydrogenas 100.0 9.7E-29 2.5E-33 227.1 22.6 293 365-671 143-462 (464)
32 smart00861 Transket_pyr Transk 100.0 7.3E-31 1.9E-35 242.5 9.3 165 365-532 1-168 (168)
33 COG0022 AcoB Pyruvate/2-oxoglu 100.0 3.6E-27 9.1E-32 215.8 20.0 287 367-672 5-323 (324)
34 KOG0524 consensus 99.9 8.9E-23 2.3E-27 183.9 16.8 294 364-672 35-359 (359)
35 TIGR03181 PDH_E1_alph_x pyruva 99.9 4.8E-21 1.2E-25 171.4 19.9 172 73-263 76-252 (341)
36 cd07036 TPP_PYR_E1-PDHc-beta_l 99.9 2.1E-23 5.4E-28 188.5 7.6 154 369-530 2-167 (167)
37 CHL00149 odpA pyruvate dehydro 99.9 4.1E-20 1.1E-24 164.6 23.1 139 123-262 123-266 (343)
38 cd02000 TPP_E1_PDC_ADC_BCADC T 99.9 2.2E-20 5.5E-25 166.7 18.8 173 73-262 49-233 (293)
39 pfam00676 E1_dh Dehydrogenase 99.9 9.4E-20 2.4E-24 162.0 20.4 132 124-263 98-234 (303)
40 TIGR03182 PDH_E1_alph_y pyruva 99.9 1.6E-19 4.1E-24 160.4 21.0 131 124-262 104-239 (315)
41 COG1071 AcoA Pyruvate/2-oxoglu 99.8 1.2E-18 3.1E-23 154.0 19.2 133 124-263 130-267 (358)
42 KOG1182 consensus 99.7 1.9E-16 4.8E-21 138.1 9.9 154 96-257 153-318 (432)
43 pfam02780 Transketolase_C Tran 99.6 2.1E-15 5.2E-20 130.6 11.3 110 549-663 1-124 (124)
44 pfam09364 XFP_N XFP N-terminal 99.6 2.9E-15 7.5E-20 129.5 10.4 244 16-278 4-308 (379)
45 cd02011 TPP_PK Thiamine pyroph 99.6 1.4E-14 3.6E-19 124.6 8.7 174 79-264 2-210 (227)
46 KOG0225 consensus 99.5 1.7E-13 4.4E-18 116.7 9.2 137 128-286 163-312 (394)
47 KOG0525 consensus 99.5 2.3E-13 6E-18 115.7 9.2 243 411-672 86-361 (362)
48 cd00568 TPP_enzymes Thiamine p 99.5 3.2E-13 8.2E-18 114.7 9.0 145 72-256 13-168 (168)
49 PRK08659 2-oxoglutarate ferred 99.4 2E-10 5.1E-15 94.5 18.7 105 554-672 269-377 (377)
50 PRK09627 oorA 2-oxoglutarate-a 99.3 2.9E-10 7.4E-15 93.3 14.9 233 420-670 55-375 (375)
51 PRK07119 2-ketoisovalerate fer 99.3 3.8E-10 9.8E-15 92.5 15.1 237 419-672 54-349 (350)
52 cd03371 TPP_PpyrDC Thiamine py 99.3 1E-10 2.6E-15 96.7 11.6 148 73-260 16-166 (188)
53 PRK06457 pyruvate dehydrogenas 99.2 2.7E-09 6.8E-14 86.4 15.1 100 426-529 405-517 (549)
54 cd02010 TPP_ALS Thiamine pyrop 99.2 3.2E-10 8.1E-15 93.1 10.1 114 128-256 46-169 (177)
55 TIGR03457 sulphoacet_xsc sulfo 99.1 2.2E-09 5.6E-14 87.0 12.4 154 372-531 385-559 (579)
56 PRK09107 acetolactate synthase 99.1 4.2E-10 1.1E-14 92.2 8.1 32 497-529 520-551 (594)
57 pfam02775 TPP_enzyme_C Thiamin 99.1 4.2E-10 1.1E-14 92.2 7.9 113 127-254 25-150 (150)
58 cd02015 TPP_AHAS Thiamine pyro 99.1 4.5E-10 1.1E-14 92.0 7.9 114 129-257 49-174 (186)
59 cd02014 TPP_POX Thiamine pyrop 99.1 4.5E-10 1.1E-14 92.0 7.7 116 127-257 48-173 (178)
60 PRK06965 acetolactate synthase 99.1 6.3E-10 1.6E-14 90.9 8.5 119 409-528 425-559 (587)
61 PRK06546 pyruvate dehydrogenas 99.1 6.4E-10 1.6E-14 90.9 8.3 101 427-529 416-528 (578)
62 cd02004 TPP_BZL_OCoD_HPCL Thia 99.1 5.9E-10 1.5E-14 91.1 7.9 114 128-256 46-171 (172)
63 cd02001 TPP_ComE_PpyrDC Thiami 99.1 5.7E-10 1.5E-14 91.2 7.8 118 126-259 38-157 (157)
64 PRK07789 acetolactate synthase 99.1 6.7E-10 1.7E-14 90.7 7.8 119 409-528 435-573 (612)
65 PRK07092 benzoylformate decarb 99.1 8.5E-10 2.2E-14 90.0 8.3 85 166-254 72-159 (521)
66 PRK08266 hypothetical protein; 99.1 7E-10 1.8E-14 90.6 7.8 29 497-526 489-517 (531)
67 PRK08155 acetolactate synthase 99.1 6.4E-10 1.6E-14 90.9 7.6 103 425-529 425-541 (564)
68 PRK08527 acetolactate synthase 99.1 6.4E-10 1.6E-14 90.9 7.6 151 372-528 370-536 (560)
69 PRK09124 pyruvate dehydrogenas 99.1 7.4E-10 1.9E-14 90.4 7.8 120 407-529 394-528 (574)
70 PRK06725 acetolactate synthase 99.1 6.8E-10 1.7E-14 90.7 7.6 121 406-529 407-543 (570)
71 PRK06276 acetolactate synthase 99.1 6.8E-10 1.7E-14 90.7 7.6 123 405-529 403-541 (586)
72 PRK08978 acetolactate synthase 99.1 8.5E-10 2.2E-14 90.0 8.0 32 497-529 492-523 (548)
73 PRK05858 hypothetical protein; 99.0 8.5E-10 2.2E-14 90.0 7.9 31 497-528 498-528 (543)
74 PRK07064 hypothetical protein; 99.0 1.3E-09 3.3E-14 88.6 8.8 31 497-528 495-525 (544)
75 PRK06466 acetolactate synthase 99.0 7.1E-10 1.8E-14 90.5 7.4 121 407-528 409-545 (574)
76 PRK07710 acetolactate synthase 99.0 6.2E-10 1.6E-14 91.0 7.0 119 407-528 410-545 (571)
77 TIGR03297 Ppyr-DeCO2ase phosph 99.0 3E-09 7.5E-14 86.1 10.5 113 410-528 213-333 (361)
78 PRK06456 acetolactate synthase 99.0 7.3E-10 1.9E-14 90.4 7.3 152 372-529 376-543 (572)
79 PRK07524 hypothetical protein; 99.0 8.3E-10 2.1E-14 90.0 7.6 31 559-590 427-457 (534)
80 PRK08611 pyruvate oxidase; Pro 99.0 8.6E-10 2.2E-14 89.9 7.6 152 371-529 362-528 (576)
81 PRK12474 hypothetical protein; 99.0 1.2E-09 2.9E-14 89.0 8.2 42 213-254 118-162 (518)
82 CHL00099 ilvB acetohydroxyacid 99.0 9.1E-10 2.3E-14 89.8 7.6 31 497-528 518-548 (588)
83 PRK08322 acetolactate synthase 99.0 9.4E-10 2.4E-14 89.7 7.6 31 497-528 495-525 (547)
84 PRK08199 acetolactate synthase 99.0 1.4E-09 3.5E-14 88.4 8.4 17 236-252 140-157 (553)
85 cd02003 TPP_IolD Thiamine pyro 99.0 1.1E-09 2.7E-14 89.3 7.7 116 128-258 46-185 (205)
86 PRK07418 acetolactate synthase 99.0 1.2E-09 3E-14 89.0 7.9 151 371-530 390-560 (615)
87 PRK06882 acetolactate synthase 99.0 1.2E-09 2.9E-14 89.0 7.7 73 455-527 458-542 (574)
88 cd02002 TPP_BFDC Thiamine pyro 99.0 8.7E-10 2.2E-14 89.9 7.1 112 129-255 48-177 (178)
89 PRK08617 acetolactate synthase 99.0 1.6E-09 4E-14 88.1 8.1 30 497-527 503-532 (552)
90 PRK07282 acetolactate synthase 99.0 1.1E-09 2.7E-14 89.3 7.2 30 497-528 509-538 (566)
91 PRK06112 acetolactate synthase 99.0 1.4E-09 3.6E-14 88.4 7.8 31 497-528 530-560 (581)
92 PRK06048 acetolactate synthase 99.0 1.1E-09 2.7E-14 89.3 7.0 121 406-528 399-535 (562)
93 TIGR03393 indolpyr_decarb indo 99.0 1.5E-09 3.7E-14 88.3 7.7 105 428-535 413-533 (539)
94 cd02005 TPP_PDC_IPDC Thiamine 99.0 2E-09 5E-14 87.3 8.0 113 129-256 49-173 (183)
95 PRK07586 hypothetical protein; 99.0 1.9E-09 4.8E-14 87.5 7.8 26 229-254 131-158 (514)
96 PRK07979 acetolactate synthase 99.0 1.6E-09 4E-14 88.1 7.3 30 497-526 512-543 (574)
97 PRK08979 acetolactate synthase 99.0 1.9E-09 4.9E-14 87.4 7.3 121 407-528 407-543 (572)
98 PRK07525 sulfoacetaldehyde ace 99.0 2.9E-09 7.4E-14 86.1 8.0 38 497-534 526-568 (589)
99 cd02013 TPP_Xsc_like Thiamine 99.0 3.1E-09 7.9E-14 85.9 8.0 117 127-258 50-180 (196)
100 PRK06154 hypothetical protein; 99.0 3E-09 7.8E-14 86.0 7.6 18 236-253 146-164 (556)
101 PRK06163 hypothetical protein; 99.0 5.5E-09 1.4E-13 84.1 8.8 114 126-256 53-172 (202)
102 PRK08327 acetolactate synthase 98.9 3.3E-09 8.5E-14 85.7 7.5 33 558-590 449-482 (568)
103 PRK09259 putative oxalyl-CoA d 98.9 4.1E-09 1E-13 85.0 7.7 116 410-529 416-547 (572)
104 TIGR03254 oxalate_oxc oxalyl-C 98.9 4.9E-09 1.2E-13 84.5 7.1 101 426-529 424-536 (554)
105 COG0028 IlvB Thiamine pyrophos 98.9 3.7E-09 9.4E-14 85.4 6.4 150 370-529 361-529 (550)
106 TIGR03394 indol_phenyl_DC indo 98.9 8.9E-09 2.3E-13 82.6 8.2 17 123-141 64-80 (535)
107 PRK08273 pyruvate decarboxylas 98.9 6.8E-09 1.7E-13 83.5 7.5 164 371-539 369-555 (597)
108 PRK11269 glyoxylate carboligas 98.9 1.1E-08 2.8E-13 82.0 8.1 149 372-527 374-552 (591)
109 cd02006 TPP_Gcl Thiamine pyrop 98.9 1.1E-08 2.8E-13 81.9 8.1 114 128-256 55-193 (202)
110 PRK07449 2-succinyl-6-hydroxy- 98.9 1E-08 2.7E-13 82.1 7.8 31 497-528 496-526 (548)
111 PRK08367 porA pyruvate ferredo 98.8 8.7E-08 2.2E-12 75.4 11.8 63 556-621 259-321 (395)
112 cd02009 TPP_SHCHC_synthase Thi 98.8 1.4E-08 3.5E-13 81.2 7.4 114 127-256 46-174 (175)
113 cd03372 TPP_ComE Thiamine pyro 98.8 3.6E-08 9.2E-13 78.2 8.3 115 127-259 39-157 (179)
114 PRK08366 vorA 2-ketoisovalerat 98.8 6.9E-07 1.8E-11 68.9 14.1 63 556-621 261-323 (394)
115 PRK09622 porA pyruvate flavodo 98.7 6.8E-07 1.7E-11 69.0 13.9 199 413-620 58-326 (407)
116 PRK09404 kgd alpha-ketoglutara 98.6 8.4E-05 2.1E-09 53.8 20.9 204 415-627 653-880 (931)
117 cd02008 TPP_IOR_alpha Thiamine 98.5 3.3E-07 8.5E-12 71.2 7.4 113 130-255 51-175 (178)
118 TIGR00118 acolac_lg acetolacta 98.3 2E-06 5.1E-11 65.5 5.8 394 40-528 21-568 (593)
119 TIGR03336 IOR_alpha indolepyru 98.2 0.0004 1E-08 48.9 16.5 105 425-530 409-529 (595)
120 COG3961 Pyruvate decarboxylase 98.1 5.3E-06 1.4E-10 62.5 6.0 28 229-256 141-169 (557)
121 COG0674 PorA Pyruvate:ferredox 98.1 0.00016 4.2E-09 51.7 13.4 65 557-624 255-322 (365)
122 PRK12270 kgd alpha-ketoglutara 98.1 0.0015 3.7E-08 44.9 20.0 204 415-627 957-1184(1234)
123 KOG1185 consensus 98.0 6.9E-05 1.8E-09 54.4 10.0 184 40-253 8-224 (571)
124 cd03375 TPP_OGFOR Thiamine pyr 98.0 2.5E-05 6.3E-10 57.7 7.6 113 132-256 53-183 (193)
125 COG4231 Indolepyruvate ferredo 98.0 0.00099 2.5E-08 46.1 15.7 104 425-530 434-553 (640)
126 COG3962 Acetolactate synthase 98.0 1.8E-05 4.6E-10 58.6 5.8 89 133-243 65-169 (617)
127 KOG0451 consensus 97.8 0.00053 1.4E-08 48.0 11.5 503 72-602 210-839 (913)
128 KOG1184 consensus 97.8 4.9E-05 1.2E-09 55.5 5.8 30 229-258 141-171 (561)
129 cd03376 TPP_PFOR_porB_like Thi 97.7 0.00033 8.5E-09 49.5 9.2 123 129-257 55-200 (235)
130 TIGR02720 pyruv_oxi_spxB pyruv 97.6 0.00017 4.4E-09 51.6 6.2 16 40-57 19-34 (577)
131 cd06586 TPP_enzyme_PYR Pyrimid 97.6 0.00018 4.5E-09 51.5 6.0 117 411-530 34-154 (154)
132 COG4231 Indolepyruvate ferredo 97.6 0.00012 3E-09 52.8 5.1 16 39-56 35-50 (640)
133 PRK08322 acetolactate synthase 97.5 0.00073 1.9E-08 47.0 8.5 19 235-253 137-156 (547)
134 cd02018 TPP_PFOR Thiamine pyro 97.5 0.0015 3.8E-08 44.8 9.4 127 129-256 57-202 (237)
135 TIGR03336 IOR_alpha indolepyru 97.5 0.00026 6.8E-09 50.2 5.4 28 569-596 505-533 (595)
136 PRK11864 2-ketoisovalerate fer 97.4 0.0014 3.6E-08 45.0 8.8 123 132-262 71-214 (300)
137 pfam03894 XFP D-xylulose 5-pho 97.3 0.00051 1.3E-08 48.1 5.6 146 370-518 4-178 (179)
138 PRK11865 pyruvate ferredoxin o 97.3 0.0035 8.9E-08 42.1 9.3 119 131-257 68-209 (298)
139 PRK07525 sulfoacetaldehyde ace 97.2 0.0033 8.4E-08 42.3 8.9 42 213-254 118-161 (589)
140 PRK07092 benzoylformate decarb 97.0 0.012 3.1E-07 38.2 10.2 115 410-528 388-518 (521)
141 PRK07979 acetolactate synthase 97.0 0.0085 2.2E-07 39.3 9.4 25 230-254 135-161 (574)
142 pfam09363 XFP_C XFP C-terminal 97.0 0.037 9.4E-07 34.7 12.2 130 541-670 12-161 (203)
143 TIGR02176 pyruv_ox_red pyruvat 97.0 0.004 1E-07 41.7 7.2 61 556-619 262-322 (1194)
144 PRK07789 acetolactate synthase 96.9 0.0055 1.4E-07 40.7 7.3 32 558-590 466-497 (612)
145 cd02016 TPP_E1_OGDC_like Thiam 96.9 0.0033 8.4E-08 42.3 6.2 119 137-262 120-251 (265)
146 PRK07282 acetolactate synthase 96.9 0.0041 1E-07 41.6 6.5 42 547-590 427-468 (566)
147 TIGR02418 acolac_catab acetola 96.9 0.0043 1.1E-07 41.5 6.6 23 567-593 421-443 (553)
148 PRK08199 acetolactate synthase 96.9 0.0043 1.1E-07 41.5 6.5 100 427-528 417-529 (553)
149 PRK09628 oorB 2-oxoglutarate-a 96.8 0.0095 2.4E-07 39.0 8.0 111 133-256 71-200 (281)
150 PRK08527 acetolactate synthase 96.8 0.0077 2E-07 39.6 7.2 32 558-590 434-465 (560)
151 PRK07064 hypothetical protein; 96.7 0.0056 1.4E-07 40.6 6.4 33 557-590 423-455 (544)
152 PRK11867 2-oxoglutarate ferred 96.7 0.019 4.8E-07 36.8 9.1 119 122-256 63-200 (280)
153 TIGR03254 oxalate_oxc oxalyl-C 96.7 0.025 6.4E-07 35.9 9.6 33 558-591 435-467 (554)
154 COG1013 PorB Pyruvate:ferredox 96.7 0.011 2.9E-07 38.4 7.8 111 133-256 73-203 (294)
155 PRK06882 acetolactate synthase 96.7 0.0054 1.4E-07 40.7 6.1 26 229-254 134-161 (574)
156 PRK07710 acetolactate synthase 96.7 0.007 1.8E-07 39.9 6.6 32 558-590 443-474 (571)
157 PRK06112 acetolactate synthase 96.7 0.023 5.8E-07 36.2 9.1 42 213-254 127-171 (581)
158 PRK11866 2-oxoacid ferredoxin 96.6 0.024 6.2E-07 36.0 8.7 119 122-256 62-199 (286)
159 PRK07418 acetolactate synthase 96.6 0.028 7.2E-07 35.5 9.0 32 558-590 453-484 (615)
160 TIGR03457 sulphoacet_xsc sulfo 96.5 0.0051 1.3E-07 40.9 5.1 42 213-254 114-157 (579)
161 PRK08978 acetolactate synthase 96.5 0.0072 1.8E-07 39.8 5.7 33 557-590 419-451 (548)
162 PRK05858 hypothetical protein; 96.5 0.0061 1.6E-07 40.3 5.4 21 234-254 142-163 (543)
163 PRK05778 2-oxoglutarate ferred 96.5 0.021 5.2E-07 36.5 7.9 112 133-256 73-202 (306)
164 PRK06965 acetolactate synthase 96.5 0.032 8E-07 35.2 8.7 32 223-254 145-178 (587)
165 PRK08155 acetolactate synthase 96.4 0.0066 1.7E-07 40.1 5.0 33 557-590 437-469 (564)
166 pfam02776 TPP_enzyme_N Thiamin 96.4 0.008 2E-07 39.5 5.4 113 419-531 46-162 (172)
167 PRK11869 2-oxoacid ferredoxin 96.4 0.046 1.2E-06 34.0 9.3 111 133-256 67-196 (284)
168 PRK09259 putative oxalyl-CoA d 96.4 0.018 4.5E-07 37.0 7.0 21 234-254 150-171 (572)
169 PRK06276 acetolactate synthase 96.3 0.027 6.8E-07 35.7 7.8 33 557-590 437-469 (586)
170 PRK08979 acetolactate synthase 96.3 0.0088 2.3E-07 39.2 5.4 33 557-590 439-471 (572)
171 CHL00099 ilvB acetohydroxyacid 96.3 0.016 4.1E-07 37.3 6.3 32 558-590 445-476 (588)
172 PRK06466 acetolactate synthase 96.2 0.0096 2.4E-07 38.9 5.0 42 547-590 432-473 (574)
173 PRK06725 acetolactate synthase 96.2 0.012 3E-07 38.3 5.2 43 546-590 430-472 (570)
174 PRK08327 acetolactate synthase 96.2 0.041 1E-06 34.4 8.0 31 497-527 530-562 (568)
175 PRK06048 acetolactate synthase 96.1 0.015 3.9E-07 37.5 5.6 42 213-254 120-164 (562)
176 cd07034 TPP_PYR_PFOR_IOR-alpha 96.1 0.017 4.3E-07 37.1 5.9 113 411-528 41-158 (160)
177 pfam01855 POR_N domain. This f 96.1 0.018 4.6E-07 36.9 5.8 106 419-528 43-152 (230)
178 PRK06456 acetolactate synthase 96.0 0.047 1.2E-06 34.0 7.6 31 559-590 441-471 (572)
179 PRK11269 glyoxylate carboligas 96.0 0.023 5.7E-07 36.2 5.9 31 223-253 129-161 (591)
180 PRK08273 pyruvate decarboxylas 95.9 0.052 1.3E-06 33.6 7.5 21 234-254 141-161 (597)
181 PRK12474 hypothetical protein; 95.7 0.049 1.2E-06 33.8 6.8 30 497-527 486-515 (518)
182 PRK09107 acetolactate synthase 95.7 0.041 1E-06 34.4 6.3 33 557-590 447-479 (594)
183 PRK07524 hypothetical protein; 95.6 0.024 6.1E-07 36.0 4.8 100 425-527 413-525 (534)
184 COG0028 IlvB Thiamine pyrophos 95.5 0.034 8.6E-07 35.0 5.4 18 236-253 139-157 (550)
185 PRK07586 hypothetical protein; 95.5 0.067 1.7E-06 32.8 6.8 30 497-527 482-511 (514)
186 PRK07449 2-succinyl-6-hydroxy- 95.2 0.27 6.9E-06 28.4 9.2 33 557-590 423-455 (548)
187 cd07037 TPP_PYR_MenD Pyrimidin 95.2 0.057 1.5E-06 33.3 5.7 109 419-529 42-161 (162)
188 PRK08266 hypothetical protein; 95.2 0.051 1.3E-06 33.7 5.3 22 233-254 140-162 (531)
189 cd07035 TPP_PYR_POX_like Pyrim 95.2 0.079 2E-06 32.3 6.3 114 413-530 36-155 (155)
190 COG1165 MenD 2-succinyl-6-hydr 94.8 0.36 9.2E-06 27.5 13.7 44 138-195 61-104 (566)
191 PRK06154 hypothetical protein; 94.7 0.07 1.8E-06 32.7 5.1 120 405-526 406-541 (556)
192 COG0567 SucA 2-oxoglutarate de 94.6 0.4 1E-05 27.2 20.2 178 416-600 631-827 (906)
193 cd07039 TPP_PYR_POX Pyrimidine 94.3 0.096 2.5E-06 31.7 5.0 115 413-531 40-159 (164)
194 PRK08611 pyruvate oxidase; Pro 94.3 0.16 4E-06 30.2 6.0 20 235-254 142-161 (576)
195 TIGR03394 indol_phenyl_DC indo 94.2 0.14 3.5E-06 30.6 5.6 21 234-254 142-162 (535)
196 cd07038 TPP_PYR_PDC_IPDC_like 93.8 0.19 4.9E-06 29.5 5.6 110 419-530 42-162 (162)
197 PRK09124 pyruvate dehydrogenas 93.7 0.36 9.2E-06 27.5 7.0 32 558-590 427-458 (574)
198 PRK06457 pyruvate dehydrogenas 93.5 0.62 1.6E-05 25.8 11.9 21 234-254 138-158 (549)
199 TIGR02176 pyruv_ox_red pyruvat 93.0 0.26 6.7E-06 28.5 5.3 20 573-594 503-522 (1194)
200 PRK06546 pyruvate dehydrogenas 93.0 0.58 1.5E-05 26.0 7.1 21 234-254 139-159 (578)
201 TIGR01318 gltD_gamma_fam gluta 92.2 0.49 1.3E-05 26.5 5.8 79 502-588 330-422 (480)
202 TIGR01504 glyox_carbo_lig glyo 91.1 0.55 1.4E-05 26.2 5.2 24 560-583 522-545 (593)
203 KOG4166 consensus 90.2 0.6 1.5E-05 25.9 4.7 85 161-252 157-246 (675)
204 TIGR02177 PorB_KorB 2-oxoacid: 88.7 0.31 7.9E-06 28.0 2.3 55 133-202 56-113 (302)
205 TIGR01316 gltA glutamate synth 88.5 1.3 3.3E-05 23.5 5.4 15 170-184 54-68 (462)
206 cd03377 TPP_PFOR_PNO Thiamine 88.4 1.3 3.3E-05 23.5 5.4 96 160-256 152-266 (365)
207 TIGR01317 GOGAT_sm_gam glutama 84.8 1.5 3.9E-05 23.0 4.1 22 546-567 409-436 (517)
208 pfam00070 Pyr_redox Pyridine n 81.3 3.6 9.2E-05 20.3 4.9 50 560-612 1-52 (82)
209 COG3960 Glyoxylate carboligase 80.1 1.5 3.8E-05 23.1 2.6 12 411-422 409-420 (592)
210 TIGR01931 cysJ sulfite reducta 80.0 4.2 0.00011 19.8 6.6 20 73-92 69-88 (628)
211 PRK13984 putative oxidoreducta 77.6 4.6 0.00012 19.5 4.5 27 502-528 462-490 (604)
212 TIGR02483 PFK_mixed phosphofru 75.1 5.8 0.00015 18.8 7.9 108 451-590 163-284 (339)
213 PRK12769 putative oxidoreducta 75.1 5.4 0.00014 19.0 4.2 14 503-516 507-520 (654)
214 PRK12831 putative oxidoreducta 73.2 6.4 0.00016 18.5 4.6 12 559-570 385-396 (464)
215 PRK12810 gltD glutamate syntha 71.2 7 0.00018 18.2 4.4 10 559-568 391-400 (472)
216 cd01990 Alpha_ANH_like_I This 70.7 7.2 0.00018 18.1 7.9 57 136-203 9-66 (202)
217 pfam00656 Peptidase_C14 Caspas 69.3 6.6 0.00017 18.4 3.6 72 191-262 2-75 (230)
218 TIGR02371 ala_DH_arch alanine 68.9 5.5 0.00014 19.0 3.1 18 147-170 122-139 (327)
219 pfam10740 DUF2529 Protein of u 66.0 8.9 0.00023 17.5 3.8 36 557-592 81-116 (172)
220 PRK12771 putative glutamate sy 65.8 9 0.00023 17.4 4.4 20 87-109 62-81 (560)
221 TIGR02482 PFKA_ATP 6-phosphofr 65.2 5.4 0.00014 19.0 2.5 36 556-591 211-248 (302)
222 PRK07494 2-octaprenyl-6-methox 64.7 9.4 0.00024 17.3 4.6 16 566-581 294-309 (386)
223 PRK11749 putative oxidoreducta 64.0 9.7 0.00025 17.2 4.6 11 559-569 379-389 (460)
224 TIGR01658 EYA-cons_domain EYA 63.5 5.1 0.00013 19.2 2.1 36 551-597 266-301 (319)
225 COG4032 Predicted thiamine-pyr 63.4 6.2 0.00016 18.6 2.5 99 420-529 50-162 (172)
226 TIGR03385 CoA_CoA_reduc CoA-di 63.2 10 0.00025 17.1 5.8 22 163-188 140-161 (427)
227 PRK12814 putative NADPH-depend 63.1 10 0.00026 17.1 5.8 63 13-110 75-137 (652)
228 PRK06617 2-octaprenyl-6-methox 62.4 10 0.00026 17.0 4.8 15 567-581 290-304 (374)
229 TIGR02875 spore_0_A sporulatio 62.0 10 0.00027 16.9 4.1 25 505-536 211-235 (270)
230 PRK12775 putative trifunctiona 61.9 10 0.00027 16.9 7.5 106 75-206 62-168 (993)
231 PRK06184 hypothetical protein; 61.7 11 0.00027 16.9 4.5 26 410-435 300-325 (503)
232 PRK07208 hypothetical protein; 59.8 11 0.00029 16.7 4.7 11 575-585 370-380 (474)
233 PRK06827 phosphoribosylpyropho 58.0 12 0.00031 16.5 7.2 93 496-599 208-306 (381)
234 PRK08773 2-octaprenyl-3-methyl 57.9 12 0.00031 16.5 4.6 14 567-580 299-312 (392)
235 PRK12778 putative bifunctional 57.9 12 0.00031 16.5 4.4 38 557-597 577-615 (760)
236 TIGR03315 Se_ygfK putative sel 57.7 12 0.00031 16.4 4.6 17 502-518 705-721 (1012)
237 PRK12409 D-amino acid dehydrog 57.3 12 0.00032 16.4 4.3 21 562-582 378-401 (410)
238 PRK11595 gluconate periplasmic 57.1 13 0.00032 16.4 5.8 26 563-591 196-222 (227)
239 PRK06126 hypothetical protein; 56.3 13 0.00033 16.3 4.6 14 581-594 491-504 (545)
240 PRK04926 dgt deoxyguanosinetri 56.2 13 0.00033 16.3 5.1 54 63-145 27-81 (503)
241 pfam01494 FAD_binding_3 FAD bi 56.2 13 0.00033 16.3 4.4 17 566-582 300-316 (349)
242 COG1040 ComFC Predicted amidop 55.8 13 0.00033 16.2 4.5 60 523-585 147-212 (225)
243 PRK09126 hypothetical protein; 55.8 13 0.00034 16.2 4.3 15 567-581 297-311 (392)
244 PRK09853 putative selenate red 55.6 13 0.00034 16.2 4.7 14 503-516 719-732 (1032)
245 TIGR01162 purE phosphoribosyla 55.4 13 0.00034 16.2 5.7 104 561-670 2-143 (159)
246 PRK12770 putative glutamate sy 55.0 14 0.00034 16.1 4.5 34 159-198 16-49 (350)
247 TIGR02025 BchH magnesium chela 54.7 9.6 0.00024 17.2 2.3 60 465-527 652-714 (1384)
248 TIGR01136 cysKM cysteine synth 53.9 10 0.00027 16.9 2.3 40 553-593 263-302 (315)
249 KOG0029 consensus 53.7 14 0.00036 16.0 4.7 17 497-513 275-291 (501)
250 pfam07992 Pyr_redox_2 Pyridine 53.4 14 0.00036 16.0 4.3 11 559-569 224-234 (277)
251 PRK10964 ADP-heptose:LPS hepto 53.4 14 0.00036 16.0 6.3 20 654-673 303-322 (322)
252 PRK01747 mnmC 5-methylaminomet 52.9 15 0.00037 15.9 4.4 18 213-230 205-222 (660)
253 COG1691 NCAIR mutase (PurE)-re 52.8 15 0.00037 15.9 10.4 84 559-646 118-210 (254)
254 TIGR01703 hybrid_clust hydroxy 52.8 8.8 0.00023 17.5 1.8 40 225-264 248-291 (567)
255 PRK07190 hypothetical protein; 51.6 15 0.00039 15.8 4.4 18 410-427 290-307 (480)
256 CHL00194 ycf39 Ycf39; Provisio 50.8 16 0.0004 15.7 3.9 83 566-664 203-286 (319)
257 PRK07364 2-octaprenyl-6-methox 50.6 16 0.0004 15.7 4.6 10 572-581 319-328 (413)
258 TIGR00461 gcvP glycine dehydro 50.3 10 0.00026 17.1 1.8 23 572-594 839-861 (965)
259 PRK08244 hypothetical protein; 50.2 16 0.00041 15.6 4.5 18 410-427 287-304 (494)
260 pfam03853 YjeF_N YjeF-related 50.0 16 0.00041 15.6 6.4 53 139-195 11-63 (170)
261 PRK06183 mhpA 3-(3-hydroxyphen 50.0 16 0.00041 15.6 4.5 18 410-427 303-320 (554)
262 PRK07608 hypothetical protein; 49.6 16 0.00041 15.6 4.7 15 567-581 298-312 (389)
263 TIGR00292 TIGR00292 thiazole b 48.6 17 0.00043 15.4 3.1 21 121-143 21-41 (283)
264 PRK05318 deoxyguanosinetriphos 48.2 17 0.00044 15.4 4.5 55 64-147 21-76 (442)
265 PRK06834 hypothetical protein; 48.2 17 0.00044 15.4 4.6 16 411-426 281-296 (488)
266 PRK08020 ubiF 2-octaprenyl-3-m 48.0 17 0.00044 15.4 5.4 11 651-661 364-374 (391)
267 TIGR03364 HpnW_proposed FAD de 48.0 17 0.00044 15.4 4.0 16 163-178 3-18 (365)
268 pfam04430 DUF498 Protein of un 47.9 13 0.00032 16.4 2.0 37 557-593 52-89 (110)
269 PRK09754 phenylpropionate diox 47.3 18 0.00045 15.3 4.5 28 557-586 357-384 (400)
270 KOG3107 consensus 47.1 18 0.00045 15.3 4.2 19 557-575 421-439 (468)
271 KOG1257 consensus 46.9 18 0.00045 15.3 7.3 38 496-534 416-454 (582)
272 TIGR02733 desat_CrtD C-3',4' d 46.7 18 0.00046 15.2 4.2 32 614-645 420-456 (499)
273 TIGR01060 eno phosphopyruvate 45.3 19 0.00048 15.1 3.8 22 305-326 172-193 (430)
274 PRK11259 solA N-methyltryptoph 45.2 19 0.00048 15.1 4.1 17 567-583 341-357 (377)
275 pfam03698 UPF0180 Uncharacteri 45.2 19 0.00048 15.1 5.3 68 575-671 12-79 (80)
276 pfam11843 DUF3363 Protein of u 44.8 19 0.00049 15.0 4.0 100 477-586 96-203 (312)
277 TIGR00747 fabH 3-oxoacyl-(acyl 44.0 20 0.0005 15.0 2.7 12 610-621 271-282 (329)
278 TIGR02640 gas_vesic_GvpN gas v 43.9 20 0.0005 14.9 3.0 48 107-173 13-60 (265)
279 cd06372 PBP1_GC_G_like Ligand- 43.8 20 0.0005 14.9 6.2 64 160-227 67-141 (391)
280 PRK08010 pyridine nucleotide-d 43.7 20 0.00051 14.9 6.3 27 558-593 335-361 (441)
281 TIGR01421 gluta_reduc_1 glutat 43.4 20 0.00051 14.9 3.6 12 571-582 335-346 (475)
282 COG1635 THI4 Ribulose 1,5-bisp 43.4 20 0.00051 14.9 3.5 11 561-571 169-179 (262)
283 PRK06116 glutathione reductase 43.1 20 0.00052 14.9 7.1 34 634-667 399-436 (450)
284 PRK08294 phenol 2-monooxygenas 42.7 20 0.00052 14.8 4.4 24 411-434 356-379 (634)
285 cd05126 Mth938 Mth938 domain. 41.7 21 0.00054 14.7 3.4 35 556-590 56-92 (117)
286 TIGR02788 VirB11 P-type DNA tr 41.6 18 0.00045 15.3 2.0 36 453-497 149-184 (328)
287 PRK13557 histidine kinase; Pro 41.1 16 0.0004 15.6 1.6 23 73-105 51-73 (538)
288 cd05560 Xcc1710_like Xcc1710_l 40.9 18 0.00045 15.3 1.8 37 557-593 51-88 (109)
289 COG0426 FpaA Uncharacterized f 40.7 22 0.00056 14.6 8.7 94 560-658 248-358 (388)
290 PRK05290 hydroxylamine reducta 40.6 17 0.00043 15.4 1.7 39 226-264 235-273 (540)
291 cd06384 PBP1_NPR_B Ligand-bind 40.6 22 0.00056 14.6 3.8 62 161-224 73-144 (399)
292 cd05125 Mth938_2P1-like Mth938 40.6 17 0.00044 15.4 1.7 37 557-593 53-90 (114)
293 PRK10565 hypothetical protein; 40.5 22 0.00056 14.6 6.9 52 140-196 45-96 (515)
294 pfam11823 DUF3343 Protein of u 40.4 22 0.00056 14.6 3.3 31 563-594 5-35 (73)
295 cd01883 EF1_alpha Eukaryotic e 40.1 22 0.00057 14.5 4.3 33 167-201 111-148 (219)
296 PRK07045 putative monooxygenas 39.4 23 0.00058 14.5 4.3 16 567-582 302-317 (388)
297 PRK03007 deoxyguanosinetriphos 39.3 23 0.00059 14.5 3.3 52 65-145 34-86 (428)
298 cd00248 Mth938-like Mth938-lik 39.0 17 0.00042 15.5 1.5 37 557-593 51-88 (109)
299 PRK13479 2-aminoethylphosphona 39.0 23 0.00059 14.4 7.8 30 212-241 93-127 (368)
300 PRK05569 flavodoxin; Provision 39.0 23 0.00059 14.4 5.2 31 566-596 12-42 (141)
301 COG3770 MepA Murein endopeptid 39.0 22 0.00056 14.6 2.1 58 218-276 58-122 (284)
302 smart00115 CASc Caspase, inter 39.0 23 0.00059 14.4 4.0 54 191-244 10-65 (241)
303 PRK06370 mercuric reductase; V 38.7 23 0.0006 14.4 5.3 14 580-593 363-376 (459)
304 PRK07589 ornithine cyclodeamin 38.4 24 0.0006 14.4 5.5 78 133-229 108-185 (346)
305 PRK01286 deoxyguanosinetriphos 38.1 24 0.00061 14.3 2.4 44 66-138 27-70 (338)
306 PRK12310 hydroxylamine reducta 38.1 20 0.00051 14.9 1.7 40 225-264 124-163 (429)
307 PRK08774 consensus 37.6 24 0.00062 14.3 4.5 11 567-577 300-310 (402)
308 cd00859 HisRS_anticodon HisRS 37.5 24 0.00062 14.3 4.6 32 560-591 3-35 (91)
309 PRK12779 putative bifunctional 37.2 25 0.00063 14.2 4.5 40 559-598 751-791 (944)
310 cd01914 HCP Hybrid cluster pro 37.0 21 0.00053 14.8 1.7 40 225-264 119-158 (423)
311 COG0461 PyrE Orotate phosphori 36.1 12 0.0003 16.6 0.3 31 564-601 122-152 (201)
312 PRK06475 salicylate hydroxylas 36.0 26 0.00066 14.1 4.3 17 566-582 308-324 (400)
313 TIGR01139 cysK cysteine syntha 35.7 26 0.00066 14.1 2.7 39 553-592 262-300 (312)
314 PRK03094 hypothetical protein; 35.4 26 0.00067 14.0 5.3 68 575-671 12-79 (80)
315 TIGR03452 mycothione_red mycot 35.0 27 0.00068 14.0 6.5 13 579-591 358-370 (452)
316 pfam12005 DUF3499 Protein of u 35.0 20 0.0005 15.0 1.3 30 215-244 49-88 (125)
317 TIGR01517 ATPase-IIB_Ca calciu 34.7 27 0.00069 14.0 2.3 21 597-621 615-635 (885)
318 TIGR01369 CPSaseII_lrg carbamo 34.6 27 0.00069 14.0 3.6 19 573-591 596-614 (1089)
319 TIGR01466 cobJ_cbiH precorrin- 34.0 28 0.0007 13.9 3.3 30 556-595 198-227 (254)
320 PRK04965 nitric oxide reductas 33.9 28 0.00071 13.9 5.7 33 548-580 342-375 (378)
321 KOG1250 consensus 33.5 28 0.00072 13.8 7.4 40 490-529 309-349 (457)
322 TIGR00877 purD phosphoribosyla 32.8 29 0.00073 13.8 1.9 62 377-447 222-289 (459)
323 COG5256 TEF1 Translation elong 32.6 29 0.00074 13.7 3.6 41 159-201 110-156 (428)
324 cd02959 ERp19 Endoplasmic reti 32.2 16 0.0004 15.7 0.4 22 235-256 7-28 (117)
325 PRK06847 hypothetical protein; 32.0 30 0.00076 13.7 4.4 18 565-582 297-314 (375)
326 TIGR01420 pilT_fam twitching m 31.8 30 0.00076 13.6 2.8 23 556-578 198-223 (350)
327 TIGR00963 secA preprotein tran 31.6 29 0.00073 13.8 1.7 32 560-592 436-467 (904)
328 PRK05249 soluble pyridine nucl 31.5 30 0.00077 13.6 4.7 14 579-592 364-377 (465)
329 PRK06292 dihydrolipoamide dehy 30.9 31 0.00079 13.5 5.6 11 582-592 363-373 (460)
330 COG1233 Phytoene dehydrogenase 30.7 31 0.00079 13.5 4.5 54 72-132 4-57 (487)
331 PRK11709 putative L-ascorbate 30.4 21 0.00054 14.7 0.9 25 498-522 161-185 (355)
332 KOG0450 consensus 30.3 32 0.00081 13.5 5.9 79 162-243 404-489 (1017)
333 cd06215 FNR_iron_sulfur_bindin 30.3 32 0.00081 13.5 4.9 25 559-583 104-128 (231)
334 PRK08132 hypothetical protein; 30.0 32 0.00081 13.4 4.3 33 559-592 455-487 (549)
335 TIGR02441 fa_ox_alpha_mit fatt 30.0 32 0.00081 13.4 1.9 102 468-591 442-548 (740)
336 PRK10310 galactitol-specific P 30.0 32 0.00081 13.4 6.0 33 561-593 4-40 (94)
337 cd05567 PTS_IIB_mannitol PTS_I 29.9 32 0.00081 13.4 7.1 75 567-655 12-86 (87)
338 cd05566 PTS_IIB_galactitol PTS 29.9 32 0.00081 13.4 3.8 31 562-592 3-37 (89)
339 COG0124 HisS Histidyl-tRNA syn 29.9 32 0.00081 13.4 4.6 43 557-601 334-377 (429)
340 TIGR00874 talAB transaldolase; 29.8 32 0.00082 13.4 1.8 29 224-254 11-40 (324)
341 pfam01918 Alba Alba. Alba is a 29.6 32 0.00083 13.4 4.9 28 556-583 25-52 (67)
342 TIGR02065 ECX1 exosome complex 29.4 28 0.00072 13.8 1.4 13 407-419 108-120 (231)
343 PRK08163 salicylate hydroxylas 29.2 33 0.00084 13.3 4.6 16 566-581 302-317 (396)
344 PRK05976 dihydrolipoamide dehy 29.1 33 0.00084 13.3 5.0 14 579-592 364-377 (464)
345 PRK06416 dihydrolipoamide dehy 28.7 33 0.00085 13.3 4.6 15 579-593 362-376 (462)
346 pfam12500 DUF3706 Protein of u 28.6 34 0.00086 13.3 4.9 41 557-598 99-139 (199)
347 PRK13529 malate dehydrogenase; 28.5 34 0.00086 13.3 5.5 78 496-583 409-497 (563)
348 PRK07308 flavodoxin; Validated 28.4 34 0.00086 13.3 3.9 17 577-593 23-39 (147)
349 pfam04273 DUF442 Putative phos 28.1 34 0.00087 13.2 2.5 45 213-257 48-96 (110)
350 pfam00743 FMO-like Flavin-bind 27.7 35 0.00088 13.2 4.6 14 157-170 104-117 (532)
351 PRK11574 hypothetical protein; 27.5 35 0.00089 13.1 3.4 17 238-254 90-106 (196)
352 TIGR02149 glgA_Coryne glycogen 27.4 35 0.0009 13.1 3.6 38 498-536 197-239 (416)
353 TIGR00580 mfd transcription-re 27.1 36 0.00091 13.1 6.7 45 485-530 681-730 (997)
354 pfam01565 FAD_binding_4 FAD bi 27.0 36 0.00091 13.1 7.0 82 499-587 3-87 (138)
355 cd06451 AGAT_like Alanine-glyo 26.1 37 0.00094 13.0 6.2 28 214-241 89-121 (356)
356 TIGR00464 gltX_bact glutamyl-t 26.0 37 0.00095 13.0 2.8 77 187-263 204-302 (513)
357 COG2873 MET17 O-acetylhomoseri 26.0 34 0.00086 13.3 1.3 26 216-241 120-145 (426)
358 PRK07845 flavoprotein disulfid 26.0 37 0.00095 13.0 5.2 27 558-593 355-381 (467)
359 TIGR00075 hypD hydrogenase exp 25.7 38 0.00096 12.9 8.3 40 161-202 145-185 (384)
360 TIGR03528 2_3_DAP_am_ly diamin 25.6 38 0.00096 12.9 8.0 72 160-247 113-184 (396)
361 TIGR00065 ftsZ cell division p 25.5 38 0.00097 12.9 3.0 15 248-262 68-82 (365)
362 PRK05693 short chain dehydroge 25.5 38 0.00097 12.9 5.0 29 225-253 48-77 (274)
363 PRK06115 dihydrolipoamide dehy 25.3 38 0.00097 12.9 5.5 27 558-593 354-380 (466)
364 PRK03719 ecotin precursor; Pro 25.3 38 0.00096 12.9 1.4 31 193-230 72-102 (167)
365 COG1946 TesB Acyl-CoA thioeste 25.2 38 0.00098 12.9 2.1 30 454-484 89-118 (289)
366 cd06371 PBP1_sensory_GC_DEF_li 24.9 39 0.00099 12.8 3.6 66 161-228 66-137 (382)
367 TIGR01835 HMG-CoA-S_prok hydro 24.8 39 0.00099 12.8 5.6 74 159-243 143-227 (412)
368 PRK02812 ribose-phosphate pyro 24.8 39 0.001 12.8 8.7 92 494-600 177-272 (331)
369 PRK06327 dihydrolipoamide dehy 24.7 39 0.001 12.8 5.4 14 579-592 375-388 (475)
370 PRK07804 L-aspartate oxidase; 24.7 39 0.001 12.8 4.6 16 160-175 163-178 (533)
371 COG1240 ChlD Mg-chelatase subu 24.7 39 0.001 12.8 7.4 25 569-593 197-221 (261)
372 TIGR01326 OAH_OAS_sulfhy O-ace 24.3 35 0.00088 13.2 1.1 26 216-241 115-141 (434)
373 cd01888 eIF2_gamma eIF2-gamma 24.2 40 0.001 12.7 6.3 38 162-201 111-148 (203)
374 cd02960 AGR Anterior Gradient 24.2 36 0.00093 13.0 1.1 23 234-256 10-32 (130)
375 TIGR02886 spore_II_AA anti-sig 24.1 40 0.001 12.7 3.3 70 505-578 22-91 (106)
376 PRK10060 RNase II stability mo 24.1 40 0.001 12.7 6.7 90 570-659 476-578 (663)
377 COG0151 PurD Phosphoribosylami 23.9 40 0.001 12.7 2.7 31 553-583 376-406 (428)
378 TIGR01211 ELP3 histone acetylt 23.9 34 0.00088 13.2 1.0 28 501-530 358-385 (573)
379 pfam00731 AIRC AIR carboxylase 23.8 41 0.001 12.7 7.8 32 562-593 5-38 (150)
380 pfam04395 Poxvirus_B22R Poxvir 23.7 41 0.001 12.7 1.3 12 279-290 377-388 (977)
381 COG0409 HypD Hydrogenase matur 23.6 41 0.001 12.6 7.4 31 164-194 136-167 (364)
382 PRK00054 dihydroorotate dehydr 23.5 41 0.001 12.6 3.4 26 562-588 181-206 (248)
383 PRK13982 bifunctional SbtC-lik 23.5 41 0.001 12.6 7.1 32 561-592 389-421 (476)
384 TIGR01455 glmM phosphoglucosam 23.3 42 0.0011 12.6 7.3 51 130-185 13-64 (450)
385 PRK06467 dihydrolipoamide dehy 23.2 42 0.0011 12.6 5.2 12 581-592 367-378 (472)
386 PRK11829 biofilm formation reg 23.2 42 0.0011 12.6 4.8 177 459-645 404-630 (728)
387 PRK07236 hypothetical protein; 23.1 42 0.0011 12.6 4.5 22 561-582 316-337 (386)
388 TIGR03301 PhnW-AepZ 2-aminoeth 23.0 42 0.0011 12.6 8.2 11 217-227 92-102 (355)
389 COG0654 UbiH 2-polyprenyl-6-me 22.9 42 0.0011 12.6 4.2 15 567-581 295-309 (387)
390 TIGR01501 MthylAspMutase methy 22.8 42 0.0011 12.5 4.9 71 164-242 60-130 (134)
391 PRK13748 putative mercuric red 22.8 42 0.0011 12.5 5.9 32 161-198 99-130 (561)
392 COG0260 PepB Leucyl aminopepti 22.8 42 0.0011 12.5 3.6 35 563-601 378-412 (485)
393 PRK07803 sdhA succinate dehydr 22.6 43 0.0011 12.5 4.3 23 561-583 498-520 (631)
394 TIGR02053 MerA mercuric reduct 22.6 43 0.0011 12.5 4.4 37 635-671 429-469 (494)
395 TIGR02023 BchP-ChlP geranylger 22.5 43 0.0011 12.5 3.6 43 163-212 3-45 (408)
396 PRK05568 flavodoxin; Provision 22.4 43 0.0011 12.5 5.1 26 567-592 13-38 (142)
397 cd04169 RF3 RF3 subfamily. Pe 22.4 43 0.0011 12.5 5.6 35 159-194 96-130 (267)
398 KOG0460 consensus 22.3 43 0.0011 12.5 5.3 38 158-197 141-179 (449)
399 cd02955 SSP411 TRX domain, SSP 22.3 32 0.00083 13.4 0.6 19 238-256 6-24 (124)
400 PRK08246 threonine dehydratase 22.2 43 0.0011 12.5 7.4 27 214-240 104-130 (307)
401 PRK12815 carB carbamoyl phosph 22.2 43 0.0011 12.5 3.9 19 85-106 319-337 (1068)
402 PRK05452 anaerobic nitric oxid 22.2 44 0.0011 12.5 10.6 23 560-582 372-394 (479)
403 COG1440 CelA Phosphotransferas 22.0 44 0.0011 12.4 3.6 40 558-599 48-88 (102)
404 TIGR02415 23BDH acetoin reduct 21.9 44 0.0011 12.4 3.4 47 192-245 27-75 (258)
405 PRK07334 threonine dehydratase 21.9 44 0.0011 12.4 8.0 28 216-244 108-136 (399)
406 COG1433 Uncharacterized conser 21.8 44 0.0011 12.4 2.1 19 573-591 54-72 (121)
407 cd02953 DsbDgamma DsbD gamma f 21.7 35 0.00089 13.2 0.7 17 238-254 2-18 (104)
408 TIGR03035 trp_arylform arylfor 21.7 44 0.0011 12.4 4.6 48 572-621 124-171 (206)
409 PRK07538 hypothetical protein; 21.6 45 0.0011 12.4 4.1 15 567-581 314-328 (413)
410 PRK05883 acyl carrier protein; 21.5 44 0.0011 12.4 1.2 37 73-110 32-72 (85)
411 PRK07049 methionine gamma-lyas 21.5 45 0.0011 12.4 2.4 79 171-257 104-183 (427)
412 TIGR02810 agaZ_gatZ D-tagatose 21.4 42 0.0011 12.6 1.0 20 236-255 26-45 (430)
413 cd06218 DHOD_e_trans FAD/NAD b 21.1 46 0.0012 12.3 5.1 26 562-588 182-207 (246)
414 PRK11921 metallo-beta-lactamas 21.1 46 0.0012 12.3 11.0 95 560-659 249-362 (395)
415 COG1504 Uncharacterized conser 21.1 46 0.0012 12.3 1.2 37 556-594 59-97 (121)
416 PRK06753 hypothetical protein; 21.0 46 0.0012 12.3 4.1 16 566-581 286-301 (373)
417 cd00242 Ecotin Protease Inhibi 21.0 42 0.0011 12.6 1.0 32 193-231 42-73 (136)
418 TIGR00551 nadB L-aspartate oxi 20.9 46 0.0012 12.3 3.4 92 161-286 26-118 (546)
419 TIGR01394 TypA_BipA GTP-bindin 20.9 42 0.0011 12.6 0.9 36 221-256 171-218 (609)
420 PTZ00336 elongation factor 1-a 20.9 39 0.001 12.8 0.8 37 162-200 113-155 (449)
421 PRK05269 transaldolase B; Prov 20.7 47 0.0012 12.2 2.2 29 224-253 12-40 (320)
422 PRK00711 D-amino acid dehydrog 20.5 47 0.0012 12.2 4.2 21 562-582 374-397 (416)
No 1
>TIGR00232 tktlase_bact transketolase; InterPro: IPR005478 Transketolase (EC 2.2.1.1) (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. This group includes two proteins from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. ; GO: 0004802 transketolase activity.
Probab=100.00 E-value=0 Score=1467.05 Aligned_cols=652 Identities=50% Similarity=0.854 Sum_probs=628.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCC
Q ss_conf 99999999999999997388976431368999999843325445778988788779985652018999999970768899
Q gi|254780655|r 20 KKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYALLYLLGYQDVT 99 (673)
Q Consensus 20 ~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~~~l~G~~~~~ 99 (673)
+++++.||.|++|+|+||||||||.+||++++.++||..||++||.||+|+||||||||+||+|+++|++|||+|| |+|
T Consensus 1 k~~~~AiR~L~~D~i~kA~SGHPG~plG~Ap~a~vLw~~fl~~NP~nP~W~NRDRFVLS~GHgSmLlYSlLHL~Gy-Dls 79 (675)
T TIGR00232 1 KKLVNAIRFLAVDAIEKAKSGHPGAPLGAAPIAYVLWTKFLKFNPTNPKWINRDRFVLSAGHGSMLLYSLLHLTGY-DLS 79 (675)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-CCC
T ss_conf 9036899986688898706898871312437999998987148321118566503543025899999999998503-666
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC---CCCCCEEEEEECCCCCCCHHH
Q ss_conf 88986400038879889888899873068886314799999999999985342688---767845999843621143445
Q gi|254780655|r 100 IEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGD---VLIDHYTYVLVGDGCLMEGIS 176 (673)
Q Consensus 100 ~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~---~~~d~~v~~iiGDG~l~eG~~ 176 (673)
+|||++|||++|+||||||+..++|||.|||||||||++|||||+|+|.|++.|++ .++||||||||||||||||++
T Consensus 80 ~EdLk~FRQ~~s~TPGHPE~~~~~Gve~TTGPLGQGianAVGmA~A~~~LAa~fn~~~~~~~DHyTYv~~GDGcLqEGiS 159 (675)
T TIGR00232 80 IEDLKQFRQLHSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAERTLAATFNKPGFEIVDHYTYVIVGDGCLQEGIS 159 (675)
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECEEEEEECCCCCCCCHH
T ss_conf 68882373223017888877788870231187301357799999999999997087969443120789973775566378
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC-CC-CCHHHHHHHHHHHHHCC-CCHHHH
Q ss_conf 5788765220223306999627632232235567821799886414444444-44-40678888888751102-210222
Q gi|254780655|r 177 QEAISFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTLSV-NG-HDHHAITSTLRKAQLSD-KPTMIA 253 (673)
Q Consensus 177 ~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~Gw~~~~v-dG-~d~~~i~~a~~~ak~~~-kP~~I~ 253 (673)
+|+.++||+++|+|||+|||+|++||||.|+.++.||+.+||+|+||+|+++ || ||+++|.+|+++||.++ |||+|+
T Consensus 160 ~E~asLAG~l~LgkLI~lYDsN~IsiDG~~~~~F~Edv~~RFeA~gW~Vl~~~DG~~D~~~I~~Ai~~Ak~~~dKPTlI~ 239 (675)
T TIGR00232 160 YEAASLAGHLKLGKLIVLYDSNRISIDGAVDGSFSEDVKKRFEAYGWEVLEVEDGNHDLEAIAAAIEEAKASKDKPTLIE 239 (675)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 99998876632286689973683564343010010014534410585585405745307999999999873078971689
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC-CCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01334555700047711033437223321256634877785-43897899999-97543335668876424676311111
Q gi|254780655|r 254 CETVIGFGSPNRAGTNKVHGSALGQEEIKATRKALNWDLDP-FFIPDDIMKKW-RLAGLRSSQTRADWQERLSSMKSSIR 331 (673)
Q Consensus 254 ~~T~kG~G~~~~e~~~~~HG~~l~~ee~~~~~k~lg~~~~~-f~ip~~v~~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~ 331 (673)
|+|+||||+|.++|++..||.||+.+|++.+|++++|++.+ |.||++||++| +....++.+...+|++.+..|+.++|
T Consensus 240 v~T~IGfGsp~~~g~~~~HGapL~~~~~~~~~~~~~~~~~~sF~~P~evyd~~~~~v~e~G~~~~~~Wn~~f~~yk~~yP 319 (675)
T TIGR00232 240 VKTTIGFGSPNKEGTEGVHGAPLGKEEVKLTKKNLGWNYNPSFEVPQEVYDHFKKTVKERGAKAEQEWNELFAKYKKKYP 319 (675)
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98775036877788866788898868999999971888777753765688899999998657799999999999988617
Q ss_pred ---HCCCCHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf ---0023001110776302355542000001355431013467888998865543322034555674000266634454-
Q gi|254780655|r 332 ---KEFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISK- 407 (673)
Q Consensus 332 ---~e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vatr~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~- 407 (673)
++|++..++.+|+.|.+.+..+.++....+..+|||++++.+|+.+++.+|+++||||||+.||.|.+++..+|..
T Consensus 320 ~~~~~f~~~~~G~lP~~w~~~~~~f~~~~~~NPA~~ATR~~s~~~Ln~~~~~~p~l~GGSADLa~SN~T~~~~~~df~~~ 399 (675)
T TIGR00232 320 ELAAEFERRLSGELPADWDKELPEFKVKQKANPAKLATRKYSQEVLNAIANVLPELLGGSADLAPSNLTKLKGSGDFQLH 399 (675)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCHHHCEEECCCCCCCCC
T ss_conf 89999999843555235886314532231037455888999999999876315201155301110013350476445435
Q ss_pred ----CCCHHHCCCCCCCHHHHHHHHHHHHHCC-CCCCEECCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCH
Q ss_conf ----3200100325762002356787998728-87622001003555300124541111000013024543333333310
Q gi|254780655|r 408 ----SDFSGRYLHYGVREHAMAAAMNGIALHK-GLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDGPT 482 (673)
Q Consensus 408 ----~~~p~r~i~~GIaE~~~~~~aaGla~~~-g~~p~~~tf~~F~~~~~~~ir~~al~~~~v~~v~th~gi~~G~DGpT 482 (673)
.+|.||||.+||||++|.+|+||||+|| |++||++||++|.+|++++|||+|||++||+||+|||||+|||||||
T Consensus 400 ~~~~~n~~GrYi~~GvREfaMgAI~NGiAlhGag~~p~GgTFL~F~dY~~~AiRLaALm~~~~~~V~THDSIgvGEDGPT 479 (675)
T TIGR00232 400 ENPLGNYAGRYIHYGVREFAMGAIMNGIALHGAGFKPYGGTFLVFVDYARPAIRLAALMKLPVIYVYTHDSIGVGEDGPT 479 (675)
T ss_pred CCCCCCCCCCEEEEEEEECHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECCCCCCCC
T ss_conf 24442346754887323044789999999835886325414678998655899999971789089997440113878884
Q ss_pred HHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHC--CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCC-C
Q ss_conf 100022210111012211211201245777765202--5678349995244443345665532212347379985699-7
Q gi|254780655|r 483 HQPVEHLAALRAIPDLLVLRPADSIETLECWQVALK--EKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTPN-A 559 (673)
Q Consensus 483 Hq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~--~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~~-~ 559 (673)
|||||+|++||.||||.||||||.+|+..+|+.|++ +.++|++|.|+||++|.++......+.+.+|+|++..+++ +
T Consensus 480 HQP~EqLa~LRa~PN~~vwRP~D~~E~aaa~~~a~~kas~~~Pt~L~LtRQnLp~l~~T~~~~~~~~KGgYv~~d~~~~P 559 (675)
T TIGR00232 480 HQPIEQLASLRAIPNLSVWRPADGNETAAAYKYALEKASQDAPTVLILTRQNLPQLERTESSLEKVLKGGYVLKDSKGEP 559 (675)
T ss_pred CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCEEECCCCCC
T ss_conf 77022302332203531623787327899999999962058980799805777776642789998633980787258794
Q ss_pred CEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCCCCCE-EEEECCCCHHHHHHHHCCCC--C
Q ss_conf 29999526889999999999997399439985746581000868899964367977-99972860278999845798--1
Q gi|254780655|r 560 QVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGSSPI-KIAIEAGLRQGWDAFIGSDG--S 636 (673)
Q Consensus 560 dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~-~vtiE~g~~~g~~~~~~~~~--~ 636 (673)
|++||||||+|++|+++++.|.+++|++|||||||+..|++|+.+|+++||+.... +|+||.+....|++|++..+ .
T Consensus 560 d~iliAtGSEV~La~~a~~~L~~~~~kvrVVS~P~~~~f~~Qd~~Y~~svlp~~V~k~~~~Ea~~~~~Wyky~~~~g~H~ 639 (675)
T TIGR00232 560 DIILIATGSEVQLAVEAAKKLAAENIKVRVVSMPSFDLFDKQDEEYRESVLPANVTKRLAIEASAAFEWYKYAGLEGKHA 639 (675)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHCCCHHHCCCCCCEE
T ss_conf 08998527368999999999985498579996586466661228988730720123546653475301111115456400
Q ss_pred EEEECCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 898357767688889999809998999999999848
Q gi|254780655|r 637 FIGMQGFGASGSCDLLYQHFGINAIAIVDMVERKLS 672 (673)
Q Consensus 637 ~igid~Fg~sg~~~el~~~~Gld~~~I~~~i~~~L~ 672 (673)
.+|+++||+|++.++|+++||+++++|+++++++|+
T Consensus 640 ~~G~~~FG~Sa~g~~~~~~fGF~v~nv~~~ak~l~n 675 (675)
T TIGR00232 640 VLGIDSFGESAPGDKVFEKFGFTVENVVAKAKKLLN 675 (675)
T ss_pred EECCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf 551203688785004754148887899999999609
No 2
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=0 Score=1383.19 Aligned_cols=651 Identities=53% Similarity=0.886 Sum_probs=623.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHCC
Q ss_conf 88899999999999999999973889764313689999998433254457789887887799856520189999999707
Q gi|254780655|r 15 YDDDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYALLYLLG 94 (673)
Q Consensus 15 ~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~~~l~G 94 (673)
..+.++++++.||.+++|+|++|||||||++||+++|.++||.++|+|||+||+|+||||||||+||+|+++|+++||+|
T Consensus 2 ~~~~~~~~~naiR~Ls~davqkAnSGHPG~pmG~A~ia~~L~~~~l~~nP~nP~W~nRDRFVLSaGHgSmllYsllhl~G 81 (663)
T COG0021 2 MMKIDKLLANAIRFLSMDAVQKANSGHPGAPMGAADIAYVLWTRFLKHNPDNPKWINRDRFVLSAGHGSMLLYSLLHLTG 81 (663)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCC
T ss_conf 41579999999999999999751389898775488999999998741799999977876278607740599999999806
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCEEEEEECCCCC
Q ss_conf 68899889864000388798898888998730688863147999999999999853426---887678459998436211
Q gi|254780655|r 95 YQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEF---GDVLIDHYTYVLVGDGCL 171 (673)
Q Consensus 95 ~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~---~~~~~d~~v~~iiGDG~l 171 (673)
| |+++|||++|||++|+||||||+.++||||+|||||||||++|||||+|+|+|+++| +.+++||+|||++|||||
T Consensus 82 y-~ls~edLk~FRQ~~SkTpGHPE~~~t~gVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGcl 160 (663)
T COG0021 82 Y-DLSLEDLKNFRQLGSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCL 160 (663)
T ss_pred C-CCCHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHH
T ss_conf 8-887999985045789999998768989857156763015888999999999998761778886434328999747357
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHH-CCCC
Q ss_conf 4344557887652202233069996276322322355678217998864144444-4444406788888887511-0221
Q gi|254780655|r 172 MEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTL-SVNGHDHHAITSTLRKAQL-SDKP 249 (673)
Q Consensus 172 ~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~Gw~~~-~vdG~d~~~i~~a~~~ak~-~~kP 249 (673)
|||+++||.++||++||+|||+|+|+|++||||.++..+++|+++||+|+||+|+ .+||||+++|.+|+++||. ++||
T Consensus 161 mEGvs~EA~slAG~l~L~kLIvlyD~N~IsiDG~~~~~f~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~~~dkP 240 (663)
T COG0021 161 MEGVSHEAASLAGHLKLGKLIVLYDSNDISIDGDTSLSFTEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKASTDKP 240 (663)
T ss_pred HCCCHHHHHHHHHHCCCCCEEEEEECCCCEECCCCCCCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 51618999988734477868999937984232675555536699999854986986018889999999999997467997
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02220133455570004771103343722332125663487778543897899999975433356688764246763111
Q gi|254780655|r 250 TMIACETVIGFGSPNRAGTNKVHGSALGQEEIKATRKALNWDLDPFFIPDDIMKKWRLAGLRSSQTRADWQERLSSMKSS 329 (673)
Q Consensus 250 ~~I~~~T~kG~G~~~~e~~~~~HG~~l~~ee~~~~~k~lg~~~~~f~ip~~v~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 329 (673)
|+|+|+|+||+|+|++||++++||+||++|+++.+|++|+|+.++|+||++|++.|+....++.+.+.+|++++..|.+.
T Consensus 241 tlI~~kTiIG~Gsp~kegt~~~HGapLg~~ev~~~k~~lgw~~~~F~vp~ev~~~~~~~~~~g~~~~~~W~~~~~~y~~~ 320 (663)
T COG0021 241 TLIIVKTIIGKGSPNKEGTHKVHGAPLGEEEVAAAKKALGWEPEPFEVPEEVYAAFRAVEERGAKAEAAWNELFAAYKKK 320 (663)
T ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 38999866405888768876545788887999999998489987544589999999987654356788999999998765
Q ss_pred HH---HCCCCHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11---002300111077630235554200000135543101346788899886554332203455567400026663445
Q gi|254780655|r 330 IR---KEFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAIS 406 (673)
Q Consensus 330 ~~---~e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vatr~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~ 406 (673)
+| +++.+.+++.+|..|.. ..+.+......+|||++++++|+++++.+|++++|||||++||+|.+++...+.
T Consensus 321 ~Pe~~~~~~r~~~~~~p~~~~~----~~~~~~~~~~~~ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~ 396 (663)
T COG0021 321 YPELAAEFERRLNGELPANWAA----FLPKFEANGKSIATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFS 396 (663)
T ss_pred CHHHHHHHHHHHCCCCCHHHHH----HHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 8478999999853547345787----625522566552338999999999975473434667202667643014667778
Q ss_pred CCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHC
Q ss_conf 43200100325762002356787998728876220010035553001245411110000130245433333333101000
Q gi|254780655|r 407 KSDFSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDGPTHQPV 486 (673)
Q Consensus 407 ~~~~p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~tf~~F~~~~~~~ir~~al~~~~v~~v~th~gi~~G~DGpTHq~i 486 (673)
+++|++|||.+||||++|+++++|||+|||++||.+||++|++|++++|||+|||++|++||+|||||+||||||||||+
T Consensus 397 ~~~~~gr~i~~GVREf~M~AimNGialhGg~~pyggTFlvFsdY~r~AiRlaALm~l~~~~V~THDSIgvGEDGPTHqPi 476 (663)
T COG0021 397 PENYAGRYIHFGVREFAMAAIMNGIALHGGFIPYGGTFLVFSDYARPAVRLAALMGLPVIYVFTHDSIGVGEDGPTHQPV 476 (663)
T ss_pred CCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCEEECCEEHHHHHHHHHHHHHHHHHCCCEEEEEECCCEECCCCCCCCCCH
T ss_conf 77878870588558877999987688746862222034021753358799998608981899946712207878877768
Q ss_pred CCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECC--CCCEEEE
Q ss_conf 22210111012211211201245777765202567834999524444334566553221234737998569--9729999
Q gi|254780655|r 487 EHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTP--NAQVTIF 564 (673)
Q Consensus 487 edia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~--~~dv~ii 564 (673)
|+|+.||+|||+.|++|||++|+..+|+.|++++++|++|+++||++|.++... .+.+.+|+|++...+ ++|++||
T Consensus 477 EqLa~LRaiPN~~V~RPaD~~Et~~aw~~Al~~~~gPt~LiltRQnlp~l~~t~--~~~~~kGaYvl~~~~~~~pd~ili 554 (663)
T COG0021 477 EQLASLRAIPNLSVIRPADANETAAAWKYALERKDGPTALILTRQNLPVLERTD--LEGVAKGAYVLKDSGGEDPDVILI 554 (663)
T ss_pred HHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC--CCCCCCCCEEEEECCCCCCCEEEE
T ss_conf 888886526886047328837899999999856789869999667776657775--221257527984057789988999
Q ss_pred ECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCCCCCE-EEEECCCCHHHHHHHHCCCCCEEEECCC
Q ss_conf 526889999999999997399439985746581000868899964367977-9997286027899984579818983577
Q gi|254780655|r 565 SSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGSSPI-KIAIEAGLRQGWDAFIGSDGSFIGMQGF 643 (673)
Q Consensus 565 a~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~-~vtiE~g~~~g~~~~~~~~~~~igid~F 643 (673)
++||+|++|++|++.|+++|+.+|||||||+++|++|+.+|++++|+.... .|+||.|...+|++|++.++.+|||++|
T Consensus 555 AtGSEV~lAv~Aa~~L~~~~i~vrVVS~P~~~~fe~Q~~~Y~~~vL~~~v~~rvaiEa~~~~~W~ky~g~~g~~ig~~~F 634 (663)
T COG0021 555 ATGSEVELAVEAAKELEAEGIKVRVVSMPSFELFEKQDEEYRESVLPGAVTARVAIEAGSALGWYKYVGLDGAVIGMDSF 634 (663)
T ss_pred ECCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHCCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHCCCCCCEEEECCC
T ss_conf 46659999999999998659816999466558887089988776456776643888732236636541888728842567
Q ss_pred CCCCCHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 67688889999809998999999999848
Q gi|254780655|r 644 GASGSCDLLYQHFGINAIAIVDMVERKLS 672 (673)
Q Consensus 644 g~sg~~~el~~~~Gld~~~I~~~i~~~L~ 672 (673)
|.||+.++|+++||||+++|+++++++|+
T Consensus 635 G~Sap~~~l~~~fGft~e~vv~~~~~~l~ 663 (663)
T COG0021 635 GASAPGDELFKEFGFTVENVVAKAKSLLN 663 (663)
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 67898789999959999999999999649
No 3
>PTZ00089 transketolase; Provisional
Probab=100.00 E-value=0 Score=1331.15 Aligned_cols=647 Identities=37% Similarity=0.641 Sum_probs=605.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHCC
Q ss_conf 88899999999999999999973889764313689999998433254457789887887799856520189999999707
Q gi|254780655|r 15 YDDDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYALLYLLG 94 (673)
Q Consensus 15 ~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~~~l~G 94 (673)
++++.+++++.||.|++|||++|||||||++||++||+++||.++|+|||+||+|+||||||||+||+||++|++|+|+|
T Consensus 2 ~~~i~~~~~~~ir~l~~d~v~~a~sGHpG~~l~~a~i~~~L~~~~l~~~p~~p~w~~RDrfvlS~GH~s~~lY~~l~l~g 81 (670)
T PTZ00089 2 DGEIDEKCINEIRMLSAELPLEAKSGHQGAPIGCAPIAHILWAYVMNYYNEDTKWINRDRFILSNGHASALLYTMLYLTE 81 (670)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 71789999999999999999971899986136799999999998603398894999998699755127799999999815
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC---CCCCCEEEEEECCCCC
Q ss_conf 6889988986400038879889888899873068886314799999999999985342688---7678459998436211
Q gi|254780655|r 95 YQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGD---VLIDHYTYVLVGDGCL 171 (673)
Q Consensus 95 ~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~---~~~d~~v~~iiGDG~l 171 (673)
+ ++++|+|++||+++|+||||||+..+||||++|||||||+|+|||||+|+|.++.+++. +++||||||++|||||
T Consensus 82 ~-~~~~e~l~~fr~~~s~~~gHpe~~~~~gve~ttG~LGqG~~~avGmAla~~~l~~~~~~~~~~i~d~~vy~l~GDG~l 160 (670)
T PTZ00089 82 Q-GLSMEDLKNFRQFESLTPGHPEKHITKGVEVTTGPLGQGASNAVGMAIAAHNLADKYNTEEFKIFDNYVYAICGDGCM 160 (670)
T ss_pred C-CCCHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCC
T ss_conf 9-999999997454799999999999998802588871878999999999999987561877666546339999777543
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC-CCC-CHHHHHHHHHHHHHC-CC
Q ss_conf 434455788765220223306999627632232235567821799886414444444-444-067888888875110-22
Q gi|254780655|r 172 MEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTLSV-NGH-DHHAITSTLRKAQLS-DK 248 (673)
Q Consensus 172 ~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~Gw~~~~v-dG~-d~~~i~~a~~~ak~~-~k 248 (673)
|||++|||+++||++||+|||+|+|+|++||||+++..+.+|+.+||+++||+|++| ||| |+++|.+|+++|+.. +|
T Consensus 161 ~EG~~~EA~~~Ag~~~L~nLi~i~D~N~i~idg~~~~~~~~d~~~r~~a~gW~v~~v~~g~~d~~~i~~ai~~Ak~~~~k 240 (670)
T PTZ00089 161 QEGVFCEAASLAGHLGLGRLILLYDDNKITIDGNTDLSFTEDIEKKFEALKWEVRKVEDGNKDFAGILHEIEEAKKNLKQ 240 (670)
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 45899999998646289988999917721146885436566599999980771343366777999999999999855899
Q ss_pred CHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1022201334555700047711033437223321256634877-785438978999999754333566887642467631
Q gi|254780655|r 249 PTMIACETVIGFGSPNRAGTNKVHGSALGQEEIKATRKALNWD-LDPFFIPDDIMKKWRLAGLRSSQTRADWQERLSSMK 327 (673)
Q Consensus 249 P~~I~~~T~kG~G~~~~e~~~~~HG~~l~~ee~~~~~k~lg~~-~~~f~ip~~v~~~~~~~~~~~~~~~~~w~~~~~~~~ 327 (673)
|++|+++|+||+|.+ +||++++||.||++|++..+|+.+||+ .++|++|++|+++|+....++.+.+.+|++.+..|.
T Consensus 241 PtlI~~~T~iG~Gs~-~eGt~~~HG~pLg~eei~~~K~~lG~~p~~~F~ip~~V~~~~~~~~~k~~~~~~~W~~~~~~~~ 319 (670)
T PTZ00089 241 PSLIIVQTACGFGTK-VEGTCKSHGLALKDEDLKKAKEFFGLDPEKKFHISDEVKEFYENIIEKKKENYIKWKKMFCDFS 319 (670)
T ss_pred CEEEEEEEEECCCCC-CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 848996422246557-6787553588777699999999739995557789789999999999878999999999999999
Q ss_pred HHHH---HCCCCHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 1111---0023001110776302355542000001355431013467888998865543322034555674000266634
Q gi|254780655|r 328 SSIR---KEFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKA 404 (673)
Q Consensus 328 ~~~~---~e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vatr~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~ 404 (673)
.+++ .++.+.+++.+|..|...+.. +.......|||++++.+|+.+++.+|++++|||||++||+|.++....
T Consensus 320 ~~~p~~~~e~~~~~~~~lp~~~~~~lp~----~~~~d~~~ATR~asg~~L~~l~~~~p~ligGSADL~~Sn~T~l~~~~~ 395 (670)
T PTZ00089 320 LKYPETAQEIIRRFQKDLPHNWKDALPK----YTPKDAPGATRNLSGIALNCINKIFPELIGGSADLSESNCTALKEEKD 395 (670)
T ss_pred HHCHHHHHHHHHHHHCCCCHHHHHHHHH----HCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf 8777889999998751074569997786----253677531799999999999752885499746656786544446777
Q ss_pred CCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHH
Q ss_conf 45432001003257620023567879987288762200100355530012454111100001302454333333331010
Q gi|254780655|r 405 ISKSDFSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDGPTHQ 484 (673)
Q Consensus 405 ~~~~~~p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~tf~~F~~~~~~~ir~~al~~~~v~~v~th~gi~~G~DGpTHq 484 (673)
|.+++|++|||+||||||+|+++++|||+|+|++||++||++|+||||+||||+|||++|++||+||||++|||||||||
T Consensus 396 ~~~~~~~gr~I~~GIREhaM~ai~NGialhgG~~P~~aTFlvFsdy~~~aiRlaAL~~l~vi~v~THDSi~vGEDGPTHQ 475 (670)
T PTZ00089 396 IKKDSFANKYIRFGVREHGMVAITNGISAYGGFEPFCATFLNFYTYAFGALRLAALSNHHIFCIATHDSVELGEDGPTHQ 475 (670)
T ss_pred CCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEECCCCCCCC
T ss_conf 77778788567862078779999999997389824763089999997768888887568748999625611447788666
Q ss_pred HCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEE----CCCCC
Q ss_conf 00222101110122112112012457777652025678349995244443345665532212347379985----69972
Q gi|254780655|r 485 PVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYIS----TPNAQ 560 (673)
Q Consensus 485 ~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~----~~~~d 560 (673)
|||||++||+||||.|++|||++|+..+|++|+++.++|++|+++||++|.+... ..+.+.+|+|++.. .+.+|
T Consensus 476 pvE~La~LR~iPnl~V~RPaD~~Et~~aw~~al~~~~~P~~l~lsRq~lp~l~~~--~~~~~~~GaYi~~d~~~~~~~~~ 553 (670)
T PTZ00089 476 PIEVLALLRATPNLNIIRPADGNEVSGAYLCHFKNLHTPTLIALCRNKVPHLKNT--QAEQVLKGAYILEDFDNSNDKPK 553 (670)
T ss_pred CHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC--CHHHCCCCCEEEEECCCCCCCCC
T ss_conf 6899999870899679840888999999999986779987999716778776766--44333577789875546689988
Q ss_pred EEEEECCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCHHCCCCHHHHHHHCCC---CCEEEEECCCCHHHHHHHHCCCCC
Q ss_conf 99995268899999999999973-99439985746581000868899964367---977999728602789998457981
Q gi|254780655|r 561 VTIFSSGSELKIAVEACEILSSR-NISTRVVSVPCFELFFEQSDSYRAQIIGS---SPIKIAIEAGLRQGWDAFIGSDGS 636 (673)
Q Consensus 561 v~iia~G~~v~~al~aa~~L~~~-Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~---~~~~vtiE~g~~~g~~~~~~~~~~ 636 (673)
|+|+|+|++|+.|++|+++|+++ ||+++||||||+++|++|+.+|+.++|+. ..+.|+||.+...+|.+|++ .
T Consensus 554 iiliatGSEV~lA~~aa~~L~~~~gi~vrVVSmP~~elF~~Q~~~y~~~vl~~~~~~~~~v~iEa~~~~gw~~~~~---~ 630 (670)
T PTZ00089 554 VILAGCGSELHLCFEAKEILKEQHNLNVRIVSFPSWNLFKKQPEDYQQSVMMHHDAKLPRFYIEPASTHGFDTYFN---V 630 (670)
T ss_pred EEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCC---E
T ss_conf 8999652899999999999855339827999688759998457999986277789984279998244568488759---8
Q ss_pred EEEECCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 898357767688889999809998999999999848
Q gi|254780655|r 637 FIGMQGFGASGSCDLLYQHFGINAIAIVDMVERKLS 672 (673)
Q Consensus 637 ~igid~Fg~sg~~~el~~~~Gld~~~I~~~i~~~L~ 672 (673)
.+|||+||.|||.++|+++||||+++|+++|+++|+
T Consensus 631 ~iGi~~FG~Sap~~~l~~~fG~t~e~I~~~i~~~l~ 666 (670)
T PTZ00089 631 YIGINQFGYSAPKNKIWEHLGFTPENIVQKVLAFIE 666 (670)
T ss_pred EECCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 963487778899899999959899999999999998
No 4
>PRK12753 transketolase; Reviewed
Probab=100.00 E-value=0 Score=1324.65 Aligned_cols=650 Identities=47% Similarity=0.809 Sum_probs=611.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCC
Q ss_conf 99999999999999999738897643136899999984332544577898878877998565201899999997076889
Q gi|254780655|r 19 YKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYALLYLLGYQDV 98 (673)
Q Consensus 19 l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~~~l~G~~~~ 98 (673)
.+++|++||+++++||++|||||||++||++||+++||.++|+|||+||+|++|||||||+||+||++|++|+|+||+ +
T Consensus 3 ~~~~a~~iR~l~~~~v~~a~sGHpg~~l~~a~i~~~L~~~~~~~~p~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~~-~ 81 (662)
T PRK12753 3 RKDLANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWRDFLKHNPTNPTWYDRDRFILSNGHASMLLYSLLHLTGYD-L 81 (662)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCC-C
T ss_conf 799999999999999997389985212679999999999861269889599888869986754029999999981899-9
Q ss_pred CHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC---CCCCCEEEEEECCCCCCCHH
Q ss_conf 988986400038879889888899873068886314799999999999985342688---76784599984362114344
Q gi|254780655|r 99 TIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGD---VLIDHYTYVLVGDGCLMEGI 175 (673)
Q Consensus 99 ~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~---~~~d~~v~~iiGDG~l~eG~ 175 (673)
++|+|++||+++|++|||||++++||||++|||||||+|+|+|||+|+|++++++++ .++||+|||+||||||+||+
T Consensus 82 ~~~~l~~fr~~~s~~~Ghpe~~~~pgve~~tG~lGqGls~a~GmA~a~~~l~~~~n~~~~~~~d~~vy~l~GDG~l~eG~ 161 (662)
T PRK12753 82 PIEELKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPDHEIVDHYTYVFMGDGCLMEGI 161 (662)
T ss_pred CHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHH
T ss_conf 99999975067999999998799998444888718889999999999999766527787655475499997554000479
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHH-CCCCHHHH
Q ss_conf 557887652202233069996276322322355678217998864144444-4444406788888887511-02210222
Q gi|254780655|r 176 SQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTL-SVNGHDHHAITSTLRKAQL-SDKPTMIA 253 (673)
Q Consensus 176 ~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~Gw~~~-~vdG~d~~~i~~a~~~ak~-~~kP~~I~ 253 (673)
+|||+++||++||+|||+|+|+|+|||||+++..+++|+.+||+++||+|+ .|||||+++|.+|+++|+. .+||++|+
T Consensus 162 ~~EA~~~Ag~~~L~nLivi~D~N~isidg~~~~~~~~~~~~rf~a~gw~vi~~idGhd~~~i~~Al~~A~~~~~kPtlI~ 241 (662)
T PRK12753 162 SHEVCSLAGTLGLGKLIGFYDHNGISIDGEVEGWFTDDTAKRFEAYGWHVIHDIDGHDPQAIKEAILEAQSVKDKPSLII 241 (662)
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEECHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99999988760888689998089884677721001366899999649769981488777999999999887269985999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_conf 013345557000477110334372233212566348777854389789999997543335668876424676311111--
Q gi|254780655|r 254 CETVIGFGSPNRAGTNKVHGSALGQEEIKATRKALNWDLDPFFIPDDIMKKWRLAGLRSSQTRADWQERLSSMKSSIR-- 331 (673)
Q Consensus 254 ~~T~kG~G~~~~e~~~~~HG~~l~~ee~~~~~k~lg~~~~~f~ip~~v~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-- 331 (673)
++|+||||+|++||++++||.||+.||+..+|++|+|+.++|++|++|+++|.. ..++....+.|++++..|....|
T Consensus 242 ~kT~IG~GsP~~eG~~~~HG~PLg~eei~~~k~~lg~~~~~F~vp~~v~~~~~~-~~~g~~~~~~w~~~~~~~~~~~P~~ 320 (662)
T PRK12753 242 CRTIIGFGSPNKAGKEESHGAPLGEEEVALTRQKLGWHHPPFEIPKEIYAAWDA-REKGEKAEQAWNEKFAAYKKAYPEL 320 (662)
T ss_pred EECCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCHHH
T ss_conf 854345577132024433677664789999998718998877588999988888-7632778999999999987548577
Q ss_pred -HCCCCHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -0023001110776302355542000001355431013467888998865543322034555674000266634454320
Q gi|254780655|r 332 -KEFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDF 410 (673)
Q Consensus 332 -~e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vatr~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~ 410 (673)
.++.+..++.+|..|...+.............+|||++++.+|+.+++.+|+++++||||++||.+...+...| +++|
T Consensus 321 ~~~~~~~~~~~lp~~~~~~~~~~i~~~~~~~~~iAtR~a~g~~L~~l~~~~p~liggsADL~~S~~t~~~~~~~f-~~~~ 399 (662)
T PRK12753 321 AAEFTRRMSGGLPKDWEKKTQKYINELQANPAKIATRKASQNTLEAYGPLLPELLGGSADLAPSNLTIWSGSKSL-KEDP 399 (662)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCC-CCCC
T ss_conf 899999864899821788899988876305654216665689999999758123067664366554314677433-4378
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 01003257620023567879987288762200100355530012454111100001302454333333331010002221
Q gi|254780655|r 411 SGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHLA 490 (673)
Q Consensus 411 p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~tf~~F~~~~~~~ir~~al~~~~v~~v~th~gi~~G~DGpTHq~iedia 490 (673)
|+|||++|||||+|+++|+|||+++|++||++||++|++|++||||++++|++|+++|+||||+++|||||||||+||++
T Consensus 400 ~gr~~~~GI~E~~m~~~a~Gla~~ggl~P~~~tf~~F~~~~~~~ir~~a~~~~~~i~v~Thd~i~vGeDGpTHQ~ie~la 479 (662)
T PRK12753 400 AGNYIHYGVREFGMTAIANGIAHHGGFVPYTATFLMFVEYARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQPVEQLA 479 (662)
T ss_pred CCCEEEECHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHH
T ss_conf 97626612578879999989987289748876599999986899999987258827999535540468876533078999
Q ss_pred HHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCC-CCEEEEECCHH
Q ss_conf 01110122112112012457777652025678349995244443345665532212347379985699-72999952688
Q gi|254780655|r 491 ALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTPN-AQVTIFSSGSE 569 (673)
Q Consensus 491 ~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~~-~dv~iia~G~~ 569 (673)
+||+||||+|++|||++|++.+|++|++..+||+|||++||++|.++...+....+.+|+|.+...++ +||+||++|+|
T Consensus 480 ~lR~iPn~~v~~PaD~~E~~~a~~~a~~~~~gP~~l~l~R~~~~~~~~~~~~~~~~~~G~yil~~~~~~pdv~iiatGs~ 559 (662)
T PRK12753 480 SLRLTPNFSTWRPCDQVEAAVAWKLAIERHNGPTALILSRQNLAQVERTPEQVKNIARGGYILKDSGGKPDLILIATGSE 559 (662)
T ss_pred HHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHCCCCEEEEEEECCCCCCEEEEECCHH
T ss_conf 99855587799318889999999999962589749998578778768871113215652599950599998999963099
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCCCCC-EEEEECCCCHHHHHHHHCCCCCEEEECCCCCCCC
Q ss_conf 999999999999739943998574658100086889996436797-7999728602789998457981898357767688
Q gi|254780655|r 570 LKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGSSP-IKIAIEAGLRQGWDAFIGSDGSFIGMQGFGASGS 648 (673)
Q Consensus 570 v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~-~~vtiE~g~~~g~~~~~~~~~~~igid~Fg~sg~ 648 (673)
|++|++||++|+++||+++|||+||++|||+|..+|++++++... ..++||+|++.+|.+|++..+.++|||+||+||+
T Consensus 560 v~~Al~Aa~~L~~~gi~~~Vvs~~s~~~~d~q~~~~~~~vl~~~~~~~~~vEag~~~~w~~~~g~~~~~iGid~FG~Sg~ 639 (662)
T PRK12753 560 VEITLQAAEKLTGEGRNVRVVSMPSTDIFDAQDEAYRESVLPSNVTARVAVEAGIADYWYKYVGLKGAIIGMTGFGESAP 639 (662)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCHHHHHHHCCCCCCEEEEEECCCCCHHHHHCCCCCEEEECCCCCCCCC
T ss_conf 99999999999967997899978985487736099997306766754799964740049998089985986688789999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 88999980999899999999984
Q gi|254780655|r 649 CDLLYQHFGINAIAIVDMVERKL 671 (673)
Q Consensus 649 ~~el~~~~Gld~~~I~~~i~~~L 671 (673)
+++|+++||||+++|+++|+++|
T Consensus 640 ~~~L~~~~Glt~e~I~~~~k~~L 662 (662)
T PRK12753 640 ADKLFPFFGFTVENIVAKAKKLL 662 (662)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 99999984989999999999659
No 5
>PRK12754 transketolase; Reviewed
Probab=100.00 E-value=0 Score=1314.58 Aligned_cols=651 Identities=45% Similarity=0.797 Sum_probs=610.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCC
Q ss_conf 99999999999999999973889764313689999998433254457789887887799856520189999999707688
Q gi|254780655|r 18 DYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYALLYLLGYQD 97 (673)
Q Consensus 18 ~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~~~l~G~~~ 97 (673)
..+|||++||.+++++|++|||||||++||+|||+++||+++|++||++|+|++|||||||+|||||++|++|+|+||+
T Consensus 3 ~~~~lA~~iR~l~id~v~~a~~GH~g~~lg~~el~~~L~~~~~~~~p~~p~~~~rDr~v~s~GH~s~~~Y~~l~l~G~~- 81 (663)
T PRK12754 3 SRKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLNHNPTNPSWADRDRFVLSNGHGSMLIYSLLHLTGYD- 81 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCC-
T ss_conf 5999999999999999975389877500679999999999985479789998789849986753027999999981889-
Q ss_pred CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCEEEEEECCCCCCCH
Q ss_conf 998898640003887988988889987306888631479999999999998534268---87678459998436211434
Q gi|254780655|r 98 VTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFG---DVLIDHYTYVLVGDGCLMEG 174 (673)
Q Consensus 98 ~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~---~~~~d~~v~~iiGDG~l~eG 174 (673)
+++|+|++||+++|++|||||+.++||||++|||||||||+|+|||+|+|.++++++ ++++|||||||||||||+||
T Consensus 82 ~~~~~l~~fr~~~s~~~Ghpe~~~~~gve~~tG~lGqgis~a~G~A~a~~~l~~~~~~~~~~~~d~~v~~viGDG~l~eG 161 (663)
T PRK12754 82 LPMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEG 161 (663)
T ss_pred CCHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHCH
T ss_conf 97999997268999999999879999945587880889999999999999976552768765547618999754501058
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC-CCCCCHHHHHHHHHHHHH-CCCCHHH
Q ss_conf 45578876522022330699962763223223556782179988641444444-444406788888887511-0221022
Q gi|254780655|r 175 ISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTLS-VNGHDHHAITSTLRKAQL-SDKPTMI 252 (673)
Q Consensus 175 ~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~Gw~~~~-vdG~d~~~i~~a~~~ak~-~~kP~~I 252 (673)
++|||+|+||+++|+|||+|+|||+||||++++..+++++..||+++||+|++ +||||+++|.+|+++|+. .+||++|
T Consensus 162 ~a~EAl~~Ag~~~l~nLivi~ddN~~sI~g~v~~~~sed~~~RfeA~GW~vi~~idGhd~~~I~~Al~~A~~~~~kPtlI 241 (663)
T PRK12754 162 ISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWFTDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARAVTDKPSLL 241 (663)
T ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99999997451677878999878877557654445204589999861840674458778999999999998606998488
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_conf 201334555700047711033437223321256634877785438978999999754333566887642467631111--
Q gi|254780655|r 253 ACETVIGFGSPNRAGTNKVHGSALGQEEIKATRKALNWDLDPFFIPDDIMKKWRLAGLRSSQTRADWQERLSSMKSSI-- 330 (673)
Q Consensus 253 ~~~T~kG~G~~~~e~~~~~HG~~l~~ee~~~~~k~lg~~~~~f~ip~~v~~~~~~~~~~~~~~~~~w~~~~~~~~~~~-- 330 (673)
+++|+||+|+|+++|++++||.||+.+++..+|++|||+.++|++|++++..|+. ..++......|++++..+....
T Consensus 242 ~~kTviG~G~p~~~g~~~~HG~pl~~~ei~~~k~~lG~~~~~f~ip~~v~~~~~~-~~~g~~~~~~w~~~~~~~~~~~P~ 320 (663)
T PRK12754 242 MCKTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWDA-KEAGQAKESAWNEKFAAYAKAYPQ 320 (663)
T ss_pred EEECCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCHH
T ss_conf 8641125588653555121276666778999999819987776575899987768-886689999889999987652818
Q ss_pred -HHCCCCHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -1002300111077630235554200000135543101346788899886554332203455567400026663445432
Q gi|254780655|r 331 -RKEFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSD 409 (673)
Q Consensus 331 -~~e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vatr~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~ 409 (673)
..++.+...+.+|..|.........++......+|||++++.+|+.+++.+|+++++||||++||.+...+... ++++
T Consensus 321 ~~~~~~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~atr~a~~~~l~~~~~~~p~liggsADL~~st~t~~~g~~~-f~~~ 399 (663)
T PRK12754 321 EAAEFTRRMKGEMPADFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKA-INED 399 (663)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-CCHH
T ss_conf 899999985488970046668888876403765543243118699999986377725672225543333357743-2200
Q ss_pred CHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHCCCC
Q ss_conf 00100325762002356787998728876220010035553001245411110000130245433333333101000222
Q gi|254780655|r 410 FSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHL 489 (673)
Q Consensus 410 ~p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~tf~~F~~~~~~~ir~~al~~~~v~~v~th~gi~~G~DGpTHq~iedi 489 (673)
||+|||+||||||||+++|+|||+++|++||++||++|+||||||||++++|+++++||+||||+++|||||||||+||+
T Consensus 400 ~pgR~~~~GIrE~~m~aia~Gla~~ggl~P~~atf~~F~dra~d~iRl~~~~~~~~~~v~thd~i~vGeDGpTHq~ve~l 479 (663)
T PRK12754 400 AAGNYIHYGVREFGMTAIANGIALHGGFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQV 479 (663)
T ss_pred CCCCEEEHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHH
T ss_conf 68662540257888999999998728972577440889998889999998752785699972563207998631668999
Q ss_pred CHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECC-CCCEEEEECCH
Q ss_conf 10111012211211201245777765202567834999524444334566553221234737998569-97299995268
Q gi|254780655|r 490 AALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTP-NAQVTIFSSGS 568 (673)
Q Consensus 490 a~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~-~~dv~iia~G~ 568 (673)
++||+||||+|++|+|++|+..||++|++..+||++|||+||++|..+...+....+.+|+|.+...+ ++|++||++|+
T Consensus 480 a~lR~iPn~~v~~PaD~~E~~~a~~~al~~~~gP~~i~~~R~~~~~~~~~~~~~~~~~~G~yv~~~~~g~~dv~iia~Gs 559 (663)
T PRK12754 480 ASLRVTPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQERTEEQLANIARGGYVLKDCAGQPELIFIATGS 559 (663)
T ss_pred HHHHHCCCCEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHCCCCCCEEEEEECCCCCCEEEEECCH
T ss_conf 99974479779813999999999999996558976999847887876876200100356329985059999999995258
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCCCC-CEEEEECCCCHHHHHHHHCCCCCEEEECCCCCCC
Q ss_conf 899999999999973994399857465810008688999643679-7799972860278999845798189835776768
Q gi|254780655|r 569 ELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGSS-PIKIAIEAGLRQGWDAFIGSDGSFIGMQGFGASG 647 (673)
Q Consensus 569 ~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~-~~~vtiE~g~~~g~~~~~~~~~~~igid~Fg~sg 647 (673)
||++|++||++|+++||+++|||+||++|||+|+.+|++++++.. ...++||+|++.+|.++++.++.++||++||+||
T Consensus 560 ~v~~Al~Aa~~L~~~gi~~~VVs~~~~~~~d~q~~~~~~~vl~~~~~~~v~ve~g~~~~w~~~~g~~~~~iG~~~FG~Sg 639 (663)
T PRK12754 560 EVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVTARVAVEAGIADYWYKYVGLNGAIVGMTTFGESA 639 (663)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCHHHHHHHHCCCCCCEEEEEECCCHHHHHHHCCCCCEEEECCCCCCCC
T ss_conf 99999999999996799789997898548774649999843687765069996562657999829998098567666889
Q ss_pred CHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 888999980999899999999984
Q gi|254780655|r 648 SCDLLYQHFGINAIAIVDMVERKL 671 (673)
Q Consensus 648 ~~~el~~~~Gld~~~I~~~i~~~L 671 (673)
|+++|+++||||+++|+++|+++|
T Consensus 640 ~~~~l~~~~Glt~e~I~~~vk~lL 663 (663)
T PRK12754 640 PAELLFEEFGFTVDNVVAKAKALL 663 (663)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 999999994989999999999659
No 6
>PRK05899 transketolase; Reviewed
Probab=100.00 E-value=0 Score=1287.83 Aligned_cols=651 Identities=52% Similarity=0.885 Sum_probs=610.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHH
Q ss_conf 68888999999999999999999738897643136899999984332544577898878877998565201899999997
Q gi|254780655|r 13 MKYDDDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYALLYL 92 (673)
Q Consensus 13 ~~~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~~~l 92 (673)
|.+.++|+++|++||+++++||++|||||+|++||+|||+++||++||+|||++|+|++|||||||+|||||++|++|+|
T Consensus 2 ~~~~~~l~~la~~iR~~~~~~v~~a~~GH~g~~lg~~~l~~al~~~~~~~~~~~p~~~~rDr~v~~~GH~~~~~Ya~~~l 81 (661)
T PRK05899 2 MMDMELLQLLANAIRFLSMDAVQKANSGHPGMPMGAADIAYVLWTRFLRHNPKNPKWPNRDRFVLSAGHGSMLLYSLLHL 81 (661)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHH
T ss_conf 88999999999999999999998639997413588999999999863542889998889985999787625699999998
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC---CCCCCEEEEEECCC
Q ss_conf 076889988986400038879889888899873068886314799999999999985342688---76784599984362
Q gi|254780655|r 93 LGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGD---VLIDHYTYVLVGDG 169 (673)
Q Consensus 93 ~G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~---~~~d~~v~~iiGDG 169 (673)
+||+ +++++|++||+++|++|||||+.++||||++|||||||+|+|+|||+|+|+++.++++ .++|++|||+||||
T Consensus 82 ~G~~-~~~~~l~~~r~~~s~~~ghpe~~~~~~v~~stG~lG~gis~a~G~A~a~~~~~~~~~~~~~~~~~~~v~aviGDG 160 (661)
T PRK05899 82 TGYD-LSIEDLKNFRQLGSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAEKLLAARFNRPGHDIVDHYTYVLLGDG 160 (661)
T ss_pred HCCC-CCHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEC
T ss_conf 2899-999999985258999999998689998636888607789999999999999866528775566577499998206
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC-CCCCHHHHHHHHHHHHHC-C
Q ss_conf 11434455788765220223306999627632232235567821799886414444444-444067888888875110-2
Q gi|254780655|r 170 CLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTLSV-NGHDHHAITSTLRKAQLS-D 247 (673)
Q Consensus 170 ~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~Gw~~~~v-dG~d~~~i~~a~~~ak~~-~ 247 (673)
||+||++|||+|+|+++||+|||||+|||+||||++|...+.+++.+||+++||+|++| ||||+++|.+|+++|++. +
T Consensus 161 ~l~eG~a~EAln~a~~~~l~nLIvI~ndN~~sIdg~v~~~~~~~l~~rf~a~Gw~vi~v~DGhD~~~I~~Ai~~Ak~~~~ 240 (661)
T PRK05899 161 CLMEGISHEACSLAGHLKLGNLIVIYDDNRISIDGDTSGWFSEDTKKRFEAYGWHVIEVVDGHDVEAIDAAIEEAKAETD 240 (661)
T ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEEECCCEEECCCCCCCCHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 43567899999864504689889999479700066404210598999999769867843799999999999999986469
Q ss_pred CCHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21022201334555700047711033437223321256634877785438978999999754333566887642467631
Q gi|254780655|r 248 KPTMIACETVIGFGSPNRAGTNKVHGSALGQEEIKATRKALNWDLDPFFIPDDIMKKWRLAGLRSSQTRADWQERLSSMK 327 (673)
Q Consensus 248 kP~~I~~~T~kG~G~~~~e~~~~~HG~~l~~ee~~~~~k~lg~~~~~f~ip~~v~~~~~~~~~~~~~~~~~w~~~~~~~~ 327 (673)
|||+|+++|+||+|+|++|+++++||+||+.|+++.+|++|+++..+|++|++++.+++....++......|.+++..+.
T Consensus 241 kPtvI~v~TiKG~G~p~~e~~~~~Hg~~L~~ee~~~~~~~lg~~~~~f~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 320 (661)
T PRK05899 241 KPTLIIAKTIIGKGSPNKEGTHKVHGAPLGAEEIAAARKALGWDYEPFEVPEEVYAHWRKAKERGAKAEAEWNEKFAAYA 320 (661)
T ss_pred CCEEEEEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 98689998236678732346513325875516899999962999866668868889887520023378999999999853
Q ss_pred HHHHH---CCCCHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 11110---023001110776302355542000001355431013467888998865543322034555674000266634
Q gi|254780655|r 328 SSIRK---EFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKA 404 (673)
Q Consensus 328 ~~~~~---e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vatr~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~ 404 (673)
...+. ++.+......|.. .......+..+|||++|+.+|..+++.+|+++++||||++||++..++...
T Consensus 321 ~~~p~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~Atr~afg~~L~~l~~~~p~ivg~sADl~~St~~~~~~~~~ 392 (661)
T PRK05899 321 AAYPELAAEFERRAGELPAGW--------DAALPEKGKKVATRKASGKALNALAAALPELVGGSADLAGSNNTEIKGSKD 392 (661)
T ss_pred HHCHHHHHHHHHHHCCCCCCH--------HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf 437678999987524667402--------333112465304999999999999854876178704547886644255777
Q ss_pred CCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHH
Q ss_conf 45432001003257620023567879987288762200100355530012454111100001302454333333331010
Q gi|254780655|r 405 ISKSDFSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDGPTHQ 484 (673)
Q Consensus 405 ~~~~~~p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~tf~~F~~~~~~~ir~~al~~~~v~~v~th~gi~~G~DGpTHq 484 (673)
+++++||+||||+|||||+|+++|+|||++|+++||++||++|++|+|||||++|+|++||++++||+|+++|+||||||
T Consensus 393 ~~~e~~~~r~~~~GIaE~~mv~~aaGla~~G~~~P~~~tf~~F~~ra~dqir~~al~~~~v~~v~t~~Gi~vG~DG~THq 472 (661)
T PRK05899 393 FTPDDYSGRYIHYGVREFAMAAIMNGLALHGGFIPFGGTFLVFSDYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTHQ 472 (661)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHH
T ss_conf 67657898732446208999999999985499884012079899998999998876048749999787523489986612
Q ss_pred HCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEE
Q ss_conf 00222101110122112112012457777652025678349995244443345665532212347379985699729999
Q gi|254780655|r 485 PVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTPNAQVTIF 564 (673)
Q Consensus 485 ~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~~~dv~ii 564 (673)
|+|||++||+||||+|++|||++|+..++++++++.++|+|||++|+++|.+.......+.+.+|+|.+..++++||+|+
T Consensus 473 ~i~dla~lr~iPn~~v~~P~d~~E~~~~~~~a~~~~~gp~~ir~~r~~~p~~~~~~~~~~~~~~G~~~~~~~~~~dv~ii 552 (661)
T PRK05899 473 PVEQLASLRAIPNLTVIRPADANETAAAWKLALERKDGPSALVLSRQNLPVLETTEEQDEGVAKGGYVLKDSGGPDVILI 552 (661)
T ss_pred HHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCEEEE
T ss_conf 46789998558996798159999999999999966999789996688778778776514442166189998799988999
Q ss_pred ECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCCC-CCEEEEECCCCHHHHHHHHCCCCCEEEECCC
Q ss_conf 526889999999999997399439985746581000868899964367-9779997286027899984579818983577
Q gi|254780655|r 565 SSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGS-SPIKIAIEAGLRQGWDAFIGSDGSFIGMQGF 643 (673)
Q Consensus 565 a~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~-~~~~vtiE~g~~~g~~~~~~~~~~~igid~F 643 (673)
++|+||++|++|+++|+++||+++|||++|+||||+|+.++++.+|.. +..+||||+++..+|.++++.....+|+|+|
T Consensus 553 a~G~~v~~al~Aa~~L~~~gi~~~Vv~~~s~~pld~~~~~~~~~vl~~~~~~ivtvE~~~~~g~~~~~~~~~~~lGid~F 632 (661)
T PRK05899 553 ATGSEVHLALEAAKELEAEGIKVRVVSMPSTELFDEQDAAYKESVLPAAVTKRVAVEAGVADGWYKYVGLDGAVVGMDTF 632 (661)
T ss_pred EECHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCHHHHHHHCCCCCCCEEEECCCHHHHHHHHCCCCCEEEECCCC
T ss_conf 83299999999999998649986999768872454674989986427678838998488476589872999789864888
Q ss_pred CCCCCHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 67688889999809998999999999848
Q gi|254780655|r 644 GASGSCDLLYQHFGINAIAIVDMVERKLS 672 (673)
Q Consensus 644 g~sg~~~el~~~~Gld~~~I~~~i~~~L~ 672 (673)
|+||++++|+++||||+++|+++|+++|+
T Consensus 633 g~sg~~~~L~~~~gld~~~I~~~~~~~La 661 (661)
T PRK05899 633 GASAPADELFKEFGFTVENIVAAAKELLA 661 (661)
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 89899999999959899999999999749
No 7
>KOG0523 consensus
Probab=100.00 E-value=0 Score=1107.62 Aligned_cols=613 Identities=39% Similarity=0.622 Sum_probs=548.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHC
Q ss_conf 88889999999999999999997388976431368999999843325445778988788779985652018999999970
Q gi|254780655|r 14 KYDDDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYALLYLL 93 (673)
Q Consensus 14 ~~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~~~l~ 93 (673)
.+..+++..+++||.+.++++++++||||++++|.+++...||..+|+|+|.+|+|+||||||||+|||||++|++++|+
T Consensus 5 ~~~~~~~~~~n~lri~si~~~~~a~sghp~s~~s~A~~~~vlf~~~m~~~~~~p~~~n~Drfvls~GHa~~llYa~~~l~ 84 (632)
T KOG0523 5 QDSQILKDAVNNLRILSIDATSAAKSGHPGSPLSLAPIMHVLFFEVMRYNPADPYWFNRDRFVLSNGHACPLLYAHWHLA 84 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 45566688764320566887776426999876320114554425432325678677787617876564313788999986
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf 76889988986400038879889888899873068886314799999999999985342688767845999843621143
Q gi|254780655|r 94 GYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLME 173 (673)
Q Consensus 94 G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~e 173 (673)
|+ +++|+|++|||.+|++||||+. ++|||+++|||||||||+|+|||+++|++.+ .++||||++||||++|
T Consensus 85 G~--~~~edl~~~Rq~~s~t~ghp~~-~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k------~~~rv~~vlGDG~~~e 155 (632)
T KOG0523 85 GY--DREEDLKNFRQIGSDTPGHPEP-ELPGVEVATGPLGQGISNAVGMAYAGKHLGK------ASNRVYCVLGDGCLTE 155 (632)
T ss_pred CC--CCHHHHHHHHHHCCCCCCCCCC-CCCCCEECCCCCCCHHHHHHHHHHHHHHHCC------CCCEEEEEECCCCCCC
T ss_conf 65--7488887777517889998866-6898342137763157777789988876412------4460899976850014
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHH-HHHHCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCHH
Q ss_conf 4455788765220223306999627632232235567821799-88641444444444406788888887511-022102
Q gi|254780655|r 174 GISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYA-RFRASGWNTLSVNGHDHHAITSTLRKAQL-SDKPTM 251 (673)
Q Consensus 174 G~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~~~~~-~~~a~Gw~~~~vdG~d~~~i~~a~~~ak~-~~kP~~ 251 (673)
|++|||+++||+++|||||+|+|+|+++||++++..+.+++.+ ||++|||+++.|||||+++|.+|+.+|+. .+||+.
T Consensus 156 G~~~Ea~s~Ag~l~ldnLVai~D~n~is~~g~t~~~~~~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~~~k~kpt~ 235 (632)
T KOG0523 156 GSVWEAMSLAGHLKLDNLVAIYDNNKISIDGATSLGFDEDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAKSVKGKPTA 235 (632)
T ss_pred CHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCCCCEE
T ss_conf 41888876640225487899972664457898655767427888888748557987485889999998655422688503
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22013345557000477110334372233212566348777854389789999997543335668876424676311111
Q gi|254780655|r 252 IACETVIGFGSPNRAGTNKVHGSALGQEEIKATRKALNWDLDPFFIPDDIMKKWRLAGLRSSQTRADWQERLSSMKSSIR 331 (673)
Q Consensus 252 I~~~T~kG~G~~~~e~~~~~HG~~l~~ee~~~~~k~lg~~~~~f~ip~~v~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 331 (673)
|.++|.||+|.+..+ +.+|||.|+++++++..++.+++|...|.+|++++. .++.+
T Consensus 236 i~~~t~~g~G~~~ig-~~~~Hg~pl~~~~~~~~k~~~~~P~~~~~v~~~~~~-----------------------~p~~~ 291 (632)
T KOG0523 236 IKATTFIGRGSPYIG-SESVHGAPLGEDDVERVKSIKGLPVLIFVVPEKVKL-----------------------YPEKP 291 (632)
T ss_pred EEEEEEEECCCCCCC-CCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCC-----------------------CCCCC
T ss_conf 554555404755435-532258855066899888641876236871611254-----------------------77754
Q ss_pred HCCCCHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 00230011107763023555420000013554310134678889988655433220345556740002666344543200
Q gi|254780655|r 332 KEFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFS 411 (673)
Q Consensus 332 ~e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vatr~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~p 411 (673)
.+..+.....+|..|.+.+. .+...++.+|||+.|+.+|.++++++|++|+++|||.+||.+ ++++++||
T Consensus 292 ~~~~~~~~~~i~~~~~~~~p----~yk~~Dk~~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~st~t------d~~~~~~p 361 (632)
T KOG0523 292 VEDARAISVRIPKIWEKSLP----TYKVGDKAVATRKAFGEALAALAEADPRVIGGSADLKNSTLT------DFFPKRFP 361 (632)
T ss_pred CCCCCCCCCCCCCCCCCCCC----CCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH------HHCCCCCC
T ss_conf 01244655676655323577----445586005479999999999764285648875466787166------54312276
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHCCCCCH
Q ss_conf 10032576200235678799872887622001003555300124541111000013024543333333310100022210
Q gi|254780655|r 412 GRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHLAA 491 (673)
Q Consensus 412 ~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~tf~~F~~~~~~~ir~~al~~~~v~~v~th~gi~~G~DGpTHq~iedia~ 491 (673)
+|||+||||||||+++|+|+|.++.++|||+||+.|++||||||||.++++.++++++||||+++|||||||||+||+++
T Consensus 362 ~R~i~~giaEq~mv~ia~G~a~~g~~~Pf~~tf~~F~trA~dqvr~~a~s~~~v~~v~th~~i~~GeDGPth~~iedla~ 441 (632)
T KOG0523 362 ERFIECGIAEQNMVGIANGIACRGRTIPFCGTFAAFFTRAFDQVRMGALSQANVIYVATHDSIGLGEDGPTHQPIEDLAM 441 (632)
T ss_pred CCEEEEEEEHHHHHHHHHCHHCCCCCCCHHHHHHHHHHHHHHHEEEHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHH
T ss_conf 64278732021167754023117886651387999998753024432231688579997045113688865563889999
Q ss_pred HHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCHHHH
Q ss_conf 11101221121120124577776520256783499952444433456655322123473799856997299995268899
Q gi|254780655|r 492 LRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTPNAQVTIFSSGSELK 571 (673)
Q Consensus 492 lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~~~dv~iia~G~~v~ 571 (673)
||+||||+||+|+|++|+..|++.|++.++.|++++++||++|.++.. ..+.+.+|+|++.. ..+||+||++|++|+
T Consensus 442 frsiPn~~v~~PaD~~et~~av~~Aa~~~~~p~i~~~~r~~~~~~~~~--~~~~igkg~~vl~~-~~~dV~LiG~Gs~v~ 518 (632)
T KOG0523 442 FRSIPNMIVFRPADGNETENAVATAANTKGTPSIRTLSRQNLPIYNNT--EIEEIGKGKYVLQE-VEPDVILIGTGSEVQ 518 (632)
T ss_pred HHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC--CHHHHCCCCEEEEC-CCCCEEEEECCHHHH
T ss_conf 870788547710763789999999870489606998477765656896--55453265079863-888779992658999
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHC-------CCCHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCEEEECCCC
Q ss_conf 9999999999739943998574658100-------086889996436797799972860278999845798189835776
Q gi|254780655|r 572 IAVEACEILSSRNISTRVVSVPCFELFF-------EQSDSYRAQIIGSSPIKIAIEAGLRQGWDAFIGSDGSFIGMQGFG 644 (673)
Q Consensus 572 ~al~aa~~L~~~Gi~~~Vi~~~s~k~ld-------~~~~~~~~~il~~~~~~vtiE~g~~~g~~~~~~~~~~~igid~Fg 644 (673)
+|++||+.|+++||++||||++|||||| .|..+|+..+++.+.....+|..+..+|..|.+.....+++|+||
T Consensus 519 ~cl~AA~~L~e~gi~vrVvd~~~~kplD~~li~~~~q~~~~ri~v~ed~~~~gsi~~~~~a~~g~~~~~~~~~~~~d~~~ 598 (632)
T KOG0523 519 ECLEAAELLSEDGIKVRVVDPFTWKPLDVALIRSLAQSHEYRISVLEDHVPAGSIEVAVTAAWGKYPGILVPSLGVDTFG 598 (632)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCHHHEEEEHHCCCCCCCCEEECCCCCC
T ss_conf 99999999986496389954532000235877655135541799804877776665302102103788631353124677
Q ss_pred CCCCHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 7688889999809998999999999848
Q gi|254780655|r 645 ASGSCDLLYQHFGINAIAIVDMVERKLS 672 (673)
Q Consensus 645 ~sg~~~el~~~~Gld~~~I~~~i~~~L~ 672 (673)
+||++.+||++|||++++|+++++.+|.
T Consensus 599 ~sG~p~ell~~fGit~~~Ia~~a~~~i~ 626 (632)
T KOG0523 599 RSGPPPELLKMFGITARHIAAAALSLIG 626 (632)
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 6799789998729888999999999874
No 8
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=0 Score=1038.35 Aligned_cols=551 Identities=25% Similarity=0.379 Sum_probs=480.8
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECC
Q ss_conf 99887676433468888999999999999999999738897643136899999984332544577898878877998565
Q gi|254780655|r 1 MGHPVGGRNVVLMKYDDDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAG 80 (673)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~G 80 (673)
+|.|.+.|+... ++|++||++||.+++++|++ ||||||++||++||+++||+ +||++ |||||||+|
T Consensus 10 i~~p~dlk~l~~----~~l~~la~~iR~~~i~~v~~-~~GH~g~~lg~~e~~~aL~~---~f~~~------rDr~v~s~G 75 (576)
T PRK05444 10 INSPADLRKLSL----EELPQLADEIREFLIDSVSK-TGGHLGSNLGVVELTVALHY---VFDTP------KDRIIWDVG 75 (576)
T ss_pred CCCHHHHHCCCH----HHHHHHHHHHHHHHHHHHHH-CCCCCCCCHHHHHHHHHHHH---HCCCC------CCCEEEECC
T ss_conf 699899860999----99999999999999999976-58988857479999999985---26999------884898275
Q ss_pred CCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 20189999999707688998898640003887988988889987306888631479999999999998534268876784
Q gi|254780655|r 81 HGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDH 160 (673)
Q Consensus 81 H~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~ 160 (673)
||| |+||+|||| .++|++||+++| ++|||++.+++++.++|||+|||||+|+|||+|.|..+. ||
T Consensus 76 H~~---Y~hk~LtG~----~~~~~~~r~~~~-l~g~~~~~es~~d~~~~G~~g~gls~a~G~A~a~~l~~~-------~~ 140 (576)
T PRK05444 76 HQA---YPHKILTGR----RDRFDTLRQKGG-LSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGE-------DR 140 (576)
T ss_pred HHH---HHHHHHCCC----HHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-------CC
T ss_conf 075---566886275----877631451499-889999987889877878762178899999999984699-------95
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCC-CCCCCCHHHHHHH
Q ss_conf 599984362114344557887652202233069996276322322355678217998864144444-4444406788888
Q gi|254780655|r 161 YTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTL-SVNGHDHHAITST 239 (673)
Q Consensus 161 ~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~Gw~~~-~vdG~d~~~i~~a 239 (673)
+|||+|||||||||++|||+|+||+++ .|+|+|+|||++|||++++..... .+|+++||+|+ .|||||+++|.+|
T Consensus 141 ~v~~~~GDG~l~eGis~EA~s~Ag~~~-~~liii~~DN~isI~~~vg~~~~~---~~Fea~Gw~~i~~iDGhd~~~i~~a 216 (576)
T PRK05444 141 KVVAVIGDGALTGGMAFEALNNAGDLK-SDLIVILNDNEMSISPNVGALSNY---TLFEELGFKYIGPIDGHDLDALVET 216 (576)
T ss_pred EEEEEECCHHHCCHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCCCCCC---HHHHHCCCEEECCCCCCCHHHHHHH
T ss_conf 499998140103314899997555338-876999977982007886543310---1789809948686589899999999
Q ss_pred HHHHHHCCCCHHHHHCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 887511022102220133455570004-7711033437223321256634877785438978999999754333566887
Q gi|254780655|r 240 LRKAQLSDKPTMIACETVIGFGSPNRA-GTNKVHGSALGQEEIKATRKALNWDLDPFFIPDDIMKKWRLAGLRSSQTRAD 318 (673)
Q Consensus 240 ~~~ak~~~kP~~I~~~T~kG~G~~~~e-~~~~~HG~~l~~ee~~~~~k~lg~~~~~f~ip~~v~~~~~~~~~~~~~~~~~ 318 (673)
+++||..+||++|+++|+||+|++.+| +..+|||.+ ||+....
T Consensus 217 l~~ak~~~~P~lI~~kT~~G~G~~~~e~~~~~~Hg~~------------------~f~~~~~------------------ 260 (576)
T PRK05444 217 LKNAKDLKGPVLLHVVTKKGKGYAPAEADPIKYHGVG------------------KFDPETG------------------ 260 (576)
T ss_pred HHHHHHCCCCEEEEEEEECCCCCCCHHCCHHHCCCCC------------------CCCHHHC------------------
T ss_conf 9988866999899999705667781220512225668------------------8794434------------------
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 64246763111110023001110776302355542000001355431013467888998865543322034555674000
Q gi|254780655|r 319 WQERLSSMKSSIRKEFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSELVLEVVNDCLPELIGGSADLTGSNGTK 398 (673)
Q Consensus 319 w~~~~~~~~~~~~~e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vatr~a~g~~l~~i~~~~p~iv~~sADl~~St~~~ 398 (673)
... + ...+ ...+.+|++.|..+++.+|++++++|||..|+++.
T Consensus 261 -----~~~----~--------~~~~--------------------~~~~~~f~~~L~~l~~~~~~iv~itaa~~~~t~l~ 303 (576)
T PRK05444 261 -----KQP----K--------KPGK--------------------PSYTKVFGETLCELAEKDPKIVAITAAMPEGTGLD 303 (576)
T ss_pred -----CCC----C--------CCCC--------------------CCHHHHHHHHHHHHHHHCCCCCEEHHHCCCCCCCC
T ss_conf -----346----7--------7665--------------------06999999999999874302003054214786644
Q ss_pred CCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHH-HHHHHHCCCEEECCCCCCCCC
Q ss_conf 2666344543200100325762002356787998728876220010035553001245-411110000130245433333
Q gi|254780655|r 399 TSQMKAISKSDFSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIR-LASLMGIRVIHVLTHDSIGLG 477 (673)
Q Consensus 399 ~~~~~~~~~~~~p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~tf~~F~~~~~~~ir-~~al~~~~v~~v~th~gi~~G 477 (673)
.|++.||+||||||||||||+++|+|||+ +|++||+++|++|++|+||||+ ++|+|++||+|+++|+|+ +|
T Consensus 304 ------~f~~~~P~R~~~~GIaEqhav~~aaGlA~-~G~~Pf~~~~stFl~Ra~dQi~~d~al~~l~V~~v~d~~Gl-vG 375 (576)
T PRK05444 304 ------EFSKRFPDRYFDVGIAEQHAVTFAAGLAT-EGLKPVVAIYSTFLQRAYDQVIHDVALQNLPVTFAIDRAGL-VG 375 (576)
T ss_pred ------HHHHHCCCCEEECCCHHHHHHHHHHHHHH-CCCCCEEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCC-CC
T ss_conf ------36775876341157457779999745865-69986688821287776999987654127976899607866-78
Q ss_pred CCCCHHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 33310100022210111012211211201245777765202567834999524444334566553221234737998569
Q gi|254780655|r 478 EDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTP 557 (673)
Q Consensus 478 ~DGpTHq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~ 557 (673)
+|||||||+|||++||+||||+|++|||++|+..+|++|++..++|+|||++|++++.... ...+.+.+|++.+++ +
T Consensus 376 eDGpTHq~iedla~lR~iPnl~V~~PaD~~E~~~~~~~Al~~~~gP~~irl~R~~~~~~~~--~~~~~~~~Gk~~vl~-~ 452 (576)
T PRK05444 376 ADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTALAYDDGPTAIRYPRGSGVGVEL--PELEPLPIGKGEVLR-E 452 (576)
T ss_pred CCCCCCCCHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC--CCCCCCCCCEEEEEE-C
T ss_conf 9985100379999852699818996299999999999998578998899942788888787--765434465089996-2
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCCCCCEEEEECCC-----CHHHHHHHHC
Q ss_conf 97299995268899999999999973994399857465810008688999643679779997286-----0278999845
Q gi|254780655|r 558 NAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIEAG-----LRQGWDAFIG 632 (673)
Q Consensus 558 ~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE~g-----~~~g~~~~~~ 632 (673)
|+|++||++|+||++|++|+++|+++||+++||||||+||||+ +++.+++.++..+||+|++ ++..|.+++.
T Consensus 453 G~dv~IiatGs~v~~Al~Aa~~L~~~Gi~~~VVs~~~ikPlD~---e~l~~~~~~~~~ivtvEeh~~~GGlGs~v~e~l~ 529 (576)
T PRK05444 453 GSDVAILAFGTMLAEALEAAERLAAEGISATVVDARFVKPLDE---ELLLELAAKHELLVTVEENAIMGGFGSAVLEFLA 529 (576)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCH---HHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 8978999538799999999999985699879995587788799---9999999548979999389757658999999999
Q ss_pred CCC-------CEEEE-CCCCCCCCHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 798-------18983-5776768888999980999899999999984
Q gi|254780655|r 633 SDG-------SFIGM-QGFGASGSCDLLYQHFGINAIAIVDMVERKL 671 (673)
Q Consensus 633 ~~~-------~~igi-d~Fg~sg~~~el~~~~Gld~~~I~~~i~~~L 671 (673)
.++ ..+|| |+|+.||++++|+++||||+++|+++|+++|
T Consensus 530 ~~g~~~~~~~~~iGi~D~F~~sG~~~~L~~~~Gl~~e~I~~kI~~~L 576 (576)
T PRK05444 530 EHGLLKPVKVLNLGLPDEFIDHGSREELLAELGLDAEGIARRILAWL 576 (576)
T ss_pred HCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 75997797469998488366889999999996939999999999659
No 9
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=0 Score=1010.79 Aligned_cols=553 Identities=20% Similarity=0.290 Sum_probs=473.9
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECC
Q ss_conf 99887676433468888999999999999999999738897643136899999984332544577898878877998565
Q gi|254780655|r 1 MGHPVGGRNVVLMKYDDDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAG 80 (673)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~G 80 (673)
+|+|.+.|+... ++|+++|++||.+++++|+ ++|||||++||+|||+++||+ +|| +| |||||||+|
T Consensus 6 i~~p~dlk~l~~----~~L~~la~~iR~~~i~~v~-~~~GH~g~~lg~~el~~alh~---~f~--~p----~Dr~v~s~G 71 (581)
T PRK12315 6 INSPKDIKKLSL----EELEQLATEIRTALLEKDS-AHGGHVGPNLGVVELTIALHY---VFN--SP----KDKIVWDVS 71 (581)
T ss_pred CCCHHHHHHCCH----HHHHHHHHHHHHHHHHHHH-HCCCCCCCCHHHHHHHHHHHH---HCC--CC----CCCEEEECC
T ss_conf 899899862999----9999999999999999974-438867857689999999998---528--98----887477376
Q ss_pred CCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 20189999999707688998898640003887988988889987306888631479999999999998534268876784
Q gi|254780655|r 81 HGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDH 160 (673)
Q Consensus 81 H~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~ 160 (673)
||| |+||+||||.+ .++++++|| + +.|||.+.+++++.++|||+|||||+|+|||+|++.++. ++
T Consensus 72 H~s---Y~~~~Ltgr~~-~~~~~~~~~---~-l~g~~~~~e~~~d~~~tG~~g~gls~avGmA~A~~~~~~-------~~ 136 (581)
T PRK12315 72 HQS---YPHKMLTGRKE-AFLDPDHYD---D-VTGYTNPEESEHDFFTVGHTSTSIALATGMAKARDLKGE-------KE 136 (581)
T ss_pred CHH---HHHHHHHCCCC-CCCCCHHCC---C-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC-------CC
T ss_conf 178---99999956601-168612128---8-889898988889877877637899999999999997299-------98
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC----------CCHHHHHHHCCCCCCCC-C
Q ss_conf 599984362114344557887652202233069996276322322355678----------21799886414444444-4
Q gi|254780655|r 161 YTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADS----------TDQYARFRASGWNTLSV-N 229 (673)
Q Consensus 161 ~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~----------~~~~~~~~a~Gw~~~~v-d 229 (673)
+|||+||||||+||++|||+|+||+++ +|||+|+|||++|||++++..+. .....+|+++||+|+.+ |
T Consensus 137 ~v~~v~GDG~l~eG~~~EA~~~Ag~~~-~nlivi~ddN~isI~~~~~~~~~~~~~~~~~~~~~~~~~fe~~G~~~~~v~D 215 (581)
T PRK12315 137 NIIAVIGDGSLSGGLAFEGLNNAAELK-SNLIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVED 215 (581)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHCCCC-CCEEEEEECCCEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCEEEECCC
T ss_conf 489998551344016799987634589-8559999768802358730777777887750375501069984986882579
Q ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 4406788888887511022102220133455570-004771103343722332125663487778543897899999975
Q gi|254780655|r 230 GHDHHAITSTLRKAQLSDKPTMIACETVIGFGSP-NRAGTNKVHGSALGQEEIKATRKALNWDLDPFFIPDDIMKKWRLA 308 (673)
Q Consensus 230 G~d~~~i~~a~~~ak~~~kP~~I~~~T~kG~G~~-~~e~~~~~HG~~l~~ee~~~~~k~lg~~~~~f~ip~~v~~~~~~~ 308 (673)
|||+++|.+|+++||..+||++|+++|+||+|++ ..++...||+. .||++.+.
T Consensus 216 Ghd~~~i~~al~~ak~~~~P~~I~v~T~kG~G~~~a~~~~~~~H~~------------------~pf~~~~g-------- 269 (581)
T PRK12315 216 GNDLESLIELFKEVKDIDHPIVLHIHTLKGKGYKPAEENKEAFHWH------------------MPFDLETG-------- 269 (581)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHCCC------------------CCCCCCCC--------
T ss_conf 9999999999999863699979999967863666110357763665------------------67661346--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 43335668876424676311111002300111077630235554200000135543101346788899886554332203
Q gi|254780655|r 309 GLRSSQTRADWQERLSSMKSSIRKEFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSELVLEVVNDCLPELIGGS 388 (673)
Q Consensus 309 ~~~~~~~~~~w~~~~~~~~~~~~~e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vatr~a~g~~l~~i~~~~p~iv~~s 388 (673)
++. . +. ..-....+++..|...++.++++++++
T Consensus 270 ------------------~~~--------~----~~-----------------~~~~~~~~~~~~l~~~~~~~~~ivai~ 302 (581)
T PRK12315 270 ------------------QSK--------V----PA-----------------SGESYSSVVLDYLLKKIEEGKPVVAIN 302 (581)
T ss_pred ------------------CCC--------C----CC-----------------CCCCHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf ------------------545--------6----78-----------------756989999999999987464415421
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHH-HHHHHHCCCEE
Q ss_conf 45556740002666344543200100325762002356787998728876220010035553001245-41111000013
Q gi|254780655|r 389 ADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIR-LASLMGIRVIH 467 (673)
Q Consensus 389 ADl~~St~~~~~~~~~~~~~~~p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~tf~~F~~~~~~~ir-~~al~~~~v~~ 467 (673)
||+.+++++. .|+++||+||||||||||||+++|+|||+ .|++||+++|++|++|+|+||+ ++|+|++||++
T Consensus 303 a~~~~~~gl~------~f~~~~P~R~i~~GIaEq~mv~~a~GlA~-~G~~P~~~~fstFl~ra~dqi~~dial~~lpv~~ 375 (581)
T PRK12315 303 AAIPGVFGLK------EFRKKYPDRYVDVGIAEQHSVAFASGMAA-AGARPVIFVNSTFLQRAYDQLSHDLAINNNPAVM 375 (581)
T ss_pred CCCCCCCCCC------HHHHHCCCCEEECCHHHHHHHHHHHHHHH-CCCEEEEEEECHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 3578765753------13241850167516088899999878975-7996468884423314688998999983699899
Q ss_pred ECCCCCCCCCCCCCHHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 02454333333331010002221011101221121120124577776520256783499952444433456655322123
Q gi|254780655|r 468 VLTHDSIGLGEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCA 547 (673)
Q Consensus 468 v~th~gi~~G~DGpTHq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~ 547 (673)
+++|+|+ |+|||||||+|||++||+||||+|++|||++|++.+|++|+...++|+|||+||+++|... .....+.
T Consensus 376 ~~~~~~i--gedGpTHq~iedia~lR~iPN~~V~~PaD~~E~~~~~~~Al~~~~gP~~iR~pr~~~~~~~---~~~~~~~ 450 (581)
T PRK12315 376 IVFGGSI--SGNSVTHQGSFDIAMISNIPNLVYLAPTSKEELIAMLEWALTQHEHPVAIRVPEHVLESGP---TVDTDYS 450 (581)
T ss_pred EEECCCC--CCCCCCCCCHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC---CCCCCCC
T ss_conf 9961777--8999875147788997256883899319999999999999971699589993787677787---6555555
Q ss_pred CCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCHHCCCCHHHHHHHCCCCCEEEEECCC----
Q ss_conf 473799856997299995268899999999999973-994399857465810008688999643679779997286----
Q gi|254780655|r 548 LGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSR-NISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIEAG---- 622 (673)
Q Consensus 548 ~G~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~-Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE~g---- 622 (673)
.|+|.+++ +|.|++|+++|+||.+|++|+++|+++ ||+++|||++|+||||++ .+.++..++..+||+|++
T Consensus 451 ~g~~~v~~-~G~dv~Iia~Gs~v~~A~~aa~~L~~~~gI~~~Vi~~~~vkPlD~~---~l~~~~~~~~~ivtvEeh~~~G 526 (581)
T PRK12315 451 TLNYEVAK-AGEKVAILALGDFYELGEKVAKKLKEKLGIDATLINPKFITGLDEE---LLENLKEDHELVVTLEDGILDG 526 (581)
T ss_pred CCCEEEEE-CCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH---HHHHHHHCCCEEEEEECCCCCC
T ss_conf 44189975-5898899986077899999999987512998799957724887999---9999982498799992797664
Q ss_pred -CHHHHHHHHCCCCC---EEEE-CCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf -02789998457981---8983-57767688889999809998999999999848
Q gi|254780655|r 623 -LRQGWDAFIGSDGS---FIGM-QGFGASGSCDLLYQHFGINAIAIVDMVERKLS 672 (673)
Q Consensus 623 -~~~g~~~~~~~~~~---~igi-d~Fg~sg~~~el~~~~Gld~~~I~~~i~~~L~ 672 (673)
++..|.++++.++. .+|+ |+|+.||++++|+++||||+++|+++|+++|+
T Consensus 527 GlGs~v~~~l~~~~~~v~~~Gi~d~F~~sg~~~el~~~~Glt~e~I~~~I~~~Lk 581 (581)
T PRK12315 527 GFGEKIARYYGNSDMKVLNYGAKKEFADRVPVEELYKRYHLTPEQIVEDILSVLK 581 (581)
T ss_pred CHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 5899999999767990899835886768899999999949699999999999859
No 10
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=0 Score=997.58 Aligned_cols=558 Identities=23% Similarity=0.355 Sum_probs=477.6
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECC
Q ss_conf 99887676433468888999999999999999999738897643136899999984332544577898878877998565
Q gi|254780655|r 1 MGHPVGGRNVVLMKYDDDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAG 80 (673)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~G 80 (673)
+|.|.+.|+..+ ++|++||++||.+++|+|++ ||||||++||+|||+++||. +||+ | |||||||+|
T Consensus 12 i~~p~dlk~l~~----~~L~~la~~iR~l~id~v~~-~sGHpg~~lG~ael~~aL~~---~f~~--p----RDRfVlS~G 77 (642)
T PRK12571 12 INGPADLRALSD----AELEQLADEIRAEVISAVSE-TGGHLGSSLGVVELTVALHA---VFNT--P----RDKLVWDVG 77 (642)
T ss_pred CCCHHHHHHCCH----HHHHHHHHHHHHHHHHHHHH-CCCCCCCCHHHHHHHHHHHH---HCCC--C----CCCEEEECC
T ss_conf 699899872999----99999999999999999976-58978866679999999987---2499--9----887798485
Q ss_pred CCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 20189999999707688998898640003887988988889987306888631479999999999998534268876784
Q gi|254780655|r 81 HGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDH 160 (673)
Q Consensus 81 H~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~ 160 (673)
||| |++|+|+||. |+|++|||+|| ++|||++.++++++++|||+|||||+|+|||+|+++++. ||
T Consensus 78 H~S---Y~~l~LtG~~----d~lk~fRq~gs-~tGhp~~~et~~~~~~~G~~g~gls~AvGmA~A~~l~~~-------d~ 142 (642)
T PRK12571 78 HQC---YPHKLLTGRR----DQFRTLRQKGG-LSGFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQP-------DG 142 (642)
T ss_pred HHH---HHHHHHHCCH----HHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-------CC
T ss_conf 688---9999986888----78751760699-999786998898987877653588999999999985699-------97
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC------------------CCH--------
Q ss_conf 599984362114344557887652202233069996276322322355678------------------217--------
Q gi|254780655|r 161 YTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADS------------------TDQ-------- 214 (673)
Q Consensus 161 ~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~------------------~~~-------- 214 (673)
+|||+|||||||||++|||+|+||+++ +|||+|+|||++|||++++.... .++
T Consensus 143 ~v~~i~GDG~LmEGvs~EA~slAGhl~-~kLIvi~DDN~iSIdg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (642)
T PRK12571 143 DVVAVIGDGSLTAGMAYEALNNAGAAD-RRLIVILNDNEMSIAPPVGALANYLSTLRSSDPFATLRAIAKGVEERLPGPL 221 (642)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHCCCC-CCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHH
T ss_conf 089997571444058999998514036-8769999438744277731788999998834408999999999986064468
Q ss_pred -----------------HHHHHHCCCCCCC-CCCCCHHHHHHHHHHHHH-CCCCHHHHHCCCCCCCCCCCCCCC-CCCCC
Q ss_conf -----------------9988641444444-444406788888887511-022102220133455570004771-10334
Q gi|254780655|r 215 -----------------YARFRASGWNTLS-VNGHDHHAITSTLRKAQL-SDKPTMIACETVIGFGSPNRAGTN-KVHGS 274 (673)
Q Consensus 215 -----------------~~~~~a~Gw~~~~-vdG~d~~~i~~a~~~ak~-~~kP~~I~~~T~kG~G~~~~e~~~-~~HG~ 274 (673)
...|+++||.+.. +||||++++.++++++|. .++|++|++.|.||+|++..+... ++|+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~e~~g~~~~~p~dghd~~~~~~~l~~ak~~~~~P~~i~~~t~kg~g~~~ae~~~~~~h~~ 301 (642)
T PRK12571 222 RDGARRARELVTGMPGGGTLFEELGFTYVGPIDGHDMEALLSVLRAARARATGPVLVHVVTEKGKGYAPAEDEADKYHAV 301 (642)
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCHHHCCHHHHHHH
T ss_conf 99999999875337876506787387766787877899999999999972599857520147633775311397764330
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHC
Q ss_conf 37223321256634877785438978999999754333566887642467631111100230011107763023555420
Q gi|254780655|r 275 ALGQEEIKATRKALNWDLDPFFIPDDIMKKWRLAGLRSSQTRADWQERLSSMKSSIRKEFERRFSDALPDCFDNAFINLK 354 (673)
Q Consensus 275 ~l~~ee~~~~~k~lg~~~~~f~ip~~v~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~e~~~~~~~~~p~~~~~~~~~~~ 354 (673)
. +|+.. . + .|..
T Consensus 302 ~------------------~~~~~-------------------------------~---------~-~~~~--------- 313 (642)
T PRK12571 302 G------------------KFDVA-------------------------------T---------G-LQKK--------- 313 (642)
T ss_pred C------------------CCCCC-------------------------------C---------C-CCCC---------
T ss_conf 5------------------43301-------------------------------3---------5-6444---------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 00001355431013467888998865543322034555674000266634454320010032576200235678799872
Q gi|254780655|r 355 KKFEHSKPMIATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAMAAAMNGIALH 434 (673)
Q Consensus 355 ~~~~~~~~~vatr~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~p~r~i~~GIaE~~~~~~aaGla~~ 434 (673)
......+.+.++++.|..+++.+|++++++|||.+|+++. .+.+.||+|||++|||||+|+++++||| +
T Consensus 314 ----~~~~~~~~~~~~g~~l~~la~~~~~lv~~sadl~~stgl~------~f~~~~p~R~~~~GIrE~~m~a~a~GlA-~ 382 (642)
T PRK12571 314 ----SKPNAPSYTSVFGDELVKEAEEDSDIVAITAAMPSGTGLD------KLQKRFPNRVFDVGIAEQHAVTFAAGLA-A 382 (642)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCC------CHHCCCCCCCCCCCHHHHHHHHHHHHHH-H
T ss_conf ----6787622999999999999974110102000367777761------0101588655552455678999963476-4
Q ss_pred CCCCCEECCCHHHHHHHHHHHHH-HHHHHCCCEEECCCCCCCCCCCCCHHHHCCCCCHHHHHCCCCEEEECCHHHHHHHH
Q ss_conf 88762200100355530012454-11110000130245433333333101000222101110122112112012457777
Q gi|254780655|r 435 KGLAPYSGTFMVFSDYSRPAIRL-ASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECW 513 (673)
Q Consensus 435 ~g~~p~~~tf~~F~~~~~~~ir~-~al~~~~v~~v~th~gi~~G~DGpTHq~iedia~lr~iPnl~v~~P~d~~E~~~~~ 513 (673)
+|++||++||++|++|+|+|||+ +|||++||+|++||+|+ +|||||||||+|||++||+||||+|++|+|++|++.+|
T Consensus 383 ~G~~P~~~tf~~F~~ra~~qi~~~~al~~lpv~~v~~~~Gl-vGeDGpTHq~iedla~lR~iPnl~V~~PaD~~E~~~a~ 461 (642)
T PRK12571 383 AGLKPFCAIYSTFLQRGYDQVLHDVALQKLPVRFVIDRAGL-VGADGATHAGMFDMAFLTCLPNLRVMAPADEAELRHML 461 (642)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEECCCC-CCCCCCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHH
T ss_conf 69962899967445543788763255159866999966732-47998764243778875479981899129999999999
Q ss_pred HHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 65202567834999524444334566553221234737998569972999952688999999999999739943998574
Q gi|254780655|r 514 QVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVP 593 (673)
Q Consensus 514 ~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~ 593 (673)
++|+++++||++||++||++|..... .....+..|++.+++.+++|++||++|+||+.|++|+++|+++||+++||||+
T Consensus 462 ~~al~~~~gP~~i~l~R~~~~~~~~~-~~~~~~~~g~~~~~~~g~~dv~lia~Gs~v~~Al~Aa~~L~~~Gi~~~Vv~~~ 540 (642)
T PRK12571 462 RTAVAHDDGPIAVRYPRGEGVGVEIP-AVGRVLGIGKGRVPREGRPDVAILSVGAHLHECLEAAELLEAEGISVTVADAR 540 (642)
T ss_pred HHHHHCCCCCEEEEECCCCCCCCCCC-CCCCCCCCCEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 99986689988999527878887766-42111356438994279999899986099999999999998669986998167
Q ss_pred CCCHHCCCCHHHHHHHCCCCCEEEEECCCCHHHHHHH----HCCC--------CCEEEE-CCCCCCCCHHHHHHHCCCCH
Q ss_conf 6581000868899964367977999728602789998----4579--------818983-57767688889999809998
Q gi|254780655|r 594 CFELFFEQSDSYRAQIIGSSPIKIAIEAGLRQGWDAF----IGSD--------GSFIGM-QGFGASGSCDLLYQHFGINA 660 (673)
Q Consensus 594 s~k~ld~~~~~~~~~il~~~~~~vtiE~g~~~g~~~~----~~~~--------~~~igi-d~Fg~sg~~~el~~~~Gld~ 660 (673)
|++|+|+ .++.++...++.+|++|+++..||+++ ++.. ...+|+ |+||.||++++|+++||||+
T Consensus 541 ~~kp~D~---~~~~~~~~~~~~vv~~E~~~~gG~g~~v~~~~~~~g~~~~~~~~~~~Gi~d~Fg~sa~~~~l~~~~Glt~ 617 (642)
T PRK12571 541 FVKPLDE---ALIAQLARRHRVLVTVEDGAMGGFGAHVLHHLADAGLLDGGLKLRTLGLPDRFIDHASPEEMYAEAGLTA 617 (642)
T ss_pred CCCCCCH---HHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCH
T ss_conf 3787799---9999997009889999078512389999999997498778973899835887678499999999979399
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999999848
Q gi|254780655|r 661 IAIVDMVERKLS 672 (673)
Q Consensus 661 ~~I~~~i~~~L~ 672 (673)
++|+++|+++|+
T Consensus 618 e~Iv~~i~~~L~ 629 (642)
T PRK12571 618 PDIAAQVTGALA 629 (642)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999986
No 11
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=100.00 E-value=0 Score=928.02 Aligned_cols=559 Identities=23% Similarity=0.352 Sum_probs=481.0
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECC
Q ss_conf 99887676433468888999999999999999999738897643136899999984332544577898878877998565
Q gi|254780655|r 1 MGHPVGGRNVVLMKYDDDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAG 80 (673)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~G 80 (673)
+++|.+.|+... ++|++||.|||..+++.|++ +|||+|++||+||||+|||+ +||++ +|+||||+|
T Consensus 8 i~~P~dLk~ls~----~eL~~La~EiR~~li~~vS~-~GGHlgsnLGvVELTiALH~---VF~sP------~D~~IwDVg 73 (627)
T COG1154 8 INSPADLKKLSI----EELPQLADEIREFLLEVVSA-TGGHLGSNLGVVELTIALHY---VFDSP------KDKLIWDVG 73 (627)
T ss_pred CCCHHHHHHCCH----HHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCHHHHHHHHHH---HHCCC------CCCEEEECC
T ss_conf 489899864799----99999999999999998622-78864778670034477788---71798------787677567
Q ss_pred CCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 20189999999707688998898640003887988988889987306888631479999999999998534268876784
Q gi|254780655|r 81 HGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDH 160 (673)
Q Consensus 81 H~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~ 160 (673)
||+ |+||.||||+ |++.++||.++ ++|||.+.|++++.|.+||++++||+|+|||.|.+..+ + ++
T Consensus 74 HQa---YpHKiLTGR~----e~f~tlRq~~G-lsGf~~r~ESe~D~f~~GHsSTSiSaalG~A~A~~~~g-~------~~ 138 (627)
T COG1154 74 HQA---YPHKILTGRR----EQFDTLRQKDG-LSGFPKREESEHDWFGVGHSSTSISAALGMAKARDLKG-E------DR 138 (627)
T ss_pred CCC---CHHHHHCCCH----HHCCHHHHCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC-C------CC
T ss_conf 555---3067761865----53231443299-78999965677766355745878988766899887429-9------88
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC---------------CCH-----------
Q ss_conf 599984362114344557887652202233069996276322322355678---------------217-----------
Q gi|254780655|r 161 YTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADS---------------TDQ----------- 214 (673)
Q Consensus 161 ~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~---------------~~~----------- 214 (673)
+|+||||||+|+.||+|||||+||...-.|+|||+|||+|||+.+++.... +..
T Consensus 139 ~vvaVIGDGAlt~GmA~EALN~ag~~~~~~~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~ 218 (627)
T COG1154 139 NVVAVIGDGALTGGMAFEALNNAGADLKSNLIVILNDNEMSISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPL 218 (627)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHH
T ss_conf 37999777633001799998533230489989998079864587754799999998626357788887799998515378
Q ss_pred -----------H------HHHHHCCCCCCC-CCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf -----------9------988641444444-44440678888888751102210222013345557000477-1103343
Q gi|254780655|r 215 -----------Y------ARFRASGWNTLS-VNGHDHHAITSTLRKAQLSDKPTMIACETVIGFGSPNRAGT-NKVHGSA 275 (673)
Q Consensus 215 -----------~------~~~~a~Gw~~~~-vdG~d~~~i~~a~~~ak~~~kP~~I~~~T~kG~G~~~~e~~-~~~HG~~ 275 (673)
+ ..|+.+||+|+. |||||+++|..+|+++|+.++|+++|+.|.||+|++..|.+ .+|||..
T Consensus 219 ~~~~~r~e~~~K~l~~~~~lFeelGf~YiGPiDGHni~~Li~~Lk~~kd~~gPvllHv~T~KGKGY~pAE~d~~~~H~v~ 298 (627)
T COG1154 219 KRFAKRAEESIKGLLVPGTLFEELGFNYIGPIDGHNLEELIPTLKNAKDLKGPVLLHVVTKKGKGYKPAEEDPIKYHGVG 298 (627)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHCCHHHCCCCC
T ss_conf 99999999753025673025898187467885877899999999998537998899999658888882354965351777
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHCC
Q ss_conf 72233212566348777854389789999997543335668876424676311111002300111077630235554200
Q gi|254780655|r 276 LGQEEIKATRKALNWDLDPFFIPDDIMKKWRLAGLRSSQTRADWQERLSSMKSSIRKEFERRFSDALPDCFDNAFINLKK 355 (673)
Q Consensus 276 l~~ee~~~~~k~lg~~~~~f~ip~~v~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~e~~~~~~~~~p~~~~~~~~~~~~ 355 (673)
||+.++ .+..+.
T Consensus 299 ------------------~f~~~~---------------------------------------tg~~~~----------- 310 (627)
T COG1154 299 ------------------PFDPIE---------------------------------------TGQSKK----------- 310 (627)
T ss_pred ------------------CCCCCC---------------------------------------CCCCCC-----------
T ss_conf ------------------877433---------------------------------------576677-----------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 00013554310134678889988655433220345556740002666344543200100325762002356787998728
Q gi|254780655|r 356 KFEHSKPMIATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAMAAAMNGIALHK 435 (673)
Q Consensus 356 ~~~~~~~~vatr~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~p~r~i~~GIaE~~~~~~aaGla~~~ 435 (673)
..+...+..+.|+.+|..+++.++++|+.+|.+...++. .. |.++||+|||||||||||++++|+|||. +
T Consensus 311 ---~~~~~~sys~vf~~~L~~~a~~d~~ivaITaAM~~gtGL-----~~-F~~~fP~R~fDVGIAEQHAVT~AAGlA~-~ 380 (627)
T COG1154 311 ---SKPSAPSYTKVFGDTLCELAAKDEKIVAITAAMPEGTGL-----VK-FSKKFPDRFFDVGIAEQHAVTFAAGLAA-E 380 (627)
T ss_pred ---CCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCH-----HH-HHHHCCHHHEEHHHHHHHHHHHHHHHHH-C
T ss_conf ---788888878999999999984189759983577788776-----99-9885845333023568889999999985-7
Q ss_pred CCCCEECCCHHHHHHHHHH-HHHHHHHHCCCEEECCCCCCCCCCCCCHHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHH
Q ss_conf 8762200100355530012-454111100001302454333333331010002221011101221121120124577776
Q gi|254780655|r 436 GLAPYSGTFMVFSDYSRPA-IRLASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQ 514 (673)
Q Consensus 436 g~~p~~~tf~~F~~~~~~~-ir~~al~~~~v~~v~th~gi~~G~DGpTHq~iedia~lr~iPnl~v~~P~d~~E~~~~~~ 514 (673)
|++||+++|+||+||+||| +||+|+|++||+|+.+++|+ +|+||+||||++|+++||+||||.|+.|+|++|+..|++
T Consensus 381 G~kPvvaIYSTFLQRAYDQliHDvaiqnLPV~faIDRAGi-vG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el~~ml~ 459 (627)
T COG1154 381 GMKPVVAIYSTFLQRAYDQLIHDVAIQNLPVTFAIDRAGI-VGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQMLY 459 (627)
T ss_pred CCCCEEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCC-CCCCCCCCCCHHHHHHHHCCCCCEEECCCCHHHHHHHHH
T ss_conf 9998899923778777888999988606985999846764-589998655188899873489857866799999999999
Q ss_pred HHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 52025678349995244443345665532212347379985699729999526889999999999997399439985746
Q gi|254780655|r 515 VALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPC 594 (673)
Q Consensus 515 ~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s 594 (673)
||+.++++|++|||||++.+....... .+.+.+|+|+++++ |.||+||++|.++..|++||+.|.+.||+++|||+++
T Consensus 460 ta~~~~~gP~AiRyPrg~~~~~~~~~~-~~~~~~Gk~~i~~~-G~~vail~~G~~~~~al~vae~L~~~Gi~~TVvd~rf 537 (627)
T COG1154 460 TALAQDDGPVAIRYPRGNGVGVILTPE-LEPLEIGKGELLKE-GEKVAILAFGTMLPEALKVAEKLNAYGISVTVVDPRF 537 (627)
T ss_pred HHHHCCCCCEEEEECCCCCCCCCCCCC-CCCCCCCCEEEEEC-CCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEECCEE
T ss_conf 998647887489946888888776655-55134653688725-8808999442226899999999986398737886712
Q ss_pred CCHHCCCCHHHHHHHCCCCCEEEEECCC-----CHHHHHHHHCCCC-----CEEEE-CCCCCCCCHHHHHHHCCCCHHHH
Q ss_conf 5810008688999643679779997286-----0278999845798-----18983-57767688889999809998999
Q gi|254780655|r 595 FELFFEQSDSYRAQIIGSSPIKIAIEAG-----LRQGWDAFIGSDG-----SFIGM-QGFGASGSCDLLYQHFGINAIAI 663 (673)
Q Consensus 595 ~k~ld~~~~~~~~~il~~~~~~vtiE~g-----~~~g~~~~~~~~~-----~~igi-d~Fg~sg~~~el~~~~Gld~~~I 663 (673)
+||+|+ +++.++...+..+||+|++ .++.+.++++..+ ..+|+ |.|..||++++++..+|||+++|
T Consensus 538 vkPlD~---~ll~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~~~~~~~v~~lglpd~fi~hg~~~el~~~~gLd~~~i 614 (627)
T COG1154 538 VKPLDE---ALLLELAKSHDLVVTLEENVVDGGFGSAVLEFLAAHGILVPVLNLGLPDEFIDHGSPEELLAELGLDAEGI 614 (627)
T ss_pred CCCCCH---HHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCHHHHHHHCCCCHHHH
T ss_conf 677799---99999986568699996373146378999999996499873377138767643699999998839998999
Q ss_pred HHHHHHHHC
Q ss_conf 999999848
Q gi|254780655|r 664 VDMVERKLS 672 (673)
Q Consensus 664 ~~~i~~~L~ 672 (673)
+++|+++|+
T Consensus 615 ~~~i~~~l~ 623 (627)
T COG1154 615 ARRILEWLK 623 (627)
T ss_pred HHHHHHHHH
T ss_conf 999999875
No 12
>pfam00456 Transketolase_N Transketolase, thiamine diphosphate binding domain. This family includes transketolase enzymes EC:2.2.1.1. and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit EC:1.2.4.4. Both these enzymes utilize thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.
Probab=100.00 E-value=0 Score=716.37 Aligned_cols=324 Identities=52% Similarity=0.957 Sum_probs=310.7
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCC
Q ss_conf 99999999999999999738897643136899999984332544577898878877998565201899999997076889
Q gi|254780655|r 19 YKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYALLYLLGYQDV 98 (673)
Q Consensus 19 l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~~~l~G~~~~ 98 (673)
.+++++.||+++++||.+|||||||++||+++++++||.++|+|||+||+|++|||||+|+||+||++|+++++.|| ++
T Consensus 2 ~~~~~~~iR~l~~d~v~~A~sGHpG~~ls~adi~~~L~~~~l~~~p~~p~w~~RDRfvLS~GH~s~~lYa~L~l~G~-~~ 80 (333)
T pfam00456 2 DKRAANAIRALAMDAVEKAGSGHPGAPMGMAPIAEVLFKRTLRHNPNDPKWPNRDRFVLSNGHASMLLYSLLHLTGY-DL 80 (333)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCC-CC
T ss_conf 57999999999999999838998206889999999999998277977989989874999674046999999998699-99
Q ss_pred CHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC---CCCCCEEEEEECCCCCCCHH
Q ss_conf 988986400038879889888899873068886314799999999999985342688---76784599984362114344
Q gi|254780655|r 99 TIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGD---VLIDHYTYVLVGDGCLMEGI 175 (673)
Q Consensus 99 ~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~---~~~d~~v~~iiGDG~l~eG~ 175 (673)
++|+|++||+++|+||||||+..+||||+||||||||+++|+|||+|.|.++.++++ +++||+|||++||||||||+
T Consensus 81 ~~edLk~frq~~S~~~GHPe~~~~~Gve~tTG~LGqGl~~avG~Ala~k~l~~~~n~~~~~~~d~~vy~l~GDGel~EG~ 160 (333)
T pfam00456 81 SMEDLKSFRQLGSKTPGHPEFGHTAGVEVTTGPLGQGIANAVGMAIAEANLAATYNRPGFDIVDHYTYVFLGDGCLMEGV 160 (333)
T ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHH
T ss_conf 89999863368999999989888998240687742225678879999999876636676665574499984643125398
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC-CCCCHHHHHHHHHHHHHC-CCCHHHH
Q ss_conf 55788765220223306999627632232235567821799886414444444-444067888888875110-2210222
Q gi|254780655|r 176 SQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTLSV-NGHDHHAITSTLRKAQLS-DKPTMIA 253 (673)
Q Consensus 176 ~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~Gw~~~~v-dG~d~~~i~~a~~~ak~~-~kP~~I~ 253 (673)
+|||+++|++++|+|||+|+|+|++||||+++.++.+|+.+||+||||+|++| ||||+++|.+|+++|+.+ +||++|+
T Consensus 161 ~~EA~~~Ag~~~L~nLi~i~D~N~iqidG~t~~~~~ed~~~rf~a~GW~v~~v~DGhD~~~I~~Ai~~Ak~~~~kPt~Ii 240 (333)
T pfam00456 161 SSEASSLAGHLKLGNLIAFYDDNRISIDGETEISFTEDTAKRFEAYGWHVIEVEDGHDVEAIAAAIEEAKAEKDKPTLII 240 (333)
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCEECCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99999999871789789997457542179845355510999987649079994699999999999999986589981698
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_conf 013345557000477110334372233212566348777854389789999997543335668876424676311111--
Q gi|254780655|r 254 CETVIGFGSPNRAGTNKVHGSALGQEEIKATRKALNWDLDPFFIPDDIMKKWRLAGLRSSQTRADWQERLSSMKSSIR-- 331 (673)
Q Consensus 254 ~~T~kG~G~~~~e~~~~~HG~~l~~ee~~~~~k~lg~~~~~f~ip~~v~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-- 331 (673)
|+|+||+|+|++||++++||+||++||++.+|+.+||+.+||++|++|+++|+....++.+.+.+|++++..|..++|
T Consensus 241 ~~TiiGkG~p~~eg~~~~HG~plg~ee~~~~k~~lg~~~~~F~vp~ev~~~~~~~~~~~~~~~~~W~~~~~~y~~~~Pe~ 320 (333)
T pfam00456 241 CRTVIGYGSPNKQGTHDVHGAPLGADEVAALKEKLGWDYKPFEIPQEVYDAWKEKVAEGAKAEAEWNELFAAYKKAYPEE 320 (333)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_conf 64215158844467876568888989999999985999998528899999999999854999999999999999879899
Q ss_pred -HCCCCHHHHHCC
Q ss_conf -002300111077
Q gi|254780655|r 332 -KEFERRFSDALP 343 (673)
Q Consensus 332 -~e~~~~~~~~~p 343 (673)
+++++..++.+|
T Consensus 321 ~~e~~~~~~g~lP 333 (333)
T pfam00456 321 AAEFVRRLNGELP 333 (333)
T ss_pred HHHHHHHHCCCCC
T ss_conf 9999999738998
No 13
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=100.00 E-value=0 Score=580.58 Aligned_cols=637 Identities=22% Similarity=0.261 Sum_probs=484.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHC------CCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHH
Q ss_conf 888999999999999999999738------89764313689999998433254457789887887799856520189999
Q gi|254780655|r 15 YDDDYKKMADAIRFLSMDAIENVN------SGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYA 88 (673)
Q Consensus 15 ~~~~l~~~a~~iR~~~~~~v~~a~------~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~ 88 (673)
+.+..+|+..-|||+++.||.+|| |||+++..|++.|+.+.|.+|++=. +.. ...|+ |+-+||+||++||
T Consensus 74 d~~~E~ri~~~iRWNa~~mV~ran~~~~~~GGHias~aS~atlyevgfnhFfr~~--~~~-~~gD~-V~~QgHasPgiyA 149 (886)
T PRK09405 74 DLELERRIRSAIRWNAMAMVLRANKKDLGLGGHIASFASSATLYEVGFNHFFRAP--NEE-DGGDL-VFFQGHASPGIYA 149 (886)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHEECCC--CCC-CCCCE-EEECCCCCHHHHH
T ss_conf 6999999999998889999986346789867438758879999986303156068--889-99887-9876877729999
Q ss_pred HHHHCCCCCCCHHHHHHHHCC--CCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 999707688998898640003--8879889888-8998730688863147999999999999853426887678459998
Q gi|254780655|r 89 LLYLLGYQDVTIEDIKNFRTI--GSKTAGHPEY-GSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVL 165 (673)
Q Consensus 89 ~~~l~G~~~~~~e~l~~~r~~--~s~~~Ghpe~-~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~i 165 (673)
.-+|.|| ++.++|.+||+- ++.++.+|.+ ...++++|+|||+|-|..+|+..|..+||+..+.-.+.-+.+|||+
T Consensus 150 rafLeGr--l~e~~L~nFR~E~~~~GlsSYPhp~lmpdfwqFpTvSmGLGp~~aiyqArf~rYl~~rgl~~~~~~kvwaf 227 (886)
T PRK09405 150 RAFLEGR--LTEEQLDNFRQEVDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAF 227 (886)
T ss_pred HHHHCCC--CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
T ss_conf 9998178--88999998875326998778999877998788985062510789999999999998459977788738999
Q ss_pred ECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC--CCCHHHHHHHCCCCCCCC---------------
Q ss_conf 436211434455788765220223306999627632232235567--821799886414444444---------------
Q gi|254780655|r 166 VGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLAD--STDQYARFRASGWNTLSV--------------- 228 (673)
Q Consensus 166 iGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~--~~~~~~~~~a~Gw~~~~v--------------- 228 (673)
+|||||.|+.+++|+.+|+..+|||||||+|||.+++||||...- ...+...|++.|||||+|
T Consensus 228 lGDgEmDEpes~gai~~A~re~LdNlifVVncNlQrLDGpVrGngkIIqELE~~FrgAGWnVIkviwG~~wd~Lfa~d~~ 307 (886)
T PRK09405 228 LGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAKDTS 307 (886)
T ss_pred ECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCCC
T ss_conf 53655575346889999998405866999977754578862685179999999885479618998215168999833785
Q ss_pred ------------------------------------------------------CCCCHHHHHHHHHHHHHC-CCCHHHH
Q ss_conf ------------------------------------------------------444067888888875110-2210222
Q gi|254780655|r 229 ------------------------------------------------------NGHDHHAITSTLRKAQLS-DKPTMIA 253 (673)
Q Consensus 229 ------------------------------------------------------dG~d~~~i~~a~~~ak~~-~kP~~I~ 253 (673)
.|||+.+|++|+++|.+. +|||+|+
T Consensus 308 g~L~~~m~e~~DgeyQ~~~~~~Gay~Re~ffg~~pel~~LV~~lSD~ei~~L~rGGHD~~KvyaAy~~A~~~kgrPTVIL 387 (886)
T PRK09405 308 GKLVQRMNETVDGDYQTYKAKDGAYVREHFFGKYPETAALVADMSDDDIWALNRGGHDPRKVYAAYKAAVEHKGQPTVIL 387 (886)
T ss_pred CHHHHHHHHHCCHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 66999999840378887841879999998728997899998518999999865269998999999999973689985999
Q ss_pred HCCCCCCCCCC-CCCCCCCCC-CCCCHHHHHHHHHHCCCCCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01334555700-047711033-43722332125663487778-------5438978999999754333566887642467
Q gi|254780655|r 254 CETVIGFGSPN-RAGTNKVHG-SALGQEEIKATRKALNWDLD-------PFFIPDDIMKKWRLAGLRSSQTRADWQERLS 324 (673)
Q Consensus 254 ~~T~kG~G~~~-~e~~~~~HG-~~l~~ee~~~~~k~lg~~~~-------~f~ip~~v~~~~~~~~~~~~~~~~~w~~~~~ 324 (673)
++|+||||.+. -|+.+..|+ +.|+.|+++.+|..+++|.. ||+.|++--...+... ++-+
T Consensus 388 A~TVKGyGlg~ageg~N~aHQ~Kkl~~e~l~~fRdrf~iPisDe~~e~~pf~~p~~dS~E~~Yl~-----------~rR~ 456 (886)
T PRK09405 388 AKTIKGYGMGEAGEGKNIAHQVKKLDLDDLKHFRDRFNIPISDEQLEDLPYYKPGEDSPEIKYLH-----------ERRK 456 (886)
T ss_pred EEEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCHHHHHHH-----------HHHH
T ss_conf 88764266674444542011003599999999999859998845513377878788999999999-----------9999
Q ss_pred HHHHHHHHCCCCHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH---HHHHHHCCCCCCCCCCC----
Q ss_conf 63111110023001110776302355542000001355431013467888998865---54332203455567400----
Q gi|254780655|r 325 SMKSSIRKEFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSELVLEVVNDC---LPELIGGSADLTGSNGT---- 397 (673)
Q Consensus 325 ~~~~~~~~e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vatr~a~g~~l~~i~~~---~p~iv~~sADl~~St~~---- 397 (673)
.....+|....+...-.+|. ...+..+... ..+..++|..+|+++|..+.+. -++||-+.+|.+.+++.
T Consensus 457 ~LgG~lP~Rr~~~~~l~vP~--l~~f~~~~~g--sg~r~iSTTmAFvRiL~~L~rdk~ig~rIVPIvPDEARTFGMeglF 532 (886)
T PRK09405 457 ALGGYLPARRPKFESLEVPA--LSAFDALLKG--SGEREISTTMAFVRILNILLKDKEIGKRIVPIIPDEARTFGMEGLF 532 (886)
T ss_pred HHCCCCCCCCCCCCCCCCCC--HHHHHHHHCC--CCCCCEEHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHH
T ss_conf 81899876678887689997--2556777437--8887443178999999999718144660575458630146828778
Q ss_pred -----CCCCCCCCC----------CCCCHHHCCCCCCCHHHHHH--HHHHHHH--CC-CCCCEECCCHHH-HHHHHHHHH
Q ss_conf -----026663445----------43200100325762002356--7879987--28-876220010035-553001245
Q gi|254780655|r 398 -----KTSQMKAIS----------KSDFSGRYLHYGVREHAMAA--AMNGIAL--HK-GLAPYSGTFMVF-SDYSRPAIR 456 (673)
Q Consensus 398 -----~~~~~~~~~----------~~~~p~r~i~~GIaE~~~~~--~aaGla~--~~-g~~p~~~tf~~F-~~~~~~~ir 456 (673)
+......+. ++...||.++.||+|.++.+ +|+|.+. |+ .++||...|++| +||.-|.+.
T Consensus 533 rq~GIys~~GQ~Y~p~D~~~l~~YkEs~~GQiLeeGI~Eaga~~s~~AagtSys~~g~pmIPfyi~YsmFGfQRvgDl~W 612 (886)
T PRK09405 533 RQIGIYNPHGQKYTPVDRDQVMYYKEDKDGQILQEGINEAGAMASWIAAATSYSTHNLPMIPFYIYYSMFGFQRIGDLAW 612 (886)
T ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHH
T ss_conf 64376677412267013266664210888714221112341699999875326535985303667630004546657888
Q ss_pred HHHHHHCCCEEEC-CCCCCCCCCCCCHHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCC-----CCCEEEEECC
Q ss_conf 4111100001302-454333333331010002221011101221121120124577776520256-----7834999524
Q gi|254780655|r 457 LASLMGIRVIHVL-THDSIGLGEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEK-----NRPSVLSLSR 530 (673)
Q Consensus 457 ~~al~~~~v~~v~-th~gi~~G~DGpTHq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~-----~gP~~ir~~R 530 (673)
.++.|..+-.+++ |-.+..+...|--||-..-.-+-..+|||.-+.|+.+.|++.+++..++.. +--.||.+..
T Consensus 613 aagD~~aRGFLiGaTaGRTTL~GEGLQHqDGhS~l~astiPnc~sYDPafayElavIv~~gl~rMy~~~edvfYYiT~~N 692 (886)
T PRK09405 613 AAGDQQARGFLLGGTAGRTTLNGEGLQHEDGHSHILASTIPNCISYDPAFAYEVAVIVQDGLRRMYGEQENVFYYITVMN 692 (886)
T ss_pred HHHHHCCCEEEEEECCCCCEECCCCCCCCCCCCHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 86331257289840788732274110366775547886367760206337889999999999999538876499997467
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECC--CCCEEEEECCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCHHCC-------
Q ss_conf 444334566553221234737998569--97299995268899999999999973-99439985746581000-------
Q gi|254780655|r 531 QNLPFLRTQYESNNLCALGAYDYISTP--NAQVTIFSSGSELKIAVEACEILSSR-NISTRVVSVPCFELFFE------- 600 (673)
Q Consensus 531 ~~~p~~~~~~~~~~~~~~G~~~~~~~~--~~dv~iia~G~~v~~al~aa~~L~~~-Gi~~~Vi~~~s~k~ld~------- 600 (673)
.+.+.........+.+.+|.|.+...+ ++.|.|+++|+.+.++++|+++|+++ ||.+.|+|++|++.|.+
T Consensus 693 Eny~~P~~P~g~eegIikG~Y~~~~~~~~~~~vqLlgSG~il~evl~Aa~~L~~d~gV~adVWSvTS~~ELrRd~~~~eR 772 (886)
T PRK09405 693 ENYVQPAMPEGAEEGIIKGMYKLETGEGGKGKVQLLGSGTILREVIEAAEILAKDYGVAADVWSVTSFNELARDGQDVER 772 (886)
T ss_pred CCCCCCCCCCCHHHHHHHCEEECCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHH
T ss_conf 65668678986288786320442336788961799935498999999999998831986218954888999998999999
Q ss_pred ---------CCHHHHHHHCCCC-CEEEEECCC---CHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHCCCCHHHHHHHH
Q ss_conf ---------8688999643679-779997286---027899984579818983577676888899998099989999999
Q gi|254780655|r 601 ---------QSDSYRAQIIGSS-PIKIAIEAG---LRQGWDAFIGSDGSFIGMQGFGASGSCDLLYQHFGINAIAIVDMV 667 (673)
Q Consensus 601 ---------~~~~~~~~il~~~-~~~vtiE~g---~~~g~~~~~~~~~~~igid~Fg~sg~~~el~~~~Gld~~~I~~~i 667 (673)
+...|..++|... .++|++.+. +...+..|+.....++|.|.||.|.+++.|.++|.+|+++|+-++
T Consensus 773 ~N~L~P~~~~r~~yv~~~l~~~~gPvvAasDYmr~~~dqIr~~vp~~y~~LGTDGFGRSDTR~~LR~fFEVD~~~Ivvaa 852 (886)
T PRK09405 773 WNMLHPTEEPRVPYVTQVLNDAQGPVIAATDYMKAFAEQIRAFVPRDYVVLGTDGFGRSDTREALRRFFEVDAYYVVVAA 852 (886)
T ss_pred HHHCCCCCCCCCCHHHHHHCCCCCCEEEECHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHCCCCHHHHHHHH
T ss_conf 97039987777678999847999987996676876499999746898656358888754247999987363789999999
Q ss_pred HHHHC
Q ss_conf 99848
Q gi|254780655|r 668 ERKLS 672 (673)
Q Consensus 668 ~~~L~ 672 (673)
+..|+
T Consensus 853 L~aLa 857 (886)
T PRK09405 853 LKALA 857 (886)
T ss_pred HHHHH
T ss_conf 99999
No 14
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=100.00 E-value=0 Score=575.89 Aligned_cols=641 Identities=21% Similarity=0.249 Sum_probs=498.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC------CCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHH
Q ss_conf 8999999999999999999738------8976431368999999843325445778988788779985652018999999
Q gi|254780655|r 17 DDYKKMADAIRFLSMDAIENVN------SGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYALL 90 (673)
Q Consensus 17 ~~l~~~a~~iR~~~~~~v~~a~------~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~~ 90 (673)
+..+|+-..+||+++.||-+++ |||++++.|++.|+.++|.+|++ +++.+ -+.| .|+-+||+||++||.-
T Consensus 76 ~lErrir~~~rWna~amvlRaskk~l~lGGH~sSfaSsatlyev~fnhffr--~~~~~-~ggD-lVf~qgHaSPg~yAra 151 (887)
T COG2609 76 ELERRIRSLIRWNAHAMVLRASKKGLELGGHIASFASSATLYEVGFNHFFR--AKSEK-DGGD-LVFFQGHASPGIYARA 151 (887)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC--CCCCC-CCCC-EEEEECCCCCHHHHHH
T ss_conf 999999999999999999970178887463034134378999998887735--76778-9986-6997067880488999
Q ss_pred HHCCCCCCCHHHHHHHHCCCC--CCCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 970768899889864000388--798898888-99873068886314799999999999985342688767845999843
Q gi|254780655|r 91 YLLGYQDVTIEDIKNFRTIGS--KTAGHPEYG-SCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVG 167 (673)
Q Consensus 91 ~l~G~~~~~~e~l~~~r~~~s--~~~Ghpe~~-~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiG 167 (673)
+|.|| ++.|+|.+||+..+ .+|.+|.+. ..++++|+|+|+|-|..+|+-.|...|||.+|.-++..|.+|||++|
T Consensus 152 fLeGR--lseeqLdnFRqev~g~gl~SYPhp~lmpdfwqFpTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afLG 229 (887)
T COG2609 152 FLEGR--LTEEQLDNFRQEVDGKGLSSYPHPKLMPDFWQFPTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLG 229 (887)
T ss_pred HHHCC--CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEC
T ss_conf 88142--5699998899751688877899876783201367533153289999999999999856886777873999955
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC--CCCCHHHHHHHCCCCCCCC-----------------
Q ss_conf 621143445578876522022330699962763223223556--7821799886414444444-----------------
Q gi|254780655|r 168 DGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLA--DSTDQYARFRASGWNTLSV----------------- 228 (673)
Q Consensus 168 DG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~--~~~~~~~~~~a~Gw~~~~v----------------- 228 (673)
||||.|+.+.+|+.+|+.++|+|||+++|||.+++||+|..- ....+...|++.||+|+.|
T Consensus 230 DgEmDEpes~gAi~~A~re~LdNlifVincNlQrLDgpVrgngkiiqelE~~FrgaGWnVikviWg~~wd~ll~~d~~gk 309 (887)
T COG2609 230 DGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGRRWDELLAKDTGGK 309 (887)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCCH
T ss_conf 75567703568999999846675499996561105884147735499999886037851899972440788860367446
Q ss_pred ----------------------------------------------------CCCCHHHHHHHHHHHHHCC-CCHHHHHC
Q ss_conf ----------------------------------------------------4440678888888751102-21022201
Q gi|254780655|r 229 ----------------------------------------------------NGHDHHAITSTLRKAQLSD-KPTMIACE 255 (673)
Q Consensus 229 ----------------------------------------------------dG~d~~~i~~a~~~ak~~~-kP~~I~~~ 255 (673)
.|||...|+.|+++|+..+ +||+|+++
T Consensus 310 L~~~m~e~~dgdyqt~ka~dGayvRehff~~~pe~~aLVa~~tD~diw~L~rGGHD~~kv~aA~~~A~~~kg~PtvilA~ 389 (887)
T COG2609 310 LRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALVADMTDDDIWALNRGGHDPEKVYAAFKKAQEHKGRPTVILAK 389 (887)
T ss_pred HHHHHHHCCCCHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 99999856552366640056399999871567588999986368899998637998799999999985378997599976
Q ss_pred CCCCCCCC-CCCCCCCCCCC-CCCHHHHHHHHHHCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33455570-00477110334-372233212566348777854389789999-9975433356688764246763111110
Q gi|254780655|r 256 TVIGFGSP-NRAGTNKVHGS-ALGQEEIKATRKALNWDLDPFFIPDDIMKK-WRLAGLRSSQTRADWQERLSSMKSSIRK 332 (673)
Q Consensus 256 T~kG~G~~-~~e~~~~~HG~-~l~~ee~~~~~k~lg~~~~~f~ip~~v~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 332 (673)
|+||+|.+ ..|+....|.. .+..++++.+|..++.+.. |+..+. +-.+...+...+.-...+.+......|.
T Consensus 390 TIKGyglg~~~eg~n~aHq~kkm~~~~l~~~Rdr~~ipi~-----d~e~e~lpy~~~g~~s~E~~yl~~rr~al~g~~p~ 464 (887)
T COG2609 390 TIKGYGLGEAAEGKNIAHQVKKMTPDQLKEFRDRFGIPVS-----DAELEELPYYHFGEDSPEYKYLHARRAALGGYLPA 464 (887)
T ss_pred EECCCCCCHHHCCCCHHHHHHCCCHHHHHHHHHHCCCCCC-----HHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCH
T ss_conf 3024667701013663555623899999999861599774-----45530377677789948899999999865887701
Q ss_pred CCCCHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH---HHHHHCCCCCCCCCCC---------CCC
Q ss_conf 0230011107763023555420000013554310134678889988655---4332203455567400---------026
Q gi|254780655|r 333 EFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSELVLEVVNDCL---PELIGGSADLTGSNGT---------KTS 400 (673)
Q Consensus 333 e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vatr~a~g~~l~~i~~~~---p~iv~~sADl~~St~~---------~~~ 400 (673)
... .+...+|.. .+.++..........++|..+|..+++.+.+.. ++||-.++|.+.+++. +..
T Consensus 465 rr~-~~t~~l~vP---~l~~~~a~~~~~g~~iSTtmAfvr~l~~llkdk~ig~riVpiipDearTfgmeg~f~~~GIy~~ 540 (887)
T COG2609 465 RRP-KFTPALPVP---SLSDFQALLKGQGEEISTTMAFVRILNELLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGIYNP 540 (887)
T ss_pred HCC-CCCCCCCCC---CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCHHHHHHCCCCCC
T ss_conf 104-678875688---5788999984367510348999999999972114467241346742320560443320231167
Q ss_pred CCCCCCC----------CCCHHHCCCCCCCHHHHHH--HHHHHHH--CC-CCCCEECCCHHH-HHHHHHHHHHHHHHHCC
Q ss_conf 6634454----------3200100325762002356--7879987--28-876220010035-55300124541111000
Q gi|254780655|r 401 QMKAISK----------SDFSGRYLHYGVREHAMAA--AMNGIAL--HK-GLAPYSGTFMVF-SDYSRPAIRLASLMGIR 464 (673)
Q Consensus 401 ~~~~~~~----------~~~p~r~i~~GIaE~~~~~--~aaGla~--~~-g~~p~~~tf~~F-~~~~~~~ir~~al~~~~ 464 (673)
....|.+ +...|+.++.||.|.++++ +|+|.+. |+ .++||..-|++| +||.-|.+..+|.|..+
T Consensus 541 ~GQ~y~p~d~~~~~~ykea~~GQiLqeGInE~ga~~sw~AagtSys~~~~pmiPfyi~YsmFgfqRigD~~waA~dq~AR 620 (887)
T COG2609 541 NGQQYTPQDRDQVMYYKEAESGQILQEGINEAGAFASWIAAGTSYSTHGEPMIPFYIYYSMFGFQRIGDLLWAAGDQDAR 620 (887)
T ss_pred CCCCCCCCCHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHC
T ss_conf 77657745426554100187755287521220379999987525433796412564542124465588899887766411
Q ss_pred -CEEECCCCCCCCCCCCCHHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCC------CCCEEEEECCCCCCCCC
Q ss_conf -01302454333333331010002221011101221121120124577776520256------78349995244443345
Q gi|254780655|r 465 -VIHVLTHDSIGLGEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEK------NRPSVLSLSRQNLPFLR 537 (673)
Q Consensus 465 -v~~v~th~gi~~G~DGpTHq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~------~gP~~ir~~R~~~p~~~ 537 (673)
.++.+|.++..+-..|--||...-.-.--.+|||..+.|+.+.|++.+++++++.. +.-.||++...+.+...
T Consensus 621 gFLLgaTagrtTLngEGlqHedghS~l~~~~ip~~~tYdPafayEvAVI~~~g~~rmy~~~qe~~~yYit~~ne~~~qPa 700 (887)
T COG2609 621 GFLLGATAGRTTLNGEGLQHEDGHSHLQAMTIPNCISYDPAFAYEVAVIMQDGLRRMYGEGQENVFYYITLSNENYPQPA 700 (887)
T ss_pred CEEEEECCCCCEECCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCC
T ss_conf 03665257873337653345555431665147885124843788989999999999723566780799996467778999
Q ss_pred CCCCCCCCCCCCCEEEEECC---CCCEEEEECCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHCC-------------
Q ss_conf 66553221234737998569---9729999526889999999999997-399439985746581000-------------
Q gi|254780655|r 538 TQYESNNLCALGAYDYISTP---NAQVTIFSSGSELKIAVEACEILSS-RNISTRVVSVPCFELFFE------------- 600 (673)
Q Consensus 538 ~~~~~~~~~~~G~~~~~~~~---~~dv~iia~G~~v~~al~aa~~L~~-~Gi~~~Vi~~~s~k~ld~------------- 600 (673)
......+.+.+|.|.+...+ +..|.|+++|..+.+|++|+++|++ .|+.+.|++++|++.|.+
T Consensus 701 mp~gae~gI~kG~Y~l~~~~~~~~~~vqll~SGai~~ea~~AaelL~~d~gv~adl~svtS~~eL~rdg~a~~R~n~lhP 780 (887)
T COG2609 701 MPEGAEEGIIKGIYKLETPGGQGKAKVQLLGSGAILREALEAAELLAKDYGVEADLWSVTSFDELARDGQAAERWNLLHP 780 (887)
T ss_pred CCCCCHHHHHHCEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHCCHHHHHHHHHCCC
T ss_conf 88861665654215753378788734899724130799999999875321656673533668887303577788885189
Q ss_pred ---CCHHHHHHHCCCCCEEEEECCCCHHH---HHHHHCCCCCEEEECCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf ---86889996436797799972860278---9998457981898357767688889999809998999999999848
Q gi|254780655|r 601 ---QSDSYRAQIIGSSPIKIAIEAGLRQG---WDAFIGSDGSFIGMQGFGASGSCDLLYQHFGINAIAIVDMVERKLS 672 (673)
Q Consensus 601 ---~~~~~~~~il~~~~~~vtiE~g~~~g---~~~~~~~~~~~igid~Fg~sg~~~el~~~~Gld~~~I~~~i~~~L~ 672 (673)
+...|...+|+...++|++.+++... +..+++...+++|.|+||.|+++++|+++|++|+..|+.++...|+
T Consensus 781 ~~~~~v~yv~~~L~~~~p~Va~tDy~~~~a~qir~~vp~~y~vLGtdgFGrSdsr~~Lr~~fevDa~~vv~Aal~~La 858 (887)
T COG2609 781 TETPRVPYVAQVLNADGPVVAVTDYMKLFAEQIRAVVPQRYRVLGTDGFGRSDSRENLRRFFEVDAYYVVVAALSALA 858 (887)
T ss_pred CCCCCCHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 877760489987436897688520037689997510687159941477786676799999844657899999999983
No 15
>TIGR00759 aceE 2-oxo-acid dehydrogenase E1 component, homodimeric type; InterPro: IPR004660 Most members of this family are pyruvate dehydrogenase complex, E1 component. It includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogenase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of Escherichia coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity. ; GO: 0016491 oxidoreductase activity.
Probab=100.00 E-value=0 Score=576.81 Aligned_cols=635 Identities=22% Similarity=0.266 Sum_probs=489.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHC------CCCCCCCCCHHHHHHHHHHHHEEECCCCCCC-CCCCEEEEECCCCHHHHH
Q ss_conf 888999999999999999999738------8976431368999999843325445778988-788779985652018999
Q gi|254780655|r 15 YDDDYKKMADAIRFLSMDAIENVN------SGHPGLPMGMADVVTALFTQCMVFDPQCPYW-PNRDRFVLSAGHGSMLYY 87 (673)
Q Consensus 15 ~~~~l~~~a~~iR~~~~~~v~~a~------~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~-~~rDr~v~s~GH~s~~~Y 87 (673)
+.|..+|+-+.+||+++.||.+|| |||+++..|+|+|+-+-|.||+|=.. .+.. ..+| +||-.||.||++|
T Consensus 71 D~elErRIRs~~RWNA~aMV~RA~kk~~~~GGHistyaSaA~lyeVGFNHFFRg~~-~~~~Gr~gD-LVF~QGHaaPG~Y 148 (905)
T TIGR00759 71 DLELERRIRSIIRWNAIAMVLRANKKDLDLGGHISTYASAATLYEVGFNHFFRGKS-EGEGGRGGD-LVFFQGHAAPGIY 148 (905)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCC-EEEECCCCCCHHH
T ss_conf 54577888778879999999874078888653076899999997211133402688-888884344-3467887671378
Q ss_pred HHHHHCCCCCCCHHHHHHHHCC----CCCCCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
Q ss_conf 9999707688998898640003----887988--9888899873068886314799999999999985342688767845
Q gi|254780655|r 88 ALLYLLGYQDVTIEDIKNFRTI----GSKTAG--HPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHY 161 (673)
Q Consensus 88 ~~~~l~G~~~~~~e~l~~~r~~----~s~~~G--hpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~ 161 (673)
|.-.|.|| |+.|+|.+|||- |..|+. ||.. +.+|++|+|+|+|-|-=+|+..|.-.|||..|--++-.|.+
T Consensus 149 ARAFLEGR--Lt~~QLd~FRQE~~~~G~GLsSYPHP~L-MPdFWqFPTVSMGLGPi~AIYQARF~kYL~~RGlk~~~d~~ 225 (905)
T TIGR00759 149 ARAFLEGR--LTEEQLDNFRQEVSHVGDGLSSYPHPWL-MPDFWQFPTVSMGLGPINAIYQARFLKYLENRGLKDTSDQK 225 (905)
T ss_pred HHHHHHCC--CCHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCE
T ss_conf 99854215--6688860215101557758887556778-84404698765664145799998987765404774202775
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC--CCCCHHHHHHHCCCCCCCC-----------
Q ss_conf 999843621143445578876522022330699962763223223556--7821799886414444444-----------
Q gi|254780655|r 162 TYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLA--DSTDQYARFRASGWNTLSV----------- 228 (673)
Q Consensus 162 v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~--~~~~~~~~~~a~Gw~~~~v----------- 228 (673)
|||++|||||+|..+--|+.+|+..+|||||+++|||-+.+||||..- ....+...|++.|||||+|
T Consensus 226 VwaFLGDGEMDEPES~Ga~~~AarE~LDNL~FviNCNLQRLDGPVrGNGKIIQELEslF~GAGWNVIKV~WGS~WD~Ll~ 305 (905)
T TIGR00759 226 VWAFLGDGEMDEPESKGAITFAAREKLDNLVFVINCNLQRLDGPVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALLA 305 (905)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHHHH
T ss_conf 89984787557187799987665523754178863213036875415741201124312688831788840885689987
Q ss_pred ----------------------------------------------------------CCCCHHHHHHHHHHHHHC-CCC
Q ss_conf ----------------------------------------------------------444067888888875110-221
Q gi|254780655|r 229 ----------------------------------------------------------NGHDHHAITSTLRKAQLS-DKP 249 (673)
Q Consensus 229 ----------------------------------------------------------dG~d~~~i~~a~~~ak~~-~kP 249 (673)
-|||+.+|++|+++|+.. +||
T Consensus 306 ~D~~G~L~~~m~~~vDG~yQT~kA~DGaY~REHFFn~~Pel~ALV~dmsD~dIw~LnRGGHD~~K~YAAy~~A~~~KG~P 385 (905)
T TIGR00759 306 RDTSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWALNRGGHDPRKVYAAYAAAQEHKGKP 385 (905)
T ss_pred HCCCCHHHHHHHHCCCCCEEECCCCCCCEECCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 15133789998525897300000268863104346888789998616787899974067997388999999986289984
Q ss_pred HHHHHCCCCCCCCC-CCCCCCCCCC-CCCCHHHHHHHHHHCCCCCCCCCCCHHHHHH----HHHHHHHHHHHHHHH----
Q ss_conf 02220133455570-0047711033-4372233212566348777854389789999----997543335668876----
Q gi|254780655|r 250 TMIACETVIGFGSP-NRAGTNKVHG-SALGQEEIKATRKALNWDLDPFFIPDDIMKK----WRLAGLRSSQTRADW---- 319 (673)
Q Consensus 250 ~~I~~~T~kG~G~~-~~e~~~~~HG-~~l~~ee~~~~~k~lg~~~~~f~ip~~v~~~----~~~~~~~~~~~~~~w---- 319 (673)
|+|++||+||||.+ ..|...-.|+ +.|.-|.++.+|..+.+|.. |+-.+. ..+....-...+.++
T Consensus 386 TvILAkTiKGYg~g~~~e~rN~AHQ~KKl~~~~lk~fRD~f~lPls-----D~QvE~nPy~l~Yy~p~e~s~E~~Yl~~~ 460 (905)
T TIGR00759 386 TVILAKTIKGYGLGDAAEARNVAHQVKKLEVDALKEFRDRFELPLS-----DAQVEKNPYLLPYYHPGEGSPEVRYLRAR 460 (905)
T ss_pred EEEECCCCCCCCCCHHHHHCCHHHHHCCCCHHHHHHHHHHCCCCCC-----HHHHHHCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 7860543466467643322013553056687889842000248877-----67773078768731388877778999999
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHCCCCCCCC-CCCCHHHHHHHHHHHHHHHH---HHHHHCCC------
Q ss_conf 424676311111002300111077630235554200000135-54310134678889988655---43322034------
Q gi|254780655|r 320 QERLSSMKSSIRKEFERRFSDALPDCFDNAFINLKKKFEHSK-PMIATRKSSELVLEVVNDCL---PELIGGSA------ 389 (673)
Q Consensus 320 ~~~~~~~~~~~~~e~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~vatr~a~g~~l~~i~~~~---p~iv~~sA------ 389 (673)
-+.+.++-|+.+.+ ....++-.-.+.+..+.... .. ..+||..|+-.+|+.+-+.- |.||=+-|
T Consensus 461 R~~LgG~~P~Rr~k----~~~~L~vP~l~~f~~l~~~~--~~G~evSTTMA~VR~l~~lLkdK~IG~~iVPIvpDEARTF 534 (905)
T TIGR00759 461 RQALGGYLPARRTK----FAEKLTVPALEVFGALLKGS--GEGREVSTTMAFVRILNELLKDKEIGKRIVPIVPDEARTF 534 (905)
T ss_pred HHHCCCCCCCCCCC----CCCCCCCCCHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC
T ss_conf 97438855665777----75566798567889998607--8887111688999999997237787886632206744412
Q ss_pred ---CCCCCCCCCCCCCCCCCCCC----------CHHHCCCCCCCHHHHHH--HHHHHH--HCC-CCCCEECCCHHH-HHH
Q ss_conf ---55567400026663445432----------00100325762002356--787998--728-876220010035-553
Q gi|254780655|r 390 ---DLTGSNGTKTSQMKAISKSD----------FSGRYLHYGVREHAMAA--AMNGIA--LHK-GLAPYSGTFMVF-SDY 450 (673)
Q Consensus 390 ---Dl~~St~~~~~~~~~~~~~~----------~p~r~i~~GIaE~~~~~--~aaGla--~~~-g~~p~~~tf~~F-~~~ 450 (673)
-|..+.|++....+.|.+.+ -.||.++-||.|..+++ +|||-+ .|+ -++||+.-|||| +||
T Consensus 535 GM~~LFrqiGIYsp~GQ~Y~P~D~~~l~~YkEs~~GQ~L~EGInEaGA~~SWiAAaTSYa~hg~PMIPfYIyYSMFGfQR 614 (905)
T TIGR00759 535 GMEGLFRQIGIYSPNGQKYTPEDADSLLAYKESKDGQILQEGINEAGAMASWIAAATSYATHGEPMIPFYIYYSMFGFQR 614 (905)
T ss_pred CHHHCCCCCCEECCCCCEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHH
T ss_conf 50221374530578987451034334677645026854131055676777799986456554876541577302764015
Q ss_pred HHHHHHHHHHHHCCCEEECCCCCCC-C-C-----CCCCHH-HHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCC--
Q ss_conf 0012454111100001302454333-3-3-----333101-0002221011101221121120124577776520256--
Q gi|254780655|r 451 SRPAIRLASLMGIRVIHVLTHDSIG-L-G-----EDGPTH-QPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEK-- 520 (673)
Q Consensus 451 ~~~~ir~~al~~~~v~~v~th~gi~-~-G-----~DGpTH-q~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~-- 520 (673)
.=|-+.-||-|..+=.+++.-+|=+ + | +||-|| |+. .||||.-|.||.+.|++.+++.++...
T Consensus 615 iGDl~WAAADQ~ARGFllGaTAGRTTL~GEGLQH~DGhSl~~~~-------~~Pnc~~YDPaFAyEvAVI~~~Gl~RMy~ 687 (905)
T TIGR00759 615 IGDLCWAAADQRARGFLLGATAGRTTLNGEGLQHEDGHSLVQAA-------TIPNCIAYDPAFAYEVAVIMEDGLRRMYG 687 (905)
T ss_pred HHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCHHHHHHHH-------HCCCCEECCCCHHHHHHHHHHHHHHHHCC
T ss_conf 77899988865320000023424300035664100036788973-------53743101751023367878778973236
Q ss_pred ----CCCEEEEECCCCC--CCCCCC---CCCCCCCCCCCEEEEEC----CCCCEEEEECCHHHHHHHHHHHHHHHC-CCC
Q ss_conf ----7834999524444--334566---55322123473799856----997299995268899999999999973-994
Q gi|254780655|r 521 ----NRPSVLSLSRQNL--PFLRTQ---YESNNLCALGAYDYIST----PNAQVTIFSSGSELKIAVEACEILSSR-NIS 586 (673)
Q Consensus 521 ----~gP~~ir~~R~~~--p~~~~~---~~~~~~~~~G~~~~~~~----~~~dv~iia~G~~v~~al~aa~~L~~~-Gi~ 586 (673)
+--.||..-..+. |.++.. ....+.+.+|-|..... ....|.|++||+.+..+++||++|+++ ||.
T Consensus 688 E~qed~FyY~Tv~NE~y~~P~mP~~lsh~~~~~gi~kG~Yrf~~~~~~~~~~~vQLLgSG~i~r~v~~Aa~lLa~DyGV~ 767 (905)
T TIGR00759 688 EKQEDVFYYVTVLNENYVQPPMPEGLSHEEAEEGILKGLYRFETATEEKAKGRVQLLGSGAIMREVIEAAELLAADYGVA 767 (905)
T ss_pred CCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCE
T ss_conf 67442247664505788878887243534426777740344100001047871367524568999999999987517831
Q ss_pred EEEEECCCCCHHCCC----------------CHHHHHHHCCC-CCE--EEEECCCC---HHHHHHHHC-CCCCEEEECCC
Q ss_conf 399857465810008----------------68899964367-977--99972860---278999845-79818983577
Q gi|254780655|r 587 TRVVSVPCFELFFEQ----------------SDSYRAQIIGS-SPI--KIAIEAGL---RQGWDAFIG-SDGSFIGMQGF 643 (673)
Q Consensus 587 ~~Vi~~~s~k~ld~~----------------~~~~~~~il~~-~~~--~vtiE~g~---~~g~~~~~~-~~~~~igid~F 643 (673)
+.|+|++|++-|.++ -..|..++|.+ .-+ +|++.+.+ ...+..||- ....+||.|+|
T Consensus 768 sDvwSvtSf~ELaRdg~dv~R~nlLHP~e~~~vsyVA~~L~~~~aPGv~iA~tDYvra~a~qir~~VP~~~Y~tLGTDGF 847 (905)
T TIGR00759 768 SDVWSVTSFTELARDGHDVERWNLLHPTETPRVSYVAQVLNEADAPGVVIASTDYVRAFAEQIRPYVPARKYVTLGTDGF 847 (905)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCHHHHCHHHHHHCCCCCCCEEECCCCC
T ss_conf 45520587567656789998864258788887648989741279980699852212303576631278877368315788
Q ss_pred CCCCCHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 67688889999809998999999999848
Q gi|254780655|r 644 GASGSCDLLYQHFGINAIAIVDMVERKLS 672 (673)
Q Consensus 644 g~sg~~~el~~~~Gld~~~I~~~i~~~L~ 672 (673)
|.|-+++.|.++|..|++.+|-++++.|+
T Consensus 848 GRSDtR~~LR~fFEVD~~~VVlA~L~aLa 876 (905)
T TIGR00759 848 GRSDTRENLRHFFEVDAKSVVLAALEALA 876 (905)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 60168998764411055057788899998
No 16
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=100.00 E-value=0 Score=561.24 Aligned_cols=253 Identities=48% Similarity=0.791 Sum_probs=240.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 99999999999973889764313689999998433254457789887887799856520189999999707688998898
Q gi|254780655|r 24 DAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYALLYLLGYQDVTIEDI 103 (673)
Q Consensus 24 ~~iR~~~~~~v~~a~~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~~~l~G~~~~~~e~l 103 (673)
++||.++++||.++|+||+|++||+|||+++||.++|+++|.+|+|++|||||||+||++|++|++++++|+ ++.++|
T Consensus 1 ~~iR~~il~~v~~~~~GH~g~~lS~vei~~aLy~~~~~~~~~~~~~~~rDr~ilskGH~~~~~Ya~l~~~G~--~~~~~L 78 (255)
T cd02012 1 NRIRRLSIDMVQKAGSGHPGGSLSAADILAVLYFKVLKYDPADPKWPNRDRFVLSKGHASPALYAVLALAGY--LPEEDL 78 (255)
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCC--CCHHHH
T ss_conf 958999999999729984036779999999999877424878999878885999662068999999999489--988998
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 64000388798898888998730688863147999999999999853426887678459998436211434455788765
Q gi|254780655|r 104 KNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFA 183 (673)
Q Consensus 104 ~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A 183 (673)
.+||+.+|+++|||++..+|||++||||||||+|+|+|||+|.|+.+. +++|||++|||||+||++|||+++|
T Consensus 79 ~~~~~~gs~l~ghp~~~~~~gi~~stGsLG~gls~a~G~A~a~k~~~~-------~~~v~~~iGDGel~EG~~wEAl~~A 151 (255)
T cd02012 79 KTFRQLGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEKLLGF-------DYRVYVLLGDGELQEGSVWEAASFA 151 (255)
T ss_pred HHCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCC-------CCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 414579997899999899999651787537789999999999986288-------8717999425110331289999998
Q ss_pred HHHCCCCEEEEEECCCCCCCCCCCCCCC-CCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCHHHHHCCCCCCC
Q ss_conf 2202233069996276322322355678-21799886414444444444067888888875110-221022201334555
Q gi|254780655|r 184 GHLGLSKLIVLWDNNGISIDGPISLADS-TDQYARFRASGWNTLSVNGHDHHAITSTLRKAQLS-DKPTMIACETVIGFG 261 (673)
Q Consensus 184 ~~~~l~nli~i~d~N~~si~~~~~~~~~-~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak~~-~kP~~I~~~T~kG~G 261 (673)
++++|+|||+|+|+|++|+++++..... +++.++|++|||+|++|||||+++|.+|+++++.. +||++|+++|+||+|
T Consensus 152 ~~~~L~nLi~ivD~N~~~~~g~~~~~~~~~~l~~~~~sfG~~v~~vdGhd~~~i~~a~~~a~~~~~kP~~I~~~T~KGkG 231 (255)
T cd02012 152 GHYKLDNLIAIVDSNRIQIDGPTDDILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIAKTIKGKG 231 (255)
T ss_pred HHCCCCCEEEEECCCCCEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCC
T ss_conf 55587756999868982625603025476889999996698111017999999999999998679995899999651148
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 700047711033437223321256
Q gi|254780655|r 262 SPNRAGTNKVHGSALGQEEIKATR 285 (673)
Q Consensus 262 ~~~~e~~~~~HG~~l~~ee~~~~~ 285 (673)
+|++||+.+||+.++++||++.+|
T Consensus 232 ~~~~E~~~~~H~~~~~~~e~~~a~ 255 (255)
T cd02012 232 VPFMENTAKWHGKPLGEEEVELAK 255 (255)
T ss_pred CCHHCCCCCCCCCCCCHHHHHHHC
T ss_conf 823219972006999989999629
No 17
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=100.00 E-value=0 Score=529.12 Aligned_cols=629 Identities=22% Similarity=0.260 Sum_probs=479.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHC------CCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHH
Q ss_conf 88999999999999999999738------897643136899999984332544577898878877998565201899999
Q gi|254780655|r 16 DDDYKKMADAIRFLSMDAIENVN------SGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYAL 89 (673)
Q Consensus 16 ~~~l~~~a~~iR~~~~~~v~~a~------~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~ 89 (673)
.+..+|+.+-|||+++.||.+|| |||+++..|++.|+.+-|.+|++=. .++. ..| +|+-.||.||++|+.
T Consensus 86 ~~lE~ri~~~iRWNA~amV~rAn~~~~~lGGHIstyaS~AtlyevGfNhFfrg~-~~~~--~gD-~v~fQgH~sPGiYaR 161 (898)
T PRK13012 86 LALEERLAAILRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRGR-GDAG--GGD-LVYFQPHSAPGVYAR 161 (898)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCEEEECC-CCCC--CCC-EEEECCCCCCHHHHH
T ss_conf 999999999988899999998426788867417757768999985143067468-8899--987-799758888158899
Q ss_pred HHHCCCCCCCHHHHHHHHCC--CCCCCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 99707688998898640003--887988--98888998730688863147999999999999853426887678459998
Q gi|254780655|r 90 LYLLGYQDVTIEDIKNFRTI--GSKTAG--HPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVL 165 (673)
Q Consensus 90 ~~l~G~~~~~~e~l~~~r~~--~s~~~G--hpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~i 165 (673)
-.|.|| ++.++|.+||+- +..++. || +-+.++++|.|.|+|-|--.|+..|.-.|||..|.-.+..+.+|||+
T Consensus 162 afLEGR--l~e~ql~~FRqE~~g~GlsSYPHP-~lMPdfWqfPTvSMGLgpi~aIyqArf~kYL~~Rgl~~~~~~kVw~f 238 (898)
T PRK13012 162 AFLEGR--LSEAQLDHFRQEIAGPGLSSYPHP-WLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLKDTSGRKVWGF 238 (898)
T ss_pred HHHHCC--CCHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
T ss_conf 987067--889999888876348998899986-65864467784045644889999999999998579977777708999
Q ss_pred ECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC--CCHHHHHHHCCCCCCCC---------------
Q ss_conf 4362114344557887652202233069996276322322355678--21799886414444444---------------
Q gi|254780655|r 166 VGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADS--TDQYARFRASGWNTLSV--------------- 228 (673)
Q Consensus 166 iGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~--~~~~~~~~a~Gw~~~~v--------------- 228 (673)
+|||||.|..+.-|+++|+..+|||||+++|||-+.+||||..--. ..+...|++.|||||+|
T Consensus 239 ~GDGEmDEPEs~gai~lA~rE~LDNLifVvNCNLQRLDGPVrGNgkIiqELE~~FrGAGWnVIKviWGs~WD~Ll~~D~~ 318 (898)
T PRK13012 239 FGDGEMDEPESIGALSLAAREGLDNLVFVINCNLQRLDGPVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTT 318 (898)
T ss_pred ECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHCCCC
T ss_conf 55876688311235556666136875999956750158873686289999998742289537997367866789725885
Q ss_pred ------------------------------------------------------CCCCHHHHHHHHHHHHH-CCCCHHHH
Q ss_conf ------------------------------------------------------44406788888887511-02210222
Q gi|254780655|r 229 ------------------------------------------------------NGHDHHAITSTLRKAQL-SDKPTMIA 253 (673)
Q Consensus 229 ------------------------------------------------------dG~d~~~i~~a~~~ak~-~~kP~~I~ 253 (673)
.|||...|+.|+++|.+ .++||+|.
T Consensus 319 G~L~~~m~e~vDGdyQ~~~a~~Gay~RehFFgk~Pel~~lV~~lSDedI~~L~RGGHDp~KvYAAY~~A~~~kG~PTVIL 398 (898)
T PRK13012 319 GALARAFAETVDGQFQTFKANDGAYNREHFFGQNPELAALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRHKGQPTVIL 398 (898)
T ss_pred CHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 77999998612507676304568899999808988999998538999999876369987999999999985679984897
Q ss_pred HCCCCCCCC-CCCCCCCCCCC-CCCCHHHHHHHHHHCCCCCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 013345557-00047711033-43722332125663487778-------5438978999999754333566887642467
Q gi|254780655|r 254 CETVIGFGS-PNRAGTNKVHG-SALGQEEIKATRKALNWDLD-------PFFIPDDIMKKWRLAGLRSSQTRADWQERLS 324 (673)
Q Consensus 254 ~~T~kG~G~-~~~e~~~~~HG-~~l~~ee~~~~~k~lg~~~~-------~f~ip~~v~~~~~~~~~~~~~~~~~w~~~~~ 324 (673)
++|+||+|. +..|+....|+ +.|+.|+++.+|..|++|.. ||+.|++--...++. +++-+
T Consensus 399 AkTvKGyGlG~~gEg~N~tHQ~KKl~~d~Lk~fRdrf~iPisDe~~e~~pfy~P~~dS~E~~Yl-----------~~rR~ 467 (898)
T PRK13012 399 AKTKKGFGMGEAGQGRMTTHQQKKLDVEALKAFRDRFRLPLSDEQLEQLPFYKPAEDSPEMRYL-----------HARRA 467 (898)
T ss_pred EEEEEECCCCCHHHHCCHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCHHHHHH-----------HHHHH
T ss_conf 5223325666124202124302459999999999975999885665108987989999999999-----------99999
Q ss_pred HHHHHHHHCCCCHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH---HHHHHCCCC---------CC
Q ss_conf 631111100230011107763023555420000013554310134678889988655---433220345---------55
Q gi|254780655|r 325 SMKSSIRKEFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSELVLEVVNDCL---PELIGGSAD---------LT 392 (673)
Q Consensus 325 ~~~~~~~~e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vatr~a~g~~l~~i~~~~---p~iv~~sAD---------l~ 392 (673)
.....+|........-.+|. .+.+..+... ..+..++|..+|..+|..+.+.- ++||-+-+| |.
T Consensus 468 ~LGG~~P~R~~~~~~l~~P~--~~~f~~~~~g--sg~r~~STTmafvR~l~~Llkdk~ig~riVPIvpDEaRTFGMe~lF 543 (898)
T PRK13012 468 ALGGYLPRRRTAADALPVPP--LSAFAQFALG--AGGKEMSTTMAFVRMLGGLLKDKALGPRIVPIVADEARTFGMANLF 543 (898)
T ss_pred HCCCCCCCCCCCCCCCCCCC--HHHHHHHHCC--CCCCCEEHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCHHHH
T ss_conf 83898987888887789988--7899999648--8987402799999999999608265761665436721024737656
Q ss_pred CCCCCCCCCCCCCC----------CCCCHHHCCCCCCCHHHHHH--HHHHHHH--CC-CCCCEECCCHHH-HHHHHHHHH
Q ss_conf 67400026663445----------43200100325762002356--7879987--28-876220010035-553001245
Q gi|254780655|r 393 GSNGTKTSQMKAIS----------KSDFSGRYLHYGVREHAMAA--AMNGIAL--HK-GLAPYSGTFMVF-SDYSRPAIR 456 (673)
Q Consensus 393 ~St~~~~~~~~~~~----------~~~~p~r~i~~GIaE~~~~~--~aaGla~--~~-g~~p~~~tf~~F-~~~~~~~ir 456 (673)
...+++.+..+.+. ++.-.|+.++.||.|..+.+ +|||-|. |+ .++||+.-|++| +||.-|.+.
T Consensus 544 rq~gIYs~~GQ~Y~PvD~~~l~~YkE~~~GQiLeEGInEAGa~sswiAA~TsYs~hg~pmIPfYIfYSMFGFQRvGDl~W 623 (898)
T PRK13012 544 RQVGIYSPLGQLYEPEDAGSLLYYREATDGQILEEGISEAGAISSWIAAATSYSVHGLPMLPFYIYYSMFGFQRIGDLIW 623 (898)
T ss_pred HHCCEECCCCCCCCCEEHHHHHHEEECCCCCCHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHH
T ss_conf 32331278876057442211310012678722221310000589998750031127985405688766403056767998
Q ss_pred HHHHHHCCCEEECCCCCCC-C-C-----CCCCHHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCC-----CCCCE
Q ss_conf 4111100001302454333-3-3-----333101000222101110122112112012457777652025-----67834
Q gi|254780655|r 457 LASLMGIRVIHVLTHDSIG-L-G-----EDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKE-----KNRPS 524 (673)
Q Consensus 457 ~~al~~~~v~~v~th~gi~-~-G-----~DGpTHq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~-----~~gP~ 524 (673)
.++-|..+-.+++.-+|=. + | +||-|| -+...+|||.-+.|+.+.|++.+++..++. .+--.
T Consensus 624 AAgD~~aRGFLlGaTAGRTTLnGEGLQHqDGHSh------llAstiPnc~sYDPafaYElavIv~~Gl~rMy~~~edvfY 697 (898)
T PRK13012 624 AAADQRARGFLLGATAGRTTLGGEGLQHQDGHSH------LAASTIPNCRAYDPAFAYELAVIVDDGMRRMYEEQEDVFY 697 (898)
T ss_pred HHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHH------HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 7421113515640256742036664456776126------8876456530047533666699999999999857986799
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCEEEEEC---CCCCEEEEECCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCHHCC
Q ss_conf 99952444433456655322123473799856---997299995268899999999999973-99439985746581000
Q gi|254780655|r 525 VLSLSRQNLPFLRTQYESNNLCALGAYDYIST---PNAQVTIFSSGSELKIAVEACEILSSR-NISTRVVSVPCFELFFE 600 (673)
Q Consensus 525 ~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~---~~~dv~iia~G~~v~~al~aa~~L~~~-Gi~~~Vi~~~s~k~ld~ 600 (673)
||.+...+.+.........+.+.+|.|.+... +++.|.|+++|+.+.++++|+++|+++ ||.+.|+|++|++.|.+
T Consensus 698 YiTv~NENY~qPamPeg~eeGIiKGmY~~~~~~~~~~~~VqLLGSG~Il~evi~AaeiL~~d~gV~adVWSvTSf~ELrR 777 (898)
T PRK13012 698 YLTVMNENYAQPALPEGAEEGILKGMYRLRAAAAAEAPRVQLLGSGAILREVLAAARLLADDWGVDADVWSVTSFTELRR 777 (898)
T ss_pred EEEECCCCCCCCCCCCCCHHHHHHCCEECCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHH
T ss_conf 98404646658688997477686310442336778995389992569999999999999984298620672488899998
Q ss_pred ----------------CCHHHHHHHCCCC-CEEEEECCC---CHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHCCCCH
Q ss_conf ----------------8688999643679-779997286---02789998457981898357767688889999809998
Q gi|254780655|r 601 ----------------QSDSYRAQIIGSS-PIKIAIEAG---LRQGWDAFIGSDGSFIGMQGFGASGSCDLLYQHFGINA 660 (673)
Q Consensus 601 ----------------~~~~~~~~il~~~-~~~vtiE~g---~~~g~~~~~~~~~~~igid~Fg~sg~~~el~~~~Gld~ 660 (673)
+...|+.++|... .++|++.+. +...+..|+.....++|.|.||.|.+++.|.++|.+|+
T Consensus 778 da~~~eR~N~LhP~~~~r~syv~~~L~~~~gPvVAaSDYmra~pdqIr~~vp~~y~vLGTDGFGRSDTR~~LR~fFEVDa 857 (898)
T PRK13012 778 DGLAAERANLLGPAEEPRVPYVTQCLAGTRGPVIAATDYVRAVPEQIRAFVPRRYVTLGTDGFGRSDTRAALRRFFEVDR 857 (898)
T ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCEEEECHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHCCCCH
T ss_conf 79999999840998777777899983799998799677687649999984689865635888875425799998746378
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999999848
Q gi|254780655|r 661 IAIVDMVERKLS 672 (673)
Q Consensus 661 ~~I~~~i~~~L~ 672 (673)
++|+-+++..|+
T Consensus 858 ~~IVvAaL~aLa 869 (898)
T PRK13012 858 HSIVLAALKALA 869 (898)
T ss_pred HHHHHHHHHHHH
T ss_conf 899999999999
No 18
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase; InterPro: IPR005477 DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. DXP synthase is found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis . In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding . This family includes transketolase enzymes 2.2.1.1 from EC. and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0008661 1-deoxy-D-xylulose-5-phosphate synthase activity, 0016114 terpenoid biosynthetic process.
Probab=100.00 E-value=0 Score=530.91 Aligned_cols=558 Identities=22% Similarity=0.369 Sum_probs=467.1
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECC
Q ss_conf 99887676433468888999999999999999999738897643136899999984332544577898878877998565
Q gi|254780655|r 1 MGHPVGGRNVVLMKYDDDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAG 80 (673)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~G 80 (673)
+++|...+.... ++++++|+++|...++.++. ++||+++++|++|+++++|. .|+ +| +|+|+||.|
T Consensus 4 ~~~~~~l~~~~~----~~l~~~~~~~~~~~~~~~~~-~~g~~~~~lg~~~l~~~~~~---~~~--~~----~~~~~wd~g 69 (627)
T TIGR00204 4 LNSPSDLKLLSI----DELEKLCDELREYLLESVSA-SGGHLGPGLGVVELTVALHY---LFD--TP----KDPLIWDVG 69 (627)
T ss_pred CCCCHHHCCCCH----HHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHH---HHC--CC----CCCEEEECC
T ss_conf 556123124664----46789999999988876530-46533344423345655676---542--76----433033134
Q ss_pred CCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 20189999999707688998898640003887988988889987306888631479999999999998534268876784
Q gi|254780655|r 81 HGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDH 160 (673)
Q Consensus 81 H~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~ 160 (673)
|++ |+|+.++|+. +++.++|+.++ +.|+|.+.++.++.+.+||..++++.++|+|.+.... +. +.
T Consensus 70 ~~~---y~~~~l~g~~----~~~~~~~~~~g-~~~~~~~~~~~~d~~~~g~~~~~~~~g~g~~~~~~~~-~~------~~ 134 (627)
T TIGR00204 70 HQA---YPHKLLTGRG----EEFSTLRQKDG-LHGFPKRSESEYDVFGAGHSSTSISAGLGVALARDLK-GA------DG 134 (627)
T ss_pred CHH---HHHHHHHCCC----HHHHHHHHCCC-CCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHH-CC------CC
T ss_conf 202---2344441241----13344443056-6777776542210001254310123344456665431-13------66
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCCCCCCC----------------------------
Q ss_conf 59998436211434455788765220-2233069996276322322355678----------------------------
Q gi|254780655|r 161 YTYVLVGDGCLMEGISQEAISFAGHL-GLSKLIVLWDNNGISIDGPISLADS---------------------------- 211 (673)
Q Consensus 161 ~v~~iiGDG~l~eG~~~EAl~~A~~~-~l~nli~i~d~N~~si~~~~~~~~~---------------------------- 211 (673)
+++|++|||+++.|+++||+|++|.. + ..+++++++|.++++.++.....
T Consensus 135 ~~~~~~gdg~~~~g~~~~~~~~~g~~p~-~~~~~~l~d~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~ 213 (627)
T TIGR00204 135 KPVCLIGDGALTGGLALEALNHAGDLPK-TDLLVILNDNEMSISPNVGALSNHLGRLRSGSLYQSLRDGLKKLLKKLPPV 213 (627)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCC-CCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 1367641530123467776664125677-653888737532224432478888887640210234553467876414510
Q ss_pred --------------------CCHHHHHHHCCCCCCC-CCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCC-C
Q ss_conf --------------------2179988641444444-44440678888888751102210222013345557000477-1
Q gi|254780655|r 212 --------------------TDQYARFRASGWNTLS-VNGHDHHAITSTLRKAQLSDKPTMIACETVIGFGSPNRAGT-N 269 (673)
Q Consensus 212 --------------------~~~~~~~~a~Gw~~~~-vdG~d~~~i~~a~~~ak~~~kP~~I~~~T~kG~G~~~~e~~-~ 269 (673)
.+....|+..|++++. +|||++.++...++.++....|.++++.|.+|+|+...+.+ .
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~lg~~y~gp~~g~~~~~~~~~~~~~~~~~gp~~~~~~~~~g~gy~~~~~~~~ 293 (627)
T TIGR00204 214 GNYLAPLAERVEESLKGLLVPPVGTLFEELGFNYLGPVDGHDLSELIETLKNAKKLKGPVLLHVSTKKGKGYKPAEKDPI 293 (627)
T ss_pred HHHHHHHHHHHHHHHCEECCCCCHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCC
T ss_conf 13556778876653200001430023343054100665653078999988876523785378876215776443345523
Q ss_pred C-CCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH-HCCCCCH
Q ss_conf 1-0334372233212566348777854389789999997543335668876424676311111002300111-0776302
Q gi|254780655|r 270 K-VHGSALGQEEIKATRKALNWDLDPFFIPDDIMKKWRLAGLRSSQTRADWQERLSSMKSSIRKEFERRFSD-ALPDCFD 347 (673)
Q Consensus 270 ~-~HG~~l~~ee~~~~~k~lg~~~~~f~ip~~v~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~e~~~~~~~-~~p~~~~ 347 (673)
. ||+.+ ||.... + ..|..
T Consensus 294 ~~~~~~~------------------~~~~~~----------------------------------------g~~~~~~-- 313 (627)
T TIGR00204 294 GTWHGVG------------------PFDLST----------------------------------------GKLLPKS-- 313 (627)
T ss_pred CEECCCC------------------CCCCCC----------------------------------------CCCCCCC--
T ss_conf 2002567------------------656443----------------------------------------3102355--
Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHH
Q ss_conf 35554200000135543101346788899886554332203455567400026663445432001003257620023567
Q gi|254780655|r 348 NAFINLKKKFEHSKPMIATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAMAAA 427 (673)
Q Consensus 348 ~~~~~~~~~~~~~~~~vatr~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~p~r~i~~GIaE~~~~~~ 427 (673)
.....+..+.++.++..+++.++++++.++.+...++. ..+.+.||.||+|+||+|||++++
T Consensus 314 ------------~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~------~~~~~~~p~~~~d~~~~~~~~~~~ 375 (627)
T TIGR00204 314 ------------KSAPPSYSKLFGDTLCELAKKDGKIVGITPAMPEGSGL------DKLSDKFPDRYFDVGIAEQHAVTL 375 (627)
T ss_pred ------------CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCH------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ------------45566413555567887753056525520122223314------688875003454233323455666
Q ss_pred HHHHHHCCCCCCEECCCHHHHHHHHHH-HHHHHHHHCCCEEECCCCCCCCCCCCCHHHHCCCCCHHHHHCCCCEEEECCH
Q ss_conf 879987288762200100355530012-4541111000013024543333333310100022210111012211211201
Q gi|254780655|r 428 MNGIALHKGLAPYSGTFMVFSDYSRPA-IRLASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHLAALRAIPDLLVLRPADS 506 (673)
Q Consensus 428 aaGla~~~g~~p~~~tf~~F~~~~~~~-ir~~al~~~~v~~v~th~gi~~G~DGpTHq~iedia~lr~iPnl~v~~P~d~ 506 (673)
++|++. +|++|++++|++|++|+||+ +|+.|++++|+.++.++.|+ +|+||+|||+++|++++|++||+.++.|.|.
T Consensus 376 ~~~~~~-~g~~p~~~~y~~~l~~~yd~~~~d~~~~~~p~~~~~d~~g~-~g~dg~~~~g~~d~~~~~~~p~~~~~~p~d~ 453 (627)
T TIGR00204 376 AAGLAI-EGYKPFVAIYSTFLQRAYDQVVHDVCIQNLPVFFAIDRAGI-VGADGETHQGLFDISYLRCIPNLVLMAPKDE 453 (627)
T ss_pred HHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCC-CCCCCCCCCCHHHHHHHHHCCCCEEECCCCH
T ss_conf 655542-24303788888887666677888777630550244123342-1477641021355677653130013236634
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCC
Q ss_conf 24577776520256783499952444433456655322123473799856997299995268899999999999973994
Q gi|254780655|r 507 IETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNIS 586 (673)
Q Consensus 507 ~E~~~~~~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~ 586 (673)
+|+..++.++..+.++|.++|+||++....+......+.+..|++.+++. +.++.++++|+.+..++++++.|.++|++
T Consensus 454 ~~~~~~~~~~~~~~~~p~~~~~p~g~~~g~~~~~~~~~~~~~g~~~~~~~-g~~~~~~~~g~~~~~~~~~~~~l~~~~~~ 532 (627)
T TIGR00204 454 NELRQMLYTGYEYDGGPIAVRYPRGNGLGVELTPEPWEGLPIGKSELLRK-GGDLLLLGFGTLVPPALEVAEALNEEGLE 532 (627)
T ss_pred HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCC-CCCEEEEECCCHHHHHHHHHHHHHHCCCE
T ss_conf 56666665311147752045314655333433213543221240231037-77468873352135788999987533760
Q ss_pred EEEEECCCCCHHCCCCHHHHHHHCCCCCEEEEEC-----CCCHHHHHHHHCCCC-CE-----EEE-CCCCCCCCHHHHHH
Q ss_conf 3998574658100086889996436797799972-----860278999845798-18-----983-57767688889999
Q gi|254780655|r 587 TRVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIE-----AGLRQGWDAFIGSDG-SF-----IGM-QGFGASGSCDLLYQ 654 (673)
Q Consensus 587 ~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE-----~g~~~g~~~~~~~~~-~~-----igi-d~Fg~sg~~~el~~ 654 (673)
++++++++++|+|. .....+...+..++++| +|.+.++.+++..++ .. +|+ |.|..+|+..++..
T Consensus 533 ~~~~~~~~~~p~d~---~~~~~~~~~~~~~~~~~~~~~~gg~g~~~~~~~~~~~~~~~p~~~~g~pd~~~~~~~~~~~~~ 609 (627)
T TIGR00204 533 ATLVDLRFVKPLDE---ELILPLAAPHGKLVTLEENALLGGFGSAVLEFLSDQGEKLTPLKRLGLPDEFIPHGTPEELLA 609 (627)
T ss_pred EEEECHHHHCCCCH---HHHHHHHHCCCCEEEEECCHHCCCHHHHHHHHHHHCCCCCCHHHHHCCCHHHHCCCCHHHHHH
T ss_conf 56520022031346---889988630330355301101032046889988624740002444144124431564677887
Q ss_pred HCCCCHHHHHHHHHHHHC
Q ss_conf 809998999999999848
Q gi|254780655|r 655 HFGINAIAIVDMVERKLS 672 (673)
Q Consensus 655 ~~Gld~~~I~~~i~~~L~ 672 (673)
..|+|.+++.++++..+.
T Consensus 610 ~~gl~~~~~~~~~~~~~~ 627 (627)
T TIGR00204 610 DLGLDTAGLADKILALLG 627 (627)
T ss_pred HHCCCHHHHHHHHHHHCC
T ss_conf 625776788999987419
No 19
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=100.00 E-value=0 Score=515.29 Aligned_cols=629 Identities=21% Similarity=0.257 Sum_probs=469.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC------CCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHH
Q ss_conf 8999999999999999999738------8976431368999999843325445778988788779985652018999999
Q gi|254780655|r 17 DDYKKMADAIRFLSMDAIENVN------SGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYALL 90 (673)
Q Consensus 17 ~~l~~~a~~iR~~~~~~v~~a~------~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~~ 90 (673)
+..+|+...|||+++.||.+|| |||+++..|++.|+-+-|.+|++=.. ++ ...| +|+-.||.||++||.-
T Consensus 73 ~lE~rir~~iRWNA~aMV~rAnk~~~~lGGHIstyaSaAtLyEVGFNHFfr~~~-~~--~~GD-lv~fQGHssPGiYARA 148 (889)
T TIGR03186 73 QLEERLAAILRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRAAG-DA--SGGD-LVYFQPHSAPGVYARA 148 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCC-CC--CCCC-EEEECCCCCCHHHHHH
T ss_conf 999999999988999999970378898674187688789999741441664799-99--9988-7987588871688999
Q ss_pred HHCCCCCCCHHHHHHHHCC--CCCCCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 9707688998898640003--887988--988889987306888631479999999999998534268876784599984
Q gi|254780655|r 91 YLLGYQDVTIEDIKNFRTI--GSKTAG--HPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLV 166 (673)
Q Consensus 91 ~l~G~~~~~~e~l~~~r~~--~s~~~G--hpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~ii 166 (673)
+|.|| ++.++|.+||+- +..++. || +-+.++++|.|.|+|-|--+|+..|.-.|||..|.-.+.-+.+|||++
T Consensus 149 fLEGR--Lse~qL~nFRqE~~g~GLsSYPHP-~lMPdfWqFPTVSMGLGPi~aIYQArf~kYL~~Rgl~~~~~~kVWafl 225 (889)
T TIGR03186 149 FLEGF--LSDAQLAHYRQEIAGPGLCSYPHP-WLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFF 225 (889)
T ss_pred HHCCC--CCHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf 87067--899999766653059998999986-668654677752666348889999999999986699876788289993
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC--CCCHHHHHHHCCCCCCCC----------------
Q ss_conf 36211434455788765220223306999627632232235567--821799886414444444----------------
Q gi|254780655|r 167 GDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLAD--STDQYARFRASGWNTLSV---------------- 228 (673)
Q Consensus 167 GDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~--~~~~~~~~~a~Gw~~~~v---------------- 228 (673)
|||||.|..+.-|+++|+..||||||+++|||-+.+||||..-- ...+...|++.|||||+|
T Consensus 226 GDGEmDEPEs~gai~lA~rE~LDNLifVvNCNLQRLDGPVrGNgkIiqELE~~FrGAGWnVIKviWG~~WD~Ll~~D~~G 305 (889)
T TIGR03186 226 GDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFARDATG 305 (889)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHCCCC
T ss_conf 58766871333332156660577769999567654688846852888998877355885269986678578998528856
Q ss_pred -----------------------------------------------------CCCCHHHHHHHHHHHHH-CCCCHHHHH
Q ss_conf -----------------------------------------------------44406788888887511-022102220
Q gi|254780655|r 229 -----------------------------------------------------NGHDHHAITSTLRKAQL-SDKPTMIAC 254 (673)
Q Consensus 229 -----------------------------------------------------dG~d~~~i~~a~~~ak~-~~kP~~I~~ 254 (673)
.|||...++.|+++|.+ .++||+|.+
T Consensus 306 ~L~~rm~e~vDG~yQ~~~a~~Gay~Re~fFg~~pel~~lv~~~sD~~i~~L~RGGHDp~KvyAAy~~A~~hkG~PTVILa 385 (889)
T TIGR03186 306 ALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVRHEGRPTVILA 385 (889)
T ss_pred HHHHHHHHCCCHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 79999885447287876346789999998089989999985089999986015799829999999999857899859984
Q ss_pred CCCCCCCC-CCCCCCCCCCC-CCCCHHHHHHHHHHCCCCCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13345557-00047711033-43722332125663487778-------54389789999997543335668876424676
Q gi|254780655|r 255 ETVIGFGS-PNRAGTNKVHG-SALGQEEIKATRKALNWDLD-------PFFIPDDIMKKWRLAGLRSSQTRADWQERLSS 325 (673)
Q Consensus 255 ~T~kG~G~-~~~e~~~~~HG-~~l~~ee~~~~~k~lg~~~~-------~f~ip~~v~~~~~~~~~~~~~~~~~w~~~~~~ 325 (673)
+|+||+|. +..|+....|+ +.|+.|+++.+|+.|++|.. ||+.|++--...++.. ++-+.
T Consensus 386 kTvKGyGlG~~~eg~N~tHQ~KKl~~~~L~~fRdrf~iPisD~~le~~pfy~P~~dS~E~~Yl~-----------~rR~~ 454 (889)
T TIGR03186 386 KTMKGFGMGAIGQGRMTTHQQKKLDVEALLAFRDRFRLPLSDADVEQLKFYKPDEDSAEMRYLH-----------ARRAA 454 (889)
T ss_pred ECEEECCCCHHHHCCCHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCHHHHHHH-----------HHHHH
T ss_conf 2324356461441113443244599999999999849998845650389989999988999999-----------99997
Q ss_pred HHHHHHHCCCCHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH---HHHHHCCCCC---------CC
Q ss_conf 31111100230011107763023555420000013554310134678889988655---4332203455---------56
Q gi|254780655|r 326 MKSSIRKEFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSELVLEVVNDCL---PELIGGSADL---------TG 393 (673)
Q Consensus 326 ~~~~~~~e~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vatr~a~g~~l~~i~~~~---p~iv~~sADl---------~~ 393 (673)
....+|....+ ....++..-...+..+.. ...+..++|..+|..+|..+.+.- ++||-+-+|- ..
T Consensus 455 LGG~lP~R~~~-~~~~l~~P~l~~f~~~~~--~s~~re~STTMafVRlL~~Llkdk~iG~riVPIvpDEARTFGMe~lFr 531 (889)
T TIGR03186 455 LGGYLPRRRTA-ATHALAVPALPSWGRFAL--DAEGKEMSTTMAIVRMLGALLKDAELGPRIVPIVADEARTFGMANLFR 531 (889)
T ss_pred CCCCCCCCCCC-CCCCCCCCCHHHHHHHHC--CCCCCEEEHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHH
T ss_conf 49989865767-887889978689999854--788852327999999999996082657746654467410357476664
Q ss_pred CCCCCCCCCCCCC----------CCCCHHHCCCCCCCHHHHHH--HHHHHHH--CC-CCCCEECCCHHH-HHHHHHHHHH
Q ss_conf 7400026663445----------43200100325762002356--7879987--28-876220010035-5530012454
Q gi|254780655|r 394 SNGTKTSQMKAIS----------KSDFSGRYLHYGVREHAMAA--AMNGIAL--HK-GLAPYSGTFMVF-SDYSRPAIRL 457 (673)
Q Consensus 394 St~~~~~~~~~~~----------~~~~p~r~i~~GIaE~~~~~--~aaGla~--~~-g~~p~~~tf~~F-~~~~~~~ir~ 457 (673)
..+++....+.+. ++.-.||.++.||.|..+.+ +|+|-|. |+ .++||+.-|++| +||.-|.+.-
T Consensus 532 q~GIYs~~GQ~Y~PvD~~~l~~YkE~~~GQILeEGInEAGa~sswiAAaTsYsth~~pmIPfYIfYSMFGFQRvGDl~WA 611 (889)
T TIGR03186 532 QVGIYSPLGQRYEPEDLGSMLYYREDTDGQILEEGISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFGFQRIGDLIWA 611 (889)
T ss_pred HCCCCCCCCCCCCCCCHHHHHEEEECCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCCHHHH
T ss_conf 31532789863675433244101336887523304023302899999875110389521489999987513212533776
Q ss_pred HHHHHCCCEEECCCCCCCC--C-----CCCCHHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCC-----CCCCEE
Q ss_conf 1111000013024543333--3-----333101000222101110122112112012457777652025-----678349
Q gi|254780655|r 458 ASLMGIRVIHVLTHDSIGL--G-----EDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKE-----KNRPSV 525 (673)
Q Consensus 458 ~al~~~~v~~v~th~gi~~--G-----~DGpTHq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~-----~~gP~~ 525 (673)
++-|..+-.+++.-+|-.+ | +||-|| -+...+|||..+.|+.+.|++.+++..+.. .+--.|
T Consensus 612 AgD~raRGFLiGaTAGRTTLnGEGLQHqDGHSh------llAstiPnc~sYDPafaYElAvIi~dGl~RMy~~~edvfYY 685 (889)
T TIGR03186 612 AADQRARGFLIGATSGKTTLGGEGLQHQDGTSH------LAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYY 685 (889)
T ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHH------HHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 302103653787404544235553211662078------88653787501065220022798999999998668874787
Q ss_pred EEECCCCCCCCCCCCCC----CCCCCCCCEEEEEC--CCCCEEEEECCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCHH
Q ss_conf 99524444334566553----22123473799856--997299995268899999999999973-994399857465810
Q gi|254780655|r 526 LSLSRQNLPFLRTQYES----NNLCALGAYDYIST--PNAQVTIFSSGSELKIAVEACEILSSR-NISTRVVSVPCFELF 598 (673)
Q Consensus 526 ir~~R~~~p~~~~~~~~----~~~~~~G~~~~~~~--~~~dv~iia~G~~v~~al~aa~~L~~~-Gi~~~Vi~~~s~k~l 598 (673)
|.+-..+.+........ .+.+.+|.|.+... ..+.|.|+++|+.+.++++|+++|+++ ||.+.|+|++|++.|
T Consensus 686 iTv~NEny~~P~mP~~~~~~v~~gI~kG~Y~~~~~~~~~~~vqLlgSG~il~ev~~Aa~iL~~d~gV~adVWSvTS~~EL 765 (889)
T TIGR03186 686 LTVTNENYAQPSLPEDRLDAVRRGILKGMYPLDPAALAAARVQLLGSGAILGEVQAAARLLRDDWGIDAAVWSVTSFTEL 765 (889)
T ss_pred EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHH
T ss_conf 63035455687899982667860245643203545678963799915799999999999998720996417825888999
Q ss_pred CCC----------------CHHHHHHHCCCC-CEEEEECCC---CHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHCCC
Q ss_conf 008----------------688999643679-779997286---027899984579818983577676888899998099
Q gi|254780655|r 599 FEQ----------------SDSYRAQIIGSS-PIKIAIEAG---LRQGWDAFIGSDGSFIGMQGFGASGSCDLLYQHFGI 658 (673)
Q Consensus 599 d~~----------------~~~~~~~il~~~-~~~vtiE~g---~~~g~~~~~~~~~~~igid~Fg~sg~~~el~~~~Gl 658 (673)
.+. ...|..+.|... .++|++.+. +...+..|+.....++|.|.||.|.+++.|.++|.+
T Consensus 766 ~Rd~~~~er~n~LhP~~~~~~~yv~~~L~~~~gPvvAasDymr~~~dqIr~~vp~~y~~LGTDGFGrSDTR~~LR~fFeV 845 (889)
T TIGR03186 766 ARDGRAAERAQRLGDAERPPSPHVAQALGATQGPVIAATDYVRAVPELIRAYVPRRYVTLGTDGFGRSDTRAALRAFFEV 845 (889)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCEEEECHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHCCC
T ss_conf 87699999998609987777787999827999987996766665699999746998757348888754157999987582
Q ss_pred CHHHHHHHHHHHHC
Q ss_conf 98999999999848
Q gi|254780655|r 659 NAIAIVDMVERKLS 672 (673)
Q Consensus 659 d~~~I~~~i~~~L~ 672 (673)
|+.+|+-+++..|+
T Consensus 846 D~~~IvvaAL~~La 859 (889)
T TIGR03186 846 DRASIVIAALQALA 859 (889)
T ss_pred CHHHHHHHHHHHHH
T ss_conf 88999999999999
No 20
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=0 Score=504.29 Aligned_cols=237 Identities=38% Similarity=0.622 Sum_probs=226.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHC
Q ss_conf 88889999999999999999997388976431368999999843325445778988788779985652018999999970
Q gi|254780655|r 14 KYDDDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYALLYLL 93 (673)
Q Consensus 14 ~~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~~~l~ 93 (673)
....+|++.|.+||..++.|+..+++||+|+|||++||+.+||.+.|+++|++|.|.+|||||+|+||++|++|+.|...
T Consensus 5 ~~~~~L~~~A~~iRr~~v~m~~~~~~GH~G~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLSKGHaa~AlYa~Lae~ 84 (243)
T COG3959 5 LSVDELERIAREIRRNIVRMLANAGSGHVGGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILSKGHAAPALYATLAEK 84 (243)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHC
T ss_conf 22799999999999999998632678875762109999999999872668788877777769983664138999999981
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf 76889988986400038879889888899873068886314799999999999985342688767845999843621143
Q gi|254780655|r 94 GYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLME 173 (673)
Q Consensus 94 G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~e 173 (673)
|| ++.|+|.+|++.+|++||||++..+||+|.||||||||||+|+|||++.|..+. +++|||++|||||+|
T Consensus 85 G~--~p~eeL~~~~~~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~-------~~~VyvilGDGEl~E 155 (243)
T COG3959 85 GY--FPEEELETFRRIGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGS-------PYRVYVILGDGELDE 155 (243)
T ss_pred CC--CCHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHCCC-------CCEEEEEECCCCCCC
T ss_conf 89--888999975168985889976578986562687655661078888888765289-------844999955754366
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC-CCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCC-CCHH
Q ss_conf 44557887652202233069996276322322355678-217998864144444444440678888888751102-2102
Q gi|254780655|r 174 GISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADS-TDQYARFRASGWNTLSVNGHDHHAITSTLRKAQLSD-KPTM 251 (673)
Q Consensus 174 G~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~-~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak~~~-kP~~ 251 (673)
|++|||++.|+|++|+|||.|+|.|++|+||.+...++ +|+..||+||||+|++|||||+++|..|+++++..+ ||++
T Consensus 156 G~~WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~~~rP~~ 235 (243)
T COG3959 156 GQVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGSKGRPTV 235 (243)
T ss_pred CCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHCCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEE
T ss_conf 52799999998705376799994587424776543268520078888438068997584799999999841135899869
Q ss_pred HHHCCCCC
Q ss_conf 22013345
Q gi|254780655|r 252 IACETVIG 259 (673)
Q Consensus 252 I~~~T~kG 259 (673)
|+++|+||
T Consensus 236 IIa~Tvkg 243 (243)
T COG3959 236 IIAKTVKG 243 (243)
T ss_pred EEEECCCC
T ss_conf 99735659
No 21
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=0 Score=500.71 Aligned_cols=294 Identities=27% Similarity=0.411 Sum_probs=267.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECC
Q ss_conf 31013467888998865543322034555674000266634454320010032576200235678799872887622001
Q gi|254780655|r 364 IATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGT 443 (673)
Q Consensus 364 vatr~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~t 443 (673)
.+.|+.+|+.|..+++.++++|+++||+.+||++. .|.++||+|||++||+||+|+++|||||+ +|++||++|
T Consensus 7 ~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~~~------~f~~~fPdR~~NvGIaEQ~mvg~AAGLA~-~Gk~Pfv~t 79 (312)
T COG3958 7 ESLRKVYGETLAELGRKNSDIVVLDADLSSSTKTG------YFAKEFPDRFFNVGIAEQDMVGTAAGLAL-AGKKPFVST 79 (312)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH------HHHHHCCHHHEECCHHHHHHHHHHHHHHH-CCCCCEEEC
T ss_conf 67899999999998733899799964531341105------78886754514424678889999988874-488743641
Q ss_pred CHHHHH-HHHHHHHH-HHHHHCCCEEECCCCCCCCCCCCCHHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCC
Q ss_conf 003555-30012454-1111000013024543333333310100022210111012211211201245777765202567
Q gi|254780655|r 444 FMVFSD-YSRPAIRL-ASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKN 521 (673)
Q Consensus 444 f~~F~~-~~~~~ir~-~al~~~~v~~v~th~gi~~G~DGpTHq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~ 521 (673)
|++|+. |+|+|||+ .|++++||+++.||+|++.|+||+|||++||+++||.+|||.|+.|||+.|++.++.++.++ +
T Consensus 80 fa~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq~~EDiaimR~lpn~~V~~P~D~v~~~~i~~~~~~~-~ 158 (312)
T COG3958 80 FAAFLSRRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQALEDIAIMRGLPNMTVIAPADAVETRAILDQIADY-K 158 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHC-C
T ss_conf 589987779999999861026973899925874258888641167899998607885587048589999999999860-7
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCC
Q ss_conf 83499952444433456655322123473799856997299995268899999999999973994399857465810008
Q gi|254780655|r 522 RPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQ 601 (673)
Q Consensus 522 gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~ 601 (673)
||+|+|+.|.++|..-.. ..+.|++|++.+++ +|+|++||++|.||++|++||++|+++||+++||||+++||+|++
T Consensus 159 GP~Y~Rl~R~~~p~~~~~--~~~~F~iGka~vLr-dG~D~tiiA~G~mv~~al~AA~~L~~~GIsa~Vi~m~tIKPiD~~ 235 (312)
T COG3958 159 GPVYMRLGRGKVPVVVDE--GGYTFEIGKANVLR-DGSDLTIIATGVMVAEALEAAEILKKEGISAAVINMFTIKPIDEQ 235 (312)
T ss_pred CCEEEEECCCCCCCEECC--CCCEEECCCEEEEE-CCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH
T ss_conf 977998057788850337--87257336346764-177269995171669999999999866988799864766778789
Q ss_pred CHHHHHHHCCCCCEEEEEC-----CCCHHHHHHHHCCCC----CEEEE-CCCCCCCCHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 6889996436797799972-----860278999845798----18983-5776768888999980999899999999984
Q gi|254780655|r 602 SDSYRAQIIGSSPIKIAIE-----AGLRQGWDAFIGSDG----SFIGM-QGFGASGSCDLLYQHFGINAIAIVDMVERKL 671 (673)
Q Consensus 602 ~~~~~~~il~~~~~~vtiE-----~g~~~g~~~~~~~~~----~~igi-d~Fg~sg~~~el~~~~Gld~~~I~~~i~~~L 671 (673)
.. .+.......+||+| +|+++.+++++.+++ +.+|+ ++||.||+.++|+++||||+++|++++++++
T Consensus 236 ~i---~~~A~~t~~IvT~EeHsi~GGlGsaVAEvlse~~p~~~~riGvp~~fg~sg~~~~Ll~~ygl~~~~I~~~v~~~~ 312 (312)
T COG3958 236 AI---LKAARETGRIVTAEEHSIIGGLGSAVAEVLSENGPTPMRRIGVPDTFGRSGKADELLDYYGLDPESIAARVLELL 312 (312)
T ss_pred HH---HHHHHHCCCEEEEECCEEECCHHHHHHHHHHHCCCCCEEEECCCCHHCCCCCHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 99---998742583899863322356269999999861996368832773121223569999981999999999999659
No 22
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=100.00 E-value=0 Score=426.60 Aligned_cols=270 Identities=27% Similarity=0.326 Sum_probs=239.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC------CCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHH
Q ss_conf 8999999999999999999738------8976431368999999843325445778988788779985652018999999
Q gi|254780655|r 17 DDYKKMADAIRFLSMDAIENVN------SGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYALL 90 (673)
Q Consensus 17 ~~l~~~a~~iR~~~~~~v~~a~------~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~~ 90 (673)
|..+|+...|||+++.||.+|| |||++++.|+++|+.+||.+|++-. +.+...|| |+++||+||++||..
T Consensus 2 e~E~ri~~~~rwna~~~v~ra~~~~~~vGGH~as~aS~ati~~v~~~h~~r~~---~~~~~~D~-V~~qgHasP~~yA~~ 77 (386)
T cd02017 2 EIERRIRSLIRWNAMAMVHRANKKDLGIGGHIATFASAATLYEVGFNHFFRAR---GEGGGGDL-VYFQGHASPGIYARA 77 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC---CCCCCCCE-EEECCCCCHHHHHHH
T ss_conf 58999999999999999984557889878806608989999999878875688---88998887-886687678999999
Q ss_pred HHCCCCCCCHHHHHHHHCCC--CCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 97076889988986400038--8798898888998-73068886314799999999999985342688767845999843
Q gi|254780655|r 91 YLLGYQDVTIEDIKNFRTIG--SKTAGHPEYGSCA-GIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVG 167 (673)
Q Consensus 91 ~l~G~~~~~~e~l~~~r~~~--s~~~Ghpe~~~~~-~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiG 167 (673)
+|.|+ ++.|+|.+||+.. +.+++||.+...| +++|+|||+|+|..+|+++|+++||+..+...+..++||||++|
T Consensus 78 ~L~Gr--l~~e~L~~fR~e~~~~Gl~syP~p~~~p~~~~f~TgSmGlG~~~ai~~A~~~rYl~~rg~~~~~~~rv~~~~G 155 (386)
T cd02017 78 FLEGR--LTEEQLDNFRQEVGGGGLSSYPHPWLMPDFWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLG 155 (386)
T ss_pred HHHCC--CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEC
T ss_conf 98379--9989997650335799888999988898502167777773689999999999999864888877773899962
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC--CCCCHHHHHHHCCCCCCCC-----------------
Q ss_conf 621143445578876522022330699962763223223556--7821799886414444444-----------------
Q gi|254780655|r 168 DGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLA--DSTDQYARFRASGWNTLSV----------------- 228 (673)
Q Consensus 168 DG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~--~~~~~~~~~~a~Gw~~~~v----------------- 228 (673)
||||+||.+|||+.+|++++|+|||+|+|+|.+++||+|... ....+...|+++||+||+|
T Consensus 156 DgEldEg~~~eAi~~a~~~~LdNL~~vvd~N~Q~LDgpV~gn~kiiqele~~F~~aGW~VIkv~wG~~wd~lf~~d~~g~ 235 (386)
T cd02017 156 DGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSKWDELLAKDGGGA 235 (386)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCCCCCH
T ss_conf 52115098999999999847797799995698656752267632589999999877980898532214999976787546
Q ss_pred ----------------------------------------------------CCCCHHHHHHHHHHHHH-CCCCHHHHHC
Q ss_conf ----------------------------------------------------44406788888887511-0221022201
Q gi|254780655|r 229 ----------------------------------------------------NGHDHHAITSTLRKAQL-SDKPTMIACE 255 (673)
Q Consensus 229 ----------------------------------------------------dG~d~~~i~~a~~~ak~-~~kP~~I~~~ 255 (673)
.|||+.+|++|+++|.. .+|||+|+++
T Consensus 236 L~~~m~e~~dg~yQ~~~~~~Ga~~Re~ffg~~pel~~lv~~lsD~dl~~L~rGGHD~~kl~aAy~~A~~~~grPTVIlA~ 315 (386)
T cd02017 236 LRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELKALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVEHKGKPTVILAK 315 (386)
T ss_pred HHHHHHHCCCHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 99998866788889887247599999980898889999850788789987628999899999999998479998799977
Q ss_pred CCCCCCCCC-CCCCCCCCC-CCCCHHHHHHHHHHCCCCC
Q ss_conf 334555700-047711033-4372233212566348777
Q gi|254780655|r 256 TVIGFGSPN-RAGTNKVHG-SALGQEEIKATRKALNWDL 292 (673)
Q Consensus 256 T~kG~G~~~-~e~~~~~HG-~~l~~ee~~~~~k~lg~~~ 292 (673)
|+||+|.+. -|+.+..|+ +.|+.|+++.+|+.+++|.
T Consensus 316 TvKG~Glg~age~~N~aHq~Kkl~~~~l~~fRdr~~iPi 354 (386)
T cd02017 316 TIKGYGLGAAGEGRNHAHQVKKMTEDELKALRDRFGIPV 354 (386)
T ss_pred EEECCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCC
T ss_conf 441278881336765544431599999999999749999
No 23
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=100.00 E-value=0 Score=412.63 Aligned_cols=194 Identities=27% Similarity=0.449 Sum_probs=176.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf 89764313689999998433254457789887887799856520189999999707688998898640003887988988
Q gi|254780655|r 39 SGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPE 118 (673)
Q Consensus 39 ~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe 118 (673)
|||||++||++||+++||. +||+ +|||||||+||+| |++++++|+ .++|.+||+.++ ++|||+
T Consensus 1 GGH~G~slS~vdi~~~Ly~---~~~~------~rDrfilSkGH~a---y~~~~l~~~----~~~~~~~~~~~~-l~ghp~ 63 (195)
T cd02007 1 GGHLGSNLGVVELTLALHY---VFDS------PKDKIIWDVGHQA---YPHKILTGR----RDQFHTLRQYGG-LSGFTK 63 (195)
T ss_pred CCCCCCCHHHHHHHHHHHH---HCCC------CCCCEEEECCHHH---HHHHHHHCC----HHHHCCCCCCCC-CCCCCC
T ss_conf 9952724799999999987---3189------9982898372489---999999677----534340100699-899887
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 88998730688863147999999999999853426887678459998436211434455788765220223306999627
Q gi|254780655|r 119 YGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNN 198 (673)
Q Consensus 119 ~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N 198 (673)
+.++|+++++|||||||+|+|+|||+|.|..+. +++|||++|||||+||++|||+++|++++ +||++|+|+|
T Consensus 64 ~~~~~~~~~stGsLG~Gls~a~G~Ala~k~~~~-------~~~v~~l~GDGEl~EG~~wEA~~~A~~~~-~nli~iid~N 135 (195)
T cd02007 64 RSESEYDAFGTGHSSTSISAALGMAVARDLKGK-------KRKVIAVIGDGALTGGMAFEALNNAGYLK-SNMIVILNDN 135 (195)
T ss_pred CCCCCCCEECCCCHHHHHHHHHHHHHHHHHCCC-------CCEEEEEECCCHHHHHHHHHHHHHHHHCC-CCEEEEEECC
T ss_conf 999998845886468899999999999956799-------98499997781140189999999976518-9869999679
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCC
Q ss_conf 6322322355678217998864144444-444440678888888751102210222013345557
Q gi|254780655|r 199 GISIDGPISLADSTDQYARFRASGWNTL-SVNGHDHHAITSTLRKAQLSDKPTMIACETVIGFGS 262 (673)
Q Consensus 199 ~~si~~~~~~~~~~~~~~~~~a~Gw~~~-~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T~kG~G~ 262 (673)
++|++++++. ...+|++|||+++ +|||||+++|.+|+++++..+||++|+|+|+||||+
T Consensus 136 ~~~i~~~~~~-----~~~~f~afGw~~v~~vDGhd~~~i~~al~~a~~~~~P~~Iia~TikGkG~ 195 (195)
T cd02007 136 EMSISPNVGT-----PGNLFEELGFRYIGPVDGHNIEALIKVLKEVKDLKGPVLLHVVTKKGKGY 195 (195)
T ss_pred CEEECCCCCC-----CCCHHHHCCCCEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCC
T ss_conf 8761488666-----42368774886778607899999999999986289998999996415084
No 24
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=100.00 E-value=2.5e-43 Score=332.73 Aligned_cols=297 Identities=16% Similarity=0.162 Sum_probs=223.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-HHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEC
Q ss_conf 31013467888998865543322034555674000266634454320-01003257620023567879987288762200
Q gi|254780655|r 364 IATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDF-SGRYLHYGVREHAMAAAMNGIALHKGLAPYSG 442 (673)
Q Consensus 364 vatr~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~-p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~ 442 (673)
+..|.+....|..+.+++|+++.+.+|+....+.. +....+ .++| |+||||+||+||+|+++|+|||+ .|++||++
T Consensus 4 ~~~~~ai~~al~~~~~~d~~v~~~geDv~~~~G~f-~~t~gl-~~~fgp~R~~d~gIaEq~~vg~A~GlA~-~G~~Piv~ 80 (327)
T PRK09212 4 LTVREALRDAMREEMERDPKVFLMGEEVGEYQGAY-KVTQGL-LEQFGPKRVIDTPITEHGFAGLAVGAAF-AGLRPIVE 80 (327)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCH-HHHHHH-HHHHCCCCEECCCCCHHHHHHHHHHHHH-CCCCCEEE
T ss_conf 22999999999999955989999827766467803-541689-9985875031677448999999998986-79944899
Q ss_pred CCH-HHHHHHHHHHHH-HHHH------HCCCEEECCCCCCCCCCCCCHH-HHCCCCCHHHHHCCCCEEEECCHHHHHHHH
Q ss_conf 100-355530012454-1111------0000130245433333333101-000222101110122112112012457777
Q gi|254780655|r 443 TFM-VFSDYSRPAIRL-ASLM------GIRVIHVLTHDSIGLGEDGPTH-QPVEHLAALRAIPDLLVLRPADSIETLECW 513 (673)
Q Consensus 443 tf~-~F~~~~~~~ir~-~al~------~~~v~~v~th~gi~~G~DGpTH-q~iedia~lr~iPnl~v~~P~d~~E~~~~~ 513 (673)
+++ .|+.|++|||+. +|.. ++++-+++...+-..+.+|+|| |.++ ++||++|||+|+.|+|+.|+..++
T Consensus 81 ~~~~~f~~ra~dQI~n~~ak~~~~~gg~~~vpvv~r~~~g~~~~~g~~Hs~~~~--a~~~~iPgl~Vv~Ps~~~d~~~ll 158 (327)
T PRK09212 81 FMTFNFAMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQCYA--SWYAHIPGLKVVAPYFAADCKGLL 158 (327)
T ss_pred EEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHH--HHHCCCCCCEEEECCCHHHHHHHH
T ss_conf 755667778999999988875241278523018998177246787743331568--896289998899648877889999
Q ss_pred HHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 65202567834999524444334566553221234737998569972999952688999999999999739943998574
Q gi|254780655|r 514 QVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVP 593 (673)
Q Consensus 514 ~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~ 593 (673)
++++++ ++|++++-+|-.........+..+.+.+|++.+++ +|.|++||++|.||++|++||+.|+++||+++|||++
T Consensus 159 ~~a~~~-~~Pvi~~e~~~ly~~~~~v~~~~~~~~iGKa~vlr-eG~DvTIva~G~mv~~al~AAe~L~~~GI~~eVIdl~ 236 (327)
T PRK09212 159 KTAIRD-NNPVIFLENEILYGHSHEVPDEEESIPFGKAAILR-EGSDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLR 236 (327)
T ss_pred HHHHHC-CCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEE-ECCCEEEEEECHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 998765-99849982443468765677653023377689998-5797499986457899999999999759986788521
Q ss_pred CCCHHCCCCHHHHHHHCCCCCEEEEECCC-CHHHH----HHHHCCC--------CCEEEE-CCCCCCCCHHHHHHHCCCC
Q ss_conf 65810008688999643679779997286-02789----9984579--------818983-5776768888999980999
Q gi|254780655|r 594 CFELFFEQSDSYRAQIIGSSPIKIAIEAG-LRQGW----DAFIGSD--------GSFIGM-QGFGASGSCDLLYQHFGIN 659 (673)
Q Consensus 594 s~k~ld~~~~~~~~~il~~~~~~vtiE~g-~~~g~----~~~~~~~--------~~~igi-d~Fg~sg~~~el~~~~Gld 659 (673)
|+||||++ . +.+...++..+||+|++ ...|| .+.+.++ ...++. |.+..++ ..|-+++=.+
T Consensus 237 tlkPlD~e--~-I~~sv~kT~~lv~veE~~~~gG~Gsevaa~l~e~~f~~L~~p~~rv~~~d~p~P~a--~~LE~~~~p~ 311 (327)
T PRK09212 237 TLRPLDTE--T-IIESVKKTNRLVVVEEGWPFAGVGAEIAALIMKEAFDYLDAPVERVTGKDVPLPYA--ANLEKLALPS 311 (327)
T ss_pred CCCCCCHH--H-HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCC--HHHHHHHCCC
T ss_conf 27899999--9-99999861978999679878878999999999975864589867968898089899--7689884989
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 8999999999848
Q gi|254780655|r 660 AIAIVDMVERKLS 672 (673)
Q Consensus 660 ~~~I~~~i~~~L~ 672 (673)
++.|+++|+++|.
T Consensus 312 ~~~I~~av~~~l~ 324 (327)
T PRK09212 312 EEDIIEAVKKVCY 324 (327)
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999866
No 25
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=100.00 E-value=3e-42 Score=324.87 Aligned_cols=295 Identities=14% Similarity=0.127 Sum_probs=224.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH-HCCCCCCCHHHHHHHHHHHHHCCCCCCEE-CCC
Q ss_conf 1346788899886554332203455567400026663445432001-00325762002356787998728876220-010
Q gi|254780655|r 367 RKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSG-RYLHYGVREHAMAAAMNGIALHKGLAPYS-GTF 444 (673)
Q Consensus 367 r~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~p~-r~i~~GIaE~~~~~~aaGla~~~g~~p~~-~tf 444 (673)
+.+...+|....+.+|+++....|+..--+. .+....+.++||+ |+||+||+||+|+++|+|||+ .|++||+ ..|
T Consensus 7 ~~ai~~al~~~m~~d~~v~~~GeDv~~~gg~--f~~t~gl~~kfg~~Rv~dtpIaE~~~vG~A~GlA~-~G~rPiv~~~~ 83 (326)
T CHL00144 7 FEALREAIDEEMARDPRVAVIGEDVGHYGGS--YKVTKDLHPKYGDLRVLDTPIAENSFTGMAIGAAM-TGLRPVVEGMN 83 (326)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCCCCCC--HHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHH-CCCEEEEEEEH
T ss_conf 9999999999997599889983776756780--67506799873855100677357889999998874-79979999746
Q ss_pred HHHHHHHHHHHH-HHHH------HHCCCEEECCCCCCCCCCCCCHHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHH
Q ss_conf 035553001245-4111------100001302454333333331010002221011101221121120124577776520
Q gi|254780655|r 445 MVFSDYSRPAIR-LASL------MGIRVIHVLTHDSIGLGEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVAL 517 (673)
Q Consensus 445 ~~F~~~~~~~ir-~~al------~~~~v~~v~th~gi~~G~DGpTHq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al 517 (673)
..|+.|++|||+ .+|. .++|+.+++.+.|. .|.+|+|||+.+|+++||++|||+|+.|+|+.|++.++++|+
T Consensus 84 ~~F~~~a~dQi~n~aa~~~~~~gg~~~vplvir~~~g-~g~~~g~~Hs~~~~a~~~~iPgl~Vv~Ps~~~da~~ll~~ai 162 (326)
T CHL00144 84 MGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRGPGG-VGRQLGAEHSQRLESYFQAVPGLQIVACSTPYNAKGLLKSAI 162 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCC-CCCCCCCCCCCCHHHHHHCCCCCEEEECCCHHHHHHHHHHHH
T ss_conf 7788999999999988986034786135799984777-678875412445688983389958995698788899999999
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCH
Q ss_conf 25678349995244443345665532212347379985699729999526889999999999997399439985746581
Q gi|254780655|r 518 KEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFEL 597 (673)
Q Consensus 518 ~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ 597 (673)
++ ++|+++.-.+.-...........+.+..|++.+++ +|+||+||++|.|+++|++||+.|+++||+++|||++|++|
T Consensus 163 ~~-~~Pv~~~e~~~ly~~~~~vp~~~~~~~~Gka~v~r-~G~DvTIVa~G~mv~~al~Aae~L~~~gI~~eVIDlrtl~P 240 (326)
T CHL00144 163 RS-DNPVLFFEHVLLYNLKEEIPDGEYLLPLEKAELVR-DGEDITILTYSRMRHHVIQAVKLLVTKGYDPEVIDLISLKP 240 (326)
T ss_pred HC-CCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEE-ECCCEEEEECHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 72-89818995345578764477655665467689997-27987999306779999999999997799768986045799
Q ss_pred HCCCCHHHHHHHCCCCCEEEEECCC-CHHHHH----HHHCC--------CCCEEEE-CCCCCCCCHHHHHHHCCCCHHHH
Q ss_conf 0008688999643679779997286-027899----98457--------9818983-57767688889999809998999
Q gi|254780655|r 598 FFEQSDSYRAQIIGSSPIKIAIEAG-LRQGWD----AFIGS--------DGSFIGM-QGFGASGSCDLLYQHFGINAIAI 663 (673)
Q Consensus 598 ld~~~~~~~~~il~~~~~~vtiE~g-~~~g~~----~~~~~--------~~~~igi-d~Fg~sg~~~el~~~~Gld~~~I 663 (673)
||.+ . +.+.+.++..+|++|++ ...||+ +.+.+ ....++. |.+..+ ...|.+.+--+++.|
T Consensus 241 lD~e--~-I~~sv~kT~rlv~veE~~~~gG~Gsei~a~i~e~~f~~l~~p~~Ri~~~d~p~P~--s~~lE~~~~p~~~~I 315 (326)
T CHL00144 241 LDMT--T-ISTSIKKTHKVLIVEECMKTGGIGAELLALINENLFDELDAPIFRLSSQDVPTPY--NGSLEEATVIQPEQI 315 (326)
T ss_pred CCHH--H-HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCC--CHHHHHHHCCCHHHH
T ss_conf 9999--9-9999985498999976998897899999999997586559997896889808989--977998759999999
Q ss_pred HHHHHHHHC
Q ss_conf 999999848
Q gi|254780655|r 664 VDMVERKLS 672 (673)
Q Consensus 664 ~~~i~~~L~ 672 (673)
+++|+++|+
T Consensus 316 ~~av~~l~~ 324 (326)
T CHL00144 316 IEAVEQITN 324 (326)
T ss_pred HHHHHHHHC
T ss_conf 999999862
No 26
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-36 Score=282.52 Aligned_cols=292 Identities=12% Similarity=0.120 Sum_probs=211.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCCCCC-HHHCCCCCCCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 31013467888998865543322034555-674000266634454320-0100325762002356787998728876220
Q gi|254780655|r 364 IATRKSSELVLEVVNDCLPELIGGSADLT-GSNGTKTSQMKAISKSDF-SGRYLHYGVREHAMAAAMNGIALHKGLAPYS 441 (673)
Q Consensus 364 vatr~a~g~~l~~i~~~~p~iv~~sADl~-~St~~~~~~~~~~~~~~~-p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~ 441 (673)
+..+.+....|....+.+|+++...-|+. |+. .+......++| |+|++|++|+|++++++|.|+|+ .|++|++
T Consensus 35 ~t~~~Ai~~al~~~m~~d~~v~~~GeDv~~GG~----f~~T~gL~~~fGp~Rv~DtPIsE~~ivG~AvG~A~-~G~rPVv 109 (355)
T PTZ00182 35 MNLFQAINSALDIALSKDPKTVLFGEDVAFGGV----FRCSLGLLKKYGEQRVFNTPLCEQGIVGFAIGLAA-VGWTAIA 109 (355)
T ss_pred EEHHHHHHHHHHHHHHHCCCEEEEECCCCCCCH----HHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHH-CCCCEEE
T ss_conf 579999999999999659988998477366766----66402599985885003178558889999999997-6993599
Q ss_pred CC-CHHHHHHHHHHHH-HHHHHH--------C-CCEEECCCCCCCCCCCCCHH-HHCCCCCHHHHHCCCCEEEECCHHHH
Q ss_conf 01-0035553001245-411110--------0-00130245433333333101-00022210111012211211201245
Q gi|254780655|r 442 GT-FMVFSDYSRPAIR-LASLMG--------I-RVIHVLTHDSIGLGEDGPTH-QPVEHLAALRAIPDLLVLRPADSIET 509 (673)
Q Consensus 442 ~t-f~~F~~~~~~~ir-~~al~~--------~-~v~~v~th~gi~~G~DGpTH-q~iedia~lr~iPnl~v~~P~d~~E~ 509 (673)
.+ |+.|+.+++|||. .+|.++ . |+++ -+..|- .+..|++| |++| ++|+++|||+|+.|+++.++
T Consensus 110 ei~f~dFl~~A~DQIvn~aAk~~~~sgg~~~~~plvi-R~p~G~-~~~~g~~HSqs~e--a~f~~iPGLkVv~Ps~p~DA 185 (355)
T PTZ00182 110 EIQFADYIFPAFDQIVNEAAKYRYRSGGQFDCGKLTI-RSTWGA-VGHGGLYHSQSPE--AYFAHCAGLKIVVPSDPYQA 185 (355)
T ss_pred EEEHHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEE-ECCCCC-CCCCCCCCCCCHH--HHHHCCCCCEEEECCCHHHH
T ss_conf 9756878999999999998777500387030242899-537888-7778861017969--99826899789934999999
Q ss_pred HHHHHHHHCCCCCCEEEEECCCCCCC-CCCCCCCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHC-CCCE
Q ss_conf 77776520256783499952444433-456655322123473799856997299995268899999999999973-9943
Q gi|254780655|r 510 LECWQVALKEKNRPSVLSLSRQNLPF-LRTQYESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSR-NIST 587 (673)
Q Consensus 510 ~~~~~~al~~~~gP~~ir~~R~~~p~-~~~~~~~~~~~~~G~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~-Gi~~ 587 (673)
+.++++|+++ ++|++++.+|.-... ........+.+.+|+..+++ +|.|++||++|.||++|++||+.|+++ ||++
T Consensus 186 kgLl~sAi~d-~~PVif~E~k~Ly~~~~~~vp~~~~~iplGka~i~r-~G~DvTIVa~G~mv~~al~AA~~L~~e~GIs~ 263 (355)
T PTZ00182 186 KGLLLACIRD-PNPVIFFEPKILYRSAVEEVPPDDYTLELGKAEVVK-EGKDVTMVGYGSQVGVMKKAAELAEKEHGISV 263 (355)
T ss_pred HHHHHHHHCC-CCCEEEEECHHHCCCCCCCCCCCCCCCCCCEEEEEE-ECCCEEEEEECHHHHHHHHHHHHHHHCCCCCE
T ss_conf 9999876107-985899965454056766788544544466679996-17947999965689999999999975029977
Q ss_pred EEEECCCCCHHCCCCHHHHHHHCCCCCEEEEECC-CCHHHHHH----H--------HCCCCCEEEECCCCCCCCHHHHHH
Q ss_conf 9985746581000868899964367977999728-60278999----8--------457981898357767688889999
Q gi|254780655|r 588 RVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIEA-GLRQGWDA----F--------IGSDGSFIGMQGFGASGSCDLLYQ 654 (673)
Q Consensus 588 ~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE~-g~~~g~~~----~--------~~~~~~~igid~Fg~sg~~~el~~ 654 (673)
+|||++|++|||. +..+.++ .++..++++|+ ....||++ . +......++-.+.+. |.. |-+
T Consensus 264 EVIDlRtL~PlD~--e~I~~SV-~KTgrllvVeE~~~~~G~gsEI~a~i~E~~f~~L~ap~~Rv~~~d~P~--P~~-lE~ 337 (355)
T PTZ00182 264 EVIDLQTILPWDR--ETVADSV-KKTGRVIVTHEAPKTSGMGAEIAATIQERCFLSLEAPIKRVCGYDTPF--PLV-HEP 337 (355)
T ss_pred EEEECCCCCCCCH--HHHHHHH-HHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCC--CHH-HHH
T ss_conf 9995474689999--9999999-987989999889988868999999999986875079868978898889--866-786
Q ss_pred HCCCCHHHHHHHHHHHHC
Q ss_conf 809998999999999848
Q gi|254780655|r 655 HFGINAIAIVDMVERKLS 672 (673)
Q Consensus 655 ~~Gld~~~I~~~i~~~L~ 672 (673)
.+=-+++.|+++|+++|+
T Consensus 338 ~~~P~~~~I~~av~~ll~ 355 (355)
T PTZ00182 338 LYLPDELKLLEAIKQVVN 355 (355)
T ss_pred HHCCCHHHHHHHHHHHHC
T ss_conf 719998999999999749
No 27
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=100.00 E-value=4.2e-36 Score=280.41 Aligned_cols=155 Identities=39% Similarity=0.573 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCHHH
Q ss_conf 34678889988655433220345556740002666344543200100325762002356787998728876220010035
Q gi|254780655|r 368 KSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVF 447 (673)
Q Consensus 368 ~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~tf~~F 447 (673)
++++++|..+++.+++++++++|+..++++. .++++||+||||+||+||+|+++|+|||+ .|++||+.+|..|
T Consensus 1 ~a~~~~l~~~~~~d~~vv~l~~Dl~~~~~~~------~f~~~~p~r~in~GIaE~~~vg~a~GlA~-~G~~pi~~~~~~F 73 (156)
T cd07033 1 KAFGEALLELAKKDPRIVALSADLGGSTGLD------KFAKKFPDRFIDVGIAEQNMVGIAAGLAL-HGLKPFVSTFSFF 73 (156)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCCCCCHH------HHHHHCCCCEECCCCHHHHHHHHHHHHHH-CCCCCCHHHHHHH
T ss_conf 9799999999977979999968767887758------99987897844477019999999999997-5999811357988
Q ss_pred HHHHHHHHH-HHHHHHCCCEEECCCCCCCCCCCCCHHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 553001245-4111100001302454333333331010002221011101221121120124577776520256783499
Q gi|254780655|r 448 SDYSRPAIR-LASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVL 526 (673)
Q Consensus 448 ~~~~~~~ir-~~al~~~~v~~v~th~gi~~G~DGpTHq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~i 526 (673)
++|+++||| ++|++++||+++++|+|++.|+||||||++||+++||++||++|+.|+|+.|++.+++++++.. +|+||
T Consensus 74 ~~r~~eqi~~~~a~~~~~v~~v~~~~g~~~~~~G~tH~~~ed~~~~~~~Pgl~i~~P~~~~e~~~ll~~a~~~~-~P~~i 152 (156)
T cd07033 74 LQRAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALEYD-GPVYI 152 (156)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCC-CCEEE
T ss_conf 75109999999775279965997688547778978805500587872389948996199999999999998289-98899
Q ss_pred EECC
Q ss_conf 9524
Q gi|254780655|r 527 SLSR 530 (673)
Q Consensus 527 r~~R 530 (673)
|++|
T Consensus 153 rl~r 156 (156)
T cd07033 153 RLPR 156 (156)
T ss_pred EEEC
T ss_conf 9769
No 28
>PRK05261 putative phosphoketolase; Provisional
Probab=100.00 E-value=1.2e-29 Score=233.62 Aligned_cols=611 Identities=20% Similarity=0.251 Sum_probs=371.5
Q ss_pred CHHHHHHHHHHH---HHHHHHHHHH-C----------------CCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCE-
Q ss_conf 889999999999---9999999973-8----------------897643136899999984332544577898878877-
Q gi|254780655|r 16 DDDYKKMADAIR---FLSMDAIENV-N----------------SGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDR- 74 (673)
Q Consensus 16 ~~~l~~~a~~iR---~~~~~~v~~a-~----------------~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr- 74 (673)
.++|+++-+.-| .+++.+|.-. | =||-|.+=|.-=++..|=+..-++|. |-
T Consensus 7 ~~~l~~~d~~wRAanYLsvgqiYL~dNpLL~~pL~~~~iK~rllGHWGT~pGlnfiYaHlNr~I~~~~~--------~~~ 78 (786)
T PRK05261 7 KEELELLDAYWRAANYLSVGQIYLKDNPLLREPLKPEHVKPRLLGHWGTTPGLNFIYAHLNRLIRKYDL--------DMI 78 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--------CEE
T ss_conf 999999999999987898888987048100688986657754477477882499999998898740587--------459
Q ss_pred EEEECCCCHHHHHHHHHHCC-----CCCCC--HHHHHHH-HCCC--CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99856520189999999707-----68899--8898640-0038--8798898888998730688863147999999999
Q gi|254780655|r 75 FVLSAGHGSMLYYALLYLLG-----YQDVT--IEDIKNF-RTIG--SKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAI 144 (673)
Q Consensus 75 ~v~s~GH~s~~~Y~~~~l~G-----~~~~~--~e~l~~~-r~~~--s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~ 144 (673)
||.-.||+.|++-+..+|.| |.+++ .+.|++| |+|. +..|+|.. .++||--..-|-||-++|.|.|+++
T Consensus 79 ~i~GPGHGgpa~~an~yLeGtyse~yp~i~~d~~Gl~~l~~qFS~pgGi~SH~~-petPGsIhEGGELGYsLsha~GA~l 157 (786)
T PRK05261 79 YIAGPGHGGPAMVANAYLEGTYSEIYPEISQDEEGMKRLFKQFSFPGGIPSHAA-PETPGSIHEGGELGYSLSHAYGAAF 157 (786)
T ss_pred EEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 995488668888777665276602367889788999999984899898756678-8999730346421256776615755
Q ss_pred HHHHHHHHCCCCCCCCEEEEEECCCCCCCH---HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC--CCCCHHHHHH
Q ss_conf 999853426887678459998436211434---45578876522022330699962763223223556--7821799886
Q gi|254780655|r 145 AERKLREEFGDVLIDHYTYVLVGDGCLMEG---ISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLA--DSTDQYARFR 219 (673)
Q Consensus 145 a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG---~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~--~~~~~~~~~~ 219 (673)
. +- |--|.||+||||...| .+|-+-.+.--..-.-++=|+.-|++.|+.+|-.. ..+++.+.|+
T Consensus 158 D--------nP---dliva~vvGDGEaETGplAtsW~s~kflnP~~dGaVLPILhLNG~KI~npTilar~~~~eL~~lf~ 226 (786)
T PRK05261 158 D--------NP---DLIVACVVGDGEAETGPLAASWHSNKFLNPATDGAVLPILHLNGYKIANPTILARISDEELESLFR 226 (786)
T ss_pred C--------CC---CEEEEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEECCCCHHHHHHHHH
T ss_conf 8--------99---859999835861015854000045433581347631015741573136871221378799999986
Q ss_pred HCCCCCCCCCCCCHHHHHH--------HHHH-------HHHC---CCCH--HHHHCCCCCCCCC------CCCCCCCCCC
Q ss_conf 4144444444440678888--------8887-------5110---2210--2220133455570------0047711033
Q gi|254780655|r 220 ASGWNTLSVNGHDHHAITS--------TLRK-------AQLS---DKPT--MIACETVIGFGSP------NRAGTNKVHG 273 (673)
Q Consensus 220 a~Gw~~~~vdG~d~~~i~~--------a~~~-------ak~~---~kP~--~I~~~T~kG~G~~------~~e~~~~~HG 273 (673)
++||+.+.|+|.|..++.. |+++ |+.. .+|. +|+++|.|||+.| ..||+..+|+
T Consensus 227 G~Gy~P~~Veg~dp~~~h~~mA~ald~a~~~I~~iq~~Ar~~~~~~rP~wPmIIlRtPKGWtgPk~vdG~~iEGt~RaHQ 306 (786)
T PRK05261 227 GYGYEPIFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDAERPRWPMIVLRTPKGWTGPKEVDGKKIEGTWRAHQ 306 (786)
T ss_pred HCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCEECCCCCCCCC
T ss_conf 27988569658887999999999999999999999999974798768887779997888888863438855256630015
Q ss_pred CCCCH-----HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-----HHH-HC
Q ss_conf 43722-----33212566348777854389789999997543335668876424676311111002300-----111-07
Q gi|254780655|r 274 SALGQ-----EEIKATRKALNWDLDPFFIPDDIMKKWRLAGLRSSQTRADWQERLSSMKSSIRKEFERR-----FSD-AL 342 (673)
Q Consensus 274 ~~l~~-----ee~~~~~k~lg~~~~~f~ip~~v~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~e~~~~-----~~~-~~ 342 (673)
-||.. +.+..+.+.|. .+.|++..+ ..+. ...+ +.... |+.-.|. .++ .+
T Consensus 307 VPl~~~~~d~~hl~~Le~Wl~-----SY~PeELFd---~~G~----l~~e----i~al~---P~g~~Rm~~nP~angg~~ 367 (786)
T PRK05261 307 VPLANVRDNPEHLDLLEDWLR-----SYRPEELFD---EDGR----LKPE----LAALA---PKGDRRMGANPHANGGLL 367 (786)
T ss_pred CCCCCCCCCHHHHHHHHHHHH-----HCCCHHHCC---CCCC----CCHH----HHHHC---CCCCCCCCCCCCCCCCCC
T ss_conf 888988889999999999998-----559288739---8777----4677----89558---997554456864447866
Q ss_pred CCCCH-HHHHHHCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCC--CC-----CCCCCC----C
Q ss_conf 76302-3555420000013-55431013467888998865543-3220345556740002--66-----634454----3
Q gi|254780655|r 343 PDCFD-NAFINLKKKFEHS-KPMIATRKSSELVLEVVNDCLPE-LIGGSADLTGSNGTKT--SQ-----MKAISK----S 408 (673)
Q Consensus 343 p~~~~-~~~~~~~~~~~~~-~~~vatr~a~g~~l~~i~~~~p~-iv~~sADl~~St~~~~--~~-----~~~~~~----~ 408 (673)
..... ..+.++.-..... ..........|+++..+.+.||. +-++++|-..||.... .. ...... -
T Consensus 368 ~~~L~lPd~~~~av~~~~pg~~~~~~~~~lg~~lrdvi~~Np~~fRvf~PDEt~SNRL~av~e~t~r~w~~~~~~~d~~l 447 (786)
T PRK05261 368 LRDLKLPDFRDYAVDVPKPGGVEAEATRVLGKYLRDVIKLNPDNFRIFGPDETASNRLQAVFEVTDRQWMAEILPPDEHL 447 (786)
T ss_pred CCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 77889998676365457888655568899999999999968876610388654334417899874774036667853224
Q ss_pred CCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCHHHH---HHHHHH----HHHH-------HHHHCCCEEECCCCCC
Q ss_conf 2001003257620023567879987288762200100355---530012----4541-------1110000130245433
Q gi|254780655|r 409 DFSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVFS---DYSRPA----IRLA-------SLMGIRVIHVLTHDSI 474 (673)
Q Consensus 409 ~~p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~tf~~F~---~~~~~~----ir~~-------al~~~~v~~v~th~gi 474 (673)
...||.++ =..|+.+-+++-|..+.| -..+.++|-.|. +-|..| ++.+ .+.-+| ++.|--.-
T Consensus 448 a~~GRVie-~LSEH~cqGwleGYlLTG-RhGlf~sYEAF~~ivdSM~~Qh~KwLk~~~e~~WR~pi~SlN--~llTS~~W 523 (786)
T PRK05261 448 SPDGRVME-VLSEHLCEGWLEGYLLTG-RHGFFSSYEAFIHIVDSMFNQHAKWLKVAREIPWRKPIPSLN--YLLTSHVW 523 (786)
T ss_pred CCCCCHHH-HHHHHHHHHHHHHHHCCC-CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--EEEEECEE
T ss_conf 77874656-556888878876532158-776421189899999999999999999865277889876612--68620113
Q ss_pred CCCCCCCHHHH--CCCCCHHHHHCC-CCEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 33333310100--022210111012-211211201245777765202567834999524444334566553221234737
Q gi|254780655|r 475 GLGEDGPTHQP--VEHLAALRAIPD-LLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAY 551 (673)
Q Consensus 475 ~~G~DGpTHq~--iedia~lr~iPn-l~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~ 551 (673)
.-..+|-|||- +-| .++--.|. .+|+-|.|++-+...++.++.+++.-.+|.-++|+.|+.-...+....+..|..
T Consensus 524 rQdHNGfSHQDPgfid-~vl~k~~~~~RvYlPpDaNtlLav~d~clrsr~~iNviVa~Kqp~pq~ls~eeA~~h~~~G~~ 602 (786)
T PRK05261 524 RQDHNGFSHQDPGFID-HVANKKPDVIRVYLPPDANTLLAVADHCLRSRNYINVIVAGKQPRPQWLSMDEARKHCTKGLG 602 (786)
T ss_pred ECCCCCCCCCCCHHHH-HHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 3367876667965999-987448884799889966469999999997249168999778777742699999999971673
Q ss_pred EE--EE---CCCCCEEEEECCHHH-HHHHHHHHHHHHC--CCCEEEEECCCCCHHCCC-------CHHHHHHHCCCCCEE
Q ss_conf 99--85---699729999526889-9999999999973--994399857465810008-------688999643679779
Q gi|254780655|r 552 DY--IS---TPNAQVTIFSSGSEL-KIAVEACEILSSR--NISTRVVSVPCFELFFEQ-------SDSYRAQIIGSSPIK 616 (673)
Q Consensus 552 ~~--~~---~~~~dv~iia~G~~v-~~al~aa~~L~~~--Gi~~~Vi~~~s~k~ld~~-------~~~~~~~il~~~~~~ 616 (673)
++ .. .+.+||++.++|... .+++.|+++|+++ .+++||||+--+-.|... +++...+++...+++
T Consensus 603 iW~wAS~~~~~ePDVVla~~Gd~pt~E~lAA~~lLr~~~P~lkiR~VNVvDL~~L~~~~~hphgLsd~~Fd~lFt~DkpV 682 (786)
T PRK05261 603 IWDWASNDDGEEPDVVLACAGDVPTLETLAAVDLLREHFPDLKIRVVNVVDLMKLQPPSEHPHGLSDREFDALFTTDKPV 682 (786)
T ss_pred EEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECHHCCCCCCCCCCCCHHHHHHHCCCCCCE
T ss_conf 86433468899999899816746679999999999986888479999987503117988797779989999756899887
Q ss_pred EEECCCCHHHHHHHHCCC--CCEEEECCCCCCCC---HHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 997286027899984579--81898357767688---8899998099989999999998
Q gi|254780655|r 617 IAIEAGLRQGWDAFIGSD--GSFIGMQGFGASGS---CDLLYQHFGINAIAIVDMVERK 670 (673)
Q Consensus 617 vtiE~g~~~g~~~~~~~~--~~~igid~Fg~sg~---~~el~~~~Gld~~~I~~~i~~~ 670 (673)
|..-.|....+.+++-.. ...+-|.+|-+.|+ +-++.-.-++|-=+++..+.+.
T Consensus 683 iFafHGYp~lI~~L~~~R~n~~~~~V~GY~E~G~tTTPfdM~v~N~~dRfhla~dai~~ 741 (786)
T PRK05261 683 IFAFHGYPWLIHRLTYRRTNHRNFHVRGYKEEGTTTTPFDMVVLNELDRFHLAIDAIDR 741 (786)
T ss_pred EEEECCCHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99806978999998647888884489742048877984244665078789999999986
No 29
>pfam02779 Transket_pyr Transketolase, pyrimidine binding domain. This family includes transketolase enzymes, pyruvate dehydrogenases, and branched chain alpha-keto acid decarboxylases.
Probab=100.00 E-value=2e-33 Score=260.99 Aligned_cols=169 Identities=41% Similarity=0.578 Sum_probs=151.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEC
Q ss_conf 43101346788899886554332203455567400026663445432001003257620023567879987288762200
Q gi|254780655|r 363 MIATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAMAAAMNGIALHKGLAPYSG 442 (673)
Q Consensus 363 ~vatr~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~ 442 (673)
.+++|++++.+|..+++.+|+++++++|+.+|+.....+.. .+..++|+||+||+||+|+++|+|+|++|+..||..
T Consensus 2 ~~~~r~a~~~al~~~~~~d~~vv~~~~D~~~g~~~~~~~~~---~~~~~~R~~~~gIaE~~~vg~a~G~A~~G~~~iv~~ 78 (174)
T pfam02779 2 KIATRKASGEALAELAERDPRVVGGGADVGGGTFTVTKGLL---HPQGEGRVIDTGIAEQAMVGIANGMALHGLLPPVEA 78 (174)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHCCC---CCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 76499999999999997798999994877887551332465---877898567658177999999999997099641112
Q ss_pred CCHHHHH-HHHHHHH-HHHHHHCCCEEECCCCCCCCCCCCCHHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCC
Q ss_conf 1003555-3001245-4111100001302454333333331010002221011101221121120124577776520256
Q gi|254780655|r 443 TFMVFSD-YSRPAIR-LASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEK 520 (673)
Q Consensus 443 tf~~F~~-~~~~~ir-~~al~~~~v~~v~th~gi~~G~DGpTHq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~ 520 (673)
+|+.|++ |+++||+ +.++++.|+.++.+|+|++.|.||+|||+++|+++||++||++|+.|+|+.|++.++++|++.+
T Consensus 79 ~f~~F~~~r~~~~i~~~~~~~~~~v~~v~~~~g~~~g~~G~tHhs~~~~a~~~~iPgl~V~~Ps~~~da~~ll~~ai~~~ 158 (174)
T pfam02779 79 TFGDFANIRADAAIRHYAALGKLPVPFVVTRDPIGVGEDGPTHQSQEDEAYLRAIPGLKVVRPSDPAEAKGLLRAAIRRD 158 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCC
T ss_conf 17888888659999999985899998786664602567715465642899997589988996199999999999999648
Q ss_pred -CCCEEEEECCCCCC
Q ss_conf -78349995244443
Q gi|254780655|r 521 -NRPSVLSLSRQNLP 534 (673)
Q Consensus 521 -~gP~~ir~~R~~~p 534 (673)
++|++||++|+.++
T Consensus 159 ~~~Pv~i~~~r~~~~ 173 (174)
T pfam02779 159 DDDPVVFRLPRQLLR 173 (174)
T ss_pred CCCCEEEEECHHHCC
T ss_conf 998389983077678
No 30
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-29 Score=233.38 Aligned_cols=587 Identities=20% Similarity=0.226 Sum_probs=355.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEE-ECCCCHHHHHHHHHHCCC-----CCCCHH--H----HHHH
Q ss_conf 897643136899999984332544577898878877998-565201899999997076-----889988--9----8640
Q gi|254780655|r 39 SGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVL-SAGHGSMLYYALLYLLGY-----QDVTIE--D----IKNF 106 (673)
Q Consensus 39 ~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~-s~GH~s~~~Y~~~~l~G~-----~~~~~e--~----l~~~ 106 (673)
=||.|.+.|..-++.-+-+-.-++| .+.+.. -.||+.|++-+..+|.|. .+++.+ - +++|
T Consensus 60 lGHwGt~pg~s~~Y~H~nr~i~~~d--------~~~~yv~GpGHg~~~~~~~~yLeGtys~~yp~~s~d~~Gm~rL~~qF 131 (793)
T COG3957 60 LGHWGTQPGLSFIYAHLNRLISKYD--------ANMAYVMGPGHGGPAIVANTYLEGTYSEMYPDISQDEEGLNRLFKQF 131 (793)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHC--------CCEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 0322688873255433347887627--------32589963788865155323357754300302034277899999863
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCH---HHHHHHHHH
Q ss_conf 00388798898888998730688863147999999999999853426887678459998436211434---455788765
Q gi|254780655|r 107 RTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEG---ISQEAISFA 183 (673)
Q Consensus 107 r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG---~~~EAl~~A 183 (673)
+-.|| +++|-. .++||.-...|.||++++-|.|.|+-. - |--+.|++||||--+| ++|-+--+.
T Consensus 132 s~PgG-i~SH~~-petPGsIhEGGeLGy~l~ha~gAa~d~--------P---dli~~~vvGDGeaetgplatsWhs~kf~ 198 (793)
T COG3957 132 SFPGG-IGSHVA-PETPGSIHEGGELGYALSHAYGAAFDN--------P---DLIVACVVGDGEAETGPLATSWHSNKFL 198 (793)
T ss_pred CCCCC-CCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHCCC--------C---CCEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 48788-644458-889976476752248899987750179--------9---8579999426633357630001222345
Q ss_pred HHHCCCCEEEEEECCCCCCCCCCCCCCC--CCHHHHHHHCCCCCCCCCCCCHHHHHHH--------------HH-HHHHC
Q ss_conf 2202233069996276322322355678--2179988641444444444406788888--------------88-75110
Q gi|254780655|r 184 GHLGLSKLIVLWDNNGISIDGPISLADS--TDQYARFRASGWNTLSVNGHDHHAITST--------------LR-KAQLS 246 (673)
Q Consensus 184 ~~~~l~nli~i~d~N~~si~~~~~~~~~--~~~~~~~~a~Gw~~~~vdG~d~~~i~~a--------------~~-~ak~~ 246 (673)
.--.-.+++=|+..|+++|+-++-.... +.+.+.|+++||+.+-|+|+|.....+. ++ +++..
T Consensus 199 np~~dGavLPIL~lNGykI~npT~lar~s~~el~~~f~G~Gy~p~~veg~d~~d~hq~mAa~ldt~~~~i~~iq~~ar~~ 278 (793)
T COG3957 199 NPARDGAVLPILHLNGYKIENPTVLARISDEELKALFEGYGYEPVFVEGADPADMHQLMAAVLDTAFEEIQRIQRRAREN 278 (793)
T ss_pred CCCCCCCEEEEEEECCEECCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 74336732357874361015864555167699999985179840585589867763457899999999999999987741
Q ss_pred C---CCH--HHHHCCCCCCCCCC------CCCCCCCCCCCCCHH-----HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 2---210--22201334555700------047711033437223-----3212566348777854389789999997543
Q gi|254780655|r 247 D---KPT--MIACETVIGFGSPN------RAGTNKVHGSALGQE-----EIKATRKALNWDLDPFFIPDDIMKKWRLAGL 310 (673)
Q Consensus 247 ~---kP~--~I~~~T~kG~G~~~------~e~~~~~HG~~l~~e-----e~~~~~k~lg~~~~~f~ip~~v~~~~~~~~~ 310 (673)
. +|. +|+++|-||++.|. .||..++|..|++.. ......+.+.- +.|++. |..
T Consensus 279 ~~~~~p~wPmiilrtPkGwt~p~~idG~~~eg~~raHqvPl~~~~~~p~h~~~l~~wl~s-----y~p~el---fde--- 347 (793)
T COG3957 279 NEAIRPRWPMIILRTPKGWTGPVEIDGKKLEGSWRAHQVPLKGHNLNPAHLLELEEWLKS-----YKPEEL---FDE--- 347 (793)
T ss_pred CCCCCCCCCCEEEECCCCCCCCEEECCEECCCCCHHCCCCCCCCCCCCHHHHHHHHHHHH-----CCHHHH---HCC---
T ss_conf 543476665003545777767535314221565412037778787882016899999984-----496765---155---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHH------HHCCCCCHHHHHHHCCCCCC-----CCCCCCHHHHHHHHHHHHHH
Q ss_conf 33566887642467631111100230011------10776302355542000001-----35543101346788899886
Q gi|254780655|r 311 RSSQTRADWQERLSSMKSSIRKEFERRFS------DALPDCFDNAFINLKKKFEH-----SKPMIATRKSSELVLEVVND 379 (673)
Q Consensus 311 ~~~~~~~~w~~~~~~~~~~~~~e~~~~~~------~~~p~~~~~~~~~~~~~~~~-----~~~~vatr~a~g~~l~~i~~ 379 (673)
.+......| .-.++..+|... +.++.. ..+.++.....+ ..+.. ...+.|+++..+.+
T Consensus 348 ~gaL~~e~~--------~~ap~~~~Rm~~~p~angg~l~~e--L~lPD~r~~~v~~~~~g~~~~~-~t~~lg~~l~dv~k 416 (793)
T COG3957 348 HGALKPELR--------ELAPKGEERMGANPHANGGLLPRE--LPLPDLRDYAVEVSEPGAVTAE-STTALGRFLRDVMK 416 (793)
T ss_pred CCCCCHHHH--------HHCCCCCCCCCCCCCCCCCCCCCC--CCCCCHHHCCCCCCCCCCCCHH-HHHHHHHHHHHHHH
T ss_conf 578787899--------746554445578976667523355--7899745447544788765204-47889999999986
Q ss_pred HHHH-HHHCCCCCCCCCCCCC--CCCCC-----CCC----CCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCHHH
Q ss_conf 5543-3220345556740002--66634-----454----3200100325762002356787998728876220010035
Q gi|254780655|r 380 CLPE-LIGGSADLTGSNGTKT--SQMKA-----ISK----SDFSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVF 447 (673)
Q Consensus 380 ~~p~-iv~~sADl~~St~~~~--~~~~~-----~~~----~~~p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~tf~~F 447 (673)
.++. +.+.++|-..||+... ..... ... ....||.++ -..|+...+.+.|.++.|+ ..+.++|-.|
T Consensus 417 ~N~~~fRvf~PDE~aSNrl~~v~~~tkr~~~~~~~~ed~~lsp~GRV~e-~LSEh~c~Gwlegy~LtGr-~glf~sYEaF 494 (793)
T COG3957 417 LNPDNFRVFGPDETASNRLGGVLKVTKRVWMAVTLPEDDFLSPDGRVME-VLSEHACQGWLEGYLLTGR-HGLFASYEAF 494 (793)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEH-HHCHHHHHHHHHHHHHCCC-CCCEEEHHHH
T ss_conf 0864257647871022101789987653012445684300288863412-2048888789999985177-6614108999
Q ss_pred H---HHHHHHH----HHHHHHH----C-CCEEECCCCCCCCCCCCCHHHH--CCCCCHHHHHC-CCCEEEECCHHHHHHH
Q ss_conf 5---5300124----5411110----0-0013024543333333310100--02221011101-2211211201245777
Q gi|254780655|r 448 S---DYSRPAI----RLASLMG----I-RVIHVLTHDSIGLGEDGPTHQP--VEHLAALRAIP-DLLVLRPADSIETLEC 512 (673)
Q Consensus 448 ~---~~~~~~i----r~~al~~----~-~v~~v~th~gi~~G~DGpTHq~--iedia~lr~iP-nl~v~~P~d~~E~~~~ 512 (673)
+ +-|+.|. +.....+ . -..+++|-.-..-+.+|-|||- +.| .++...| ++.|+-|+|++-+..+
T Consensus 495 ~~iv~sm~nQh~kwl~v~~e~~wr~~~~Sln~l~TS~vw~QdhNGfsHQdPgf~~-~~~~k~~d~vRvyfPpDaNtlLav 573 (793)
T COG3957 495 AHIVDSMFNQHAKWLKVTREVEWRRPIPSLNYLLTSHVWRQDHNGFSHQDPGFID-HVANKKSDIVRVYFPPDANTLLAV 573 (793)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHCCCCCCCCCCCHHHH-HHHHHCCCCEEEECCCCCCCHHHH
T ss_conf 9999998753099999998505678887410200015565466787657953999-997616575268658987610445
Q ss_pred HHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEC--C--CCCEEEEECCHHH-HHHHHHHHHHHHCC--C
Q ss_conf 76520256783499952444433456655322123473799856--9--9729999526889-99999999999739--9
Q gi|254780655|r 513 WQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYIST--P--NAQVTIFSSGSEL-KIAVEACEILSSRN--I 585 (673)
Q Consensus 513 ~~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~--~--~~dv~iia~G~~v-~~al~aa~~L~~~G--i 585 (673)
+.+|+.+.+.-.+|.-++++.|...+-......+..|...+.-. . .+||.+.+.|.+. -++++|+++|++++ +
T Consensus 574 ~d~~l~s~n~in~iVa~K~p~pq~~t~~qA~~~~~~G~~iwewas~d~gepdvV~A~~Gd~~t~e~laAa~~L~e~~p~l 653 (793)
T COG3957 574 YDHCLRSRNKINVIVASKQPRPQWLTMEQAEKHCTDGAGIWEWASGDDGEPDVVMACAGDVPTIEVLAAAQILREEGPEL 653 (793)
T ss_pred HHHHHHCCCCEEEEEECCCCCCEEECHHHHHHHHHCCCEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 66776256733799736997630001999998763481788752479999877999358731599999999999758643
Q ss_pred CEEEEECCCCCHHCCC-------CHHHHHHHCCCCCEEEEECCCCHHHHHHHHCC-----CCCEEE--------------
Q ss_conf 4399857465810008-------68899964367977999728602789998457-----981898--------------
Q gi|254780655|r 586 STRVVSVPCFELFFEQ-------SDSYRAQIIGSSPIKIAIEAGLRQGWDAFIGS-----DGSFIG-------------- 639 (673)
Q Consensus 586 ~~~Vi~~~s~k~ld~~-------~~~~~~~il~~~~~~vtiE~g~~~g~~~~~~~-----~~~~ig-------------- 639 (673)
.+||||+.-+-.|... +++..++.+..+++++..-.|...-..+++.. +..+-|
T Consensus 654 ~vRvVnVvdl~rLq~~~~hphg~~d~efd~lFt~d~pvif~fHGy~~li~~L~y~r~~~~~~~v~Gy~e~G~tttp~dm~ 733 (793)
T COG3957 654 RVRVVNVVDLMRLQPPHDHPHGLSDAEFDSLFTTDKPVIFLFHGYPWLIHALTYRRTNHANLHVEGYRERGTTTTPFDMF 733 (793)
T ss_pred EEEEEEEECCHHCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECCCHHHHHHHHEECCCCCCEEEEEHHHCCCCCCCHHHH
T ss_conf 28999975202036876687778978997427898501466257588766560430388740675042058868841467
Q ss_pred ----ECCCCCCCCHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf ----35776768888999980999899999999984
Q gi|254780655|r 640 ----MQGFGASGSCDLLYQHFGINAIAIVDMVERKL 671 (673)
Q Consensus 640 ----id~Fg~sg~~~el~~~~Gld~~~I~~~i~~~L 671 (673)
+|+|..-.+.-|.+-+.|.++..++++..+.|
T Consensus 734 v~n~~dRf~~~~~a~~~l~~~~~~~~~~~~~~~~~l 769 (793)
T COG3957 734 VLNRLDRFHLVADAGQRLPQNGLTAAYLAQALKDKL 769 (793)
T ss_pred HHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 760200577899999987545621789999999998
No 31
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.97 E-value=9.7e-29 Score=227.08 Aligned_cols=293 Identities=16% Similarity=0.150 Sum_probs=205.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-HHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEC-
Q ss_conf 1013467888998865543322034555674000266634454320-01003257620023567879987288762200-
Q gi|254780655|r 365 ATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDF-SGRYLHYGVREHAMAAAMNGIALHKGLAPYSG- 442 (673)
Q Consensus 365 atr~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~-p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~- 442 (673)
.-|.+.-..|..-..++++++.+.-|+..--+.+ +......++| ++|.+|..|+|+++++++.|+|+ .|++|++.
T Consensus 143 t~reAlr~a~~eEM~rD~~Vfv~GEdVg~~gG~f--kvT~GL~~~FG~~RV~DTPISE~gi~G~aiGaA~-~GlRPIvEi 219 (464)
T PRK11892 143 TVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAY--KVTQGLLQEFGARRVIDTPITEHGFAGVGVGAAM-AGLKPIVEF 219 (464)
T ss_pred EHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCC--CCCHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHH-CCCCCEEEE
T ss_conf 6999999999999850998899804001148701--0342278775830420789995678899999997-599847998
Q ss_pred CCHHHHHHHHHHHHH-HH--------HHHCCCEEECCCCCCCCCCCCCHH-HHCCCCCHHHHHCCCCEEEECCHHHHHHH
Q ss_conf 100355530012454-11--------110000130245433333333101-00022210111012211211201245777
Q gi|254780655|r 443 TFMVFSDYSRPAIRL-AS--------LMGIRVIHVLTHDSIGLGEDGPTH-QPVEHLAALRAIPDLLVLRPADSIETLEC 512 (673)
Q Consensus 443 tf~~F~~~~~~~ir~-~a--------l~~~~v~~v~th~gi~~G~DGpTH-q~iedia~lr~iPnl~v~~P~d~~E~~~~ 512 (673)
.|+-|+..++|||.. +| -+++|+++-.. .|-+.| -|++| |+++ ++|.++|||+|+.|+++.+.+.+
T Consensus 220 mf~dF~~~A~DQIiN~AAK~rymsgGq~~~PiViR~p-~G~g~~-~gaqHSQs~e--~~fahiPGLkVv~Pstp~DAkGL 295 (464)
T PRK11892 220 MTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGP-NGAAAR-VGAQHSQDYA--AWYSHIPGLKVVAPYSAADAKGL 295 (464)
T ss_pred ECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC-CCCCCC-CCCCCCCCHH--HHHHCCCCCEEEEECCHHHHHHH
T ss_conf 6031689999999988888640458861477799813-666667-7766655767--78621787079951899999999
Q ss_pred HHHHHCCCCCCEEEEECCCCCCCC-CCCCCCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 765202567834999524444334-5665532212347379985699729999526889999999999997399439985
Q gi|254780655|r 513 WQVALKEKNRPSVLSLSRQNLPFL-RTQYESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVS 591 (673)
Q Consensus 513 ~~~al~~~~gP~~ir~~R~~~p~~-~~~~~~~~~~~~G~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~ 591 (673)
|+.|+.+. .|+.+.-+|.-.... +.....++.+.+|+..+.| +|.|++||++|.|++.|++||+.|+++||++.|||
T Consensus 296 LkaAIrd~-nPVIflE~k~LY~~~~eVP~~~d~~iPiGkA~V~r-eG~DvTIVsyG~mv~~aleAAe~La~eGIs~EVID 373 (464)
T PRK11892 296 LKAAIRDP-NPVIFLENEILYGQSFEVPKLDDFVLPIGKARIHR-EGKDVTIVSFSIGMTYALKAAEELAKEGIDAEVID 373 (464)
T ss_pred HHHHHHCC-CCEEEEEEHHHCCCCCCCCCCCCCCCCCCCEEEEC-CCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99997389-98899960210378402687544445664058963-79978999757269999999999987399789997
Q ss_pred CCCCCHHCCCCHHHHHHHCCCCCEEEEECCC-CHHHHHHH------------HCCCCCEEEECCCCCCCCH-HHHHHHCC
Q ss_conf 7465810008688999643679779997286-02789998------------4579818983577676888-89999809
Q gi|254780655|r 592 VPCFELFFEQSDSYRAQIIGSSPIKIAIEAG-LRQGWDAF------------IGSDGSFIGMQGFGASGSC-DLLYQHFG 657 (673)
Q Consensus 592 ~~s~k~ld~~~~~~~~~il~~~~~~vtiE~g-~~~g~~~~------------~~~~~~~igid~Fg~sg~~-~el~~~~G 657 (673)
+||+.|||. +..+.++- ++.++|++|++ ...||++- +......++-.+.+ -|. ..|-+.+=
T Consensus 374 LRtL~PLD~--etI~~SVk-KTgRlvVVeE~~~~~GvgaEIaA~I~E~aF~~LdAPv~RV~~~D~P--iP~a~~LE~~~l 448 (464)
T PRK11892 374 LRTIRPMDT--ETIVESVK-KTNRLVTVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLRVTGKDVP--MPYAANLEKLAL 448 (464)
T ss_pred CCCCCCCCH--HHHHHHHH-HHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCC--CCCCHHHHHHHC
T ss_conf 886788998--99999999-8798999968988886799999999998798608984897889879--888977997758
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 99899999999984
Q gi|254780655|r 658 INAIAIVDMVERKL 671 (673)
Q Consensus 658 ld~~~I~~~i~~~L 671 (673)
-+++.|++++++.+
T Consensus 449 P~~~~Iv~Avk~V~ 462 (464)
T PRK11892 449 PSVAEVVEAVKAVC 462 (464)
T ss_pred CCHHHHHHHHHHHH
T ss_conf 99999999999985
No 32
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.97 E-value=7.3e-31 Score=242.45 Aligned_cols=165 Identities=35% Similarity=0.522 Sum_probs=139.7
Q ss_pred CHHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECC
Q ss_conf 10134678889988655-43322034555674000266634454320010032576200235678799872887622001
Q gi|254780655|r 365 ATRKSSELVLEVVNDCL-PELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGT 443 (673)
Q Consensus 365 atr~a~g~~l~~i~~~~-p~iv~~sADl~~St~~~~~~~~~~~~~~~p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~t 443 (673)
++|.++++.|..+++.+ +++++.++|+..|+++...+.....++.+|+||||+||+||+|+++|+|+|++ |++||+++
T Consensus 1 ~~r~a~~~~l~~l~~~~~~~iv~~~~Dl~~~~~~~~~~~f~~~~~~~~~r~i~~gIaE~~~vg~a~GlA~~-G~~pi~~~ 79 (168)
T smart00861 1 ATRKAFGEALAELAERDPERVVVSGADVGGSTGLDRGGVFPDTKGLGPGRVIDTGIAEQAMVGFAAGLALA-GLRPVVAI 79 (168)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHC-CCCCCCCH
T ss_conf 91899999999998569971999836748875775366104444569987564483789999987599875-99642102
Q ss_pred CHHHHHHHHHHHHHHHHHH-CCCEEECCC-CCCCCCCCCCHHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCC
Q ss_conf 0035553001245411110-000130245-43333333310100022210111012211211201245777765202567
Q gi|254780655|r 444 FMVFSDYSRPAIRLASLMG-IRVIHVLTH-DSIGLGEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKN 521 (673)
Q Consensus 444 f~~F~~~~~~~ir~~al~~-~~v~~v~th-~gi~~G~DGpTHq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~ 521 (673)
|+.|++|+++|||+.+.++ .|+ ++++ .|...|+||||||+++|++++|+|||++|+.|+|+.|++.++++++...+
T Consensus 80 ~~~f~~~a~~qi~~~~~~~~~~~--v~~~~~~~~~g~~G~tH~s~~~~~~~~~ip~~~v~~P~~~~e~~~~l~~a~~~~~ 157 (168)
T smart00861 80 FFTFFDRAKDQIRSDGAMGRVPV--VVRHDSGGGVGEDGPTHHSQEDEALLRAIPGLKVVAPSDPAEAKGLLRAAIRRDD 157 (168)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCE--EEEEECEEEECCCCCHHCCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCC
T ss_conf 35788758999986534066773--7886010056688641104443888861799789970999999999999984889
Q ss_pred CCEEEEECCCC
Q ss_conf 83499952444
Q gi|254780655|r 522 RPSVLSLSRQN 532 (673)
Q Consensus 522 gP~~ir~~R~~ 532 (673)
+|.|||++|++
T Consensus 158 ~p~~i~l~~~~ 168 (168)
T smart00861 158 GPPVIRLERKS 168 (168)
T ss_pred CCEEEEECCCC
T ss_conf 98899973899
No 33
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=99.96 E-value=3.6e-27 Score=215.77 Aligned_cols=287 Identities=21% Similarity=0.267 Sum_probs=197.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH-HCCCCCCCHHHHHHHHHHHHHCCCCCCEECC-C
Q ss_conf 1346788899886554332203455567400026663445432001-0032576200235678799872887622001-0
Q gi|254780655|r 367 RKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSG-RYLHYGVREHAMAAAMNGIALHKGLAPYSGT-F 444 (673)
Q Consensus 367 r~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~p~-r~i~~GIaE~~~~~~aaGla~~~g~~p~~~t-f 444 (673)
+.+...+|..-.+++++++++.-|..---+.. ..... -.++|++ |.||+-|+|.+.+++|.|+|+ .|++|++.. |
T Consensus 5 ~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf-~~T~G-L~~kfG~~RV~DTPiaE~gi~G~avGaA~-~GlrPivEiqf 81 (324)
T COG0022 5 IEAINEAMDEEMERDERVVVLGEDVGVYGGVF-RVTKG-LQEKFGEERVIDTPIAESGIAGIAVGAAL-TGLRPIVEIQF 81 (324)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCH-HHCHH-HHHHHCCCCEECCCCCHHHHHHHHHHHHH-CCCCCEEEEEE
T ss_conf 99999999999812998899823523027701-20333-88770854000576521216889999997-08962489863
Q ss_pred HHHHHHHHHHHH--H-------HHHHHCCCEEECCCCCCCCCCCCCHH-HHCCCCCHHHHHCCCCEEEECCHHHHHHHHH
Q ss_conf 035553001245--4-------11110000130245433333333101-0002221011101221121120124577776
Q gi|254780655|r 445 MVFSDYSRPAIR--L-------ASLMGIRVIHVLTHDSIGLGEDGPTH-QPVEHLAALRAIPDLLVLRPADSIETLECWQ 514 (673)
Q Consensus 445 ~~F~~~~~~~ir--~-------~al~~~~v~~v~th~gi~~G~DGpTH-q~iedia~lr~iPnl~v~~P~d~~E~~~~~~ 514 (673)
.-|+--++|||- . ..-..+|+++- +..|-+++ -|..| |.+| +++.++|+++|+.||++.+.+++|.
T Consensus 82 ~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR-~p~G~g~~-~~~~HSqs~e--a~f~h~PGlKVV~PStpyDAKGLL~ 157 (324)
T COG0022 82 ADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIR-TPNGGGIG-GGAQHSQSLE--ALFAHIPGLKVVMPSTPYDAKGLLK 157 (324)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCEECCEEEE-CCCCCCCC-CHHHCCCCHH--HHHHCCCCCEEEECCCHHHHHHHHH
T ss_conf 013699999999999988410489643677997-47877777-4443368889--9983389836981797577788999
Q ss_pred HHHCCCCCCEEEEEC-------CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCE
Q ss_conf 520256783499952-------4444334566553221234737998569972999952688999999999999739943
Q gi|254780655|r 515 VALKEKNRPSVLSLS-------RQNLPFLRTQYESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNIST 587 (673)
Q Consensus 515 ~al~~~~gP~~ir~~-------R~~~p~~~~~~~~~~~~~~G~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~ 587 (673)
.|+++. .|+.+.-+ |+.+| +..+.+.+|+..+.| +|+||+||++|.||+.+++||+.|+++||++
T Consensus 158 aAIrd~-dPViflE~k~lY~~~~~eVP------~~~Y~iPlGkA~i~r-eG~DvTivtyg~mv~~al~AAe~l~~~Gis~ 229 (324)
T COG0022 158 AAIRDP-DPVIFLEHKRLYRSFKGEVP------EEDYTIPLGKAKIVR-EGSDVTIVTYGAMVHTALEAAEELEKEGISA 229 (324)
T ss_pred HHHCCC-CCEEEEECHHHHCCCCCCCC------CCCCCCCCCCEEEEE-CCCCEEEEEECHHHHHHHHHHHHHHHCCCCE
T ss_conf 982589-98799732887565655789------877422156033674-4885699985168899999999986269876
Q ss_pred EEEECCCCCHHCCCCHHHHHHHCCCCCEEEEECC----CCHHHHHHHHCCC--------CCEEEECCCCCCCCH-HHHHH
Q ss_conf 9985746581000868899964367977999728----6027899984579--------818983577676888-89999
Q gi|254780655|r 588 RVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIEA----GLRQGWDAFIGSD--------GSFIGMQGFGASGSC-DLLYQ 654 (673)
Q Consensus 588 ~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE~----g~~~g~~~~~~~~--------~~~igid~Fg~sg~~-~el~~ 654 (673)
.|||+||++|+|.+ .-..++-+.++.+|.-|+ |++..|...+.++ ...++- +--.-|+ ..|-+
T Consensus 230 EVIDLRTl~PlD~e--tIi~SvkKTgR~viV~Ea~~~~g~gaei~A~i~e~~f~~LdAPi~Rv~g--~d~P~p~~~~lE~ 305 (324)
T COG0022 230 EVIDLRTLSPLDKE--TIIASVKKTGRLVIVHEAPKTGGIGAEIAALIAEEAFDYLDAPILRVAG--PDTPVPYSAALEK 305 (324)
T ss_pred EEEECCCCCCCCHH--HHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCC--CCCCCCCCHHHHH
T ss_conf 99724346766799--9999988619689998256567728999999999999751274644347--9889897466776
Q ss_pred HCCCCHHHHHHHHHHHHC
Q ss_conf 809998999999999848
Q gi|254780655|r 655 HFGINAIAIVDMVERKLS 672 (673)
Q Consensus 655 ~~Gld~~~I~~~i~~~L~ 672 (673)
.+=-+++.|.+++++.+.
T Consensus 306 ~~lp~~~~I~~av~~v~~ 323 (324)
T COG0022 306 AYLPNPERIVAAVKKVLE 323 (324)
T ss_pred HHCCCHHHHHHHHHHHHH
T ss_conf 647998999999999962
No 34
>KOG0524 consensus
Probab=99.91 E-value=8.9e-23 Score=183.93 Aligned_cols=294 Identities=17% Similarity=0.236 Sum_probs=203.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECC
Q ss_conf 31013467888998865543322034555674000266634454320010032576200235678799872887622001
Q gi|254780655|r 364 IATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGT 443 (673)
Q Consensus 364 vatr~a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~t 443 (673)
+.-|.+....++.-.+++|+++++.-++.-..+.+- -.....++-=+.|.+|.-|.|....+++.|.|+ .|++|+|.
T Consensus 35 mtvreALn~amdEEm~rD~~VfvmGEeV~qy~Gayk-vtkGL~~K~G~~RV~DTPItE~gFtG~avGAA~-~GLrPi~e- 111 (359)
T KOG0524 35 MTVREALNQAMDEEMDRDPRVFVMGEEVGQYGGAYK-VTKGLLDKFGDKRVLDTPITEMGFTGIAVGAAM-AGLRPICE- 111 (359)
T ss_pred EEHHHHHHHHHHHHHCCCCCEEEECHHHHHCCCEEE-HHHHHHHHCCCCEEECCCCHHCCCCHHHHHHHH-HCCCHHHH-
T ss_conf 549999998889875559847982223542177000-204578860884533574212043115576777-07611454-
Q ss_pred CHHH--HHHHHHHHHHH---------HHHHCCCEEECCCCCCCCCCCCCHH-HHCCCCCHHHHHCCCCEEEECCHHHHHH
Q ss_conf 0035--55300124541---------1110000130245433333333101-0002221011101221121120124577
Q gi|254780655|r 444 FMVF--SDYSRPAIRLA---------SLMGIRVIHVLTHDSIGLGEDGPTH-QPVEHLAALRAIPDLLVLRPADSIETLE 511 (673)
Q Consensus 444 f~~F--~~~~~~~ir~~---------al~~~~v~~v~th~gi~~G~DGpTH-q~iedia~lr~iPnl~v~~P~d~~E~~~ 511 (673)
|.+| +-.+.|||-.. ..+.+|++|-+- .|.+.|- |.-| |.+. +++.++|+++|+.|+.+.+.++
T Consensus 112 fMtfnFsmqAid~IiNsaakt~YmSgG~~~~piVfRGP-nG~~~gv-~AqHSQ~f~--~wy~siPGlkvvapysaedakG 187 (359)
T KOG0524 112 FMTFNFSMQAIDQIINSAAKTHYMSGGQQPVPIVFRGP-NGAAAGV-AAQHSQDFA--SWYGSIPGLKVVAPYSAEDAKG 187 (359)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHCCCCCCEECCEEEECC-CCCCCCH-HHHHHHHHH--HHHCCCCCCEEECCCCHHHHHH
T ss_conf 40001489999999988877750037834025799689-9754305-566510467--8755599835863577455556
Q ss_pred HHHHHHCCCCCCEEEEEC----CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCE
Q ss_conf 776520256783499952----4444334566553221234737998569972999952688999999999999739943
Q gi|254780655|r 512 CWQVALKEKNRPSVLSLS----RQNLPFLRTQYESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNIST 587 (673)
Q Consensus 512 ~~~~al~~~~gP~~ir~~----R~~~p~~~~~~~~~~~~~~G~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~ 587 (673)
+++.|+.+ ++|+++.-. ....+..+.....+..+.+|+..+.| +|.|++|+++-.+|..|++||+.|.++|+++
T Consensus 188 LlKaAIRd-~NPVV~lEnelLYg~~f~i~~E~ls~~fv~p~gkAkier-~G~~iTivt~Sr~v~~~leAA~~L~~~Gvs~ 265 (359)
T KOG0524 188 LLKAAIRD-ENPVVFLENELLYGLSFEIPEEALSKDFVLPLGKAKIER-EGTHITIVTYSRMVGHCLEAAETLVAKGVSA 265 (359)
T ss_pred HHHHHCCC-CCCEEEEECHHHCCCCCCCCHHHCCCCEEEECCCEEEEE-CCCCEEEEEECHHHHHHHHHHHHHHHCCCCC
T ss_conf 88886058-997699841101288756873445755053545023661-5884699985025899999999998669880
Q ss_pred EEEECCCCCHHCCCCHHHHHHHCCCCCEEEEECCCCHH-HHH----H--------HHCCCCCEE-EECCCCCCCCHHHHH
Q ss_conf 99857465810008688999643679779997286027-899----9--------845798189-835776768888999
Q gi|254780655|r 588 RVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIEAGLRQ-GWD----A--------FIGSDGSFI-GMQGFGASGSCDLLY 653 (673)
Q Consensus 588 ~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE~g~~~-g~~----~--------~~~~~~~~i-gid~Fg~sg~~~el~ 653 (673)
.|||++|++|||-+.+ ..++ .++..++|||.+.+. |++ . |+-.....+ |.| -.-|+..-+
T Consensus 266 EVInlrSirP~D~~tI--~~Sv-~KT~~lvtVe~~~p~~gigaei~A~i~E~~fdyLdAPv~rvtg~D---vP~PYa~~l 339 (359)
T KOG0524 266 EVINLRSIRPFDIETI--GASV-KKTNRLVTVEEGWPQFGIGAEICAQIMENAFDYLDAPVQRVTGAD---VPTPYAKTL 339 (359)
T ss_pred EEEEEECCCCCCHHHH--HHHH-HHHCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCC---CCCCCCHHH
T ss_conf 3674102476558999--9887-650538998345666660399999998877755125355322788---898530006
Q ss_pred HHCCC-CHHHHHHHHHHHHC
Q ss_conf 98099-98999999999848
Q gi|254780655|r 654 QHFGI-NAIAIVDMVERKLS 672 (673)
Q Consensus 654 ~~~Gl-d~~~I~~~i~~~L~ 672 (673)
|.+-+ +++.|+.++++.+.
T Consensus 340 E~~a~p~~~~iV~Avk~~~~ 359 (359)
T KOG0524 340 EDWAVPQPADIVTAVKKLCN 359 (359)
T ss_pred HHHCCCCHHHHHHHHHHHHC
T ss_conf 76228987999999998519
No 35
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.89 E-value=4.8e-21 Score=171.39 Aligned_cols=172 Identities=24% Similarity=0.226 Sum_probs=127.4
Q ss_pred CEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77998565201899999997076889988986400038879889888899873068886314799999999999985342
Q gi|254780655|r 73 DRFVLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREE 152 (673)
Q Consensus 73 Dr~v~s~GH~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~ 152 (673)
|.++ ..|-+ ..+....| +++.++.. .+.|+..|.- ......+--.++..|.+++.|+|.|+|.|+.+.
T Consensus 76 D~i~--~~yR~---hg~~la~G---~~~~~~~a--e~~G~~~G~~-~~~~~~~~~~~~iVG~~~p~A~G~A~a~k~~~~- 143 (341)
T TIGR03181 76 DWVF--PSYRD---HAAMLARG---VPLVEILL--YWRGDERGSW-DPEGVNILPPNIPIGTQYLHAAGVAYALKLRGE- 143 (341)
T ss_pred CEEE--ECCCC---HHHHEECC---CCHHHHHH--HHCCCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC-
T ss_conf 9897--15672---36331279---98999999--8559776788-860147688874013465414778889987299-
Q ss_pred CCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC-CCHHHHHHHCCCCCCCCCCC
Q ss_conf 68876784599984362114344557887652202233069996276322322355678-21799886414444444444
Q gi|254780655|r 153 FGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADS-TDQYARFRASGWNTLSVNGH 231 (673)
Q Consensus 153 ~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~-~~~~~~~~a~Gw~~~~vdG~ 231 (673)
+.-++|++|||+.++|.+|||||+|+.|+| ++|+++.||+++++++...... .++..|..+||...+.|||+
T Consensus 144 ------~~V~v~ffGDGA~~eG~fhEalN~Aa~~~L-PviFv~eNN~yaist~~~~~~~~~~i~~ra~~yGi~~~~vDG~ 216 (341)
T TIGR03181 144 ------DNVAVTYFGDGGTSEGDFYEALNFAGVFKA-PVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGN 216 (341)
T ss_pred ------CCEEEEEECCCCCCCCHHHHHHHHHHHHCC-CEEEEEEECCCCCCCCHHHHCCCCHHHHHHHHCCCCEEECCCC
T ss_conf ------988999946886432469999999998389-9899996177357776334237736987514249886744885
Q ss_pred CHHHHHHHHHH----HHHCCCCHHHHHCCCCCCCCC
Q ss_conf 06788888887----511022102220133455570
Q gi|254780655|r 232 DHHAITSTLRK----AQLSDKPTMIACETVIGFGSP 263 (673)
Q Consensus 232 d~~~i~~a~~~----ak~~~kP~~I~~~T~kG~G~~ 263 (673)
|+.+++++.++ +|..++|++|+++|..-.|+.
T Consensus 217 D~~av~~a~~~Av~~~R~g~gP~liE~~TyR~~gHs 252 (341)
T TIGR03181 217 DVLAVYAVTKEAVERARSGGGPTLIEAVTYRLGPHT 252 (341)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC
T ss_conf 679999999999999855899889999850278867
No 36
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=99.89 E-value=2.1e-23 Score=188.47 Aligned_cols=154 Identities=18% Similarity=0.236 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-HHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEC-CCHH
Q ss_conf 467888998865543322034555674000266634454320-01003257620023567879987288762200-1003
Q gi|254780655|r 369 SSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDF-SGRYLHYGVREHAMAAAMNGIALHKGLAPYSG-TFMV 446 (673)
Q Consensus 369 a~g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~-p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~-tf~~ 446 (673)
+...+|..+.+.+|+++...+|+..+.+.. +...-+.++| |+|+||+||+||+|+++|+|+|+ .|++||+. .|+.
T Consensus 2 Ai~~al~~~~~~d~~v~~~g~dv~~~~g~~--~~t~gl~~~fgp~R~~d~gIaE~~~vg~a~GlAl-~G~~Pvv~~~~~~ 78 (167)
T cd07036 2 AINEALDEEMERDPRVVVLGEDVGDYGGVF--KVTKGLLDKFGPDRVIDTPIAEAGIVGLAVGAAM-NGLRPIVEIMFAD 78 (167)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCCH--HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH-CCCEEEEEEEEHH
T ss_conf 799999999976989999957837477805--7747999985766323799688999999999998-5993798862255
Q ss_pred HHHHHHHHHH-HHHH--------HHCCCEEECCCCCCCCCCCCCHH-HHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHH
Q ss_conf 5553001245-4111--------10000130245433333333101-000222101110122112112012457777652
Q gi|254780655|r 447 FSDYSRPAIR-LASL--------MGIRVIHVLTHDSIGLGEDGPTH-QPVEHLAALRAIPDLLVLRPADSIETLECWQVA 516 (673)
Q Consensus 447 F~~~~~~~ir-~~al--------~~~~v~~v~th~gi~~G~DGpTH-q~iedia~lr~iPnl~v~~P~d~~E~~~~~~~a 516 (673)
|+.|+++||+ .+|. .++|+++...+.+ .+..|||| |.++ ++||+||||+|+.|+|+.|++.++++|
T Consensus 79 Fl~~a~dQi~n~~a~~~~~s~g~~~~pvvir~~~g~--~~~~g~~Hs~~~~--a~~~~iPgl~V~~Ps~~~d~~~ll~~a 154 (167)
T cd07036 79 FALPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGG--GIGGGAQHSQSLE--AWFAHIPGLKVVAPSTPYDAKGLLKAA 154 (167)
T ss_pred HHHHHHHHHHHHHHHHEECCCCCCCCCEEEEECCCC--CCCCCCCCCCCHH--HHHCCCCCCEEEEECCHHHHHHHHHHH
T ss_conf 540059999977567612038940588899960667--7674530036879--998079996899729999999999999
Q ss_pred HCCCCCCEEEEECC
Q ss_conf 02567834999524
Q gi|254780655|r 517 LKEKNRPSVLSLSR 530 (673)
Q Consensus 517 l~~~~gP~~ir~~R 530 (673)
+++ ++|+++.-+|
T Consensus 155 ~~~-~~Pv~~~E~k 167 (167)
T cd07036 155 IRD-DDPVIFLEHK 167 (167)
T ss_pred HHC-CCCEEEEECC
T ss_conf 839-9978999339
No 37
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=99.89 E-value=4.1e-20 Score=164.64 Aligned_cols=139 Identities=23% Similarity=0.227 Sum_probs=114.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 87306888631479999999999998534268876784599984362114344557887652202233069996276322
Q gi|254780655|r 123 AGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISI 202 (673)
Q Consensus 123 ~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si 202 (673)
.++--++++.|++++.|+|.|++.++.+...+..--+.-++|++|||+++||.+|||||+|+.|+| ++|+++.||+++|
T Consensus 123 ~~~~g~~~ivg~~~p~A~G~A~a~~~~~~~~k~~g~~~V~v~ffGDGat~eG~fhEalN~A~~~~L-PviFv~eNN~yai 201 (343)
T CHL00149 123 HNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKDTQELRVTACFFGDGTTNNGQFFECLNMAVLWKL-PIIFVVENNQWAI 201 (343)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCC-CEEEEEEECCCCC
T ss_conf 271245534334530699999999987543024789827999835763320389999999998479-7689998788146
Q ss_pred CCCCCCCCC-CCHHHHHHHCCCCCCCCCCCCHHHHHHHHHH----HHHCCCCHHHHHCCCCCCCC
Q ss_conf 322355678-2179988641444444444406788888887----51102210222013345557
Q gi|254780655|r 203 DGPISLADS-TDQYARFRASGWNTLSVNGHDHHAITSTLRK----AQLSDKPTMIACETVIGFGS 262 (673)
Q Consensus 203 ~~~~~~~~~-~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~----ak~~~kP~~I~~~T~kG~G~ 262 (673)
+.+...... .++..|..+||...+.|||+|+.+++++.++ +|+.++|++|+++|..-.|+
T Consensus 202 st~~~~~~~~~~i~~ra~~yGi~~~~vDGnD~~av~~~~~~Ai~~aR~g~gP~lie~~TyR~~gH 266 (343)
T CHL00149 202 GMAHHRSTSEPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARSGQGPTLIEALTYRFRGH 266 (343)
T ss_pred CCCHHHCCCCCHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCC
T ss_conf 57732305763377888656997201798789999999999999845699988999986079887
No 38
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=99.87 E-value=2.2e-20 Score=166.68 Aligned_cols=173 Identities=25% Similarity=0.286 Sum_probs=129.0
Q ss_pred CEEEEECCCCHHHHHHHHHHCCCCCCCHHHHH-HH-HCCCCCC-----CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 77998565201899999997076889988986-40-0038879-----88988889987306888631479999999999
Q gi|254780655|r 73 DRFVLSAGHGSMLYYALLYLLGYQDVTIEDIK-NF-RTIGSKT-----AGHPEYGSCAGIEATTGPLGQGIANAVGMAIA 145 (673)
Q Consensus 73 Dr~v~s~GH~s~~~Y~~~~l~G~~~~~~e~l~-~~-r~~~s~~-----~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a 145 (673)
|. |+ ..|-+ .++....|. +++++. .+ -+.++.. +.|-- ....++-.+++++|.+++.|+|.|+|
T Consensus 49 D~-~~-~~yR~---~~~~la~G~---~~~~~~~e~~g~~~g~~~Gr~gs~H~~-~~~~~~~~~~~~vg~~~p~a~G~A~a 119 (293)
T cd02000 49 DW-VF-PTYRD---HGHALARGV---DLKEMLAELFGKETGPCKGRGGSMHIG-DKEKNFFGGNGIVGGQVPLAAGAALA 119 (293)
T ss_pred CE-EE-ECCCH---HHHHHHHCC---CHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCCEECCCCCCCCCCCHHHHHHHH
T ss_conf 98-98-14520---899999099---999999998257778888888868588-71020504654124663347767899
Q ss_pred HHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC-CCHHHHHHHCCCC
Q ss_conf 998534268876784599984362114344557887652202233069996276322322355678-2179988641444
Q gi|254780655|r 146 ERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADS-TDQYARFRASGWN 224 (673)
Q Consensus 146 ~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~-~~~~~~~~a~Gw~ 224 (673)
.|+.+. +.-++|++|||++.||.+|||||+|+.|+| ++|+++.||+++|+++++.+.. .++..|..+||..
T Consensus 120 ~k~~~~-------~~v~v~~~GDGa~~~G~f~EalN~A~~~~L-Pvlfv~enN~yaist~~~~~~~~~~~~~r~~~~gi~ 191 (293)
T cd02000 120 LKYRGE-------DRVAVCFFGDGATNEGDFHEALNFAALWKL-PVIFVCENNGYAISTPTSRQTAGTSIADRAAAYGIP 191 (293)
T ss_pred HHHHCC-------CCEEEEEECCCCCCCCHHHHHHHHHHHCCC-CEEEEEEECCEECCCCHHHHCCCCCHHHHHHHCCCC
T ss_conf 997589-------988999716874551479999998865379-879999748730235688732774487735326987
Q ss_pred CCCCCCCCHHHHHHHHHH----HHHCCCCHHHHHCCCCCCCC
Q ss_conf 444444406788888887----51102210222013345557
Q gi|254780655|r 225 TLSVNGHDHHAITSTLRK----AQLSDKPTMIACETVIGFGS 262 (673)
Q Consensus 225 ~~~vdG~d~~~i~~a~~~----ak~~~kP~~I~~~T~kG~G~ 262 (673)
.+.|||+|+.++++++++ +|+.++|++|+++|..-.|+
T Consensus 192 ~~~vDG~D~~~v~~~~~~Ai~~~R~~~gP~lie~~TyR~~gH 233 (293)
T cd02000 192 GIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGH 233 (293)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCC
T ss_conf 699748789999999999999985389988999985616755
No 39
>pfam00676 E1_dh Dehydrogenase E1 component. This family uses thiamine pyrophosphate as a cofactor. This family includes pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate dehydrogenase.
Probab=99.87 E-value=9.4e-20 Score=162.03 Aligned_cols=132 Identities=26% Similarity=0.345 Sum_probs=112.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf 73068886314799999999999985342688767845999843621143445578876522022330699962763223
Q gi|254780655|r 124 GIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISID 203 (673)
Q Consensus 124 ~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~ 203 (673)
++--.++++|.+++.|+|.|+|.|+.+. +.-++|++|||+.++|.+|||||+|+.|+| ++|+++.||+++|+
T Consensus 98 ~~~~~~~~vg~~~~~avG~A~a~k~~~~-------~~v~v~~~GDGa~~~G~f~EalN~A~~~~l-Pvifv~eNN~yais 169 (303)
T pfam00676 98 RFYGGNGIVGAQVPLGAGIALAAKYRGK-------KEVAITLFGDGATNQGQFFEALNFAALWKL-PVIFVCENNQYAIS 169 (303)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCC-------CCEEEEEECCCCCCCCHHHHHHHHHHHCCC-CEEEEEEECCCCCC
T ss_conf 5147874130482265668999996389-------987999967997523299999998754389-87999952773366
Q ss_pred CCCCCCCC-CCHHHHHHHCCCCCCCCCCCCHHHHHHHHH----HHHHCCCCHHHHHCCCCCCCCC
Q ss_conf 22355678-217998864144444444440678888888----7511022102220133455570
Q gi|254780655|r 204 GPISLADS-TDQYARFRASGWNTLSVNGHDHHAITSTLR----KAQLSDKPTMIACETVIGFGSP 263 (673)
Q Consensus 204 ~~~~~~~~-~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~----~ak~~~kP~~I~~~T~kG~G~~ 263 (673)
++++.... .++..|.++||.....|||+|+.+++++.+ .+|...+|++|+++|..-.|++
T Consensus 170 t~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~aR~g~gP~lie~~tyR~~gHs 234 (303)
T pfam00676 170 TPAERSSASTYYADRARGYGIPGIRVDGMDPLAVYQAVKFAAERARTGNGPTLIELVTYRYGGHS 234 (303)
T ss_pred CCHHHHCCCCCHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC
T ss_conf 66645147554888865258028964886589999999999999864899889987511378667
No 40
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.87 E-value=1.6e-19 Score=160.37 Aligned_cols=131 Identities=24% Similarity=0.312 Sum_probs=113.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf 73068886314799999999999985342688767845999843621143445578876522022330699962763223
Q gi|254780655|r 124 GIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISID 203 (673)
Q Consensus 124 ~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~ 203 (673)
++-.+++++|.+++.|+|.|+|.|+.+. +.-++|++|||+++||.+|||||+|+.|+| ++|+++.||+++|+
T Consensus 104 ~~~~~~~ivg~~~p~A~G~A~a~k~~~~-------~~v~v~~~GDGa~~~G~f~EalN~A~~~~l-Pvifv~eNN~yais 175 (315)
T TIGR03182 104 NFYGGHGIVGAQVPLATGLAFANKYRGN-------DNVTACFFGDGAANQGQFYESFNMAALWKL-PVIFVIENNLYAMG 175 (315)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCC-------CCEEEEEECCCCCCCCHHHHHHHHHHCCCC-CEEEEEEECCCCCC
T ss_conf 7778873040374387769999986089-------987999957886653439999988741489-88999952874155
Q ss_pred CCCCCCCCC-CHHHHHHHCCCCCCCCCCCCHHHHHHHHH----HHHHCCCCHHHHHCCCCCCCC
Q ss_conf 223556782-17998864144444444440678888888----751102210222013345557
Q gi|254780655|r 204 GPISLADST-DQYARFRASGWNTLSVNGHDHHAITSTLR----KAQLSDKPTMIACETVIGFGS 262 (673)
Q Consensus 204 ~~~~~~~~~-~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~----~ak~~~kP~~I~~~T~kG~G~ 262 (673)
++++..... ++..|.++||...+.|||+|+.+++++.+ .+|..++|++|+++|..-.|+
T Consensus 176 t~~~~~~~~~~i~~ra~~~gi~~~~vDGnD~~av~~~~~~Ai~~~R~g~gP~lie~~tyR~~gH 239 (315)
T TIGR03182 176 TSVERSSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGH 239 (315)
T ss_pred CCHHHHCCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCC
T ss_conf 7677753663366655436998589835778999999999999975599988999874268888
No 41
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=99.84 E-value=1.2e-18 Score=154.01 Aligned_cols=133 Identities=28% Similarity=0.351 Sum_probs=111.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf 73068886314799999999999985342688767845999843621143445578876522022330699962763223
Q gi|254780655|r 124 GIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISID 203 (673)
Q Consensus 124 ~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~ 203 (673)
++-...|+.|++++.|+|+|+|.|+.+.. +.-++|++|||+.++|.+|||||+|+.||| ++|+++.||++.||
T Consensus 130 ~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~------~~Va~~~~GDGat~qG~FhEalN~A~v~kl-Pvvf~ieNN~yAiS 202 (358)
T COG1071 130 GFLGGSGIVGTQIPLAAGAALALKYRGTK------DGVAVAFFGDGATNQGDFHEALNFAAVWKL-PVVFVIENNQYAIS 202 (358)
T ss_pred CCCCCCCEECCCCCHHHHHHHHHHHHCCC------CCEEEEEECCCCCCCCHHHHHHHHHHHHCC-CEEEEEECCCCEEE
T ss_conf 45787840466534799999999974899------818999945786553339999899998569-87999966871670
Q ss_pred CCCCCCCCCC-HHHHHHHCCCCCCCCCCCCHHHHHHHHHH----HHHCCCCHHHHHCCCCCCCCC
Q ss_conf 2235567821-79988641444444444406788888887----511022102220133455570
Q gi|254780655|r 204 GPISLADSTD-QYARFRASGWNTLSVNGHDHHAITSTLRK----AQLSDKPTMIACETVIGFGSP 263 (673)
Q Consensus 204 ~~~~~~~~~~-~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~----ak~~~kP~~I~~~T~kG~G~~ 263 (673)
.+...+...+ +..|-.+||...++|||+|+.+++++.++ |+..+.|++|++.|..=.|++
T Consensus 203 vp~~~q~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS 267 (358)
T COG1071 203 VPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHS 267 (358)
T ss_pred CCHHHCCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCC
T ss_conf 45664033246775501058872787797799999999999999974899889999875358887
No 42
>KOG1182 consensus
Probab=99.69 E-value=1.9e-16 Score=138.13 Aligned_cols=154 Identities=25% Similarity=0.342 Sum_probs=122.5
Q ss_pred CCCCHHHHHHHH----C---CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf 889988986400----0---388798898888998730688863147999999999999853426887678459998436
Q gi|254780655|r 96 QDVTIEDIKNFR----T---IGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGD 168 (673)
Q Consensus 96 ~~~~~e~l~~~r----~---~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGD 168 (673)
+++++|++.+-+ . .|--.|-|=-..+..++-.| -||.+.++.|+|.|+|.|..+.. |..++|++||
T Consensus 153 Rgftle~f~~qCyGn~~d~gkGrQMPvHyGs~elnf~tis-splatqlpqAvGaaYa~k~~~~n------nac~V~yfGd 225 (432)
T KOG1182 153 RGFTLEEFMNQCYGNKSDLGKGRQMPVHYGSKELNFVTIS-SPLATQLPQAVGAAYALKMRKKN------NACAVTYFGD 225 (432)
T ss_pred CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEC-CHHHHCCCHHHHHHHHHHHCCCC------CEEEEEEECC
T ss_conf 4852999998742785301466536521375523269961-55430262655456665404467------8079999457
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC-CHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH--
Q ss_conf 21143445578876522022330699962763223223556782-179988641444444444406788888887511--
Q gi|254780655|r 169 GCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADST-DQYARFRASGWNTLSVNGHDHHAITSTLRKAQL-- 245 (673)
Q Consensus 169 G~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~-~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak~-- 245 (673)
|+.+||.++-|+|+|+.++. ++|+|+.||+..||+|+++++.. -+..|-.+||...|+|||||..+++.|.+.|+.
T Consensus 226 G~aSEGD~HA~~NfAAtle~-Pvif~CRNNG~AISTptseQyr~DGIa~kG~aYGi~sIRVDGnD~lAvYnA~k~ARe~a 304 (432)
T KOG1182 226 GAASEGDAHAAFNFAATLEC-PVIFFCRNNGWAISTPTSEQYRGDGIAVKGPAYGIRSIRVDGNDALAVYNAVKEAREMA 304 (432)
T ss_pred CCCCCCCHHHHHHHHHHHCC-CEEEEECCCCEEECCCCHHHHCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 86666532333207877279-88999827975640564787067855873465635799866831679999889999998
Q ss_pred --CCCCHHHHHCCC
Q ss_conf --022102220133
Q gi|254780655|r 246 --SDKPTMIACETV 257 (673)
Q Consensus 246 --~~kP~~I~~~T~ 257 (673)
.++|++|++.|.
T Consensus 305 v~e~rPvliEamtY 318 (432)
T KOG1182 305 VTEQRPVLIEAMTY 318 (432)
T ss_pred HHCCCCHHHHHHHH
T ss_conf 75168603564566
No 43
>pfam02780 Transketolase_C Transketolase, C-terminal domain. The C-terminal domain of transketolase has been proposed as a regulatory molecule binding site.
Probab=99.65 E-value=2.1e-15 Score=130.64 Aligned_cols=110 Identities=21% Similarity=0.202 Sum_probs=89.8
Q ss_pred CCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCCCCCEEEEECCCC-----
Q ss_conf 737998569972999952688999999999999739943998574658100086889996436797799972860-----
Q gi|254780655|r 549 GAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIEAGL----- 623 (673)
Q Consensus 549 G~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE~g~----- 623 (673)
|++.+++ +|.|++||++|.|+++|++|++.|+++||+++|||++|+||||+ +.+.+.+.++..++|+|++.
T Consensus 1 Gk~~~~~-~G~di~ii~~G~~~~~al~aa~~L~~~gi~~~vid~~~ikPlD~---~~i~~~~~~~~~vvtvEe~~~~gG~ 76 (124)
T pfam02780 1 GKAEILR-EGDDVTIVAYGSMVHEALEAAEELAAEGISAEVIDLRTVKPLDE---DTILESVKKTGRLVVVEEAVPRGGF 76 (124)
T ss_pred CCEEEEE-ECCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCH---HHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf 9459998-28979999847899999999999877598569974236436678---9999987334868998468867868
Q ss_pred HHHHHHHHCCC--------CCEEEE-CCCCCCCCHHHHHHHCCCCHHHH
Q ss_conf 27899984579--------818983-57767688889999809998999
Q gi|254780655|r 624 RQGWDAFIGSD--------GSFIGM-QGFGASGSCDLLYQHFGINAIAI 663 (673)
Q Consensus 624 ~~g~~~~~~~~--------~~~igi-d~Fg~sg~~~el~~~~Gld~~~I 663 (673)
+..+.+++..+ ...+|+ |.|.+| ++.+++++||||+++|
T Consensus 77 Gs~i~~~l~e~~~~~l~~~v~~ig~pd~~ip~-s~~~~~~~~Gl~~~~I 124 (124)
T pfam02780 77 GAEVAAALAEEGFDYLDAPVLRVGGPDTPIPH-SPALELAYLGLTAEKI 124 (124)
T ss_pred HHHHHHHHHHHCHHHCCCCEEEECCCCCCCCC-CHHHHHHHCCCCHHHC
T ss_conf 99999999985665449996997479898999-9999998849991239
No 44
>pfam09364 XFP_N XFP N-terminal domain. Bacterial enzyme splits fructose-6-P and/or xylulose-5-P with the aid of inorganic phosphate into either acetyl-P and erythrose-4-P and/or acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22. This family is distantly related to transketolases e.g. pfam02779.
Probab=99.63 E-value=2.9e-15 Score=129.52 Aligned_cols=244 Identities=25% Similarity=0.382 Sum_probs=163.8
Q ss_pred CHHHHHHHHHHH---HHHHHHHHHH-C----------------CCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEE
Q ss_conf 889999999999---9999999973-8----------------8976431368999999843325445778988788779
Q gi|254780655|r 16 DDDYKKMADAIR---FLSMDAIENV-N----------------SGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRF 75 (673)
Q Consensus 16 ~~~l~~~a~~iR---~~~~~~v~~a-~----------------~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~ 75 (673)
+++|+++-+.-| .+++.+|.-. | =||-|.+=|..=+++-|-+..-++|.+ =.|
T Consensus 4 ~~~l~~~d~ywRAaNYLsvgqIYL~dNpLL~~pL~~ehiKprllGHWGT~PGlnfiYaHlNr~I~~~dl~-------mi~ 76 (379)
T pfam09364 4 DEELKKLDKYWRAANYLAAGQIYLRDNPLLREPLKPEDIKHRLLGHWGTSPGLSFLYAHLNRIINKYDQN-------MLY 76 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-------EEE
T ss_conf 8999999999999878888999870381006999857677544675778704999999988998745887-------699
Q ss_pred EEECCCCHHHHHHHHHHCC-----CCCCCH--HHHHHH-HCCCC--CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9856520189999999707-----688998--898640-00388--7988988889987306888631479999999999
Q gi|254780655|r 76 VLSAGHGSMLYYALLYLLG-----YQDVTI--EDIKNF-RTIGS--KTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIA 145 (673)
Q Consensus 76 v~s~GH~s~~~Y~~~~l~G-----~~~~~~--e~l~~~-r~~~s--~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a 145 (673)
|.-.||+.|++-+..+|.| |.+++. +.|++| |||.- ..|+|.. .++||--..-|-||-++|.|.|.++.
T Consensus 77 i~GPGHGgpa~~an~yLeGtyse~YP~i~~d~~Gm~~lfkqFSfPgGipSH~~-petPGsIhEGGELGYsLshA~GAv~D 155 (379)
T pfam09364 77 VVGPGHGGPAMVSPSYLEGSYSEFYPEITFDEEGLKKLFKQFSFPGGIPSHMA-PETPGSIHEGGELGYALSHAYGAVFD 155 (379)
T ss_pred EECCCCCHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHHHCCCCCC
T ss_conf 85698762555544430343222178998688999999984899898767678-99997424575301355643056458
Q ss_pred HHHHHHHCCCCCCCCEEEEEECCCCCCCH---HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC--CCCCHHHHHHH
Q ss_conf 99853426887678459998436211434---45578876522022330699962763223223556--78217998864
Q gi|254780655|r 146 ERKLREEFGDVLIDHYTYVLVGDGCLMEG---ISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLA--DSTDQYARFRA 220 (673)
Q Consensus 146 ~k~~~~~~~~~~~d~~v~~iiGDG~l~eG---~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~--~~~~~~~~~~a 220 (673)
+- |--|.||+||||...| .+|-+-.|..--.-.-+.=|+.-|++.|+.+|-.. ..+++...|++
T Consensus 156 --------nP---dLiva~VvGDGEaETGPlAtsWhsnkFlnP~~dGaVLPILhLNGyKI~npTilar~~~~EL~~lf~G 224 (379)
T pfam09364 156 --------NP---DLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISDEELRKLFEG 224 (379)
T ss_pred --------CC---CEEEEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCEEECCCCHHHHHHHHHH
T ss_conf --------98---8689997468632357410111444335813366403024205631268745322898999999842
Q ss_pred CCCCCCCCCCCCHHHHHHHHH---------------HHHHC---CCC--HHHHHCCCCCCCCCC------CCCCCCCCCC
Q ss_conf 144444444440678888888---------------75110---221--022201334555700------0477110334
Q gi|254780655|r 221 SGWNTLSVNGHDHHAITSTLR---------------KAQLS---DKP--TMIACETVIGFGSPN------RAGTNKVHGS 274 (673)
Q Consensus 221 ~Gw~~~~vdG~d~~~i~~a~~---------------~ak~~---~kP--~~I~~~T~kG~G~~~------~e~~~~~HG~ 274 (673)
+||+.+-|+|+|..++...+. +||.. .+| -+|+.+|.|||..|. .|++.++|+-
T Consensus 225 ~Gy~p~~Veg~d~~~~h~~mA~~ld~~~~~I~~iq~~AR~~~~~~rP~WPmIvlRtPKGWTgPk~vdG~~iEGt~RaHQV 304 (379)
T pfam09364 225 YGYEPYFVEGHDPESMHRLMAETLDWAVEEIHDIQHAARSNREGSRPRWPMIILRTPKGWTGPKYVDGKKTEGSFRAHQV 304 (379)
T ss_pred CCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCEEECCCCEEEEC
T ss_conf 79841797079858899999999999999999999999728998788898899968987888753488672065022005
Q ss_pred CCCH
Q ss_conf 3722
Q gi|254780655|r 275 ALGQ 278 (673)
Q Consensus 275 ~l~~ 278 (673)
|+..
T Consensus 305 Pl~~ 308 (379)
T pfam09364 305 PLAL 308 (379)
T ss_pred CCCC
T ss_conf 6787
No 45
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.57 E-value=1.4e-14 Score=124.57 Aligned_cols=174 Identities=25% Similarity=0.414 Sum_probs=128.6
Q ss_pred CCCCHHHHHHHHHHCC-----CCCCC--HHHHHHH-HCCCC--CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 6520189999999707-----68899--8898640-00388--7988988889987306888631479999999999998
Q gi|254780655|r 79 AGHGSMLYYALLYLLG-----YQDVT--IEDIKNF-RTIGS--KTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERK 148 (673)
Q Consensus 79 ~GH~s~~~Y~~~~l~G-----~~~~~--~e~l~~~-r~~~s--~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~ 148 (673)
.||+.|++-+..+|.| |.+++ .+.|++| |||.- ..|.|.. .++||-....|-||.+||.|.|.++.
T Consensus 2 PGHGgpa~~a~~yLeGtyse~yp~~~~d~~Gm~~l~~qFS~pgGipSH~~-PetPGsIhEGGELGYsLshA~GA~~D--- 77 (227)
T cd02011 2 PGHGGPAVLANLYLEGSYSEFYPEISQDEEGMRKLFKQFSFPGGIPSHAA-PETPGSIHEGGELGYSLSHAYGAVFD--- 77 (227)
T ss_pred CCCCHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHHHCCCCCC---
T ss_conf 98646677666541343421268888778999999985899898767778-99997506676302355543055348---
Q ss_pred HHHHCCCCCCCCEEEEEECCCCCCCH---HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC--CCCCCHHHHHHHCCC
Q ss_conf 53426887678459998436211434---4557887652202233069996276322322355--678217998864144
Q gi|254780655|r 149 LREEFGDVLIDHYTYVLVGDGCLMEG---ISQEAISFAGHLGLSKLIVLWDNNGISIDGPISL--ADSTDQYARFRASGW 223 (673)
Q Consensus 149 ~~~~~~~~~~d~~v~~iiGDG~l~eG---~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~--~~~~~~~~~~~a~Gw 223 (673)
|- |--+.||+||||...| .+|.+-.+..-..-.-++=|++-|++.|+.++-. ...+++...|+++||
T Consensus 78 -----nP---dliva~VvGDGEaETGPlAtsW~s~kflnP~~dGaVLPIlhLNGyKIsnpTilar~~~~eL~~lf~G~Gy 149 (227)
T cd02011 78 -----NP---DLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISHEELEALFRGYGY 149 (227)
T ss_pred -----CC---CEEEEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCEEECCCCHHHHHHHHHHCCC
T ss_conf -----99---8699998568632358412222220015833477244577416740268854312798999999841898
Q ss_pred CCCCCCCCCHHHHHHHH----H-----------HHHH---CCCC--HHHHHCCCCCCCCCC
Q ss_conf 44444444067888888----8-----------7511---0221--022201334555700
Q gi|254780655|r 224 NTLSVNGHDHHAITSTL----R-----------KAQL---SDKP--TMIACETVIGFGSPN 264 (673)
Q Consensus 224 ~~~~vdG~d~~~i~~a~----~-----------~ak~---~~kP--~~I~~~T~kG~G~~~ 264 (673)
+.+-|+|.|.+++...+ + +||. ..+| -+|+.+|.|||..|.
T Consensus 150 ~p~~Veg~dp~~~h~~mA~~ld~a~~~I~~iq~~Ar~~~~~~rp~WPmivlRtPKGWtgPk 210 (227)
T cd02011 150 EPYFVEGDDPETMHQAMAATLDWAIEEIKAIQKRAREGGDASRPRWPMIVLRTPKGWTGPK 210 (227)
T ss_pred CCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCC
T ss_conf 2179778980689999999999999999999999985799878889889996899888875
No 46
>KOG0225 consensus
Probab=99.49 E-value=1.7e-13 Score=116.70 Aligned_cols=137 Identities=28% Similarity=0.423 Sum_probs=104.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC
Q ss_conf 88863147999999999999853426887678459998436211434455788765220223306999627632232235
Q gi|254780655|r 128 TTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPIS 207 (673)
Q Consensus 128 ~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~ 207 (673)
..|-.|.+++.+.|+|+|.||.+. +.-.+++-|||+.+.|+.|||+|.|.-|+| ++|+++.||.+.+-++..
T Consensus 163 GnGIVGAQiPLGaGia~A~kY~~~-------~~v~~alYGDGAaNQGQ~fEa~NMA~LW~L-P~IFvCENN~yGMGTs~~ 234 (394)
T KOG0225 163 GNGIVGAQIPLGAGIAFAQKYNRE-------DAVCFALYGDGAANQGQVFEAFNMAALWKL-PVIFVCENNHYGMGTSAE 234 (394)
T ss_pred CCCEECCCCCCCCCHHHHHHHCCC-------CCEEEEEECCCCCCCHHHHHHHHHHHHHCC-CEEEEECCCCCCCCCCHH
T ss_conf 664232577731128999974368-------865999954665444038988539998689-879998268876676034
Q ss_pred CCCC-CCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH----CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCH----
Q ss_conf 5678-2179988641444444444406788888887511----022102220133455570004771103343722----
Q gi|254780655|r 208 LADS-TDQYARFRASGWNTLSVNGHDHHAITSTLRKAQL----SDKPTMIACETVIGFGSPNRAGTNKVHGSALGQ---- 278 (673)
Q Consensus 208 ~~~~-~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak~----~~kP~~I~~~T~kG~G~~~~e~~~~~HG~~l~~---- 278 (673)
.... ++.++|- .| ..-+.|||.|+.++..|.+.|++ .+.|.++++.|- ++||+.+++
T Consensus 235 Rasa~teyykRG-~y-iPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TY------------Ry~GHSmSDPg~s 300 (394)
T KOG0225 235 RASASTEYYKRG-DY-IPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTY------------RYHGHSMSDPGTS 300 (394)
T ss_pred HHHCCHHHHHCC-CC-CCCEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEE------------EECCCCCCCCCCC
T ss_conf 320382777506-87-875578783124589999999999753799879998634------------6546546899865
Q ss_pred ----HHHHHHHH
Q ss_conf ----33212566
Q gi|254780655|r 279 ----EEIKATRK 286 (673)
Q Consensus 279 ----ee~~~~~k 286 (673)
||+...|+
T Consensus 301 YRtReEiq~vR~ 312 (394)
T KOG0225 301 YRTREEIQEVRQ 312 (394)
T ss_pred CCHHHHHHHHHH
T ss_conf 211899998876
No 47
>KOG0525 consensus
Probab=99.48 E-value=2.3e-13 Score=115.74 Aligned_cols=243 Identities=16% Similarity=0.263 Sum_probs=166.6
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHH---HHHHHH-HHHH--------HCCCEEECCCCCCCCCC
Q ss_conf 01003257620023567879987288762200100355530---012454-1111--------00001302454333333
Q gi|254780655|r 411 SGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVFSDYS---RPAIRL-ASLM--------GIRVIHVLTHDSIGLGE 478 (673)
Q Consensus 411 p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~tf~~F~~~~---~~~ir~-~al~--------~~~v~~v~th~gi~~G~ 478 (673)
.+|.|+.-..||..+++-.|+|. .|-..+..+ +|.||. ||||-. ++-- ++.-.-+-+.=|. +|.
T Consensus 86 k~rvfntplceqgivgfgig~aa-~g~~aiaei--qfadyifpafdqivneaakfryrsgnqfncg~ltir~p~ga-vgh 161 (362)
T KOG0525 86 KDRVFNTPLCEQGIVGFGIGLAA-MGATAIAEI--QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPWGA-VGH 161 (362)
T ss_pred CCCCCCCCHHHCCCCEECHHHHH-CCCCEEEEE--EECCCCCHHHHHHHHHHHHHEECCCCCCCCCCEEEECCCCC-CCC
T ss_conf 56302672022154200131254-066158888--50221225589998787762523578445676577455442-455
Q ss_pred CCCHH-HHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEEC----CCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 33101-0002221011101221121120124577776520256783499952----444433456655322123473799
Q gi|254780655|r 479 DGPTH-QPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLS----RQNLPFLRTQYESNNLCALGAYDY 553 (673)
Q Consensus 479 DGpTH-q~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~----R~~~p~~~~~~~~~~~~~~G~~~~ 553 (673)
-|--| |+-| +.+.+.|+++|+-|..+.|.+.++..++.+. +|+++--| |+.+. ...+.++.+..+..++
T Consensus 162 g~~yhsqspe--aff~h~pgikvviprsp~qakglllscirdp-np~iffepk~lyr~a~e---dvp~~dy~iplsqaev 235 (362)
T KOG0525 162 GALYHSQSPE--AFFCHVPGIKVVIPRSPRQAKGLLLSCIRDP-NPCIFFEPKILYRQAVE---DVPEGDYMIPLSQAEV 235 (362)
T ss_pred CCCCCCCCCH--HHEECCCCCEEEECCCCCHHHCEEEEECCCC-CCEEEECHHHHHHHHHH---HCCCCCCCCCCCHHHH
T ss_conf 5301568823--5300489836982489504303142010699-96578452899987663---0787773343217777
Q ss_pred EECCCCCEEEEECCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHCCCCHHHHHHHCCCCCEEEEECCCCHHHHHHH--
Q ss_conf 85699729999526889999999999997-399439985746581000868899964367977999728602789998--
Q gi|254780655|r 554 ISTPNAQVTIFSSGSELKIAVEACEILSS-RNISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIEAGLRQGWDAF-- 630 (673)
Q Consensus 554 ~~~~~~dv~iia~G~~v~~al~aa~~L~~-~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE~g~~~g~~~~-- 630 (673)
+| +|+|++|++.|..|+.++++|..-++ .|+++.|||+.++-|.|+. ....++.+..+++|+-|+-+.+|++.-
T Consensus 236 ir-eg~ditlv~wgtqvh~i~e~a~l~~ek~giscevidlkti~pwd~d--~v~~sv~ktgrllisheapvtggfgaeia 312 (362)
T KOG0525 236 IR-EGSDITLVAWGTQVHVIMEQACLAKEKLGISCEVIDLKTIIPWDKD--TVEESVQKTGRLLISHEAPVTGGFGAEIA 312 (362)
T ss_pred HH-CCCCEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHH--HHHHHHHHHCEEEEECCCCCCCCCHHHHH
T ss_conf 52-3784389971104689999987667752984699730001575388--89998874161788634775675218889
Q ss_pred --------HCCC---CCEEEECC-CCCCCCHHHHHHHCCC-CHHHHHHHHHHHHC
Q ss_conf --------4579---81898357-7676888899998099-98999999999848
Q gi|254780655|r 631 --------IGSD---GSFIGMQG-FGASGSCDLLYQHFGI-NAIAIVDMVERKLS 672 (673)
Q Consensus 631 --------~~~~---~~~igid~-Fg~sg~~~el~~~~Gl-d~~~I~~~i~~~L~ 672 (673)
+..+ .++.|.|. |+. +.+-|=| |...|.++|++.++
T Consensus 313 stv~ercfl~leapisrvcg~dtpfp~------vfepfy~ptk~ki~daik~~vn 361 (362)
T KOG0525 313 STVQERCFLNLEAPISRVCGLDTPFPH------VFEPFYMPTKNKILDAIKKTVN 361 (362)
T ss_pred HHHHHHHHHHCCCCHHHHCCCCCCCCC------CCCCCCCCCHHHHHHHHHHHCC
T ss_conf 999998876045736664068998852------3456326727689999997616
No 48
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.47 E-value=3.2e-13 Score=114.74 Aligned_cols=145 Identities=24% Similarity=0.317 Sum_probs=106.2
Q ss_pred CCEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 87799856520189999999707688998898640003887988988889987306888631479999999999998534
Q gi|254780655|r 72 RDRFVLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLRE 151 (673)
Q Consensus 72 rDr~v~s~GH~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~ 151 (673)
.+.++.|.|+.....+..+.. .+| .......+.|++|.|++.|+|.++|.+
T Consensus 13 ~~ivv~d~G~~~~~~~~~~~~----------------------~~~---~~~~~~~~~g~mG~~~p~AiGa~~a~p---- 63 (168)
T cd00568 13 DAIVVNDAGNSAYWAYRYLPL----------------------RRG---RRFLTSTGFGAMGYGLPAAIGAALAAP---- 63 (168)
T ss_pred CCEEEECCHHHHHHHHHHCCC----------------------CCC---CEEECCCCCCHHHHHHHHHHHHHHHCC----
T ss_conf 969998752769999997562----------------------899---959828987537779999999998789----
Q ss_pred HCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC-----------CCCCCCCHHHHHHH
Q ss_conf 2688767845999843621143445578876522022330699962763223223-----------55678217998864
Q gi|254780655|r 152 EFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPI-----------SLADSTDQYARFRA 220 (673)
Q Consensus 152 ~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~-----------~~~~~~~~~~~~~a 220 (673)
+++|+|++|||+++. ....+..|.+++++-+++|+||+.+.+-... ......|..+..++
T Consensus 64 -------~~~vv~i~GDG~f~~--~~~el~ta~~~~l~i~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~ 134 (168)
T cd00568 64 -------DRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDFAALAEA 134 (168)
T ss_pred -------CCEEEEEECCCCCEE--CCHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf -------983999977974211--31766456531884269999776136779999850289876565888877899997
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf 144444444440678888888751102210222013
Q gi|254780655|r 221 SGWNTLSVNGHDHHAITSTLRKAQLSDKPTMIACET 256 (673)
Q Consensus 221 ~Gw~~~~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T 256 (673)
+|+++..|+ +.+++..|+++|...++|++|+++|
T Consensus 135 ~G~~~~~v~--~~~el~~al~~a~~~~~p~li~V~t 168 (168)
T cd00568 135 YGAKGVRVE--DPEDLEAALAEALAAGGPALIEVKT 168 (168)
T ss_pred CCCEEEEEC--CHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 498699989--9999999999998389978999989
No 49
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=99.38 E-value=2e-10 Score=94.52 Aligned_cols=105 Identities=16% Similarity=0.149 Sum_probs=77.2
Q ss_pred EECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCCCCCEEEEECCCCHHHHHHHH--
Q ss_conf 856997299995268899999999999973994399857465810008688999643679779997286027899984--
Q gi|254780655|r 554 ISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIEAGLRQGWDAFI-- 631 (673)
Q Consensus 554 ~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE~g~~~g~~~~~-- 631 (673)
...++.|+.||++|+....+.+|.+.|+++|+++.++.++++.||-+ +.+.+++.+.+.++.+|...+. +...+
T Consensus 269 ~~~edAdi~IV~~GS~~~~~~eAvd~Lr~~G~kvg~l~ir~l~PfP~---~~i~~~l~~~k~ViVvE~N~GQ-l~~~i~~ 344 (377)
T PRK08659 269 YMLEDAEVVVVAYGSVARSARRAVKEAREEGIKVGLFRLITVWPFPE---EAIRELAKKVKAIVVPEMNLGQ-MSLEVER 344 (377)
T ss_pred ECCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCH---HHHHHHHHCCCEEEEECCCCHH-HHHHHHH
T ss_conf 24899989999968557899999999996498688999722069998---9999998569989998077568-9999999
Q ss_pred --CCCCCEEEECCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf --57981898357767688889999809998999999999848
Q gi|254780655|r 632 --GSDGSFIGMQGFGASGSCDLLYQHFGINAIAIVDMVERKLS 672 (673)
Q Consensus 632 --~~~~~~igid~Fg~sg~~~el~~~~Gld~~~I~~~i~~~L~ 672 (673)
........|.+| .|-+ ++++.|+++|+++.+
T Consensus 345 ~~~~~~~~~~i~k~--~G~p--------~~~~eI~e~i~~~~~ 377 (377)
T PRK08659 345 VVKGRAKVKGINKI--GGEL--------ITPEEILEKIKEVAS 377 (377)
T ss_pred HHCCCCCEEEEEEE--CCCC--------CCHHHHHHHHHHHHC
T ss_conf 72899864688325--8981--------799999999998639
No 50
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=99.29 E-value=2.9e-10 Score=93.34 Aligned_cols=233 Identities=18% Similarity=0.139 Sum_probs=127.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCEEE-CCCCCCCCCCCCCHHHHCCCCCHHH-----
Q ss_conf 2002356787998728876220010035553001245411110000130-2454333333331010002221011-----
Q gi|254780655|r 420 REHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHV-LTHDSIGLGEDGPTHQPVEHLAALR----- 493 (673)
Q Consensus 420 aE~~~~~~aaGla~~~g~~p~~~tf~~F~~~~~~~ir~~al~~~~v~~v-~th~gi~~G~DGpTHq~iedia~lr----- 493 (673)
.|.++.+++.|.++ .|.+.+.+|-+.=+.+|.+++-+++..++|++++ ..++|.++|- ||+..-.|+...+
T Consensus 55 ~E~aA~~~aiGAs~-aGaRa~TaTSg~Gl~lm~E~l~~a~~~e~P~Vi~~~~R~gPstGl--pt~~~q~Dl~~~~~~~hG 131 (375)
T PRK09627 55 DEISGISVALGASM-SGVKSMTASSGPGISLKAEQIGLGFMAEIPLVIVNVMRGGPSTGL--PTRVAQGDVNQAKNPTHG 131 (375)
T ss_pred CHHHHHHHHHHHHH-HCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCC--CCCCCCCCHHHHHCCCCC
T ss_conf 68999999999997-498257622775488888898899863798699998758887688--663243408886337787
Q ss_pred HHCCCCEEEECCHHHHHHHHHHHHCC---CCCCEEEEEC------CCC--CCCCCC----------------CC---C--
Q ss_conf 10122112112012457777652025---6783499952------444--433456----------------65---5--
Q gi|254780655|r 494 AIPDLLVLRPADSIETLECWQVALKE---KNRPSVLSLS------RQN--LPFLRT----------------QY---E-- 541 (673)
Q Consensus 494 ~iPnl~v~~P~d~~E~~~~~~~al~~---~~gP~~ir~~------R~~--~p~~~~----------------~~---~-- 541 (673)
-.|. .|+.|+|..|+..+...|++- -..|+.+++. ++. +|.... .+ .
T Consensus 132 d~~~-ivl~p~s~qEa~d~t~~Af~lAE~~~~PVivl~D~~lsh~~~~v~~p~~~~v~~~~~~~~~~~~~~~~~~py~~~ 210 (375)
T PRK09627 132 DFKS-IALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDETVGHMYGKAVIPDLEEVEKMIINRKEFEGDKKDYKPYGVA 210 (375)
T ss_pred CCCC-EEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCEECCCHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 6340-677467899999999999999998689889971331002213322699576334556643357885566366789
Q ss_pred CCC--CCC---CC------------------------------------------CEEEEECCCCCEEEEECCHHHHHHH
Q ss_conf 322--123---47------------------------------------------3799856997299995268899999
Q gi|254780655|r 542 SNN--LCA---LG------------------------------------------AYDYISTPNAQVTIFSSGSELKIAV 574 (673)
Q Consensus 542 ~~~--~~~---~G------------------------------------------~~~~~~~~~~dv~iia~G~~v~~al 574 (673)
.+. ... .| .++..+.++.|+.||++|+....+.
T Consensus 211 ~~~p~~~~p~~~~~~~~~~g~eh~~~g~~~e~~~~~~~~~~r~~~k~~~~~~~~~~~e~y~~edAe~~iV~~GSt~~~~~ 290 (375)
T PRK09627 211 QDEPAVLNPFFKGYRYHVTGLHHGPIGFPTEDGKIVGKLIDRLFNKIESHQDEIEEYEEYMLDDAEILIIAYGSVSLSAK 290 (375)
T ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCHHHHH
T ss_conf 99986458988761799435332555786669999999999999999987653364200268998789999564378999
Q ss_pred HHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCC-C--CEEEECCCCCCCCHHH
Q ss_conf 999999973994399857465810008688999643679779997286027899984579-8--1898357767688889
Q gi|254780655|r 575 EACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIEAGLRQGWDAFIGSD-G--SFIGMQGFGASGSCDL 651 (673)
Q Consensus 575 ~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE~g~~~g~~~~~~~~-~--~~igid~Fg~sg~~~e 651 (673)
+|.+.|+++|+++.++.++++.||-+ ..+.+.+.+.+.++.+|.-.+. +.+.+... + ....+..| .|.+
T Consensus 291 eAv~~Lr~~G~kvg~l~~~~l~PfP~---~~i~e~l~~~k~v~VvE~N~Gq-~~~~i~~~~~~~~~~~i~k~--~G~p-- 362 (375)
T PRK09627 291 EAINRLREEGIKVGLFRPITLWPSPA---KRLKEIGDKFEKILVIELNMGQ-YLEEIERVMQRDDFHFLGKA--NGRP-- 362 (375)
T ss_pred HHHHHHHHCCCEEEEEEEEEECCCCH---HHHHHHHHCCCEEEEEECCCHH-HHHHHHHHHCCCCCCEEEEE--CCCC--
T ss_conf 99999997499053797524579998---9999999579989998078159-99999997389875157006--9985--
Q ss_pred HHHHCCCCHHHHHHHHHHH
Q ss_conf 9998099989999999998
Q gi|254780655|r 652 LYQHFGINAIAIVDMVERK 670 (673)
Q Consensus 652 l~~~~Gld~~~I~~~i~~~ 670 (673)
++++.|+++|+++
T Consensus 363 ------f~~~ei~~~i~ei 375 (375)
T PRK09627 363 ------ISPSEIIAKVKEL 375 (375)
T ss_pred ------CCHHHHHHHHHHC
T ss_conf ------7999999999619
No 51
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=99.28 E-value=3.8e-10 Score=92.47 Aligned_cols=237 Identities=14% Similarity=0.137 Sum_probs=153.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCEEE-CCCCCCCCCCCCCHHHHCCCCCH-HHHHC
Q ss_conf 62002356787998728876220010035553001245411110000130-24543333333310100022210-11101
Q gi|254780655|r 419 VREHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHV-LTHDSIGLGEDGPTHQPVEHLAA-LRAIP 496 (673)
Q Consensus 419 IaE~~~~~~aaGla~~~g~~p~~~tf~~F~~~~~~~ir~~al~~~~v~~v-~th~gi~~G~DGpTHq~iedia~-lr~iP 496 (673)
--|..+.+++.|.++ .|.+.+++|-+.=+.+|.+.+..++..++|++++ ..++|-+.| +|+..-.|+.+ ++.-.
T Consensus 54 E~E~aA~~~aiGAs~-aGaRa~TaTSg~Gl~lm~E~l~~aa~~e~P~Viv~~~R~gPs~g---~t~~eQ~D~~~a~~~~g 129 (350)
T PRK07119 54 ESEVAAINMVYGAAA-TGKRVMTSSSSPGISLKQEGISYLAGAELPCVIVNIMRGGPGLG---NIQPSQADYFQAVKGGG 129 (350)
T ss_pred CCHHHHHHHHHHHHH-HCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC---CCCHHHHHHHHHHHCCC
T ss_conf 877999999999997-29964764367428887758899985488749999975888866---74127778999997277
Q ss_pred ----CCCEEEECCHHHHHHHHHHHHCC---CCCCEEEEEC------CCCCCCCC--CCC-----------CCCC-CCC--
Q ss_conf ----22112112012457777652025---6783499952------44443345--665-----------5322-123--
Q gi|254780655|r 497 ----DLLVLRPADSIETLECWQVALKE---KNRPSVLSLS------RQNLPFLR--TQY-----------ESNN-LCA-- 547 (673)
Q Consensus 497 ----nl~v~~P~d~~E~~~~~~~al~~---~~gP~~ir~~------R~~~p~~~--~~~-----------~~~~-~~~-- 547 (673)
.+.|+.|+|.+|+..+...|++- ...|+.++.. ++.+...+ ... ...+ ...
T Consensus 130 hGd~~~ivl~p~s~qEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~e~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 209 (350)
T PRK07119 130 HGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGVLGQMMEPVEFPERASTELPAKDWAVTGTKGREPNIITS 209 (350)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 88653499817999999999999999999988998997355212110120578634566788776527888888875587
Q ss_pred -------------------------CCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCC
Q ss_conf -------------------------4737998569972999952688999999999999739943998574658100086
Q gi|254780655|r 548 -------------------------LGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQS 602 (673)
Q Consensus 548 -------------------------~G~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~ 602 (673)
...++..+.++.|+.||++|+....+.+|.+.|+++|+++.++.++++.||-+
T Consensus 210 ~~~~p~~~~~~~~~~~~k~~~i~~~~~~~e~y~~~da~~~ii~~Gs~~~~~~eav~~lr~~G~kvg~l~~~~~~PfP~-- 287 (350)
T PRK07119 210 LFLDPEELEKHNWRLQAKYAEIEENEVRYEEYNTDDAELVLVAYGTSSRIAKSAVDMAREEGIKVGLFRPITLWPFPE-- 287 (350)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEECEEEECEECCCCH--
T ss_conf 777989999999999999999885224165517888999999956346899999999997598126687651068999--
Q ss_pred HHHHHHHCCCCCEEEEECCCCHHHHHHHHC--CCCCEEEECCCCC-CCCHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 889996436797799972860278999845--7981898357767-688889999809998999999999848
Q gi|254780655|r 603 DSYRAQIIGSSPIKIAIEAGLRQGWDAFIG--SDGSFIGMQGFGA-SGSCDLLYQHFGINAIAIVDMVERKLS 672 (673)
Q Consensus 603 ~~~~~~il~~~~~~vtiE~g~~~g~~~~~~--~~~~~igid~Fg~-sg~~~el~~~~Gld~~~I~~~i~~~L~ 672 (673)
+.+.+.+.+.+.++.+|...+ .+.+.+. ..+. .-+..++. .|-+ ++++-|+++|+++|.
T Consensus 288 -~~i~~~l~~~~~viVvE~n~G-ql~~~v~~~~~~~-~~v~~~~k~~G~~--------~~~~ei~~~i~~~~~ 349 (350)
T PRK07119 288 -KALEKLADKVKGFLSVEMSNG-QMVEDVRLAVNGK-KPVEFYGRMGGMV--------PTPDEILEKIKEIAG 349 (350)
T ss_pred -HHHHHHHHCCCEEEEECCCCC-HHHHHHHHHHCCC-CCEEEECCCCCCC--------CCHHHHHHHHHHHHC
T ss_conf -999999946998999858886-8999999982899-9746853669988--------899999999999857
No 52
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.27 E-value=1e-10 Score=96.70 Aligned_cols=148 Identities=26% Similarity=0.332 Sum_probs=105.5
Q ss_pred CEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77998565201899999997076889988986400038879889888899873068886314799999999999985342
Q gi|254780655|r 73 DRFVLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREE 152 (673)
Q Consensus 73 Dr~v~s~GH~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~ 152 (673)
+.+|-+.|-.|--+|.. |.... +++ .-..+.-|++|++++.|+|.|+|..
T Consensus 16 ~~vvs~~G~~sreL~~~-----------------~~~~~--~~~------~~~fy~~GsMG~a~p~AiG~ala~p----- 65 (188)
T cd03371 16 AAVVSTTGMTSRELFEL-----------------RDRPG--GGH------AQDFLTVGSMGHASQIALGIALARP----- 65 (188)
T ss_pred CEEEECCCCCHHHHHHH-----------------HHCCC--CCC------CCCCEEECHHHHHHHHHHHHHHHCC-----
T ss_conf 98997999885999999-----------------85027--876------6751554312317899999998399-----
Q ss_pred CCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC--CCCCCCCCCCHHHHHHHCCCC-CCCCC
Q ss_conf 688767845999843621143445578876522022330699962763223--223556782179988641444-44444
Q gi|254780655|r 153 FGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISID--GPISLADSTDQYARFRASGWN-TLSVN 229 (673)
Q Consensus 153 ~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~--~~~~~~~~~~~~~~~~a~Gw~-~~~vd 229 (673)
|++|+|+.|||++. |....+..++.+++.|+++|+-||+.--+ +........|..+.-+++|+. +..|
T Consensus 66 ------~r~Vv~l~GDGs~l--M~~geL~T~~~~~~~n~~~vv~nN~~~~s~g~q~t~~~~~df~~iA~a~G~~~~~~v- 136 (188)
T cd03371 66 ------DRKVVCIDGDGAAL--MHMGGLATIGGLAPANLIHIVLNNGAHDSVGGQPTVSFDVSLPAIAKACGYRAVYEV- 136 (188)
T ss_pred ------CCEEEEEECCHHHH--HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEE-
T ss_conf ------98189995733888--885799999972788779999879652234687665789899999998699827997-
Q ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHCCCCCC
Q ss_conf 4406788888887511022102220133455
Q gi|254780655|r 230 GHDHHAITSTLRKAQLSDKPTMIACETVIGF 260 (673)
Q Consensus 230 G~d~~~i~~a~~~ak~~~kP~~I~~~T~kG~ 260 (673)
++.+++.++++++.+.++|++|++++-+|.
T Consensus 137 -~~~~el~~al~~al~~~gP~~ieV~idpg~ 166 (188)
T cd03371 137 -PSLEELVAALAKALAADGPAFIEVKVRPGS 166 (188)
T ss_pred -CCHHHHHHHHHHHHHCCCCEEEEEEECCCC
T ss_conf -899999999999984899999999978999
No 53
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.18 E-value=2.7e-09 Score=86.39 Aligned_cols=100 Identities=16% Similarity=0.133 Sum_probs=49.8
Q ss_pred HHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCCC---C---CCCCHHHHC----CCCCHH
Q ss_conf 6787998728876220010--0355530012454111100001302-4543333---3---333101000----222101
Q gi|254780655|r 426 AAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHVL-THDSIGL---G---EDGPTHQPV----EHLAAL 492 (673)
Q Consensus 426 ~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~~---G---~DGpTHq~i----edia~l 492 (673)
..+.|.++..+ +++++.- ..|+- .-..+..+.-.++|++++. ...+.+. . ..++. .++ -|.+.+
T Consensus 405 paaiGa~lA~~-~~vv~i~GDGsf~m-~~~EL~Ta~r~~lpv~ivV~NN~~yg~i~~~~~~~~~~~-~g~~~~~~Df~~~ 481 (549)
T PRK06457 405 PGAVGASFASD-RQVIAIVGDGGFAM-TMMELITAKKYSRPVKIIIYNNSKLGMIKFEQEVMGYPE-WGVDLYNPDFSKL 481 (549)
T ss_pred HHHHHHHHCCC-CCEEEEECCCHHHC-CHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCC-CCCCCCCCCHHHH
T ss_conf 78999986589-94369966607751-489999999958996899997981168999999727997-7785899899999
Q ss_pred HHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 1101221121120124577776520256783499952
Q gi|254780655|r 493 RAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLS 529 (673)
Q Consensus 493 r~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~ 529 (673)
----|..-++-.+..|+..+++.|++. +||++|-..
T Consensus 482 A~a~G~~g~~V~~~~el~~al~~A~~~-~gP~lIev~ 517 (549)
T PRK06457 482 AESVGIKGFRVEDPNELEEAIEEFLNT-EGPAVLDAV 517 (549)
T ss_pred HHHCCCEEEEECCHHHHHHHHHHHHCC-CCCEEEEEE
T ss_conf 997799799979999999999999818-995999999
No 54
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.17 E-value=3.2e-10 Score=93.06 Aligned_cols=114 Identities=18% Similarity=0.321 Sum_probs=89.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC---
Q ss_conf 88863147999999999999853426887678459998436211434455788765220223306999627632232---
Q gi|254780655|r 128 TTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDG--- 204 (673)
Q Consensus 128 ~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~--- 204 (673)
+.|++|.|+++|+|.++|.. ++.|+|++|||+++ +....+..|..++|+-+++++||+.+.+-.
T Consensus 46 ~~g~mG~glpaAiGa~lA~p-----------~~~Vv~i~GDG~f~--m~~~EL~Ta~~~~lpi~iiV~NN~~~g~i~~~q 112 (177)
T cd02010 46 GLATMGVALPGAIGAKLVYP-----------DRKVVAVSGDGGFM--MNSQELETAVRLKIPLVVLIWNDNGYGLIKWKQ 112 (177)
T ss_pred CCCHHHHHHHHHHHHHHHCC-----------CCEEEEEECCCCCE--ECCHHHHHHHHHCCCEEEEEEECCHHHHHHHHH
T ss_conf 86368889999999998789-----------98599992898611--066688899972884039999898048999999
Q ss_pred -----CC--CCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf -----23--55678217998864144444444440678888888751102210222013
Q gi|254780655|r 205 -----PI--SLADSTDQYARFRASGWNTLSVNGHDHHAITSTLRKAQLSDKPTMIACET 256 (673)
Q Consensus 205 -----~~--~~~~~~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T 256 (673)
+. ......|..+..++||....+| .+.++|..|+++|.+.++|++|.+.+
T Consensus 113 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V--~~~~el~~al~~a~~~~gp~liev~v 169 (177)
T cd02010 113 EKEYGRDSGVDFGNPDFVKYAESFGAKGYRI--ESADDLLPVLERALAADGVHVIDCPV 169 (177)
T ss_pred HHHCCCCCCCCCCCCCHHHHHHHCCCEEEEE--CCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 9863975346189999899999879879998--99999999999998489959999998
No 55
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.12 E-value=2.2e-09 Score=87.02 Aligned_cols=154 Identities=15% Similarity=0.101 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCC-CH-HHHHHHHHHHHHCCCCCCEECCC--HHH
Q ss_conf 888998865543322034555674000266634454320010032576-20-02356787998728876220010--035
Q gi|254780655|r 372 LVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGV-RE-HAMAAAMNGIALHKGLAPYSGTF--MVF 447 (673)
Q Consensus 372 ~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~p~r~i~~GI-aE-~~~~~~aaGla~~~g~~p~~~tf--~~F 447 (673)
.++..+.+.+|+=....+|...+. .. ...+++-..|.+|+..+- .- ......|.|.++...-+|+++.- ..|
T Consensus 385 ~~~~~l~~~lp~d~iv~~D~G~~~-~~---~~~~~~~~~p~~~~~~~~~G~mG~glpaAiGA~lA~p~r~VV~i~GDG~f 460 (579)
T TIGR03457 385 QVLRELEKAMPEDAIVSTDIGNIN-SV---ANSYLRFEKPRKFLAPMSFGNCGYAFPTIIGAKIAAPDRPVVAYAGDGAW 460 (579)
T ss_pred HHHHHHHHHCCCCCEEEECCCCHH-HH---HHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf 999999976899869996781059-99---99986425887165057656654557999999984899828999883787
Q ss_pred HHHHHHHHHHHHHHHCCCEEEC-CCCCCCCC---C----CCC---H-HHHCCCCC-HHHHHCCCCEEEECCHHHHHHHHH
Q ss_conf 5530012454111100001302-45433333---3----331---0-10002221-011101221121120124577776
Q gi|254780655|r 448 SDYSRPAIRLASLMGIRVIHVL-THDSIGLG---E----DGP---T-HQPVEHLA-ALRAIPDLLVLRPADSIETLECWQ 514 (673)
Q Consensus 448 ~~~~~~~ir~~al~~~~v~~v~-th~gi~~G---~----DGp---T-Hq~iedia-~lr~iPnl~v~~P~d~~E~~~~~~ 514 (673)
+- .-.-+--+.-.++|++++. ...|.+.- + ++. | -.+--|.+ +-+++ ++.-++-.++.|+..+++
T Consensus 461 ~m-~~~EL~Ta~r~~lpi~~vV~NN~~yg~~~~~q~~~~~~~~~g~~~~~~~dfa~~A~a~-G~~g~~V~~~~el~~Al~ 538 (579)
T TIGR03457 461 GM-SMNEIMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESELSFAGIADAM-GAKGVVVDKPEDVGPALK 538 (579)
T ss_pred HH-HHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHH
T ss_conf 25-2999999999786928999978644489999998708963102368999989999977-997999799999999999
Q ss_pred HHHCCC--CCCEEE--EECCC
Q ss_conf 520256--783499--95244
Q gi|254780655|r 515 VALKEK--NRPSVL--SLSRQ 531 (673)
Q Consensus 515 ~al~~~--~gP~~i--r~~R~ 531 (673)
.|+... ++|++| +..|.
T Consensus 539 ~Ala~~~~g~P~lIdV~vd~~ 559 (579)
T TIGR03457 539 KAIAAQAEGKTTVIEIVCTRE 559 (579)
T ss_pred HHHHCCCCCCCEEEEEEECCC
T ss_conf 998608999968999996833
No 56
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.10 E-value=4.2e-10 Score=92.21 Aligned_cols=32 Identities=9% Similarity=0.147 Sum_probs=22.0
Q ss_pred CCCEEEECCHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 221121120124577776520256783499952
Q gi|254780655|r 497 DLLVLRPADSIETLECWQVALKEKNRPSVLSLS 529 (673)
Q Consensus 497 nl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~ 529 (673)
|+.=++-.++.|+..+++.|++. ++|+.|-..
T Consensus 520 G~~g~rV~~~~el~~Al~~Al~~-~gP~lIeV~ 551 (594)
T PRK09107 520 GAVGIRCEKPGDLDDAIQEMIDV-DKPVIFDCR 551 (594)
T ss_pred CCEEEEECCHHHHHHHHHHHHHC-CCCEEEEEE
T ss_conf 99799979999999999999828-998899999
No 57
>pfam02775 TPP_enzyme_C Thiamine pyrophosphate enzyme, C-terminal TPP binding domain.
Probab=99.09 E-value=4.2e-10 Score=92.21 Aligned_cols=113 Identities=21% Similarity=0.318 Sum_probs=86.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC-
Q ss_conf 6888631479999999999998534268876784599984362114344557887652202233069996276322322-
Q gi|254780655|r 127 ATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGP- 205 (673)
Q Consensus 127 ~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~- 205 (673)
...|++|.+++.|+|.++|.. |.+|+|++|||+++ +....+..|.+++++-+++++||+.+.+-..
T Consensus 25 ~~~g~mG~~~p~AiGa~~a~p-----------~~~vi~i~GDG~f~--~~~~el~Ta~~~~~~i~~iv~nN~~yg~~~~~ 91 (150)
T pfam02775 25 GGLGTMGYGLPAAIGAKLARP-----------DRPVVAIAGDGGFQ--MNGQELATAVRYNLPITVVVLNNGGYGMTRGQ 91 (150)
T ss_pred CCCCHHHHHHHHHHHHHHHCC-----------CCEEEEEECCCCHH--CCCCHHHHHHHHCCCCCEEEEECCHHHHHHHH
T ss_conf 987323228999999999789-----------98499998897211--13437999998488856899976425888999
Q ss_pred ------------CCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf ------------3556782179988641444444444406788888887511022102220
Q gi|254780655|r 206 ------------ISLADSTDQYARFRASGWNTLSVNGHDHHAITSTLRKAQLSDKPTMIAC 254 (673)
Q Consensus 206 ------------~~~~~~~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak~~~kP~~I~~ 254 (673)
.......|..+..+++|.+..+|+ +.++|.+++++|.+.++|++|++
T Consensus 92 q~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~gP~~ieV 150 (150)
T pfam02775 92 QTPFGGKRYSGPDGDLPPVDFAKLAEAYGAKGARVE--SPEELEEALKEALAHDGPALIDV 150 (150)
T ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 887429974565678888789999998598699978--99999999999982899989959
No 58
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.09 E-value=4.5e-10 Score=91.99 Aligned_cols=114 Identities=24% Similarity=0.410 Sum_probs=88.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC------
Q ss_conf 88631479999999999998534268876784599984362114344557887652202233069996276322------
Q gi|254780655|r 129 TGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISI------ 202 (673)
Q Consensus 129 tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si------ 202 (673)
-|++|.|++.|+|.++|.. ++.|+|++|||+++ +....+..|.+++++-+++++||+.+.+
T Consensus 49 ~g~mG~~lpaAIGa~la~p-----------~r~vv~i~GDG~f~--m~~~EL~Ta~~~~lpi~~iV~NN~~~g~i~~~q~ 115 (186)
T cd02015 49 LGTMGFGLPAAIGAKVARP-----------DKTVICIDGDGSFQ--MNIQELATAAQYNLPVKIVILNNGSLGMVRQWQE 115 (186)
T ss_pred CCHHHHHHHHHHHHHHHCC-----------CCEEEEEECCCHHH--CCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHH
T ss_conf 7356659999999998689-----------98189997670775--0359999999866994799998970688999999
Q ss_pred ---CCCC---CCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCC
Q ss_conf ---3223---556782179988641444444444406788888887511022102220133
Q gi|254780655|r 203 ---DGPI---SLADSTDQYARFRASGWNTLSVNGHDHHAITSTLRKAQLSDKPTMIACETV 257 (673)
Q Consensus 203 ---~~~~---~~~~~~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T~ 257 (673)
.+.. ......|..+..++||++...|+ +.++|.+++++|.+.++|++|.+++-
T Consensus 116 ~~~~~~~~~~~~~~~pd~~~iA~a~G~~~~~v~--~~~el~~al~~a~~~~gP~lieV~id 174 (186)
T cd02015 116 LFYEGRYSHTTLDSNPDFVKLAEAYGIKGLRVE--KPEELEAALKEALASDGPVLLDVLVD 174 (186)
T ss_pred HHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 972897666567888776899997597699978--99999999999984899799999988
No 59
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.09 E-value=4.5e-10 Score=92.01 Aligned_cols=116 Identities=22% Similarity=0.314 Sum_probs=89.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC---
Q ss_conf 68886314799999999999985342688767845999843621143445578876522022330699962763223---
Q gi|254780655|r 127 ATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISID--- 203 (673)
Q Consensus 127 ~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~--- 203 (673)
..-|++|.|++.|+|.++|.. ++.|+|++|||+++ +..-.+..|.+++++-+++++||+.+..-
T Consensus 48 ~~~g~mG~glpaAiGa~la~p-----------~~~Vv~i~GDG~f~--m~~~El~Ta~~~~lpi~~vV~nN~~~g~i~~~ 114 (178)
T cd02014 48 GLLATMGNGLPGAIAAKLAYP-----------DRQVIALSGDGGFA--MLMGDLITAVKYNLPVIVVVFNNSDLGFIKWE 114 (178)
T ss_pred CCCCHHHHHHHHHHHHHHHCC-----------CCEEEEEECCCHHH--CCHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
T ss_conf 886537789999999998489-----------98089997770674--06189998998589813999989615899999
Q ss_pred ----C--CCC-CCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCC
Q ss_conf ----2--235-56782179988641444444444406788888887511022102220133
Q gi|254780655|r 204 ----G--PIS-LADSTDQYARFRASGWNTLSVNGHDHHAITSTLRKAQLSDKPTMIACETV 257 (673)
Q Consensus 204 ----~--~~~-~~~~~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T~ 257 (673)
+ ... .....|..+.-++||.+...|+ +.+++..|+++|.+.++|++|++.+-
T Consensus 115 q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~gP~lieV~vd 173 (178)
T cd02014 115 QEVMGQPEFGVDLPNPDFAKIAEAMGIKGIRVE--DPDELEAALDEALAADGPVVIDVVTD 173 (178)
T ss_pred HHHHCCCCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 998579975253799988999997697079978--99999999999996899799999808
No 60
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.09 E-value=6.3e-10 Score=90.93 Aligned_cols=119 Identities=10% Similarity=0.060 Sum_probs=54.2
Q ss_pred CCHHHCCCCCC-CH-HHHHHHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCCC---CC--
Q ss_conf 20010032576-20-02356787998728876220010--0355530012454111100001302-4543333---33--
Q gi|254780655|r 409 DFSGRYLHYGV-RE-HAMAAAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHVL-THDSIGL---GE-- 478 (673)
Q Consensus 409 ~~p~r~i~~GI-aE-~~~~~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~~---G~-- 478 (673)
..|.+|+.-|- .- .-....+.|.++...=+++++.- ..|. +.-.-+-.+.-.++|++++. ...+.+. .+
T Consensus 425 ~~p~~~i~~~~~G~mG~glpaAiGA~lA~p~r~Vv~i~GDGsf~-mt~qEL~Ta~r~~lpi~iiV~NN~~yg~ir~~q~~ 503 (587)
T PRK06965 425 NEPRRWINSGGLGTMGVGLPYAMGVKMAHPDDDVVCITGEGSIQ-MCIQELSTCLQYDTPVKIISLNNRYLGMVRQWQQI 503 (587)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHH
T ss_conf 68974036876754000568999999858999589998845887-65999999999689928999958723599999998
Q ss_pred --CCCH----HHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf --3310----1000222101110122112112012457777652025678349995
Q gi|254780655|r 479 --DGPT----HQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSL 528 (673)
Q Consensus 479 --DGpT----Hq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~ 528 (673)
+|.. .+++=|.+-+----++.-++-.++.|+..+++.|++.+++|+.|=.
T Consensus 504 ~~~~~~~~~~~~~~Pdf~~lA~a~G~~g~~V~~~~eL~~al~~Al~~~~~p~lidV 559 (587)
T PRK06965 504 EYSKRYSHSYMDALPDFVKLAEAYGHVGMRIEKTSDVEPALKEALRLKDRTVFLDF 559 (587)
T ss_pred HCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 71897665577899899999997799899979999999999999864898099999
No 61
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.08 E-value=6.4e-10 Score=90.86 Aligned_cols=101 Identities=16% Similarity=0.121 Sum_probs=52.0
Q ss_pred HHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCCC-----CCCCCHHHHC----CCCCHHHH
Q ss_conf 787998728876220010--0355530012454111100001302-4543333-----3333101000----22210111
Q gi|254780655|r 427 AMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHVL-THDSIGL-----GEDGPTHQPV----EHLAALRA 494 (673)
Q Consensus 427 ~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~~-----G~DGpTHq~i----edia~lr~ 494 (673)
.|.|.++...-+|+++.- ..|+- .-.-+..+.-.++|++++. ...+++. -.+|-.+.+. -|.+-+--
T Consensus 416 aAIGA~lA~P~r~Vv~i~GDG~f~m-~~~EL~Tavr~~lpv~ivV~NN~~~g~i~~~~~~~g~~~~~~~~~~~Dfa~lA~ 494 (578)
T PRK06546 416 HAIGAQAADPGRQVISMSGDGGLSM-LMGELLTVALHDLPVKVVVFNNSSLGMVKLEMLVDGLPDFGTDVPDVDFAAIAA 494 (578)
T ss_pred HHHHHHHHCCCCCEEEEECCCHHHH-HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 9999998589995899989408887-699999999978897899997843579999998648977557799989999999
Q ss_pred HCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 01221121120124577776520256783499952
Q gi|254780655|r 495 IPDLLVLRPADSIETLECWQVALKEKNRPSVLSLS 529 (673)
Q Consensus 495 iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~ 529 (673)
=-|+.-++-.++.|+..+++.|+.. +||+.|-..
T Consensus 495 a~G~~g~rV~~~~el~~al~~Al~~-~gP~lIeV~ 528 (578)
T PRK06546 495 ALGIHAVRVEDPADIRGALKEAFAH-DGPALVDVV 528 (578)
T ss_pred HCCCEEEEECCHHHHHHHHHHHHHC-CCCEEEEEE
T ss_conf 7799899979999999999999818-996899998
No 62
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.07 E-value=5.9e-10 Score=91.11 Aligned_cols=114 Identities=25% Similarity=0.278 Sum_probs=88.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC---
Q ss_conf 88863147999999999999853426887678459998436211434455788765220223306999627632232---
Q gi|254780655|r 128 TTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDG--- 204 (673)
Q Consensus 128 ~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~--- 204 (673)
..|++|.|+++|+|.++|.. ++.|+|++|||+++ +....+.-|.+++|+-+++++||+.+..-.
T Consensus 46 ~~g~mG~~lpaaiGa~lA~p-----------~~~Vv~i~GDG~f~--m~~~EL~Ta~~~~lpi~~iV~nN~~~~~i~~~q 112 (172)
T cd02004 46 TFGTLGVGLGYAIAAALARP-----------DKRVVLVEGDGAFG--FSGMELETAVRYNLPIVVVVGNNGGWYQGLDGQ 112 (172)
T ss_pred CCCHHHHHHHHHHHHHHHCC-----------CCEEEEEECCCCHH--CCCHHHHHHHHHCCCEEEEEEECCCHHHHHHHH
T ss_conf 87647779999999999789-----------98499997797340--240788899984988599998288328999998
Q ss_pred -------C--CCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf -------2--355678217998864144444444440678888888751102210222013
Q gi|254780655|r 205 -------P--ISLADSTDQYARFRASGWNTLSVNGHDHHAITSTLRKAQLSDKPTMIACET 256 (673)
Q Consensus 205 -------~--~~~~~~~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T 256 (673)
. .......|..+.-++||....+|+ +.+++.+|+++|.+.++|++|.+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~df~~iA~a~G~~~~~v~--~~~el~~al~~a~~~~~p~liev~i 171 (172)
T cd02004 113 QLSYGLGLPVTTLLPDTRYDLVAEAFGGKGELVT--TPEELKPALKRALASGKPALINVII 171 (172)
T ss_pred HHHHCCCCCCEECCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 9872689874321899877899997598289978--9999999999999589969999981
No 63
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.07 E-value=5.7e-10 Score=91.21 Aligned_cols=118 Identities=21% Similarity=0.265 Sum_probs=89.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEE-ECCCCCCCC
Q ss_conf 0688863147999999999999853426887678459998436211434455788765220223306999-627632232
Q gi|254780655|r 126 EATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLW-DNNGISIDG 204 (673)
Q Consensus 126 ~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~-d~N~~si~~ 204 (673)
-...|++|++++.|+|+|++.. ++|+|+-|||++. |...+|..++.++..|+++|+ ||+.+..-|
T Consensus 38 f~~~GsMG~~~~~alG~al~~p------------~kVi~idGDGs~l--M~lg~LaTi~~~~~~nl~~ivlnN~~~~s~G 103 (157)
T cd02001 38 FYMLGSMGLAGSIGLGLALGLS------------RKVIVVDGDGSLL--MNPGVLLTAGEFTPLNLILVVLDNRAYGSTG 103 (157)
T ss_pred EEEECHHHHHHHHHHHHHHCCC------------CCEEEEECCHHHH--HCCCHHHHHHHCCCCCEEEEEEECCCCCCCC
T ss_conf 6865401328899999985389------------9689995755887--5246199998638988799999797532467
Q ss_pred -CCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCC
Q ss_conf -2355678217998864144444444440678888888751102210222013345
Q gi|254780655|r 205 -PISLADSTDQYARFRASGWNTLSVNGHDHHAITSTLRKAQLSDKPTMIACETVIG 259 (673)
Q Consensus 205 -~~~~~~~~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T~kG 259 (673)
........|..+.-+++||.+..++ +.+++..+++++.+.++|++|+++..+|
T Consensus 104 gQ~t~~~~~df~~iA~a~G~~~~~v~--~~~el~~al~~~l~~~GP~fIeV~I~pG 157 (157)
T cd02001 104 GQPTPSSNVNLEAWAAACGYLVLSAP--LLGGLGSEFAGLLATTGPTLLHAPIAPG 157 (157)
T ss_pred CCCCCCCCCCHHHHHHHCCCCEEEEC--CHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 85675446699999998698579958--9999999999998499998999995689
No 64
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.06 E-value=6.7e-10 Score=90.74 Aligned_cols=119 Identities=13% Similarity=0.142 Sum_probs=55.7
Q ss_pred CCHHHCCCCCC-CH-HHHHHHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEE-ECCCCCCCCC------
Q ss_conf 20010032576-20-02356787998728876220010--03555300124541111000013-0245433333------
Q gi|254780655|r 409 DFSGRYLHYGV-RE-HAMAAAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIH-VLTHDSIGLG------ 477 (673)
Q Consensus 409 ~~p~r~i~~GI-aE-~~~~~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~-v~th~gi~~G------ 477 (673)
..|.+|+.-|- .- ......|.|.++...-+++++.- ..|.- .-.-|--+.-.++|+++ |+...|.+.=
T Consensus 435 ~~p~~~l~s~~~GsmG~glPaAiGA~lA~P~r~Vv~i~GDGsf~m-t~qEL~Tavr~~lpi~ivV~NN~~yg~Ir~~Q~~ 513 (612)
T PRK07789 435 EKPRTWLNSGGLGTMGYAVPAAMGAKVGRPDKEVWAIDGDGCFQM-TNQELATCAIEGIPIKVALINNGNLGMVRQWQTL 513 (612)
T ss_pred CCCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH-HHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHH
T ss_conf 389834168765448889999999998689993899985368633-2999999999689948999968830689999998
Q ss_pred -CCCC---H-----HHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf -3331---0-----1000222101110122112112012457777652025678349995
Q gi|254780655|r 478 -EDGP---T-----HQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSL 528 (673)
Q Consensus 478 -~DGp---T-----Hq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~ 528 (673)
.+|. | +..+-|.+.+..--|+.-++=.++.|+..+++.|+..+++|+.|=.
T Consensus 514 ~~~~~~~~~~~~~~~~~~PDf~~lA~a~G~~g~rv~~~~el~~al~~Al~~~d~P~lIdv 573 (612)
T PRK07789 514 FYEERYSNTDLNTGSHRIPDFVKLAEALGCVGLRCEREEDVDAVIEKARAINDRPVVIDF 573 (612)
T ss_pred HCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 708875655467687889899999997798799979999999999999855999589999
No 65
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.06 E-value=8.5e-10 Score=89.99 Aligned_cols=85 Identities=14% Similarity=0.067 Sum_probs=32.2
Q ss_pred ECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHC-CCCCCCCCCCCH-HHHHHHHHHH
Q ss_conf 43621143445578876522022330699962763223223556782179988641-444444444406-7888888875
Q gi|254780655|r 166 VGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRAS-GWNTLSVNGHDH-HAITSTLRKA 243 (673)
Q Consensus 166 iGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~-Gw~~~~vdG~d~-~~i~~a~~~a 243 (673)
.|=|.+ .+.-++..|-..+. +|++|--....+.-+.-......+....++.+ -|.+...+..|+ ..|.+|++.|
T Consensus 72 ~GpG~~---N~~~~i~~A~~~~~-Pll~i~G~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~~~~~~~i~~~i~~A~~~A 147 (521)
T PRK07092 72 SAAGVG---NAMGNLFTAFKNHT-PLVITAGQQARSILPFEPFLAAVDAAELPKPYVKWSIEPARAEDVPAAIARAYHIA 147 (521)
T ss_pred CCCHHH---HHHHHHHHHHHHCC-CEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHH
T ss_conf 783799---89999999986489-98998588764555767430216899887655242654089999999999999999
Q ss_pred HHC-CCCHHHHH
Q ss_conf 110-22102220
Q gi|254780655|r 244 QLS-DKPTMIAC 254 (673)
Q Consensus 244 k~~-~kP~~I~~ 254 (673)
... .+|+.|..
T Consensus 148 ~~~~~GPV~l~i 159 (521)
T PRK07092 148 MQPPRGPVFVSI 159 (521)
T ss_pred HHCCCCCEEEEE
T ss_conf 648998299992
No 66
>PRK08266 hypothetical protein; Provisional
Probab=99.06 E-value=7e-10 Score=90.61 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=15.7
Q ss_pred CCCEEEECCHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 221121120124577776520256783499
Q gi|254780655|r 497 DLLVLRPADSIETLECWQVALKEKNRPSVL 526 (673)
Q Consensus 497 nl~v~~P~d~~E~~~~~~~al~~~~gP~~i 526 (673)
++.-++..+..|+..+++.+++. ++|+.|
T Consensus 489 G~~~~~v~~~~el~~al~~a~~~-~gp~lI 517 (531)
T PRK08266 489 GVPAFRVDSPEELRAALEAALAL-GGPYLI 517 (531)
T ss_pred CCEEEEECCHHHHHHHHHHHHHC-CCCEEE
T ss_conf 99799979999999999999828-991999
No 67
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=99.06 E-value=6.4e-10 Score=90.86 Aligned_cols=103 Identities=15% Similarity=0.065 Sum_probs=53.0
Q ss_pred HHHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCCC---------CC--CCCHHHHCCCCC
Q ss_conf 56787998728876220010--0355530012454111100001302-4543333---------33--331010002221
Q gi|254780655|r 425 AAAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHVL-THDSIGL---------GE--DGPTHQPVEHLA 490 (673)
Q Consensus 425 ~~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~~---------G~--DGpTHq~iedia 490 (673)
...|.|.++...-+++++.- ..|+- .-..+..+.-.++|++++. ...|.+. |. .+.++..--|.+
T Consensus 425 lp~AiGaalA~p~r~Vv~~~GDGsf~m-~~~eL~Ta~r~~lpv~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~df~ 503 (564)
T PRK08155 425 LPAAIGAALANPDRKVLCFSGDGSLMM-NIQEMATAAENQLDVKIILMNNEALGLVHQQQSLFYKQRVFAATYPGKINFM 503 (564)
T ss_pred HHHHHHHHHHCCCCCEEEEECCHHHHH-HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCHH
T ss_conf 789999998489982899974178643-0999999999597908999969985077889887408886554679998999
Q ss_pred HHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 011101221121120124577776520256783499952
Q gi|254780655|r 491 ALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLS 529 (673)
Q Consensus 491 ~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~ 529 (673)
.+----++.-++..+..|+..+++.|++. +||+.|-..
T Consensus 504 ~~A~a~G~~~~~V~~~~el~~al~~al~~-~gp~lIev~ 541 (564)
T PRK08155 504 QIAAGFGLETCDLNNEADPQAALQEAINR-PGPALIHVR 541 (564)
T ss_pred HHHHHCCCEEEEECCHHHHHHHHHHHHCC-CCCEEEEEE
T ss_conf 99997899799969999999999999758-994999999
No 68
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.06 E-value=6.4e-10 Score=90.88 Aligned_cols=151 Identities=14% Similarity=0.024 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCC-CHH-HHHHHHHHHHHCCCCCCEECCC--HHH
Q ss_conf 888998865543322034555674000266634454320010032576-200-2356787998728876220010--035
Q gi|254780655|r 372 LVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGV-REH-AMAAAMNGIALHKGLAPYSGTF--MVF 447 (673)
Q Consensus 372 ~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~p~r~i~~GI-aE~-~~~~~aaGla~~~g~~p~~~tf--~~F 447 (673)
.++..+.+..|+=-....|...+. .. ...+++-..|.+|+.-|- .-- .....|.|.++...-+|+++.- ..|
T Consensus 370 ~~~~~l~~~l~~~~ii~~D~G~~~-~~---~~~~~~~~~p~~~~~~~~~G~mG~~lpaAiGa~lA~p~r~vv~i~GDG~f 445 (560)
T PRK08527 370 WVIERCAKLLGDDAIITTDVGQHQ-MW---VAQFYPFNRPRQLATSGGLGTMGYGLPAALGAKLAVPEKVVINFTGDGSI 445 (560)
T ss_pred HHHHHHHHHCCCCCEEEECCCCHH-HH---HHHHCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf 999999976799848995587226-88---98733357887575478866778713899998874899968999781798
Q ss_pred HHHHHHHHHHHHHHHCCCEEEC-CCCCCCC---CC---CCCHHHH-----CCCCCHHHHHCCCCEEEECCHHHHHHHHHH
Q ss_conf 5530012454111100001302-4543333---33---3310100-----022210111012211211201245777765
Q gi|254780655|r 448 SDYSRPAIRLASLMGIRVIHVL-THDSIGL---GE---DGPTHQP-----VEHLAALRAIPDLLVLRPADSIETLECWQV 515 (673)
Q Consensus 448 ~~~~~~~ir~~al~~~~v~~v~-th~gi~~---G~---DGpTHq~-----iedia~lr~iPnl~v~~P~d~~E~~~~~~~ 515 (673)
+- .-..+..+...++|++++. ..++.+. .+ -|..+.+ --|.+.+-.--|+.-++..+..|+..+++.
T Consensus 446 ~m-~~~EL~Ta~r~~lpv~ivV~NN~~~g~i~~~q~~~~~~~~~~~d~~~~pdf~~~A~a~G~~g~~V~~~~el~~Al~~ 524 (560)
T PRK08527 446 LM-NIQELMTAVEYGIPVINIILNNNFLGMVRQWQTFFYEERYSQTDLSTQPDFVKLAEGFGGIGFRVTTKEEFDKALKQ 524 (560)
T ss_pred HH-HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHH
T ss_conf 66-59999999996889589999699518999999986188877678889989999999789989996999999999999
Q ss_pred HHCCCCCCEEEEE
Q ss_conf 2025678349995
Q gi|254780655|r 516 ALKEKNRPSVLSL 528 (673)
Q Consensus 516 al~~~~gP~~ir~ 528 (673)
|+++ ++|++|=.
T Consensus 525 a~~~-~~p~lIeV 536 (560)
T PRK08527 525 ALKS-DKVSLIDV 536 (560)
T ss_pred HHHC-CCCEEEEE
T ss_conf 9818-99399999
No 69
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.06 E-value=7.4e-10 Score=90.41 Aligned_cols=120 Identities=16% Similarity=0.065 Sum_probs=57.9
Q ss_pred CCCCHHHCCCCCCCHHHH---HHHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCCC---C
Q ss_conf 432001003257620023---56787998728876220010--0355530012454111100001302-4543333---3
Q gi|254780655|r 407 KSDFSGRYLHYGVREHAM---AAAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHVL-THDSIGL---G 477 (673)
Q Consensus 407 ~~~~p~r~i~~GIaE~~~---~~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~~---G 477 (673)
+-+.|.||+.-+- =..| ...|.|.++...-+|+++.- ..|+- .-.-+..+.-.++|++++. ...+++. .
T Consensus 394 ~~~~~~~~~~s~~-~GsmG~glpaAIGa~~A~p~r~Vv~i~GDG~f~m-~~~EL~Ta~r~~lpv~ivV~NN~~~g~i~~~ 471 (574)
T PRK09124 394 KMNGKRRLLGSFN-HGSMANAMPQALGAQAAHPGRQVVSLSGDGGFSM-LMGDFLSLVQLKLPVKIVVFNNSVLGFVAME 471 (574)
T ss_pred CCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHH-HHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
T ss_conf 2458983203787-6652005799999998689994899988628875-4999999999788958999978167899999
Q ss_pred C--CCC----HHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 3--331----010002221011101221121120124577776520256783499952
Q gi|254780655|r 478 E--DGP----THQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLS 529 (673)
Q Consensus 478 ~--DGp----THq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~ 529 (673)
+ .|. |...--|.+.+.---|+.-++-.++.|+..+++.|++. +||+.|-..
T Consensus 472 ~~~~g~~~~g~~l~~pDfa~lA~a~G~~g~rV~~~~el~~al~~Al~~-~gP~lieV~ 528 (574)
T PRK09124 472 MKAGGYLTDGTDLHNPDFAAIANAAGITGIRVEKASELDGALQRAFAH-DGPALVDVV 528 (574)
T ss_pred HHHCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHC-CCCEEEEEE
T ss_conf 996399887785899899999997799799979999999999999818-997999999
No 70
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.06 E-value=6.8e-10 Score=90.67 Aligned_cols=121 Identities=16% Similarity=0.135 Sum_probs=58.1
Q ss_pred CCCCCHHHCCCCC-CCHHH-HHHHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCCC---C
Q ss_conf 5432001003257-62002-356787998728876220010--0355530012454111100001302-4543333---3
Q gi|254780655|r 406 SKSDFSGRYLHYG-VREHA-MAAAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHVL-THDSIGL---G 477 (673)
Q Consensus 406 ~~~~~p~r~i~~G-IaE~~-~~~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~~---G 477 (673)
++-..|.+|+.-+ ..--. ....|.|.++...-+|+++.- ..|+- .-..+.-+.-.++|++++. ...+.+. .
T Consensus 407 ~~~~~p~~~~~~~~~G~mG~glpaAiGA~lA~p~r~Vv~i~GDG~f~m-~~~EL~Ta~r~~lpi~ivV~NN~~yg~ir~~ 485 (570)
T PRK06725 407 YKAKNPRTFLTSGGLGTMGFGFPAAIGAQLAKEEELVICIAGDASFQM-NIQELQTIAENNIPVKVFIINNKFLGMVRQW 485 (570)
T ss_pred HHCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCHHHHH-HHHHHHHHHHHCCCCEEEEEECCCHHHHHHH
T ss_conf 632588726526877764560799999998489981899977527752-2999999999689938999979720599999
Q ss_pred C----CCC---HHHHCCCCCH-HHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 3----331---0100022210-11101221121120124577776520256783499952
Q gi|254780655|r 478 E----DGP---THQPVEHLAA-LRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLS 529 (673)
Q Consensus 478 ~----DGp---THq~iedia~-lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~ 529 (673)
+ ++. |-.+--|.+- -+++ ++.-++-.++.|+..+++.|+++ +||+.|-..
T Consensus 486 q~~~~~~~~~~~~l~~pdf~~~A~a~-G~~g~~V~~~~eL~~Al~~Al~~-~gP~lIev~ 543 (570)
T PRK06725 486 QEMFYENRLSESKIGSPDFVKVAEAY-GVKGLRATNSTEAKQVMLEAFAH-EGPVVVDFC 543 (570)
T ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHCC-CCCEEEEEE
T ss_conf 99862898675748999999999977-99799979999999999999819-998999999
No 71
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=99.05 E-value=6.8e-10 Score=90.67 Aligned_cols=123 Identities=15% Similarity=0.146 Sum_probs=57.9
Q ss_pred CCCCCCHHHCCCC-CCCHHH-HHHHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCCC---
Q ss_conf 4543200100325-762002-356787998728876220010--0355530012454111100001302-4543333---
Q gi|254780655|r 405 ISKSDFSGRYLHY-GVREHA-MAAAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHVL-THDSIGL--- 476 (673)
Q Consensus 405 ~~~~~~p~r~i~~-GIaE~~-~~~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~~--- 476 (673)
+++-..|.||+.- |..--. ....+.|.++...=+|+++.- ..|+- .-..+.-+.-.++|++++. ...+.+.
T Consensus 403 ~~~~~~p~~~~~~~g~GsmG~glpaAiGA~lA~pdr~Vv~i~GDGsf~m-~~qEL~Tavr~~lpv~ivV~NN~~yg~i~~ 481 (586)
T PRK06276 403 YFQTSAPRSFISSGGLGTMGFGFPAAIGAKVARPDANVIAVTGDGGFLM-NSQELATIAEYDIPVIVVIFDNRTLGMVYQ 481 (586)
T ss_pred HHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCHHHHH-HHHHHHHHHHHCCCCEEEEEECCCCHHHHH
T ss_conf 4115899838606887775454799999998589996899988568755-099999999978894899997872059999
Q ss_pred CC----C---CCHHHH-CCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 33----3---310100-02221011101221121120124577776520256783499952
Q gi|254780655|r 477 GE----D---GPTHQP-VEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLS 529 (673)
Q Consensus 477 G~----D---GpTHq~-iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~ 529 (673)
.+ + ..++.. .-|.+-+-.--|+.=++-.++.|+..+++.|++. +||+.|-..
T Consensus 482 ~q~~~~~~~~~~~~~~~~pDf~~lA~a~G~~g~rV~~~~el~~Al~~A~~~-~gP~lIeV~ 541 (586)
T PRK06276 482 WQNLYYGKRQSAVHLGETPDFVKLAESYGVDALRIEKPGEINEALKTAINS-GEPYLLDII 541 (586)
T ss_pred HHHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHC-CCCEEEEEE
T ss_conf 999862886665667999999999997799799979999999999999808-997899999
No 72
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.05 E-value=8.5e-10 Score=89.98 Aligned_cols=32 Identities=13% Similarity=0.087 Sum_probs=22.6
Q ss_pred CCCEEEECCHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 221121120124577776520256783499952
Q gi|254780655|r 497 DLLVLRPADSIETLECWQVALKEKNRPSVLSLS 529 (673)
Q Consensus 497 nl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~ 529 (673)
|+.-++..+..|+..+++.++++ ++|+.|-..
T Consensus 492 G~~g~rV~~~~el~~al~~al~~-~~P~lIeV~ 523 (548)
T PRK08978 492 GIPGQTITRKDQVEAALDTLLNS-EGPYLLHVS 523 (548)
T ss_pred CCEEEEECCHHHHHHHHHHHHHC-CCCEEEEEE
T ss_conf 99799969999999999999818-996999999
No 73
>PRK05858 hypothetical protein; Provisional
Probab=99.05 E-value=8.5e-10 Score=89.99 Aligned_cols=31 Identities=16% Similarity=-0.020 Sum_probs=19.3
Q ss_pred CCCEEEECCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 22112112012457777652025678349995
Q gi|254780655|r 497 DLLVLRPADSIETLECWQVALKEKNRPSVLSL 528 (673)
Q Consensus 497 nl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~ 528 (673)
+..-++..+..|+..+++.|++. ++|++|-.
T Consensus 498 G~~g~~V~~~~eL~~al~~A~~~-~~P~lIeV 528 (543)
T PRK05858 498 GGHGELVAVPAELRPALERAFAS-GLPYVVNV 528 (543)
T ss_pred CCEEEEECCHHHHHHHHHHHHHC-CCCEEEEE
T ss_conf 99799979999999999999838-99099999
No 74
>PRK07064 hypothetical protein; Provisional
Probab=99.05 E-value=1.3e-09 Score=88.65 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=19.8
Q ss_pred CCCEEEECCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 22112112012457777652025678349995
Q gi|254780655|r 497 DLLVLRPADSIETLECWQVALKEKNRPSVLSL 528 (673)
Q Consensus 497 nl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~ 528 (673)
+..-++-.+..|+..+++.|+.. +||++|-.
T Consensus 495 G~~g~rV~~~~eL~~al~~A~~~-~gP~vIeV 525 (544)
T PRK07064 495 GLPHWRVTSADDFEAVLREALAK-EGPVLVEV 525 (544)
T ss_pred CCEEEEECCHHHHHHHHHHHHHC-CCCEEEEE
T ss_conf 99799979999999999999828-99589999
No 75
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.04 E-value=7.1e-10 Score=90.54 Aligned_cols=121 Identities=14% Similarity=0.121 Sum_probs=53.1
Q ss_pred CCCCHHHCCCCCC-CH-HHHHHHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEE-CCCCCCCC---CC
Q ss_conf 4320010032576-20-02356787998728876220010--035553001245411110000130-24543333---33
Q gi|254780655|r 407 KSDFSGRYLHYGV-RE-HAMAAAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHV-LTHDSIGL---GE 478 (673)
Q Consensus 407 ~~~~p~r~i~~GI-aE-~~~~~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v-~th~gi~~---G~ 478 (673)
+-..|.||+..|- .- ......|.|.++...-+|+++.- ..|.- .-.-+..+.-.++|++++ +...+.+. .+
T Consensus 409 ~~~~p~~~~~~~~~G~mG~glpaAiGA~lA~p~r~Vv~i~GDG~f~m-t~qEL~Ta~r~~lpv~ivV~NN~~yg~ir~~q 487 (574)
T PRK06466 409 KFNKPNRWINSGGLGTMGFGLPAAMGVKLAFPDQDVVCVTGEGSIQM-NIQELSTCLQYGLPVKIINLNNGALGMVRQWQ 487 (574)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECHHHHHH-HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH
T ss_conf 66789842468888642333299999998589983899975069876-59999999995999589999799516999999
Q ss_pred ----CCCH----HHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf ----3310----1000222101110122112112012457777652025678349995
Q gi|254780655|r 479 ----DGPT----HQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSL 528 (673)
Q Consensus 479 ----DGpT----Hq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~ 528 (673)
+|.. -+..=|.+-+-.--|+.-++-.+..|+..+++.|+..+++|+.|=.
T Consensus 488 ~~~~~~~~~~~~~~~~pdf~~lA~a~G~~g~rv~~~~el~~al~~al~~~~~p~lIeV 545 (574)
T PRK06466 488 DMNYEGRHSHSYMESLPDFVKLAEAYGHVGIRITDLKDLKPKLEEAFAMKDRLVFIDI 545 (574)
T ss_pred HHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 9752886665566899999999997798799979999999999999852599299999
No 76
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.04 E-value=6.2e-10 Score=90.98 Aligned_cols=119 Identities=16% Similarity=0.161 Sum_probs=56.0
Q ss_pred CCCCHHHCCCCCCCHHHH---HHHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCCC----
Q ss_conf 432001003257620023---56787998728876220010--0355530012454111100001302-4543333----
Q gi|254780655|r 407 KSDFSGRYLHYGVREHAM---AAAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHVL-THDSIGL---- 476 (673)
Q Consensus 407 ~~~~p~r~i~~GIaE~~~---~~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~~---- 476 (673)
+-..|.+|+..|- =..| ...|.|.++...-+|+++.- ..|+ +.-..+-.+.-.++|++++. ...+.+.
T Consensus 410 ~~~~~~~~~~~~~-~G~mG~glpaAiGA~lA~p~r~Vv~i~GDG~f~-m~~qEL~Ta~r~~lpv~ivV~NN~~yg~ir~~ 487 (571)
T PRK07710 410 PLKTPDKWVTSGG-LGTMGFGLPAAIGAQIAKPDELVVAIVGDAGFQ-MTLQELSVLKEHSLPVKVFILNNEALGMVRQW 487 (571)
T ss_pred CCCCCCEEEECCC-CCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHH-CCHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
T ss_conf 4678962420688-776566408999999738998389997780564-36999999999599938999978714899999
Q ss_pred ---CCCCCH-HHHC---CCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf ---333310-1000---222101110122112112012457777652025678349995
Q gi|254780655|r 477 ---GEDGPT-HQPV---EHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSL 528 (673)
Q Consensus 477 ---G~DGpT-Hq~i---edia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~ 528 (673)
..++.. +..+ -|.+.+.---|+.-++-.++.|+..+++.|++. ++|+.|=.
T Consensus 488 q~~~~~~~~~~~~~~~~pdf~~~A~a~G~~g~~V~~~~el~~Al~~Al~~-~gP~lIeV 545 (571)
T PRK07710 488 QEEFYNQRYSHSLLSCQPDFVALAEAYGIKGVRIDDPLEAKEQLQHAITL-QEPVVIDC 545 (571)
T ss_pred HHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHCC-CCCEEEEE
T ss_conf 99862887776667899999999997799899979999999999999818-99699999
No 77
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.04 E-value=3e-09 Score=86.06 Aligned_cols=113 Identities=19% Similarity=0.147 Sum_probs=60.5
Q ss_pred CHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECCC--HHHHHHHHHHHH-HHHHHHCCCEEE----CCCCCCCCCCCCCH
Q ss_conf 00100325762002356787998728876220010--035553001245-411110000130----24543333333310
Q gi|254780655|r 410 FSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTF--MVFSDYSRPAIR-LASLMGIRVIHV----LTHDSIGLGEDGPT 482 (673)
Q Consensus 410 ~p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir-~~al~~~~v~~v----~th~gi~~G~DGpT 482 (673)
++..|+-+|=.= |+.+++.|+|+...-+.|++.= ..++-.+ ..+- .+.....+.+++ ..|++.+ | =||
T Consensus 213 ~~~~F~~vG~MG-~as~ialG~al~~~~~~Vi~lDGDGs~LMh~-Gslati~~~~~~Nl~hivlnN~~h~SvG-g--QpT 287 (361)
T TIGR03297 213 HARDFLTVGSMG-HASQIALGLALARPDQRVVCLDGDGAALMHM-GGLATIGTQGPANLIHVLFNNGAHDSVG-G--QPT 287 (361)
T ss_pred CCCCEEECCCCC-HHHHHHHHHHHHCCCCEEEEEECCHHHHHCC-CHHHHHHHCCCCCEEEEEEECCCCCCCC-C--CCC
T ss_conf 765357348851-4769999998628897089990868998544-0687887438874799998288432558-9--677
Q ss_pred HHHCCCCCHHHHHCCC-CEEEECCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 1000222101110122-112112012457777652025678349995
Q gi|254780655|r 483 HQPVEHLAALRAIPDL-LVLRPADSIETLECWQVALKEKNRPSVLSL 528 (673)
Q Consensus 483 Hq~iedia~lr~iPnl-~v~~P~d~~E~~~~~~~al~~~~gP~~ir~ 528 (673)
+-.--|+..+..--+. .++.=.+..|+..++..+++. +||+.|..
T Consensus 288 ~~~~idf~~iA~a~Gy~~~~~v~~~~~l~~~l~~~~~~-~Gp~fi~v 333 (361)
T TIGR03297 288 VSQHLDFAQIAKACGYAKVYEVSTLEELETALTAASSA-NGPRLIEV 333 (361)
T ss_pred CCCCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHC-CCCEEEEE
T ss_conf 77787999999975997499977999999999999838-99989999
No 78
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.04 E-value=7.3e-10 Score=90.45 Aligned_cols=152 Identities=16% Similarity=0.133 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC-CCHH-HHHHHHHHHHHCCCCCCEECCC--HHH
Q ss_conf 88899886554332203455567400026663445432001003257-6200-2356787998728876220010--035
Q gi|254780655|r 372 LVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYG-VREH-AMAAAMNGIALHKGLAPYSGTF--MVF 447 (673)
Q Consensus 372 ~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~p~r~i~~G-IaE~-~~~~~aaGla~~~g~~p~~~tf--~~F 447 (673)
.++..+.+..|+=....+|..... . + ...+++-..|.+|+..+ ..=- .....|.|.++...-++++++- ..|
T Consensus 376 ~~~~~l~~~~p~d~iv~~d~G~~~-~-~--~~~~~~~~~p~~~~~~~g~G~mG~glpaAiGA~lA~pdr~Vv~i~GDG~f 451 (572)
T PRK06456 376 KILKTIRNSIPRDAIVTTGVGQHQ-M-W--AEVFWEVLEPRTFLSSTGMGTMGFGLPAAMGAKLARPDKVVVDLDGDGSF 451 (572)
T ss_pred HHHHHHHHHCCCCCEEEECCCCCH-H-H--HHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCHHH
T ss_conf 999999985799987997886217-8-9--99974047987044067666656520899999983899829999875586
Q ss_pred HHHHHHHHHHHHHHHCCCEEEC-CCCCCCC---CCC---C-C---HHH-HCCCCCHHHHHCCCCEEEECCHHHHHHHHHH
Q ss_conf 5530012454111100001302-4543333---333---3-1---010-0022210111012211211201245777765
Q gi|254780655|r 448 SDYSRPAIRLASLMGIRVIHVL-THDSIGL---GED---G-P---THQ-PVEHLAALRAIPDLLVLRPADSIETLECWQV 515 (673)
Q Consensus 448 ~~~~~~~ir~~al~~~~v~~v~-th~gi~~---G~D---G-p---THq-~iedia~lr~iPnl~v~~P~d~~E~~~~~~~ 515 (673)
+- .-..+..+.-.++|++++. ...+.+. .++ | . ++- +.-|.+-+----|+.-++-.+..|+..+++.
T Consensus 452 ~m-~~qEL~Ta~r~~lpv~ivV~NN~~yg~ir~~q~~~~~~~~~~~~~~~~pdfa~iA~a~G~~g~~V~~~~el~~al~~ 530 (572)
T PRK06456 452 LM-TGNNLATAVDEHIPIISVIFDNRTLGLVRQVQDLFFGRRIVGVDYGPSPDFVKLAEAFGALGFNATTYEEIEKSIKT 530 (572)
T ss_pred HC-CHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHH
T ss_conf 30-39999999995899389999687037999999986288644576799999999999789979996999999999999
Q ss_pred HHCCCCCCEEEEEC
Q ss_conf 20256783499952
Q gi|254780655|r 516 ALKEKNRPSVLSLS 529 (673)
Q Consensus 516 al~~~~gP~~ir~~ 529 (673)
|++. ++|+.|-..
T Consensus 531 a~~~-~gP~lIeV~ 543 (572)
T PRK06456 531 AIKE-NIPAVIRVP 543 (572)
T ss_pred HHHC-CCCEEEEEE
T ss_conf 9828-996999999
No 79
>PRK07524 hypothetical protein; Provisional
Probab=99.04 E-value=8.3e-10 Score=90.04 Aligned_cols=31 Identities=13% Similarity=0.072 Sum_probs=15.0
Q ss_pred CCEEEEECCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 72999952688999999999999739943998
Q gi|254780655|r 559 AQVTIFSSGSELKIAVEACEILSSRNISTRVV 590 (673)
Q Consensus 559 ~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi 590 (673)
+-+.|++=|+....+-+- ....++++.+.+|
T Consensus 427 ~vi~i~GDGsf~m~~~eL-~Ta~r~~lpi~ii 457 (534)
T PRK07524 427 PVVCLVGDGGLQFTLPEL-ASAVEADLPLVVL 457 (534)
T ss_pred CEEEEECCHHHHHHHHHH-HHHHHHCCCCEEE
T ss_conf 789998726875419999-9999978591899
No 80
>PRK08611 pyruvate oxidase; Provisional
Probab=99.04 E-value=8.6e-10 Score=89.93 Aligned_cols=152 Identities=11% Similarity=0.005 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHH---HHHHHHHHHCCCCCCEECCC--H
Q ss_conf 788899886554332203455567400026663445432001003257620023---56787998728876220010--0
Q gi|254780655|r 371 ELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAM---AAAMNGIALHKGLAPYSGTF--M 445 (673)
Q Consensus 371 g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~p~r~i~~GIaE~~~---~~~aaGla~~~g~~p~~~tf--~ 445 (673)
..++..+.+..|+=....+|...++ .. ...+++-..|.+|+--+- =..| ...|.|.++...-+|+++.- .
T Consensus 362 ~~~~~~l~~~lp~d~iv~~D~G~~~-~~---~~~~~~~~~~~~~~~s~~-~G~mG~glpaAiGA~lA~p~r~Vv~i~GDG 436 (576)
T PRK08611 362 ERVMASIQKFAKDDAVLSVDVGTVT-VW---SARYLNLTVNQKFIISSW-LGTMGCGLPGAIAAKIAFPNRQAIAICGDG 436 (576)
T ss_pred HHHHHHHHHHCCCCCEEEEECCCHH-HH---HHHHCCCCCCCEECCCCC-CCCCCCCHHHHHHHHHHCCCCCEEEEECCH
T ss_conf 9999999986799987998276208-99---987501678862203788-777664069999999868999789998343
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEE-CCCCCCCCC-----CCCC----HHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHH
Q ss_conf 35553001245411110000130-245433333-----3331----0100022210111012211211201245777765
Q gi|254780655|r 446 VFSDYSRPAIRLASLMGIRVIHV-LTHDSIGLG-----EDGP----THQPVEHLAALRAIPDLLVLRPADSIETLECWQV 515 (673)
Q Consensus 446 ~F~~~~~~~ir~~al~~~~v~~v-~th~gi~~G-----~DGp----THq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~ 515 (673)
.|+- .-.-+-.+.-.++|++++ +...+.+.- ..|. |.-+--|.+.+----++.-++-.++.|+..+++.
T Consensus 437 sf~m-t~qEL~Tavr~~lpv~ivV~NN~~yg~i~~~q~~~g~~~~~~~l~~~Df~~~A~a~G~~g~rV~~~~el~~Al~~ 515 (576)
T PRK08611 437 GFSM-VMQDFVTAVKYKLPITVVVLNNQQLAFIKYEQQAAGELEYAIDLSDMDYAKFAEACGGKGYTVKSADELDPAFEE 515 (576)
T ss_pred HHHH-HHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHH
T ss_conf 8766-599999999978897899996982189999999737987668489989999999779979997999999999999
Q ss_pred HHCCCCCCEEEEEC
Q ss_conf 20256783499952
Q gi|254780655|r 516 ALKEKNRPSVLSLS 529 (673)
Q Consensus 516 al~~~~gP~~ir~~ 529 (673)
|++. ++|+.|=..
T Consensus 516 Al~~-~~P~lIeV~ 528 (576)
T PRK08611 516 ALAQ-DKPVIIDVY 528 (576)
T ss_pred HHHC-CCCEEEEEE
T ss_conf 9828-997999998
No 81
>PRK12474 hypothetical protein; Provisional
Probab=99.04 E-value=1.2e-09 Score=89.02 Aligned_cols=42 Identities=14% Similarity=0.137 Sum_probs=21.1
Q ss_pred CHHHHHHHCC-CCCCCCCCCCH-HHHHHHHHHHHHC-CCCHHHHH
Q ss_conf 1799886414-44444444406-7888888875110-22102220
Q gi|254780655|r 213 DQYARFRASG-WNTLSVNGHDH-HAITSTLRKAQLS-DKPTMIAC 254 (673)
Q Consensus 213 ~~~~~~~a~G-w~~~~vdG~d~-~~i~~a~~~ak~~-~kP~~I~~ 254 (673)
|+...++.+- |.+..-+..++ +.+.+|++.|+.. ..|++|..
T Consensus 118 d~~~~~~~vtk~~~~v~~~~~i~~~v~~A~~~A~s~~~GPv~l~i 162 (518)
T PRK12474 118 DIDGFARPVSRWVHRSASAGAVDSDVARAVQAAQSAPGGIATLIM 162 (518)
T ss_pred CHHHHHHHHEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 499997644026899777666499999999998549999779996
No 82
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.04 E-value=9.1e-10 Score=89.78 Aligned_cols=31 Identities=13% Similarity=0.073 Sum_probs=21.8
Q ss_pred CCCEEEECCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 22112112012457777652025678349995
Q gi|254780655|r 497 DLLVLRPADSIETLECWQVALKEKNRPSVLSL 528 (673)
Q Consensus 497 nl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~ 528 (673)
|+.=++-.++.|+..+++.|++. ++|+.|=.
T Consensus 518 G~~g~rV~~~~el~~Al~~Al~~-~gP~lIeV 548 (588)
T CHL00099 518 GIKGITIKSRKDLKSKLQRALDY-DGPVLVDC 548 (588)
T ss_pred CCEEEEECCHHHHHHHHHHHHCC-CCCEEEEE
T ss_conf 99899979999999999999829-99789999
No 83
>PRK08322 acetolactate synthase; Reviewed
Probab=99.03 E-value=9.4e-10 Score=89.66 Aligned_cols=31 Identities=16% Similarity=0.074 Sum_probs=17.7
Q ss_pred CCCEEEECCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 22112112012457777652025678349995
Q gi|254780655|r 497 DLLVLRPADSIETLECWQVALKEKNRPSVLSL 528 (673)
Q Consensus 497 nl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~ 528 (673)
|+.-++..+..|+..+++.|++. +||+.|-.
T Consensus 495 G~~~~~v~~~~el~~al~~a~~~-~gp~lIev 525 (547)
T PRK08322 495 GAKGYRVESADDLLPTLEEALAQ-PGVHVIDC 525 (547)
T ss_pred CCEEEEECCHHHHHHHHHHHHHC-CCCEEEEE
T ss_conf 99799969999999999999828-99789999
No 84
>PRK08199 acetolactate synthase 2 catalytic subunit; Validated
Probab=99.03 E-value=1.4e-09 Score=88.44 Aligned_cols=17 Identities=12% Similarity=0.321 Sum_probs=7.1
Q ss_pred HHHHHHHHHHCC-CCHHH
Q ss_conf 888888751102-21022
Q gi|254780655|r 236 ITSTLRKAQLSD-KPTMI 252 (673)
Q Consensus 236 i~~a~~~ak~~~-kP~~I 252 (673)
+.+|++.|.... +|+.|
T Consensus 140 i~~A~~~A~~~~~GPV~l 157 (553)
T PRK08199 140 VARAFHVATSGRPGPVVL 157 (553)
T ss_pred HHHHHHHHHCCCCCCEEE
T ss_conf 999999974289973899
No 85
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.03 E-value=1.1e-09 Score=89.26 Aligned_cols=116 Identities=32% Similarity=0.404 Sum_probs=88.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC----
Q ss_conf 8886314799999999999985342688767845999843621143445578876522022330699962763223----
Q gi|254780655|r 128 TTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISID---- 203 (673)
Q Consensus 128 ~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~---- 203 (673)
+-|++|-|+++|+|.++|.. |+.|+|++|||+++ +..--+.-|.+++|+-+++++||+.+..=
T Consensus 46 g~g~MG~~lPaAiGA~lA~P-----------dr~Vv~i~GDG~f~--m~~~EL~Tavr~~lpv~~vV~NN~~yg~i~~~Q 112 (205)
T cd02003 46 GYSCMGYEIAAGLGAKLAKP-----------DREVYVLVGDGSYL--MLHSEIVTAVQEGLKIIIVLFDNHGFGCINNLQ 112 (205)
T ss_pred CCHHHHHHHHHHHHHHHHCC-----------CCCEEEEECCCCCC--CCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH
T ss_conf 74068899999999998589-----------98289997674111--520489999982995469999899428999999
Q ss_pred -----CCC---------------CCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCC
Q ss_conf -----223---------------5567821799886414444444444067888888875110221022201334
Q gi|254780655|r 204 -----GPI---------------SLADSTDQYARFRASGWNTLSVNGHDHHAITSTLRKAQLSDKPTMIACETVI 258 (673)
Q Consensus 204 -----~~~---------------~~~~~~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T~k 258 (673)
.+. ....+.|..+.-++||-..++|+ +.++|..|+++|.+.++|++|.+++-.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Df~~~A~a~G~~g~~V~--~~~eL~~Al~~Al~~~gP~vIev~vdP 185 (205)
T cd02003 113 ESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVK--TIEELKAALAKAKASDRTTVIVIKTDP 185 (205)
T ss_pred HHHCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 9744676331110145655556777789889999987497089938--889999999999968996999999379
No 86
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.03 E-value=1.2e-09 Score=88.97 Aligned_cols=151 Identities=14% Similarity=0.109 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHH---HHHHHHHHHCCCCCCEECCC--H
Q ss_conf 788899886554332203455567400026663445432001003257620023---56787998728876220010--0
Q gi|254780655|r 371 ELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAM---AAAMNGIALHKGLAPYSGTF--M 445 (673)
Q Consensus 371 g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~p~r~i~~GIaE~~~---~~~aaGla~~~g~~p~~~tf--~ 445 (673)
..++..+.+..|+-+ ..+|.... ... ...+.+ +.|.+|+.-+-- ..| ...|.|.++...-+++++.- .
T Consensus 390 ~~v~~~l~~~~pd~i-v~~D~G~~-~~w---~~~~l~-~~p~~~i~s~g~-GsmG~glPaAiGA~lA~p~r~Vv~i~GDG 462 (615)
T PRK07418 390 QEVLLAVRDLAPDAY-YTTDVGQH-QMW---AAQFLR-NGPRRWISSAGL-GTMGFGMPAAMGVKVALPDEQVICIAGDA 462 (615)
T ss_pred HHHHHHHHHHCCCCE-EEECCCCH-HHH---HHHHHH-CCCCCEECCCCC-CCHHHHHHHHHHHHHHCCCCCEEEEECCH
T ss_conf 999999997588877-99368621-688---998712-278712158787-63257889999999848999689998443
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEC-CCCCCCC--------CCCCCHH----HHCCCCCHHHHHCCCCEEEECCHHHHHHH
Q ss_conf 355530012454111100001302-4543333--------3333101----00022210111012211211201245777
Q gi|254780655|r 446 VFSDYSRPAIRLASLMGIRVIHVL-THDSIGL--------GEDGPTH----QPVEHLAALRAIPDLLVLRPADSIETLEC 512 (673)
Q Consensus 446 ~F~~~~~~~ir~~al~~~~v~~v~-th~gi~~--------G~DGpTH----q~iedia~lr~iPnl~v~~P~d~~E~~~~ 512 (673)
.|.- .-.-+-.+.-.++|++++. ...+.+. ..+.-++ .+.-|.+.+----|+.=++-.+..|+..+
T Consensus 463 sf~m-t~qEL~Ta~r~~Lpv~ivV~NN~~~G~ir~~q~~~~~~~~~~~~~~~~~pDf~~lA~a~G~~g~rV~~~~eL~~A 541 (615)
T PRK07418 463 SFLM-NIQELGTLAQYGIPVKTVIINNGWQGMVRQWQESFYDERYSASNMLPGMPDFVKLAEAFGVKGMLISERDQLKDA 541 (615)
T ss_pred HHHH-HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHH
T ss_conf 8766-499999999968996899997984479999999861887673457789999999999779979997999999999
Q ss_pred HHHHHCCCCCCEEE--EECC
Q ss_conf 76520256783499--9524
Q gi|254780655|r 513 WQVALKEKNRPSVL--SLSR 530 (673)
Q Consensus 513 ~~~al~~~~gP~~i--r~~R 530 (673)
++.|++. +||+.| +..|
T Consensus 542 l~~Al~~-~gP~lidV~vd~ 560 (615)
T PRK07418 542 IAEALAH-DGPVLIDVHVRR 560 (615)
T ss_pred HHHHHHC-CCCEEEEEEECC
T ss_conf 9999808-997899999888
No 87
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.02 E-value=1.2e-09 Score=89.01 Aligned_cols=73 Identities=18% Similarity=0.152 Sum_probs=36.9
Q ss_pred HHHHHHHHCCCEEEC-CCCCCCC---CC----CCCHHHH----CCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCC
Q ss_conf 454111100001302-4543333---33----3310100----0222101110122112112012457777652025678
Q gi|254780655|r 455 IRLASLMGIRVIHVL-THDSIGL---GE----DGPTHQP----VEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNR 522 (673)
Q Consensus 455 ir~~al~~~~v~~v~-th~gi~~---G~----DGpTHq~----iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~g 522 (673)
+..+.-.++|++++. ...+.+. .+ .|...+. .-|.+-+----++.-++=.+..|+..+++.|+..+++
T Consensus 458 L~Tavr~~lpv~ivV~NN~~yg~i~~~q~~~~~g~~~~~~~~~~pDf~~lA~a~G~~g~rV~~~~eL~~al~~Al~~~~~ 537 (574)
T PRK06882 458 LSTAKQYDIPVVIVSLNNRFLGMVKQWQDLIYSGRHSQVYMNSLPDFAKLAEAYGHVGIQIDTPDELEEKLTQAFSIKDK 537 (574)
T ss_pred HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCC
T ss_conf 99999968995899997985429999999860897675567899999999997899799979999999999999855799
Q ss_pred CEEEE
Q ss_conf 34999
Q gi|254780655|r 523 PSVLS 527 (673)
Q Consensus 523 P~~ir 527 (673)
|+.|=
T Consensus 538 p~lid 542 (574)
T PRK06882 538 LVFVD 542 (574)
T ss_pred CEEEE
T ss_conf 09999
No 88
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.02 E-value=8.7e-10 Score=89.89 Aligned_cols=112 Identities=30% Similarity=0.423 Sum_probs=85.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC----
Q ss_conf 8863147999999999999853426887678459998436211434455788765220223306999627632232----
Q gi|254780655|r 129 TGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDG---- 204 (673)
Q Consensus 129 tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~---- 204 (673)
.|++|.|++.|+|.++|.. |+.|+|++|||+++ +....+..|.+++++-+++++||+.+.+-.
T Consensus 48 ~g~mG~~~paAiGa~lA~p-----------~r~vv~i~GDG~f~--m~~~eL~Ta~~~~lpv~iiV~NN~~~g~~~~~~~ 114 (178)
T cd02002 48 GGGLGWGLPAAVGAALANP-----------DRKVVAIIGDGSFM--YTIQALWTAARYGLPVTVVILNNRGYGALRSFLK 114 (178)
T ss_pred CCHHHHHHHHHHHHHHHCC-----------CCEEEEEECCCCCC--CCCHHHEEEHHHCCCEEEEEEECCCHHHHHHHHH
T ss_conf 8537679999999998598-----------98299997897311--5522210001417997999997983089999999
Q ss_pred ------CC-------CCCC-CCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHC
Q ss_conf ------23-------5567-821799886414444444444067888888875110221022201
Q gi|254780655|r 205 ------PI-------SLAD-STDQYARFRASGWNTLSVNGHDHHAITSTLRKAQLSDKPTMIACE 255 (673)
Q Consensus 205 ------~~-------~~~~-~~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak~~~kP~~I~~~ 255 (673)
.. .... ..|..+.-++||.+...| .+.++|..|+++|.+.++|++|++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~p~~d~~~iA~a~G~~~~~v--~~~~el~~al~~a~~~~~p~vIev~ 177 (178)
T cd02002 115 RVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERV--ETPEELDEALREALAEGGPALIEVV 177 (178)
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEE--CCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 97377777665555567789989999999839948997--8999999999999838996899998
No 89
>PRK08617 acetolactate synthase; Reviewed
Probab=99.01 E-value=1.6e-09 Score=88.06 Aligned_cols=30 Identities=23% Similarity=0.184 Sum_probs=14.8
Q ss_pred CCCEEEECCHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 2211211201245777765202567834999
Q gi|254780655|r 497 DLLVLRPADSIETLECWQVALKEKNRPSVLS 527 (673)
Q Consensus 497 nl~v~~P~d~~E~~~~~~~al~~~~gP~~ir 527 (673)
++.-++-.+..|+..++..|+++ +||++|-
T Consensus 503 G~~g~~V~~~~eL~~al~~A~~~-~gP~lIe 532 (552)
T PRK08617 503 GAKGLRVTSPDELEPVLKEALAT-DGPVVID 532 (552)
T ss_pred CCEEEEECCHHHHHHHHHHHHHC-CCCEEEE
T ss_conf 99799979999999999999818-9958999
No 90
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=99.01 E-value=1.1e-09 Score=89.27 Aligned_cols=30 Identities=7% Similarity=0.155 Sum_probs=16.2
Q ss_pred CCCEEEECCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 22112112012457777652025678349995
Q gi|254780655|r 497 DLLVLRPADSIETLECWQVALKEKNRPSVLSL 528 (673)
Q Consensus 497 nl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~ 528 (673)
++.-++=.++.|+..+++ ++.. ++|+.|-.
T Consensus 509 G~~~~rv~~~~eL~~aLe-a~~~-~~P~lIeV 538 (566)
T PRK07282 509 GIKHYKFDNPETLAQDLE-VITE-DVPMLIEV 538 (566)
T ss_pred CCEEEEECCHHHHHHHHH-HHCC-CCCEEEEE
T ss_conf 987999899999999999-8778-99899999
No 91
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.01 E-value=1.4e-09 Score=88.41 Aligned_cols=31 Identities=13% Similarity=0.089 Sum_probs=19.9
Q ss_pred CCCEEEECCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 22112112012457777652025678349995
Q gi|254780655|r 497 DLLVLRPADSIETLECWQVALKEKNRPSVLSL 528 (673)
Q Consensus 497 nl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~ 528 (673)
++.-++-.++.|+..+++.|+++ +||++|-.
T Consensus 530 G~~g~rV~~~~eL~~Al~~A~~~-~gP~lIeV 560 (581)
T PRK06112 530 GCDGVRVEDPASLAQALAAAEAA-PGPFLIEV 560 (581)
T ss_pred CCEEEEECCHHHHHHHHHHHHHC-CCCEEEEE
T ss_conf 98699979999999999999848-99399999
No 92
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.01 E-value=1.1e-09 Score=89.28 Aligned_cols=121 Identities=16% Similarity=0.118 Sum_probs=54.4
Q ss_pred CCCCCHHHCCCC-CCCH-HHHHHHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEECCCC-CCCC----
Q ss_conf 543200100325-7620-02356787998728876220010--0355530012454111100001302454-3333----
Q gi|254780655|r 406 SKSDFSGRYLHY-GVRE-HAMAAAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHVLTHD-SIGL---- 476 (673)
Q Consensus 406 ~~~~~p~r~i~~-GIaE-~~~~~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v~th~-gi~~---- 476 (673)
++-..|.+|+.- |..- ......|.|.++...-+|+++.- ..|+- .-..+-.+.-.++|++++.-.. +.+.
T Consensus 399 ~~~~~p~~~~~~~~~G~mG~glpaAiGA~lA~p~r~Vv~i~GDG~f~m-~~qEL~Ta~r~~lpi~ivV~NN~~~g~i~~~ 477 (562)
T PRK06048 399 FKYKKPRTFITSGGLGTMGYGFPAAIGAKVGRPDKTVIDIAGDGSFQM-NSQELATVVQNDIPVVSVILNNGYLGMVRQW 477 (562)
T ss_pred HHCCCCCCEECCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCHHHHH-HHHHHHHHHHHCCCEEEEEEECCCCHHHHHH
T ss_conf 204688711127877676775089999998589995899986179766-5999999999787929999968840899999
Q ss_pred ---CCCCCHHH----HCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf ---33331010----00222101110122112112012457777652025678349995
Q gi|254780655|r 477 ---GEDGPTHQ----PVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSL 528 (673)
Q Consensus 477 ---G~DGpTHq----~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~ 528 (673)
..++...+ +--|.+.+----++.-++..+..|+..+++.|++. ++|+.|-.
T Consensus 478 q~~~~~~~~~~~~~~~~~df~~lA~a~G~~g~rV~~~~el~~al~~al~~-~gP~lIeV 535 (562)
T PRK06048 478 QELFYDKRYSHTFIKGSVDFVKLAEAYGALGLRAEKPSEVRPAIEEAVES-GRPVVVDF 535 (562)
T ss_pred HHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHC-CCCEEEEE
T ss_conf 99863887675577999999999997899799969999999999999818-99799999
No 93
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=99.01 E-value=1.5e-09 Score=88.27 Aligned_cols=105 Identities=10% Similarity=0.070 Sum_probs=48.8
Q ss_pred HHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCCC--CCCCCHHHHCCCCCH--H----HHH-
Q ss_conf 87998728876220010--0355530012454111100001302-4543333--333310100022210--1----110-
Q gi|254780655|r 428 MNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHVL-THDSIGL--GEDGPTHQPVEHLAA--L----RAI- 495 (673)
Q Consensus 428 aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~~--G~DGpTHq~iedia~--l----r~i- 495 (673)
|.|.++...=+|+++.- ..|+- .-.-+--+.-.++|++++. ...|.+. ...|..+. ..|++. + +.+
T Consensus 413 AIGA~lA~P~r~Vv~i~GDG~f~m-~~~EL~Tavr~~lpi~~vV~NN~~yg~~r~~~~~~~~-~~~~~~~~~~~~a~a~g 490 (539)
T TIGR03393 413 AFGAQTACPNRRVILLIGDGSAQL-TIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQR-YNDIALWNWTHLPQALS 490 (539)
T ss_pred HHHHHHHCCCCCEEEEECCHHHHH-HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCC-CCCCCCCCHHHHHHHCC
T ss_conf 999998398994899984058776-3999999998198968999978823899887447766-67788899789999769
Q ss_pred --CCCCEEEECCHHHHHHHHHHHHCCCCCCEEEE--ECCCCCCC
Q ss_conf --12211211201245777765202567834999--52444433
Q gi|254780655|r 496 --PDLLVLRPADSIETLECWQVALKEKNRPSVLS--LSRQNLPF 535 (673)
Q Consensus 496 --Pnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir--~~R~~~p~ 535 (673)
..+.-++-.|+.|+..+++.|+.. ++|+.|- .++.++|.
T Consensus 491 ~~g~~~~~rV~~~~eL~~al~~a~~~-~~P~lIeV~v~~~~~pp 533 (539)
T TIGR03393 491 LDPQSECWRVSEAEQLADVLEKVAAH-ERLSLIEVVLPKADIPP 533 (539)
T ss_pred CCCCCCEEEECCHHHHHHHHHHHHHC-CCCEEEEEECCCCCCCC
T ss_conf 98862248868999999999999867-99789999857455885
No 94
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=98.99 E-value=2e-09 Score=87.32 Aligned_cols=113 Identities=25% Similarity=0.349 Sum_probs=81.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC--
Q ss_conf 886314799999999999985342688767845999843621143445578876522022330699962763223223--
Q gi|254780655|r 129 TGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPI-- 206 (673)
Q Consensus 129 tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~-- 206 (673)
-|++|.|++.|+|.++|.. |++|+|++|||+++ |..-.+.-|..++|+.+++++||+.+.+....
T Consensus 49 ~g~mG~~lpaAiGa~lA~p-----------~~~Vv~i~GDG~f~--m~~~El~Ta~r~~l~vi~vV~NN~~~~~~r~~~~ 115 (183)
T cd02005 49 WGSIGYSVPAALGAALAAP-----------DRRVILLVGDGSFQ--MTVQELSTMIRYGLNPIIFLINNDGYTIERAIHG 115 (183)
T ss_pred CCHHHHHHHHHHHHHHHCC-----------CCCEEEEECCHHHH--HHHHHHHHHHHHCCCEEEEEEECCCCCEEEEECC
T ss_conf 5037789999999999789-----------98479995673676--2088999999829981999998994325575126
Q ss_pred -----CCCCCCCHHHHHHHCCC----CCCCCCCCCHHHHHHHHHHHH-HCCCCHHHHHCC
Q ss_conf -----55678217998864144----444444440678888888751-102210222013
Q gi|254780655|r 207 -----SLADSTDQYARFRASGW----NTLSVNGHDHHAITSTLRKAQ-LSDKPTMIACET 256 (673)
Q Consensus 207 -----~~~~~~~~~~~~~a~Gw----~~~~vdG~d~~~i~~a~~~ak-~~~kP~~I~~~T 256 (673)
......|..+..+++|- ..++| ++.++|..|+++|. ..++|++|.+.+
T Consensus 116 ~~~~~~~~~~~df~~~A~a~G~~~g~~g~rV--~~~~el~~al~~Al~~~~~P~liev~v 173 (183)
T cd02005 116 PEASYNDIANWNYTKLPEVFGGGGGGLSFRV--KTEGELDEALKDALFNRDKLSLIEVIL 173 (183)
T ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCEEEEE--CCHHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 8656576999999999999478668428997--899999999999997289829999974
No 95
>PRK07586 hypothetical protein; Validated
Probab=98.99 E-value=1.9e-09 Score=87.49 Aligned_cols=26 Identities=8% Similarity=0.101 Sum_probs=13.5
Q ss_pred CCCCH-HHHHHHHHHHHHC-CCCHHHHH
Q ss_conf 44406-7888888875110-22102220
Q gi|254780655|r 229 NGHDH-HAITSTLRKAQLS-DKPTMIAC 254 (673)
Q Consensus 229 dG~d~-~~i~~a~~~ak~~-~kP~~I~~ 254 (673)
+..++ +.+.+|++.|+.. ..|+.|..
T Consensus 131 ~~~~i~~~~~~A~~~A~s~~~GPv~l~l 158 (514)
T PRK07586 131 SAADVGADAAAAVAAARSAPGQVATLIL 158 (514)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 8112599999999998537999625526
No 96
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.99 E-value=1.6e-09 Score=88.06 Aligned_cols=30 Identities=17% Similarity=0.093 Sum_probs=19.7
Q ss_pred CCCEEEECCHHHHHHHHHHHHCC--CCCCEEE
Q ss_conf 22112112012457777652025--6783499
Q gi|254780655|r 497 DLLVLRPADSIETLECWQVALKE--KNRPSVL 526 (673)
Q Consensus 497 nl~v~~P~d~~E~~~~~~~al~~--~~gP~~i 526 (673)
++.-++=.+++|+..+++.|++. .++|+.|
T Consensus 512 G~~g~~v~~~~el~~al~~Al~~~~~~~p~li 543 (574)
T PRK07979 512 GHVGIQISHPDELESKLSEALEQVRNNRLVFV 543 (574)
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 99799978999999999999842379981899
No 97
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.97 E-value=1.9e-09 Score=87.42 Aligned_cols=121 Identities=16% Similarity=0.106 Sum_probs=54.5
Q ss_pred CCCCHHHCCCCC-CCH-HHHHHHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCCC---CC
Q ss_conf 432001003257-620-02356787998728876220010--0355530012454111100001302-4543333---33
Q gi|254780655|r 407 KSDFSGRYLHYG-VRE-HAMAAAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHVL-THDSIGL---GE 478 (673)
Q Consensus 407 ~~~~p~r~i~~G-IaE-~~~~~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~~---G~ 478 (673)
+-..|.||+..| ..- ......|.|.++...-+|+++.- ..|+- .-..|..+.-.++|++++. ...+.+. .+
T Consensus 407 ~~~~p~~~~~~~~~g~mG~~lpaAiGa~lA~p~r~Vv~i~GDGsf~m-~~qEL~Tavr~~lpv~iiV~NN~~yg~i~~~q 485 (572)
T PRK08979 407 PFDKPRRWINSGGLGTMGFGLPAAMGVKMAMPDETVVCVTGDGSIQM-NIQELSTALQYDIPVKIINLNNRFLGMVKQWQ 485 (572)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCHHHHH-HHHHHHHHHHHCCCCEEEEEECCCHHHHHHHH
T ss_conf 66688753368987532354089999998589996899988279877-79999999997889489999797005999999
Q ss_pred C----CC---HH-HHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 3----31---01-000222101110122112112012457777652025678349995
Q gi|254780655|r 479 D----GP---TH-QPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSL 528 (673)
Q Consensus 479 D----Gp---TH-q~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~ 528 (673)
+ |. +. ...-|.+.+.---+..-++=.++.|+..+++.|+..+++|+.|=.
T Consensus 486 ~~~~~g~~~~~~~~~~pdf~~~A~a~G~~g~rV~~~~el~~Al~~Al~~~~~p~lieV 543 (572)
T PRK08979 486 DMIYSGRHSHSYMDSVPDFAKIAEAYGHVGMTISDPAELESGLAKALAMKDRLVFVDI 543 (572)
T ss_pred HHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 9860886676677899999999997799899979999999999999857698399999
No 98
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=98.97 E-value=2.9e-09 Score=86.13 Aligned_cols=38 Identities=8% Similarity=-0.034 Sum_probs=22.3
Q ss_pred CCCEEEECCHHHHHHHHHHHHCC---CCCCEEE--EECCCCCC
Q ss_conf 22112112012457777652025---6783499--95244443
Q gi|254780655|r 497 DLLVLRPADSIETLECWQVALKE---KNRPSVL--SLSRQNLP 534 (673)
Q Consensus 497 nl~v~~P~d~~E~~~~~~~al~~---~~gP~~i--r~~R~~~p 534 (673)
|+.-++-.++.|+..+++.|++. .++|+.| +..+...|
T Consensus 526 G~~g~rV~~~~el~~al~~Al~~~~~~g~P~lidv~~d~~~~~ 568 (589)
T PRK07525 526 GAEGVVVDTQEELGPALKRAIDAQMNEGKTTVIEVMCNQELGE 568 (589)
T ss_pred CCEEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEEEECHHHCC
T ss_conf 9879998999999999999997333589948999996822147
No 99
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=98.96 E-value=3.1e-09 Score=85.93 Aligned_cols=117 Identities=21% Similarity=0.206 Sum_probs=85.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC---
Q ss_conf 68886314799999999999985342688767845999843621143445578876522022330699962763223---
Q gi|254780655|r 127 ATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISID--- 203 (673)
Q Consensus 127 ~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~--- 203 (673)
.+-|++|.|++.|+|.++|.. |+.|+|++|||+++ +....+.-|..++|+-+++++||..+..-
T Consensus 50 ~~~g~mG~glpaAiGAk~A~P-----------dr~Vv~i~GDGsf~--m~~~EL~Ta~r~~lpv~~vV~NN~~~g~i~~~ 116 (196)
T cd02013 50 LSFGNCGYALPAIIGAKAAAP-----------DRPVVAIAGDGAWG--MSMMEIMTAVRHKLPVTAVVFRNRQWGAEKKN 116 (196)
T ss_pred CCCCHHHHHHHHHHHHHHHCC-----------CCEEEEEECCCCHH--HCHHHHHHHHHHCCCEEEEEEECCHHHHHHHH
T ss_conf 986647679999999997278-----------97499995797342--14489999999788906999978057899999
Q ss_pred ------CCC--CCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH---HCCCCHHHHHCCCC
Q ss_conf ------223--55678217998864144444444440678888888751---10221022201334
Q gi|254780655|r 204 ------GPI--SLADSTDQYARFRASGWNTLSVNGHDHHAITSTLRKAQ---LSDKPTMIACETVI 258 (673)
Q Consensus 204 ------~~~--~~~~~~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak---~~~kP~~I~~~T~k 258 (673)
+.. ......|..+..++||-..++|+ +.++|..|+++|. .+++|++|.+.+-.
T Consensus 117 q~~~~~~~~~~~~~~~~df~~~A~a~G~~g~~V~--~~~el~~al~~Ala~~~~~~P~lIeV~vD~ 180 (196)
T cd02013 117 QVDFYNNRFVGTELESESFAKIAEACGAKGITVD--KPEDVGPALQKAIAMMAEGKTTVIEIVCDQ 180 (196)
T ss_pred HHHHHCCCCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf 9987089742453699986899997598789978--999999999999985679986999999786
No 100
>PRK06154 hypothetical protein; Provisional
Probab=98.95 E-value=3e-09 Score=85.97 Aligned_cols=18 Identities=6% Similarity=0.139 Sum_probs=7.7
Q ss_pred HHHHHHHHHHC-CCCHHHH
Q ss_conf 88888875110-2210222
Q gi|254780655|r 236 ITSTLRKAQLS-DKPTMIA 253 (673)
Q Consensus 236 i~~a~~~ak~~-~kP~~I~ 253 (673)
+.+|++.|... ..|++|.
T Consensus 146 l~~A~~~a~~~~~GPV~l~ 164 (556)
T PRK06154 146 MRRAYTGLRNGRRGPVALE 164 (556)
T ss_pred HHHHHHHHHHCCCCCEEEE
T ss_conf 9999999985799708997
No 101
>PRK06163 hypothetical protein; Provisional
Probab=98.95 E-value=5.5e-09 Score=84.13 Aligned_cols=114 Identities=22% Similarity=0.292 Sum_probs=89.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
Q ss_conf 06888631479999999999998534268876784599984362114344557887652202233069996276322322
Q gi|254780655|r 126 EATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGP 205 (673)
Q Consensus 126 ~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~ 205 (673)
-+.-|++|++.++|.|+|++.. +++|+|+-|||++. |..-+|..++.+++.||++|+-||+.= +.
T Consensus 53 Fy~vGsMG~as~iaLG~Ala~p-----------~k~Vi~iDGDGs~L--M~mGsLaTi~~~~p~Nl~hIvlnN~~~--~s 117 (202)
T PRK06163 53 FYMLGSMGLAFPIALGVALAQP-----------KRRVIALEGDGSLL--MQLGALGTIAALAPKNLTIIVMDNGVY--QI 117 (202)
T ss_pred EEEECCCCCHHHHHHHHHHHCC-----------CCEEEEEECCHHHH--HCHHHHHHHHHHCCCCEEEEEECCCCC--CC
T ss_conf 6775221018899999998789-----------98289994766887--356889999971788569999869640--01
Q ss_pred CCCC-----CCCCHHHHHHHCCCC-CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf 3556-----782179988641444-44444440678888888751102210222013
Q gi|254780655|r 206 ISLA-----DSTDQYARFRASGWN-TLSVNGHDHHAITSTLRKAQLSDKPTMIACET 256 (673)
Q Consensus 206 ~~~~-----~~~~~~~~~~a~Gw~-~~~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T 256 (673)
+..+ ...|+.+.-+++||. +..| ++.+++.++++++.+.++|++|+++.
T Consensus 118 tGgQ~T~~~~~vDf~~iA~a~Gy~~~~~v--~~~~el~~~l~~~l~~~GP~fi~Vki 172 (202)
T PRK06163 118 TGGQPTLTSQTVDVVAIARGAGLENSHWA--ADEAHFEALVDQALSGPGPSFIAVRI 172 (202)
T ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCEEEE--CCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 68745776788799999997799857997--79999999999998389989999993
No 102
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=98.94 E-value=3.3e-09 Score=85.70 Aligned_cols=33 Identities=12% Similarity=0.087 Sum_probs=14.5
Q ss_pred CCCEEEEECCHHHHHHHHH-HHHHHHCCCCEEEE
Q ss_conf 9729999526889999999-99999739943998
Q gi|254780655|r 558 NAQVTIFSSGSELKIAVEA-CEILSSRNISTRVV 590 (673)
Q Consensus 558 ~~dv~iia~G~~v~~al~a-a~~L~~~Gi~~~Vi 590 (673)
.+-|.|++=|+......+. -....++++.+.+|
T Consensus 449 r~Vv~i~GDGsf~m~~~e~~l~ta~r~~lpi~iv 482 (568)
T PRK08327 449 RTVIATVGDGSFIFGVPTACYYVAERYGLPIVVI 482 (568)
T ss_pred CEEEEEECCCHHHHCCHHHHHHHHHHHCCCEEEE
T ss_conf 8299998461776476589999999978394999
No 103
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=98.93 E-value=4.1e-09 Score=85.04 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=54.3
Q ss_pred CHHHCCCCCC---CHHHHHHHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCCCC------
Q ss_conf 0010032576---2002356787998728876220010--0355530012454111100001302-45433333------
Q gi|254780655|r 410 FSGRYLHYGV---REHAMAAAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHVL-THDSIGLG------ 477 (673)
Q Consensus 410 ~p~r~i~~GI---aE~~~~~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~~G------ 477 (673)
.|.+++..|. .-.. ...|.|.++..+ +|+++.- ..|+- .-.-+..+.-.++|++++. ...|+..+
T Consensus 416 ~p~~~~~~g~~g~mG~g-lp~AigA~l~~~-r~Vv~i~GDGsf~m-~~~EL~Ta~r~~lpviivV~NN~g~~~~~~~~~~ 492 (572)
T PRK09259 416 KPRKRLDTGTWGVMGIG-MGYAIAAAVETG-KPVVAIEGDSAFGF-SGMEIETICRYNLPVTVVIFNNGGIYRGDGVDPS 492 (572)
T ss_pred CCCCEECCCCCCCCCCC-HHHHHHHHHCCC-CCEEEEECCCCCCC-CHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHC
T ss_conf 78716036876556655-799998644689-95899975841257-7899999998299918999938389999999860
Q ss_pred --CC-CCHH-HHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf --33-3101-0002221011101221121120124577776520256783499952
Q gi|254780655|r 478 --ED-GPTH-QPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLS 529 (673)
Q Consensus 478 --~D-GpTH-q~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~ 529 (673)
.+ +++= .+--|.+.+----|+.=++..+..|+..+++.|+++ ++|+.|-..
T Consensus 493 ~~~~~~~~~~~~~~df~~lA~a~G~~g~~V~~~~eL~~Al~~A~~~-~~P~lIeV~ 547 (572)
T PRK09259 493 GAGDPAPTVLVHHARYDKMMEAFGGVGYNVTTPDELRHALTEAIAS-GKPTLINAV 547 (572)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHC-CCCEEEEEE
T ss_conf 5887774124789999999996899799979999999999999838-994899998
No 104
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=98.90 E-value=4.9e-09 Score=84.48 Aligned_cols=101 Identities=16% Similarity=0.117 Sum_probs=47.0
Q ss_pred HHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCCCC-------CC-CCHHH-HCCCCCHHH
Q ss_conf 6787998728876220010--0355530012454111100001302-45433333-------33-31010-002221011
Q gi|254780655|r 426 AAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHVL-THDSIGLG-------ED-GPTHQ-PVEHLAALR 493 (673)
Q Consensus 426 ~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~~G-------~D-GpTHq-~iedia~lr 493 (673)
..+.|.++..+ +|+++.- ..|.- .-..+..+.-.++|++++. ..+|+..+ .+ +++.. +--|.+-+-
T Consensus 424 p~aigAa~~~~-~~Vv~i~GDGsf~m-~~~EL~Ta~r~~lpi~ivV~NN~g~~~~~~~~~~~~~~~~~~~~~~~df~~lA 501 (554)
T TIGR03254 424 GYAIAAAVETG-KPVVALEGDSAFGF-SGMEVETICRYNLPVCVVIFNNGGIYRGDDVNVVGADPAPTVLVHGARYDKMM 501 (554)
T ss_pred HHHHHHHHCCC-CEEEEEECCCCCCC-CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
T ss_conf 99998642799-81899975851030-48999999996899589998780899999987428987754467899999999
Q ss_pred HHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 101221121120124577776520256783499952
Q gi|254780655|r 494 AIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLS 529 (673)
Q Consensus 494 ~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~ 529 (673)
---|+.-++..+..|+..+++.|++. ++|+.|-..
T Consensus 502 ~a~G~~g~~V~~~~eL~~al~~Al~~-~~p~lIeV~ 536 (554)
T TIGR03254 502 KAFGGVGYNVTTPDELKAALNEALAS-GKPTLINAV 536 (554)
T ss_pred HHCCCEEEEECCHHHHHHHHHHHHHC-CCEEEEEEE
T ss_conf 87899899979999999999999827-990999998
No 105
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.90 E-value=3.7e-09 Score=85.37 Aligned_cols=150 Identities=17% Similarity=0.154 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHH--HHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHH---HHHHHHHHHCCCCCCEECCC
Q ss_conf 67888998865543--32203455567400026663445432001003257620023---56787998728876220010
Q gi|254780655|r 370 SELVLEVVNDCLPE--LIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAM---AAAMNGIALHKGLAPYSGTF 444 (673)
Q Consensus 370 ~g~~l~~i~~~~p~--iv~~sADl~~St~~~~~~~~~~~~~~~p~r~i~~GIaE~~~---~~~aaGla~~~g~~p~~~tf 444 (673)
...++..+.+..|+ +++ .|.. ++... ...+++-..|++++..|-- .+| ...|.|.++...=++++++-
T Consensus 361 p~~v~~~l~~~~~~daiv~--~d~G-~~~~w---~~~~~~~~~p~~~~~s~~~-GtMG~glPaAIGAkla~P~r~Vv~i~ 433 (550)
T COG0028 361 PQYVIKVLRELLPDDAIVV--TDVG-QHQMW---AARYFDFYRPRRFLTSGGL-GTMGFGLPAAIGAKLAAPDRKVVAIA 433 (550)
T ss_pred HHHHHHHHHHHCCCCEEEE--ECCC-HHHHH---HHHHCCCCCCCCEEECCCC-CCCCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 8999999998669987999--7872-86899---9984555788715657998-61112489999988638998289997
Q ss_pred --HHHHHHHHHHHHHHHHHHCCCEEECCCCC-CCCC-------CCCC-HHHHCCCC---CHHHHHCCCCEEEECCHHHHH
Q ss_conf --03555300124541111000013024543-3333-------3331-01000222---101110122112112012457
Q gi|254780655|r 445 --MVFSDYSRPAIRLASLMGIRVIHVLTHDS-IGLG-------EDGP-THQPVEHL---AALRAIPDLLVLRPADSIETL 510 (673)
Q Consensus 445 --~~F~~~~~~~ir~~al~~~~v~~v~th~g-i~~G-------~DGp-THq~iedi---a~lr~iPnl~v~~P~d~~E~~ 510 (673)
..|+- .-.-+--+...++|++++.-..| ++.- .++. ++.-+... .+-++ -+...++-.++.|+.
T Consensus 434 GDG~F~m-~~qEL~Ta~r~~lpv~ivv~nN~~~g~v~~~q~~~~~~~~~~~~~~~~~f~klAea-~G~~g~rv~~~~el~ 511 (550)
T COG0028 434 GDGGFMM-NGQELETAVRYGLPVKIVVLNNGGYGMVRQWQELFYGGRYSGTDLGNPDFVKLAEA-YGAKGIRVETPEELE 511 (550)
T ss_pred CCCHHHC-CHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH-CCCEEEEECCHHHHH
T ss_conf 0236850-79899999986899799999784434508998873477855111588768999997-798259968889999
Q ss_pred HHHHHHHCCCCCCEEEEEC
Q ss_conf 7776520256783499952
Q gi|254780655|r 511 ECWQVALKEKNRPSVLSLS 529 (673)
Q Consensus 511 ~~~~~al~~~~gP~~ir~~ 529 (673)
.+++.|++. ++|+.|-..
T Consensus 512 ~al~~al~~-~~p~lidv~ 529 (550)
T COG0028 512 EALEEALAS-DGPVLIDVV 529 (550)
T ss_pred HHHHHHHHC-CCCEEEEEE
T ss_conf 999999707-998899998
No 106
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=98.89 E-value=8.9e-09 Score=82.61 Aligned_cols=17 Identities=41% Similarity=0.593 Sum_probs=8.3
Q ss_pred CCCCCCCCCCHHHHHHHHH
Q ss_conf 8730688863147999999
Q gi|254780655|r 123 AGIEATTGPLGQGIANAVG 141 (673)
Q Consensus 123 ~~v~~~tG~lG~gis~a~G 141 (673)
|||-+.| .|-|+.+++.
T Consensus 64 ~gv~~~t--~GPG~tN~~t 80 (535)
T TIGR03394 64 LGVAAVT--YGAGAFNMVN 80 (535)
T ss_pred CEEEEEC--CCHHHHHHHH
T ss_conf 8999966--5778999999
No 107
>PRK08273 pyruvate decarboxylase; Provisional
Probab=98.89 E-value=6.8e-09 Score=83.45 Aligned_cols=164 Identities=16% Similarity=0.108 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCC-CCCCHH-HHHHHHHHHHHCCCCCCEECC-----
Q ss_conf 7888998865543322034555674000266634454320010032-576200-235678799872887622001-----
Q gi|254780655|r 371 ELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLH-YGVREH-AMAAAMNGIALHKGLAPYSGT----- 443 (673)
Q Consensus 371 g~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~p~r~i~-~GIaE~-~~~~~aaGla~~~g~~p~~~t----- 443 (673)
..++..+.+.+|+=-...+|...++ ... ..+++-..+.+++- -|.+-- .....|.|.++...-+|+++.
T Consensus 369 ~~v~~~l~~~lp~daIv~~D~G~~~-~w~---~r~l~~~~~~~~~~sg~~gsMG~glPaAIGA~lA~P~r~Vv~i~GDG~ 444 (597)
T PRK08273 369 QRVFWELSPRLPDNAILTADSGSCA-NWY---ARDLRMRRGMMASLSGGLATMGPAVPYAIAAKFAHPDRPVIALVGDGA 444 (597)
T ss_pred HHHHHHHHHHCCCCCEEEECCCCHH-HHH---HHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCH
T ss_conf 9999999985898738995686308-999---988247899737746876664507899999998589995899981615
Q ss_pred CHHH-HHHHHHHHHH-HHHHHCCCEEE-CCCCCCCC---------CCC-CCHHH--HCCCCCHHHHHCCCCEEEECCHHH
Q ss_conf 0035-5530012454-11110000130-24543333---------333-31010--002221011101221121120124
Q gi|254780655|r 444 FMVF-SDYSRPAIRL-ASLMGIRVIHV-LTHDSIGL---------GED-GPTHQ--PVEHLAALRAIPDLLVLRPADSIE 508 (673)
Q Consensus 444 f~~F-~~~~~~~ir~-~al~~~~v~~v-~th~gi~~---------G~D-GpTHq--~iedia~lr~iPnl~v~~P~d~~E 508 (673)
|.++ ++-..-..|. -..+++|++++ +...+++. |.. -.+-+ +-.|.+.+----++.-++-.++.|
T Consensus 445 f~M~~~~EL~Ta~ry~~~~~~lpvvvvV~NN~~~g~i~~~q~~~~g~~~~~~~~~lp~~d~a~~A~a~G~~g~rV~~~~e 524 (597)
T PRK08273 445 MQMNGMAELITVAKYWRQWADPRLIVLVLNNRDLNQVTWEQRVMEGDPKFEASQQLPDVPYARFAELLGLKGIRVDDPEQ 524 (597)
T ss_pred HHHCHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHH
T ss_conf 76350889999999764014899799998185157999999984588776764568999999999978997999899999
Q ss_pred HHHHHHHHHCCCCCCEEEEECC-CCCCCCCCC
Q ss_conf 5777765202567834999524-444334566
Q gi|254780655|r 509 TLECWQVALKEKNRPSVLSLSR-QNLPFLRTQ 539 (673)
Q Consensus 509 ~~~~~~~al~~~~gP~~ir~~R-~~~p~~~~~ 539 (673)
+..+|+.|++. ++|+.|=..- .++|.++..
T Consensus 525 l~~Al~~Al~~-~~P~lIeV~~Dp~~~p~pp~ 555 (597)
T PRK08273 525 LGAAWDEALAA-DRPVVLEVKTDPNVPPLPPH 555 (597)
T ss_pred HHHHHHHHHHC-CCCEEEEEECCCCCCCCCCC
T ss_conf 99999999848-99789999718999999996
No 108
>PRK11269 glyoxylate carboligase; Provisional
Probab=98.87 E-value=1.1e-08 Score=81.96 Aligned_cols=149 Identities=15% Similarity=0.168 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHH---HHHHHHHHCCCCCCEECCC--HH
Q ss_conf 888998865543322034555674000266634454320010032576200235---6787998728876220010--03
Q gi|254780655|r 372 LVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAMA---AAMNGIALHKGLAPYSGTF--MV 446 (673)
Q Consensus 372 ~~l~~i~~~~p~iv~~sADl~~St~~~~~~~~~~~~~~~p~r~i~~GIaE~~~~---~~aaGla~~~g~~p~~~tf--~~ 446 (673)
.++..+.+..|+=.....|...+. . -...+++-..|.+++..|-. ..|+ ..|.|.++...-+|+++.- ..
T Consensus 374 ~v~~~l~~~~~~d~iiv~d~G~~~-~---~~~~~~~~~~p~~~~~~g~~-G~mG~glPaAIGA~lA~Pdr~VV~i~GDG~ 448 (591)
T PRK11269 374 RVYEEMNKAFGRDTCYVSTIGLSQ-I---AAAQFLHVYKPRHWINCGQA-GPLGWTIPAALGVRAADPERPVVALSGDYD 448 (591)
T ss_pred HHHHHHHHHCCCCCEEEECCCHHH-H---HHHHHCCCCCCCCEECCCCC-CHHHHHHHHHHHHHHHCCCCCEEEEECCHH
T ss_conf 999999976799888998060779-9---99985335799877367665-558999999999999789996899987368
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEC-CCCCCCC----------------CCCCCHHH-----HCCCCCHHHHHCCCCEEEEC
Q ss_conf 55530012454111100001302-4543333----------------33331010-----00222101110122112112
Q gi|254780655|r 447 FSDYSRPAIRLASLMGIRVIHVL-THDSIGL----------------GEDGPTHQ-----PVEHLAALRAIPDLLVLRPA 504 (673)
Q Consensus 447 F~~~~~~~ir~~al~~~~v~~v~-th~gi~~----------------G~DGpTHq-----~iedia~lr~iPnl~v~~P~ 504 (673)
|+ +.-.-+-.++-.++|++++. ..++++. +.+++... +++-.++-+++ |+.=++=.
T Consensus 449 f~-m~~qEL~Tavr~~lpvv~vV~NN~~~G~Ir~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~Df~~~Aea~-G~~g~rV~ 526 (591)
T PRK11269 449 FQ-FLIEELAVGAQFNLPYIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSPELNGYGVDHVKVAEGL-GCKAIRVF 526 (591)
T ss_pred HH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHC-CCEEEEEC
T ss_conf 75-41999999999588908999968823099999997445644220557778865567888899999977-98799989
Q ss_pred CHHHHHHHHHHHHC---CCCCCEEEE
Q ss_conf 01245777765202---567834999
Q gi|254780655|r 505 DSIETLECWQVALK---EKNRPSVLS 527 (673)
Q Consensus 505 d~~E~~~~~~~al~---~~~gP~~ir 527 (673)
++.|+..+|+.|+. ..++|+.|=
T Consensus 527 ~~~el~~Al~~Ala~~~~~~~P~lv~ 552 (591)
T PRK11269 527 KPEDIAPAFEQAKALMAEFRVPVVVE 552 (591)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 99999999999974113579988999
No 109
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=98.87 E-value=1.1e-08 Score=81.91 Aligned_cols=114 Identities=18% Similarity=0.279 Sum_probs=82.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC---
Q ss_conf 88863147999999999999853426887678459998436211434455788765220223306999627632232---
Q gi|254780655|r 128 TTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDG--- 204 (673)
Q Consensus 128 ~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~--- 204 (673)
+.|++|-|++.|+|.++|.. |+.|+|++|||+++ +..--+.-|.+++|+-+++++||+.+.+-.
T Consensus 55 ~~g~mG~glPaAiGaklA~P-----------dr~Vv~i~GDGsf~--m~~~EL~Ta~r~~lpii~vV~NN~~~g~ir~~q 121 (202)
T cd02006 55 QAGPLGWTVPAALGVAAADP-----------DRQVVALSGDYDFQ--FMIEELAVGAQHRIPYIHVLVNNAYLGLIRQAQ 121 (202)
T ss_pred CCCHHHHHHHHHHHHHHHCC-----------CCEEEEEECCCCHH--HHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHH
T ss_conf 98703318999999998769-----------98599997684055--129999999996998399999795568999999
Q ss_pred -------CCC-----------CCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH----CCCCHHHHHCC
Q ss_conf -------235-----------56782179988641444444444406788888887511----02210222013
Q gi|254780655|r 205 -------PIS-----------LADSTDQYARFRASGWNTLSVNGHDHHAITSTLRKAQL----SDKPTMIACET 256 (673)
Q Consensus 205 -------~~~-----------~~~~~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak~----~~kP~~I~~~T 256 (673)
... .....|..+.-+++|...++|+ +.++|..||++|.+ .++|++|.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~kiAea~G~~g~rV~--~~~eL~~Al~~A~~~~~~~~~P~lIevii 193 (202)
T cd02006 122 RAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVT--KPEELAAAFEQAKKLMAEHRVPVVVEAIL 193 (202)
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf 9853474423254666885446789899999997899899979--99999999999998751479978999997
No 110
>PRK07449 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; Validated
Probab=98.87 E-value=1e-08 Score=82.09 Aligned_cols=31 Identities=26% Similarity=0.237 Sum_probs=16.5
Q ss_pred CCCEEEECCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 22112112012457777652025678349995
Q gi|254780655|r 497 DLLVLRPADSIETLECWQVALKEKNRPSVLSL 528 (673)
Q Consensus 497 nl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~ 528 (673)
|+.-++..++.|+..+++.++.. +||+.|-.
T Consensus 496 G~~~~~v~~~~eL~~al~~a~~~-~gP~lIeV 526 (548)
T PRK07449 496 GLEYHRPETWAELEEALDDALRT-PGLTVIEV 526 (548)
T ss_pred CCEEEEECCHHHHHHHHHHHHHC-CCCEEEEE
T ss_conf 99399859999999999999838-99889999
No 111
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=98.84 E-value=8.7e-08 Score=75.43 Aligned_cols=63 Identities=11% Similarity=0.105 Sum_probs=55.2
Q ss_pred CCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCCCCCEEEEECC
Q ss_conf 699729999526889999999999997399439985746581000868899964367977999728
Q gi|254780655|r 556 TPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIEA 621 (673)
Q Consensus 556 ~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE~ 621 (673)
.++.|++||+.|+....+.+|.+.|+++|+++.++.++++.||-. +.+.+++.+.+.++.+|-
T Consensus 259 ~eDAe~viV~~GS~~~~~k~AVd~lR~~G~KVGllr~r~~rPFP~---e~l~~~~k~~k~V~Vldr 321 (395)
T PRK08367 259 TEDAEIIFVTMGSLAGTLKEWVDKKREEGYKVGAAKITVYRPFPV---EEIRELAKKAKVLAFLEK 321 (395)
T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCH---HHHHHHHCCCCEEEEEEC
T ss_conf 999889999817428999999999997498576899888589999---999998657988999868
No 112
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=98.83 E-value=1.4e-08 Score=81.22 Aligned_cols=114 Identities=25% Similarity=0.290 Sum_probs=83.9
Q ss_pred CCCCCCHH--HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
Q ss_conf 68886314--7999999999999853426887678459998436211434455788765220223306999627632232
Q gi|254780655|r 127 ATTGPLGQ--GIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDG 204 (673)
Q Consensus 127 ~~tG~lG~--gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~ 204 (673)
..-|-.|. ++|.|+|.|+|. +..|+|++|||+++ +..-+|..+..++++-.|+++||++..|=.
T Consensus 46 ~NRG~sGIdg~lstAiGaa~a~------------~~pvv~i~GDgsf~--~d~~eL~t~~~~~~pv~ivV~NN~GggIf~ 111 (175)
T cd02009 46 ANRGASGIDGTLSTALGIALAT------------DKPTVLLTGDLSFL--HDLNGLLLGKQEPLNLTIVVINNNGGGIFS 111 (175)
T ss_pred ECCCCCCCCCHHHHHHHHHHCC------------CCCEEEEEECHHHH--CCHHHHHHHHHCCCCEEEEEEECCCCHHHH
T ss_conf 4688535220899999999658------------99889997026866--167899999866998299999489833999
Q ss_pred ---------CCCCCCC----CCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf ---------2355678----217998864144444444440678888888751102210222013
Q gi|254780655|r 205 ---------PISLADS----TDQYARFRASGWNTLSVNGHDHHAITSTLRKAQLSDKPTMIACET 256 (673)
Q Consensus 205 ---------~~~~~~~----~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T 256 (673)
..+..+. .|..+.-++|||.+.+|+ +.+++.++++++...++|++|+++|
T Consensus 112 ~l~~~~~~~~~~~~~~tp~~~df~~lA~a~G~~~~~v~--~~~el~~al~~~~~~~gp~lIEV~t 174 (175)
T cd02009 112 LLPQASFEDEFERLFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESALAQDGPHVIEVKT 174 (175)
T ss_pred HHHHHHCCCCCCEEECCCCCCCHHHHHHHCCCCEEEEC--CHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 98775036864312157776689999998699779849--9999999999998389989999968
No 113
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=98.78 E-value=3.6e-08 Score=78.21 Aligned_cols=115 Identities=24% Similarity=0.364 Sum_probs=82.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC-CCCCCC
Q ss_conf 6888631479999999999998534268876784599984362114344557887652202233069996276-322322
Q gi|254780655|r 127 ATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNG-ISIDGP 205 (673)
Q Consensus 127 ~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~-~si~~~ 205 (673)
++-|.+|+++++|+|.|+|. +++|||+.|||++. |..-.+..++.++..|+++|+=||+ +..-+.
T Consensus 39 ~~lGtMG~~~p~aiGaa~a~------------p~kVi~i~GDGs~l--M~~geL~Ti~~~~~~n~~~ivlnN~~~g~~g~ 104 (179)
T cd03372 39 YMLGSMGLASSIGLGLALAQ------------PRKVIVIDGDGSLL--MNLGALATIAAEKPKNLIIVVLDNGAYGSTGN 104 (179)
T ss_pred EEECHHHHHHHHHHHHHHCC------------CCCEEEEECCHHHH--HHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC
T ss_conf 73134450889999998657------------99689996780465--43669999997268978999983887554135
Q ss_pred --CCCCCCCCHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCC
Q ss_conf --355678217998864144444-444440678888888751102210222013345
Q gi|254780655|r 206 --ISLADSTDQYARFRASGWNTL-SVNGHDHHAITSTLRKAQLSDKPTMIACETVIG 259 (673)
Q Consensus 206 --~~~~~~~~~~~~~~a~Gw~~~-~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T~kG 259 (673)
+......|..+..+++|+... .|+ +.+++.++++++ .++|++|+++..++
T Consensus 105 q~t~~~~~~Df~~iA~a~G~~~~~~v~--~~e~l~~~l~~~--~~gP~~iev~i~~~ 157 (179)
T cd03372 105 QPTHAGKKTDLEAVAKACGLDNVATVA--SEEAFEKAVEQA--LDGPSFIHVKIKPG 157 (179)
T ss_pred CCCCCCCCCCHHHHHHHCCCCEEEEEC--CHHHHHHHHHHH--CCCCEEEEEEECCC
T ss_conf 036667898999999987997399989--999999999984--79999999998799
No 114
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=98.75 E-value=6.9e-07 Score=68.93 Aligned_cols=63 Identities=17% Similarity=0.169 Sum_probs=54.9
Q ss_pred CCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCCCCCEEEEECC
Q ss_conf 699729999526889999999999997399439985746581000868899964367977999728
Q gi|254780655|r 556 TPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIEA 621 (673)
Q Consensus 556 ~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE~ 621 (673)
.++.|++||+.||....+.+|.+.|+++|+++.++.++++.||-. +.+.+++.+.+.++++|-
T Consensus 261 ~edAd~viV~~GS~~~~~~eaVd~lr~~G~kVG~l~vr~~rPFP~---~~l~~~l~~~k~V~Vler 323 (394)
T PRK08366 261 IDDADFVFMGMGSLMGTVKEAVDLLRKEGYKVGYAKVRWFRPFPK---EELYEIAESVKGIAVLDR 323 (394)
T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCH---HHHHHHHCCCCEEEEEEC
T ss_conf 888779999937518999999999997598665899988489999---999998757998999657
No 115
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=98.75 E-value=6.8e-07 Score=68.97 Aligned_cols=199 Identities=16% Similarity=0.171 Sum_probs=107.5
Q ss_pred HCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCEEE-CCCCCCCCCCCCCHHHHCCCCCH
Q ss_conf 00325762002356787998728876220010035553001245411110000130-24543333333310100022210
Q gi|254780655|r 413 RYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHV-LTHDSIGLGEDGPTHQPVEHLAA 491 (673)
Q Consensus 413 r~i~~GIaE~~~~~~aaGla~~~g~~p~~~tf~~F~~~~~~~ir~~al~~~~v~~v-~th~gi~~G~DGpTHq~iedia~ 491 (673)
.|+++ =.|+++.+++.|.++ .|.+.+.+|-++=+.+|...|..++-.++|++++ ..+ +++ .-.++|..--|+..
T Consensus 58 ~~iq~-EsE~aA~~a~~GAs~-aGara~TaTSspGl~LM~E~l~~aag~~lP~Vi~vv~R-~~~--~~l~i~~dhsD~m~ 132 (407)
T PRK09622 58 EFVMV-ESEHAAMSACVGAAA-AGGRVATATSSQGLALMVEVLYQASGMRLPIVLNLVNR-ALA--APLNVNGDHSDMYL 132 (407)
T ss_pred EEEEE-CCHHHHHHHHHHHHH-HCCCEEEECCCCCHHHHHHHHHHHHHHHCCEEEEEECC-CCC--CCCCCCCCHHHHHH
T ss_conf 69985-578999999999985-38786730478738775208999998527848887415-678--88888778899997
Q ss_pred HHHHCCCCEEEECCHHHHHHHHHHHHCCC-----CCCEEEEEC-------CCCCCCC------------CCC---CCCCC
Q ss_conf 11101221121120124577776520256-----783499952-------4444334------------566---55322
Q gi|254780655|r 492 LRAIPDLLVLRPADSIETLECWQVALKEK-----NRPSVLSLS-------RQNLPFL------------RTQ---YESNN 544 (673)
Q Consensus 492 lr~iPnl~v~~P~d~~E~~~~~~~al~~~-----~gP~~ir~~-------R~~~p~~------------~~~---~~~~~ 544 (673)
.|.. ++.++.|++.+|+..+...|++.. -.|+.+-+- .+.+..+ ... .+...
T Consensus 133 ~rdt-G~i~l~~~svQE~~D~~i~Af~iAE~~~~r~Pv~v~~DGf~~sH~~~~v~~~~~e~~~~~~~~~~p~~~~ld~~~ 211 (407)
T PRK09622 133 SRDS-GWISLCTCNPQEAYDFTLMAFRIAEDQKVRVPTIVNQDGFLCSHTAQNVRPLSDAVAYQFVGEYQPKNSLLDFDK 211 (407)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 0588-739983799899999999999998875778888997302354156563335827777753355677666678756
Q ss_pred CCCC--------------------------------------C----CEEEEECCCCCEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 1234--------------------------------------7----379985699729999526889999999999997
Q gi|254780655|r 545 LCAL--------------------------------------G----AYDYISTPNAQVTIFSSGSELKIAVEACEILSS 582 (673)
Q Consensus 545 ~~~~--------------------------------------G----~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~ 582 (673)
.... | -.+..+.++.|++||+.|+....+.+|.+.|++
T Consensus 212 P~~~G~~~~~d~~~~~~~~~~~~~~~~~~~i~~~~~e~~~~~gr~y~~~e~y~~eDAe~viV~~GS~~~~~~~AVd~lR~ 291 (407)
T PRK09622 212 PVTYGAQTEEDWHFEHKAQLHHAIMSASSVIEEVFNDFAKLTGRQYHLVETYQMEDAEVAIFALGTTVESAIVAAKEMRK 291 (407)
T ss_pred CCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHH
T ss_conf 74447878997433322644176887899999999999998587556078717998779999807868999999999997
Q ss_pred CCCCEEEEECCCCCHHCCCCHHHHHHHCCCCCEEEEEC
Q ss_conf 39943998574658100086889996436797799972
Q gi|254780655|r 583 RNISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIE 620 (673)
Q Consensus 583 ~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE 620 (673)
+|+++.++.++++.||-. +.+.+.|.+.+.++.+|
T Consensus 292 ~G~KVGlir~r~~rPFP~---~~l~~al~~~K~V~Vld 326 (407)
T PRK09622 292 KGIKAGVATIRVLRPFPY---ERLGQALKNLKALAILD 326 (407)
T ss_pred CCCEEEEEEEEEECCCCH---HHHHHHHCCCCEEEEEE
T ss_conf 498675899998589999---99999875799899997
No 116
>PRK09404 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=98.59 E-value=8.4e-05 Score=53.82 Aligned_cols=204 Identities=16% Similarity=0.158 Sum_probs=106.1
Q ss_pred CCCCCCHHHHHHHHHHHHHCC--CCCCEECCCHHHHHHH---HHHHHHHHH----HHCCCEEECCCCCCCCCCCCCHHHH
Q ss_conf 325762002356787998728--8762200100355530---012454111----1000013024543333333310100
Q gi|254780655|r 415 LHYGVREHAMAAAMNGIALHK--GLAPYSGTFMVFSDYS---RPAIRLASL----MGIRVIHVLTHDSIGLGEDGPTHQP 485 (673)
Q Consensus 415 i~~GIaE~~~~~~aaGla~~~--g~~p~~~tf~~F~~~~---~~~ir~~al----~~~~v~~v~th~gi~~G~DGpTHq~ 485 (673)
++--..|.+..++--|.++.. .+.-+-+-|.-|..-| .||---++- +...+++..-| |. -|+ ||-|.+
T Consensus 653 ~nS~LSE~avlgFEyGYs~~~p~~LviWEAQFGDF~NgAQiiiDqfi~s~e~KW~~~sglvllLPH-Gy-eGq-GPEHSS 729 (931)
T PRK09404 653 IDSPLSEEAVLGFEYGYSTAEPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLSGLVMLLPH-GY-EGQ-GPEHSS 729 (931)
T ss_pred EECHHHHHHHHHHHHHHCCCCCCCEEEEHHHHCCCCCCCEEEEEEHHHHHHHHHCCCCCEEEECCC-CC-CCC-CCCCCC
T ss_conf 934125777765453000258875054243314554673489750010367776101674898778-76-788-964444
Q ss_pred --CCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECC-----
Q ss_conf --0222101110122112112012457777652025-67834999524444334566553221234737998569-----
Q gi|254780655|r 486 --VEHLAALRAIPDLLVLRPADSIETLECWQVALKE-KNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTP----- 557 (673)
Q Consensus 486 --iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~-~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~----- 557 (673)
+|-.--|..=.||.|+.|+.+.+.-++|+.=+.. --.|-++--|+.=+ ..+.....-+.+..|.+.-+..+
T Consensus 730 aR~ERfLQl~ae~N~~V~~~ttpA~~FH~LRrQ~~r~~rkPLiv~tpKsLL-R~~~~~S~~~e~~~g~F~~vi~d~~~~~ 808 (931)
T PRK09404 730 ARLERFLQLCAEDNMQVCNPTTPAQYFHLLRRQVLRPFRKPLVVMTPKSLL-RHKLAVSSLEELAEGSFQPVIGDIDELD 808 (931)
T ss_pred CCHHHHHHHCHHCCCEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCHHHH-CCCCCCCCHHHCCCCCCEEECCCCCCCC
T ss_conf 107899975302381899059879999999998503467875984736763-4854579989907994516327987688
Q ss_pred --CCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCC---CCCEEEEE-CCC-CHHHH
Q ss_conf --972999952688999999999999739943998574658100086889996436---79779997-286-02789
Q gi|254780655|r 558 --NAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIG---SSPIKIAI-EAG-LRQGW 627 (673)
Q Consensus 558 --~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~---~~~~~vti-E~g-~~~g~ 627 (673)
.-+-.|+++|-.....+++.+.... -++.+|-+-.+-||-.+ .+.++|. +...+|=+ |+- .-++|
T Consensus 809 ~~~v~rvi~CsGKvyydL~~~r~~~~~--~~vaivRiEqL~PfP~~---~l~~~l~~y~~~~~~vW~QEEp~N~GaW 880 (931)
T PRK09404 809 PKKVKRVVLCSGKVYYDLLEARRKRGI--DDVAIVRIEQLYPFPHK---ELAAELAKYPNVKEVVWCQEEPKNQGAW 880 (931)
T ss_pred HHCCCEEEECCCHHHHHHHHHHHHCCC--CCEEEEEEHHCCCCCHH---HHHHHHHHCCCCCEEEEECCCCCCCCCH
T ss_conf 400868998276899999999997699--97799982112799789---9999998689987179965575635788
No 117
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=98.54 E-value=3.3e-07 Score=71.20 Aligned_cols=113 Identities=26% Similarity=0.289 Sum_probs=82.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC-CHHHHHHHHHHHHHCCCCEEEEEECCCCCCC----C
Q ss_conf 8631479999999999998534268876784599984362114-3445578876522022330699962763223----2
Q gi|254780655|r 130 GPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLM-EGISQEAISFAGHLGLSKLIVLWDNNGISID----G 204 (673)
Q Consensus 130 G~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~-eG~~~EAl~~A~~~~l~nli~i~d~N~~si~----~ 204 (673)
..+|-+++.|.|+++|.. |.+|++++|||... .|. ..+..|...+++-+++++||+-+..- .
T Consensus 51 ~~mG~~~~~A~G~k~a~p-----------~~~Vv~~~GDG~~~~~G~--~~l~~av~~~~~it~iv~nN~~ygmTggQ~s 117 (178)
T cd02008 51 TCMGASIGVAIGMAKASE-----------DKKVVAVIGDSTFFHSGI--LGLINAVYNKANITVVILDNRTTAMTGGQPH 117 (178)
T ss_pred ECCCCCHHHHHHHHHHCC-----------CCCEEEEECCHHHHHHHH--HHHHHHHHHCCCEEEEEEECCCCCCCCCCCC
T ss_conf 135773789977898789-----------983799957627766319--9999999829795999994853001367558
Q ss_pred CCC------CCCCCCHHHHHHHCCCCCCC-CCCCCHHHHHHHHHHHHHCCCCHHHHHC
Q ss_conf 235------56782179988641444444-4444067888888875110221022201
Q gi|254780655|r 205 PIS------LADSTDQYARFRASGWNTLS-VNGHDHHAITSTLRKAQLSDKPTMIACE 255 (673)
Q Consensus 205 ~~~------~~~~~~~~~~~~a~Gw~~~~-vdG~d~~~i~~a~~~ak~~~kP~~I~~~ 255 (673)
++. .....|+.+..+++|-..+. .+..|++++.+++++|.+.+.|++|++.
T Consensus 118 p~~~~~~~~~~~~~d~~~~a~a~G~~~v~~~~~~d~~~~~~~l~~A~~~~G~s~I~v~ 175 (178)
T cd02008 118 PGTGKTLTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALAVPGVSVIIAK 175 (178)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 9988877787898798999997799999997844199999999999738997899994
No 118
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type; InterPro: IPR012846 Two groups of proteins form acetolactate from two molecules of pyruvate. The type of acetolactate synthase described in this entry also catalyzes the formation of acetohydroxybutyrate from pyruvate and 2-oxobutyrate, an early step in the branched chain amino acid biosynthesis; it is therefore also termed acetohydroxyacid synthase. In bacteria, this catalytic chain is associated with a smaller regulatory chain in an alpha2/beta2 heterotetramer. Acetolactate synthase is a thiamine pyrophosphate enzyme. In this type, FAD and Mg++ are also found. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.; GO: 0000287 magnesium ion binding, 0003984 acetolactate synthase activity, 0030976 thiamin pyrophosphate binding, 0050660 FAD binding, 0009082 branched chain family amino acid biosynthetic process.
Probab=98.26 E-value=2e-06 Score=65.54 Aligned_cols=394 Identities=20% Similarity=0.262 Sum_probs=183.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCC
Q ss_conf 97643136899999984332544577898878877998565201899999997076889988986400038879889888
Q gi|254780655|r 40 GHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEY 119 (673)
Q Consensus 40 GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe~ 119 (673)
|.||+.+ .+++=+||+ |...+ .=++||-.==|+ =+| +--||- + -+|
T Consensus 21 GYPGGA~--LpiYD~Ly~----fe~~s-----~~~HIL~RHEQg---A~H-aADGYA-----------R----AsG---- 66 (593)
T TIGR00118 21 GYPGGAI--LPIYDALYR----FETDS-----GIEHILVRHEQG---AVH-AADGYA-----------R----ASG---- 66 (593)
T ss_pred CCCCCCH--HHHHHHHHC----CCCCC-----CCEEECCCHHHH---HHH-HHCCCE-----------E----CCC----
T ss_conf 4898643--567766503----01268-----832721672557---645-423440-----------0----158----
Q ss_pred CCCCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHHCCCCCCCCEEE-EEECCCCCCCHHH---------------------
Q ss_conf 89987306888631479999-999999998534268876784599-9843621143445---------------------
Q gi|254780655|r 120 GSCAGIEATTGPLGQGIANA-VGMAIAERKLREEFGDVLIDHYTY-VLVGDGCLMEGIS--------------------- 176 (673)
Q Consensus 120 ~~~~~v~~~tG~lG~gis~a-~G~A~a~k~~~~~~~~~~~d~~v~-~iiGDG~l~eG~~--------------------- 176 (673)
+ +||-+.| +|=|-.+. .|+|-| |+.+- +-+++.--|= .+||-=+.||=..
T Consensus 67 -k-vGVv~~T--SGPGATN~VTGiAtA--y~DS~-P~Vv~tGQV~t~~IG~DAFQE~D~~GIt~PitKHsf~V~~~edlp 139 (593)
T TIGR00118 67 -K-VGVVLAT--SGPGATNLVTGIATA--YMDSV-PLVVFTGQVPTSLIGSDAFQEADILGITMPITKHSFQVKSAEDLP 139 (593)
T ss_pred -C-EEEEEEE--CCCCCHHHHHHHHHH--HHCCC-CEEEECCCHHHHHCCCCCCHHHHHCCCCCCEEEEEECCCCHHHHH
T ss_conf -3-0289860--798723356567775--42576-537751760001013750000011134666567530025878999
Q ss_pred ---HHHHHHHHHHCCCCEEEEEEC--------CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHH------HHHHH
Q ss_conf ---578876522022330699962--------7632232235567821799886414444444444067------88888
Q gi|254780655|r 177 ---QEAISFAGHLGLSKLIVLWDN--------NGISIDGPISLADSTDQYARFRASGWNTLSVNGHDHH------AITST 239 (673)
Q Consensus 177 ---~EAl~~A~~~~l~nli~i~d~--------N~~si~~~~~~~~~~~~~~~~~a~Gw~~~~vdG~d~~------~i~~a 239 (673)
-||.-+|.+=+-.+++| |- +++.++-|.+.. +.+|- -.+.||-.. +|.+|
T Consensus 140 ~~~~~AF~IA~TGRPGPVlv--DlPKDv~~~~~~~~~~~P~~v~--------LPgY~---P~~~Gh~~Qdefv~qsI~kA 206 (593)
T TIGR00118 140 RIIKEAFHIATTGRPGPVLV--DLPKDVTTAEIEFPYDDPEKVN--------LPGYK---PTVEGHPLQDEFVMQSIKKA 206 (593)
T ss_pred HHHHHHHHHHCCCCCCCEEE--ECCCCCCCHHHCCCCCCCCEEE--------CCCCC---CCCCCCCCHHHHHHHHHHHH
T ss_conf 99998776432766688278--5884224333326788886000--------78878---88898831457899999999
Q ss_pred HHHHHHCCCCH-------------------------HHHHCCCCCCCCCCCCCCCC------CCCC-----CCCHHHH--
Q ss_conf 88751102210-------------------------22201334555700047711------0334-----3722332--
Q gi|254780655|r 240 LRKAQLSDKPT-------------------------MIACETVIGFGSPNRAGTNK------VHGS-----ALGQEEI-- 281 (673)
Q Consensus 240 ~~~ak~~~kP~-------------------------~I~~~T~kG~G~~~~e~~~~------~HG~-----~l~~ee~-- 281 (673)
++.....+||+ +=.+.|.+|+|. |=|+++. .||. ++.+-++
T Consensus 207 ~~li~~AkkPVilvGGGvin~a~as~~L~elae~~~~PV~tTLmGlG~-FP~~Hp~~LGMlGMHGt~~AN~Av~EcDllI 285 (593)
T TIGR00118 207 AELIEKAKKPVILVGGGVINIAGASEELKELAERLQIPVTTTLMGLGS-FPEDHPLSLGMLGMHGTKTANLAVHECDLLI 285 (593)
T ss_pred HHHHHHHCCCEEEECCHHHHCCCCHHHHHHHHHHCCCCCEECCCCCCC-CCCCCHHHHCCCCCHHHHHHHHHHHHCCEEE
T ss_conf 999997269779864135420554079999985407760010156788-7846835503567657888732542053214
Q ss_pred ------------------HHHH--------HHCCCCCCCCCCC-------------HHHHHHHHHH-HHH----HHHHHH
Q ss_conf ------------------1256--------6348777854389-------------7899999975-433----356688
Q gi|254780655|r 282 ------------------KATR--------KALNWDLDPFFIP-------------DDIMKKWRLA-GLR----SSQTRA 317 (673)
Q Consensus 282 ------------------~~~~--------k~lg~~~~~f~ip-------------~~v~~~~~~~-~~~----~~~~~~ 317 (673)
-.+| -.++.|.||-+|. ..|++.+-.+ ... ......
T Consensus 286 AvG~RFdDRvTGnl~~FAp~AkraaaeGrGGiiHiDIDPaeIgK~v~~diPiVGDAr~VL~~ll~~~~~~~~~~~~~~~~ 365 (593)
T TIGR00118 286 AVGARFDDRVTGNLAKFAPNAKRAAAEGRGGIIHIDIDPAEIGKNVRVDIPIVGDARNVLEELLKKLEKEKALKERSEEQ 365 (593)
T ss_pred EEEEEECCCCCCCHHHHCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 53000056634877672316567541478736999853765577114640103675899999999987630356722488
Q ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH---HHHCCCCCCC
Q ss_conf 7642467631111100-23001110776302355542000001355431013467888998865543---3220345556
Q gi|254780655|r 318 DWQERLSSMKSSIRKE-FERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSELVLEVVNDCLPE---LIGGSADLTG 393 (673)
Q Consensus 318 ~w~~~~~~~~~~~~~e-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vatr~a~g~~l~~i~~~~p~---iv~~sADl~~ 393 (673)
.|.+++..|+..++-. ++.....++ | -+.+++.+.+..++ =...+-|+ |
T Consensus 366 ~W~~~i~~Wk~~~~l~Y~~~~~~~ki------------------K--------PQ~vi~~~~~~~~~~~~~aivTTDV-G 418 (593)
T TIGR00118 366 AWLEQINKWKKEYPLAYMDYTEEGKI------------------K--------PQQVIEEISRVTKDIGREAIVTTDV-G 418 (593)
T ss_pred HHHHHHHHHHHHCCHHHCCCCCCCCC------------------C--------CHHHHHHHHHHCCCCCCCEEEECCC-C
T ss_conf 99999999876147312466788853------------------6--------0799999999627888536897277-7
Q ss_pred CCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHH--HH----CCCCCCEE-----CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 74000266634454320010032576200235678799--87----28876220-----010035553001245411110
Q gi|254780655|r 394 SNGTKTSQMKAISKSDFSGRYLHYGVREHAMAAAMNGI--AL----HKGLAPYS-----GTFMVFSDYSRPAIRLASLMG 462 (673)
Q Consensus 394 St~~~~~~~~~~~~~~~p~r~i~~GIaE~~~~~~aaGl--a~----~~g~~p~~-----~tf~~F~~~~~~~ir~~al~~ 462 (673)
.+- .+ ...|++-..|.|||.-| .++||==|+ |+ -..-..|+ +.|.|=+|- +--+.--+
T Consensus 419 QhQ-MW--aA~fy~~~~Pr~fI~SG----GLGTMGFGlPAAiGAkvA~pe~~Vi~i~GDGsF~Mn~QE----L~t~~~y~ 487 (593)
T TIGR00118 419 QHQ-MW--AAQFYPFKKPRKFITSG----GLGTMGFGLPAAIGAKVAKPEETVICITGDGSFQMNLQE----LSTIVQYD 487 (593)
T ss_pred HHH-HH--HHHHCCCCCCCCEECCC----CCCCCCCCCHHHHCCCCCCCCCCEEEEECCCCCCCHHHH----HHHHHHCC
T ss_conf 347-88--98615777886413137----763110102688600004788664787538732123467----88998718
Q ss_pred CCCEEEC-CCCCCCCC------------CCCCHHHHC--CCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCC--CCCEE
Q ss_conf 0001302-45433333------------333101000--2221011101221121120124577776520256--78349
Q gi|254780655|r 463 IRVIHVL-THDSIGLG------------EDGPTHQPV--EHLAALRAIPDLLVLRPADSIETLECWQVALKEK--NRPSV 525 (673)
Q Consensus 463 ~~v~~v~-th~gi~~G------------~DGpTHq~i--edia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~--~gP~~ 525 (673)
+||+.|. ...- +| -=-.||+.- =|..-|.-=-|+.=++=..+.|+...|+.|+... ++|+.
T Consensus 488 iPV~i~iLNN~~--LGMV~QWQ~lfY~~RyS~t~~~~~~PDF~kLAEayG~~G~ri~~~~E~~~kL~Ea~~~~r~n~Pv~ 565 (593)
T TIGR00118 488 IPVKIVILNNRY--LGMVRQWQELFYEERYSETHMGSELPDFVKLAEAYGIKGIRIEKPEELDEKLKEALESKRNNEPVL 565 (593)
T ss_pred CCEEEEEECCCC--CCHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 964999845896--560488888752110235763068942899998729502554788779999999986146888469
Q ss_pred EEE
Q ss_conf 995
Q gi|254780655|r 526 LSL 528 (673)
Q Consensus 526 ir~ 528 (673)
|=.
T Consensus 566 ~Dv 568 (593)
T TIGR00118 566 LDV 568 (593)
T ss_pred EEE
T ss_conf 999
No 119
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=98.20 E-value=0.0004 Score=48.92 Aligned_cols=105 Identities=15% Similarity=0.169 Sum_probs=62.9
Q ss_pred HHHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCC-C-CCC-----------CCHHHHCCC
Q ss_conf 56787998728876220010--0355530012454111100001302-454333-3-333-----------310100022
Q gi|254780655|r 425 AAAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHVL-THDSIG-L-GED-----------GPTHQPVEH 488 (673)
Q Consensus 425 ~~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~-~-G~D-----------GpTHq~ied 488 (673)
++++.|++-.+.-+++++.- +||+-=...+||.+-.++.+++|+. +.+-.+ + |++ +.....|++
T Consensus 409 ~~~~~G~~~~~~~~~v~a~iGDgTffHSG~~al~~AV~~~~nit~~ILdN~~tAMTGgQ~~pg~~~~~~g~~~~~i~i~~ 488 (595)
T TIGR03336 409 IGVASGLSKAGEKQRIVAFIGDSTFFHTGIPGLINAVYNKANITVVILDNRITAMTGHQPNPGTGVTGMGEATKEISIEE 488 (595)
T ss_pred HHHHEEECCCCCCCCEEEEECCCCCHHCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEHHH
T ss_conf 56531303257987379991366101056599999997699869999868850434899999866544688643223899
Q ss_pred CCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 210111012211211201245777765202567834999524
Q gi|254780655|r 489 LAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSR 530 (673)
Q Consensus 489 ia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R 530 (673)
+.--..+-.+.+..|.|-.++..+++.+++. +||++|.+-+
T Consensus 489 ~~r~~Gv~~v~~v~~~~~~~~~~~~~e~~~~-~GvsViI~~q 529 (595)
T TIGR03336 489 LCRASGVEFVEVVDPLNVKETIEVFKAALAA-EGVSVIIAKQ 529 (595)
T ss_pred HHHHCCCCCEEEECCCCHHHHHHHHHHHHHC-CCCEEEEECC
T ss_conf 8876699843687877989999999998618-9978999729
No 120
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=98.15 E-value=5.3e-06 Score=62.49 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=22.7
Q ss_pred CCC-CHHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf 444-0678888888751102210222013
Q gi|254780655|r 229 NGH-DHHAITSTLRKAQLSDKPTMIACET 256 (673)
Q Consensus 229 dG~-d~~~i~~a~~~ak~~~kP~~I~~~T 256 (673)
+++ -..+|.++++.+....||+.|..-+
T Consensus 141 ~~~~A~~eIDrvi~~~~~~~RPvYI~lP~ 169 (557)
T COG3961 141 DINTAPREIDRVIRTALKQRRPVYIGLPA 169 (557)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEECCH
T ss_conf 71011799999999999754984897656
No 121
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=98.13 E-value=0.00016 Score=51.71 Aligned_cols=65 Identities=17% Similarity=0.222 Sum_probs=48.0
Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHH-HCCCCEEEEECCCCCHHCCCCHHHHHHHCCCCC--EEEEECCCCH
Q ss_conf 9972999952688999999999999-739943998574658100086889996436797--7999728602
Q gi|254780655|r 557 PNAQVTIFSSGSELKIAVEACEILS-SRNISTRVVSVPCFELFFEQSDSYRAQIIGSSP--IKIAIEAGLR 624 (673)
Q Consensus 557 ~~~dv~iia~G~~v~~al~aa~~L~-~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~--~~vtiE~g~~ 624 (673)
++.++.||++|+....+.+++..+. ++|+++.++-++.+.||.. +.+.++++... .++..|-..+
T Consensus 255 ~DAe~viV~~Gss~~~~~~a~~~~~~~~g~kvg~l~vr~~rPFp~---~~i~~~l~~~~~~~Vl~~e~~~g 322 (365)
T COG0674 255 EDAEIVIVAMGSSKGSTAEAVVDLLRDKGEKVGLLKVRTLRPFPA---EEIREVLPKTNAVVVLDVEISLG 322 (365)
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCH---HHHHHHHCCCCEEEEEEEECCCC
T ss_conf 972789999675248689999998874185468999977568998---99997613462269999823675
No 122
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=98.09 E-value=0.0015 Score=44.86 Aligned_cols=204 Identities=15% Similarity=0.154 Sum_probs=110.9
Q ss_pred CCCCCCHHHHHHHHHHHHHCC--CCCCEECCCHHHHHHHH---HHHHHHHH----HHCCCEEECCCCCCCCCCCCCHHHH
Q ss_conf 325762002356787998728--87622001003555300---12454111----1000013024543333333310100
Q gi|254780655|r 415 LHYGVREHAMAAAMNGIALHK--GLAPYSGTFMVFSDYSR---PAIRLASL----MGIRVIHVLTHDSIGLGEDGPTHQP 485 (673)
Q Consensus 415 i~~GIaE~~~~~~aaGla~~~--g~~p~~~tf~~F~~~~~---~~ir~~al----~~~~v~~v~th~gi~~G~DGpTHq~ 485 (673)
+|--..|.+..++--|.++.. .+.-+-+-|.-|.+-++ ||---++- +...+++..-| |. .|+ ||-|.+
T Consensus 957 ~nS~LSE~avLGFEYGYS~~~P~~LviWEAQFGDFaNGAQvIIDQFIsSgE~KW~~~SgLVlLLPH-Gy-EGQ-GPEHSS 1033 (1234)
T PRK12270 957 YDSLLSEYAAMGFEYGYSVGNPDALVLWEAQFGDFANGAQTIIDEFISSGEAKWGQRSGVVLLLPH-GY-EGQ-GPDHSS 1033 (1234)
T ss_pred ECCCCHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHCCCEEEEEEEEECHHHHHHHHCCEEEECCC-CC-CCC-CCCCCH
T ss_conf 815213555555552443368973354065553440586489865786177766413575788678-88-889-965214
Q ss_pred --CCCCCHHHHHCCCCEEEECCHHHHHHHHHHHH-CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECC-----
Q ss_conf --02221011101221121120124577776520-2567834999524444334566553221234737998569-----
Q gi|254780655|r 486 --VEHLAALRAIPDLLVLRPADSIETLECWQVAL-KEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTP----- 557 (673)
Q Consensus 486 --iedia~lr~iPnl~v~~P~d~~E~~~~~~~al-~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~----- 557 (673)
+|-.--|.+=-||+|..|+.+.+.-++|+.=+ ...-.|-++-.|++=+ ..+......+.+..|.+.-+..+
T Consensus 1034 ARiERfLQLcAe~NmqV~~pTTPAqyFHlLRRQ~~r~~RKPLIv~tPKSLL-Rh~~a~S~l~e~~~G~F~~Vi~D~~~~~ 1112 (1234)
T PRK12270 1034 ARIERFLQLCAEGNMTVAQPSTPANYFHLLRRQALSGIRRPLVVFTPKSML-RNKAAVSDVEDFTEGKFRSVIDDPTVGD 1112 (1234)
T ss_pred HHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEECCHHHH-CCCCCCCCHHHCCCCCCEECCCCCCCCC
T ss_conf 668999986104785999349838999999998741578886985847874-5833479978818995446168987788
Q ss_pred --CCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCC---CCCEEEE-ECCC-CHHHH
Q ss_conf --972999952688999999999999739943998574658100086889996436---7977999-7286-02789
Q gi|254780655|r 558 --NAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIG---SSPIKIA-IEAG-LRQGW 627 (673)
Q Consensus 558 --~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~---~~~~~vt-iE~g-~~~g~ 627 (673)
.-+=.|+++|-.....++..+.... -++.+|-+-.+-||-.+. +..+|. +...+|= -|+- .-++|
T Consensus 1113 ~~~VkRvilCSGKvYYDL~~~R~~~~~--~dvAIvRiEQLyPfP~~~---l~~~l~~Ypna~e~vW~QEEP~N~GAW 1184 (1234)
T PRK12270 1113 PAKVKRVLLCSGKLYYDLAARREKDGR--DDVAIVRVEQLYPLPERR---LRETLARYPNAEEVFWVQEEPANQGAW 1184 (1234)
T ss_pred HHHCCEEEEECCHHHHHHHHHHHHCCC--CCEEEEEEEECCCCCHHH---HHHHHHHCCCCCEEEEECCCCCCCCCH
T ss_conf 410838998067219999999997699--976999840028998899---999997489988689953486635778
No 123
>KOG1185 consensus
Probab=98.05 E-value=6.9e-05 Score=54.43 Aligned_cols=184 Identities=14% Similarity=0.115 Sum_probs=76.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCC--CCCHHHHHHHH-CCCCCCCCC
Q ss_conf 976431368999999843325445778988788779985652018999999970768--89988986400-038879889
Q gi|254780655|r 40 GHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYALLYLLGYQ--DVTIEDIKNFR-TIGSKTAGH 116 (673)
Q Consensus 40 GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~~~l~G~~--~~~~e~l~~~r-~~~s~~~Gh 116 (673)
-|-+++.+..+++....+.+ +.+ --|.+--+|-+++.-+...+ |-+ +..-|+-.-|. +--+++.|
T Consensus 8 ~~~~~~~~g~~~vA~~Lk~~---gVe-------~iFgiVGipV~el~~aaqal-GIk~I~~RnEqaA~yAA~A~gyLt~- 75 (571)
T KOG1185 8 VDKASSRHGGELVAAVLKAQ---GVE-------YIFGIVGIPVIELAVAAQAL-GIKFIGTRNEQAAVYAASAYGYLTG- 75 (571)
T ss_pred CCCCCCCCHHHHHHHHHHHC---CCE-------EEEEEECCCHHHHHHHHHHC-CCEEEECCCHHHHHHHHHHHHHHCC-
T ss_conf 36532252889999999976---962-------99998162107999999980-9868303417889989987654328-
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHCCCCCCCCEEEEEE---------CCCCCCCHHHHHHHHHHHHH
Q ss_conf 888899873068886314799999-99999998534268876784599984---------36211434455788765220
Q gi|254780655|r 117 PEYGSCAGIEATTGPLGQGIANAV-GMAIAERKLREEFGDVLIDHYTYVLV---------GDGCLMEGISQEAISFAGHL 186 (673)
Q Consensus 117 pe~~~~~~v~~~tG~lG~gis~a~-G~A~a~k~~~~~~~~~~~d~~v~~ii---------GDG~l~eG~~~EAl~~A~~~ 186 (673)
.|||-.-++ |-|+-.++ |++-|+ -++ .-..+| |-|++||=.-.|++.--..+
T Consensus 76 -----kpGV~lVvs--GPGl~hal~gv~NA~---~n~--------wPll~IgGsa~~~~~~rGafQe~dQvel~rp~~K~ 137 (571)
T KOG1185 76 -----KPGVLLVVS--GPGLTHALAGVANAQ---MNC--------WPLLLIGGSASTLLENRGAFQELDQVELFRPLCKF 137 (571)
T ss_pred -----CCEEEEEEC--CCHHHHHHHHHHHHH---HCC--------CCEEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf -----971899924--870777777764413---226--------75799844662432156322004177663166653
Q ss_pred --CCCCEEEEEECC----CCCCCCCCCCCC---CCCHHHHHH----HCCCCC-------CCCCCCCHHHHHHHHHHHHHC
Q ss_conf --223306999627----632232235567---821799886----414444-------444444067888888875110
Q gi|254780655|r 187 --GLSKLIVLWDNN----GISIDGPISLAD---STDQYARFR----ASGWNT-------LSVNGHDHHAITSTLRKAQLS 246 (673)
Q Consensus 187 --~l~nli~i~d~N----~~si~~~~~~~~---~~~~~~~~~----a~Gw~~-------~~vdG~d~~~i~~a~~~ak~~ 246 (673)
+...+=-|.+.= +.+++|..+.++ +.|+....+ ...-+. --|-+-+..+|.+|.+-.|..
T Consensus 138 ~~r~~~~~~I~~~i~kA~r~a~~G~PG~~yvD~P~d~v~~~~~~e~~~~~~~p~~~~p~P~i~~p~~s~i~~av~llk~A 217 (571)
T KOG1185 138 VARPTSVRDIPPTIRKAVRAAMSGRPGPVYVDLPADVVLPSKMVEKEIDVSEPQPPIPLPPIPGPPPSQIQKAVQLLKSA 217 (571)
T ss_pred CCCCCCHHHCCHHHHHHHHHHHCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 05778835453899999999735999766995334002320110023456787788899998999989999999999855
Q ss_pred CCCHHHH
Q ss_conf 2210222
Q gi|254780655|r 247 DKPTMIA 253 (673)
Q Consensus 247 ~kP~~I~ 253 (673)
++|.+|+
T Consensus 218 KrPLlvv 224 (571)
T KOG1185 218 KRPLLVV 224 (571)
T ss_pred CCCEEEE
T ss_conf 7967998
No 124
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=98.04 E-value=2.5e-05 Score=57.69 Aligned_cols=113 Identities=18% Similarity=0.208 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCC-----CCCCC
Q ss_conf 3147999999999999853426887678459998436211434455788765220223306999627632-----23223
Q gi|254780655|r 132 LGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGIS-----IDGPI 206 (673)
Q Consensus 132 lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~s-----i~~~~ 206 (673)
.|-++++|.|+.++.+ |.+|+++.|||..- .+-..++..|...+.+-+++++||.-+. -++.+
T Consensus 53 hG~a~~~A~G~k~a~p-----------~~~Vva~~GDG~~~-~iG~~~l~~A~~rn~~i~~iv~DN~~ygmTGgQ~sptT 120 (193)
T cd03375 53 HGRALAVATGVKLANP-----------DLTVIVVSGDGDLA-AIGGNHFIHAARRNIDITVIVHNNQIYGLTKGQASPTT 120 (193)
T ss_pred HCCCHHHHHHHHHHCC-----------CCEEEEEEECCHHH-HCCHHHHHHHHHHCCCEEEEEECCCCEECCCCCCCCCC
T ss_conf 1160888867987599-----------97399997065576-45618899999809974999985840442368348898
Q ss_pred C------------CCCCCCHHHHHHHCCCCC-CCCCCCCHHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf 5------------567821799886414444-4444440678888888751102210222013
Q gi|254780655|r 207 S------------LADSTDQYARFRASGWNT-LSVNGHDHHAITSTLRKAQLSDKPTMIACET 256 (673)
Q Consensus 207 ~------------~~~~~~~~~~~~a~Gw~~-~~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T 256 (673)
. .....|+.+..+++|-.+ -+++-.|++++.+++++|.+.+.|++|++.+
T Consensus 121 ~~g~~t~ttp~G~~~~~~d~~~ia~a~G~~yVa~~~~~~~~~l~~~ik~Al~~~G~s~I~v~s 183 (193)
T cd03375 121 PEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQHKGFSFVEVLS 183 (193)
T ss_pred CCCCEECCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 898554136778765788999999875998799965799999999999998089988999988
No 125
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=98.03 E-value=0.00099 Score=46.08 Aligned_cols=104 Identities=20% Similarity=0.243 Sum_probs=62.9
Q ss_pred HHHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEEC-C-----------CCCCCCCCCC--CHHHHCCC
Q ss_conf 56787998728876220010--0355530012454111100001302-4-----------5433333333--10100022
Q gi|254780655|r 425 AAAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHVL-T-----------HDSIGLGEDG--PTHQPVEH 488 (673)
Q Consensus 425 ~~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v~-t-----------h~gi~~G~DG--pTHq~ied 488 (673)
+++++|++....-++|. +- ++|.--...+|+.+-+++.+++++. + |.|.++-..| .++..|+.
T Consensus 434 ig~a~g~~~~~~k~~va-~iGDsTF~HsGi~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~~~~~g~~~~~i~iee 512 (640)
T COG4231 434 IGIAGGLSFASTKKIVA-VIGDSTFFHSGILALINAVYNKANILVVVLDNRTTAMTGGQPHPGTGVAAEGTKSTAIVIEE 512 (640)
T ss_pred HHHCCCCCCCCCCCEEE-EECCCCCCCCCCHHHHHHHHCCCCEEEEEEECCCHHCCCCCCCCCCCCCCCCCCCCEEEHHH
T ss_conf 00024542036885699-95366322048188999986589759999856302102898899856456787650357656
Q ss_pred CCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 210111012211211201245777765202567834999524
Q gi|254780655|r 489 LAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSR 530 (673)
Q Consensus 489 ia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R 530 (673)
+.=--.+--+.+..|.|-.++...++.|++.. +|++|.+-|
T Consensus 513 ~~r~~Gv~~v~~vdp~~~~~~~~~~keale~~-gpsViiak~ 553 (640)
T COG4231 513 VVRAMGVEDVETVDPYDVKELSEAIKEALEVP-GPSVIIAKR 553 (640)
T ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHHHHCCC-CCEEEEECC
T ss_conf 56524841540128735688999999986378-865999747
No 126
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=97.96 E-value=1.8e-05 Score=58.64 Aligned_cols=89 Identities=24% Similarity=0.305 Sum_probs=40.5
Q ss_pred HHHHH-HHHHHHHHHHHHHHHCCCCCCCCEEEEE---ECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 14799-9999999999853426887678459998---4362114344557887652202233069996276322322355
Q gi|254780655|r 133 GQGIA-NAVGMAIAERKLREEFGDVLIDHYTYVL---VGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISL 208 (673)
Q Consensus 133 G~gis-~a~G~A~a~k~~~~~~~~~~~d~~v~~i---iGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~ 208 (673)
-||.+ +|+++|...+ + +++|++ ||-|+.+ +. -|..+|-..+|+-|.+==| -+ ..
T Consensus 65 EQgMAhaAiayaKq~~--R---------rr~~A~tsSiGPGA~N--mv-TaAalA~~NrlPvLllPgD--vf------A~ 122 (617)
T COG3962 65 EQGMAHAAIAYAKQHR--R---------RRIYAVTSSIGPGAAN--MV-TAAALAHVNRLPVLLLPGD--VF------AT 122 (617)
T ss_pred HHHHHHHHHHHHHHHH--H---------CEEEEEECCCCCCHHH--HH-HHHHHHHHHCCCEEEECCC--HH------CC
T ss_conf 7677889999999975--4---------2115774366885788--99-9999987604856750441--00------12
Q ss_pred CCCCCHHHHHHHCCCCCCCCCC------------CCHHHHHHHHHHH
Q ss_conf 6782179988641444444444------------4067888888875
Q gi|254780655|r 209 ADSTDQYARFRASGWNTLSVNG------------HDHHAITSTLRKA 243 (673)
Q Consensus 209 ~~~~~~~~~~~a~Gw~~~~vdG------------~d~~~i~~a~~~a 243 (673)
..++++...+|.|+=-.+.+|. .-.++|..|+-.|
T Consensus 123 R~PDPVLQQ~E~~~d~~it~NDcfrPVSRYfDRItRPEQl~sal~rA 169 (617)
T COG3962 123 RQPDPVLQQLEQFGDGTITTNDCFRPVSRYFDRITRPEQLMSALPRA 169 (617)
T ss_pred CCCCHHHHHHHCCCCCCEECCCCCCCHHHHHHHCCCHHHHHHHHHHH
T ss_conf 69985888653035672220113434777766137999999999999
No 127
>KOG0451 consensus
Probab=97.84 E-value=0.00053 Score=48.01 Aligned_cols=503 Identities=17% Similarity=0.213 Sum_probs=212.7
Q ss_pred CCEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC----------------------
Q ss_conf 8779985652018999999970768899889864000388798898888998730688----------------------
Q gi|254780655|r 72 RDRFVLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATT---------------------- 129 (673)
Q Consensus 72 rDr~v~s~GH~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~t---------------------- 129 (673)
-..+|+--.|..-+- .+++..+++. -+-||+..+. +-|||.-+.-|+..|.
T Consensus 210 ie~viigmpHRGRln----Llt~Ll~fpP--~~mFRK~~G~-sEFpE~~~A~gDVlSHl~sS~dykg~~~~lhvtMlpNP 282 (913)
T KOG0451 210 IEHVIIGMPHRGRLN----LLTALLNFPP--AKMFRKLSGA-SEFPEDIEAMGDVLSHLHSSEDYKGLGKKLHVTMLPNP 282 (913)
T ss_pred CCEEEEECCCCCCCH----HHHHHHCCCH--HHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCH
T ss_conf 505887056667405----8888843998--9999873073-22750356777788873235544046884479955881
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH--HCCC---CCCCCEEEE--EECCCCCC-CHHHHHHHHHH--HHHCCCCEEEEEECCC
Q ss_conf 8631479999999999998534--2688---767845999--84362114-34455788765--2202233069996276
Q gi|254780655|r 130 GPLGQGIANAVGMAIAERKLRE--EFGD---VLIDHYTYV--LVGDGCLM-EGISQEAISFA--GHLGLSKLIVLWDNNG 199 (673)
Q Consensus 130 G~lG~gis~a~G~A~a~k~~~~--~~~~---~~~d~~v~~--iiGDG~l~-eG~~~EAl~~A--~~~~l~nli~i~d~N~ 199 (673)
-||-.--+.|+|-+.++..-++ .|.. ..+..+|.+ +-||++.. .|..||.++++ -|..+.--+-++-||+
T Consensus 283 SHLEAvNPVAmGKtR~rqqsr~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQ 362 (913)
T KOG0451 283 SHLEAVNPVAMGKTRSRQQSRGEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQ 362 (913)
T ss_pred HHHHCCCCHHHCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCHHHCCCCCCHHHHHHCCCCCEEECCEEEEEECCC
T ss_conf 66401572532203677775137898987768887726899985451111586368777431487335565589996262
Q ss_pred CCCCCCCCCCC----CCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH----HHCCCCHHHHHCCCCCCCCCCCCC----
Q ss_conf 32232235567----821799886414444444444067888888875----110221022201334555700047----
Q gi|254780655|r 200 ISIDGPISLAD----STDQYARFRASGWNTLSVNGHDHHAITSTLRKA----QLSDKPTMIACETVIGFGSPNRAG---- 267 (673)
Q Consensus 200 ~si~~~~~~~~----~~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~a----k~~~kP~~I~~~T~kG~G~~~~e~---- 267 (673)
+....+-+... ..|+ -++++..||.|+|.|.+++.+|-+-| +.-.|-++|-.....-||.-...+
T Consensus 363 vgfTtp~~rGRSs~ycsDi---aK~~~~pviHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwgHnelddp~ft 439 (913)
T KOG0451 363 VGFTTPGDRGRSSAYCSDI---AKSIQAPVIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNELDDPTFT 439 (913)
T ss_pred CCCCCCCCCCCCCHHHHHH---HHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHCCCCCCCCCCC
T ss_conf 0023764466530245678---9873787798479998999999999999999864222530677777523444674446
Q ss_pred -------------CC------CCCCCCCCHHHHHHHHHHC----C--CCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_conf -------------71------1033437223321256634----8--777854389789999997543-33566887642
Q gi|254780655|r 268 -------------TN------KVHGSALGQEEIKATRKAL----N--WDLDPFFIPDDIMKKWRLAGL-RSSQTRADWQE 321 (673)
Q Consensus 268 -------------~~------~~HG~~l~~ee~~~~~k~l----g--~~~~~f~ip~~v~~~~~~~~~-~~~~~~~~w~~ 321 (673)
.+ -.-+.-+.+++++..|+++ + +...+.+.|.+.+-..+..+. ..++....|..
T Consensus 440 spvmyk~v~aReSvPdlya~~L~~eg~~tee~vkE~~~~y~~~Ln~eL~~~~~y~Pp~~~~~~~W~gf~qapk~it~WdT 519 (913)
T KOG0451 440 SPVMYKEVEARESVPDLYAQQLAKEGVLTEEKVKEMRDEYMKYLNEELALAPAYQPPPSYFEKQWTGFQQAPKEITYWDT 519 (913)
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHCCCCC
T ss_conf 70477777764134089999998615553999999999999999899840776689963467752212158055311134
Q ss_pred HHHHHHHHHHHC---CCCHHHHHCCCCCHHHHHHHCCCCC----CC----CCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 467631111100---2300111077630235554200000----13----554310134678889988655433220345
Q gi|254780655|r 322 RLSSMKSSIRKE---FERRFSDALPDCFDNAFINLKKKFE----HS----KPMIATRKSSELVLEVVNDCLPELIGGSAD 390 (673)
Q Consensus 322 ~~~~~~~~~~~e---~~~~~~~~~p~~~~~~~~~~~~~~~----~~----~~~vatr~a~g~~l~~i~~~~p~iv~~sAD 390 (673)
.++-. |.-..+-+.|+.|..-...+..... +. +-.-||-.+ .++..+.-.-.++-.-.-|
T Consensus 520 -------Gv~~dLLrfiG~~SV~vPedf~~H~HLlKtHv~sRm~Km~~G~kiDWaTAEA--lA~GSll~qG~nVRiSGqD 590 (913)
T KOG0451 520 -------GVDYDLLRFIGQQSVTVPEDFNIHPHLLKTHVNSRMKKMENGVKIDWATAEA--LAIGSLLYQGHNVRISGQD 590 (913)
T ss_pred -------CCCHHHHHHHCCCCEECCHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHHHCCCCEEEECCC
T ss_conf -------7646899983667640632114147999988999999875377645477888--9888888536733660340
Q ss_pred CCCCCCCCCCCC------CC-CCCCC--CHH--HCCCC---CCCHHHHHHHHHHHHHCC-CCCCEE-CCCHHHHHHHHHH
Q ss_conf 556740002666------34-45432--001--00325---762002356787998728-876220-0100355530012
Q gi|254780655|r 391 LTGSNGTKTSQM------KA-ISKSD--FSG--RYLHY---GVREHAMAAAMNGIALHK-GLAPYS-GTFMVFSDYSRPA 454 (673)
Q Consensus 391 l~~St~~~~~~~------~~-~~~~~--~p~--r~i~~---GIaE~~~~~~aaGla~~~-g~~p~~-~tf~~F~~~~~~~ 454 (673)
+...|......+ .. +.+-| -++ -++++ -..|.+..++--||+... ...+++ +-|.-|..-+ |
T Consensus 591 VGRGTFshRHAM~VdQ~Td~~~IPLN~m~~~qkg~LEvans~LSEEAvLGFEyGmsienP~~L~iWEAQFGDFfNGA--Q 668 (913)
T KOG0451 591 VGRGTFSHRHAMLVDQQTDEMFIPLNSMEGGQKGKLEVANSILSEEAVLGFEYGMSIENPNNLIIWEAQFGDFFNGA--Q 668 (913)
T ss_pred CCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEHHHHCCCCCCC--E
T ss_conf 47641121211243125661353621037776871674266221766630110323578653245323330313675--4
Q ss_pred H-HHHHHH--------HCCCEEECCCCCCCCCCC--CCHHHH--CCCCC---------HHHHHCCCCEEEECCHHHHHHH
Q ss_conf 4-541111--------000013024543333333--310100--02221---------0111012211211201245777
Q gi|254780655|r 455 I-RLASLM--------GIRVIHVLTHDSIGLGED--GPTHQP--VEHLA---------ALRAIPDLLVLRPADSIETLEC 512 (673)
Q Consensus 455 i-r~~al~--------~~~v~~v~th~gi~~G~D--GpTHq~--iedia---------~lr~iPnl~v~~P~d~~E~~~~ 512 (673)
| -+--+. ....++..-| |.| ||-|.+ ||-.- .=.---||.|..|..+.+...+
T Consensus 669 IIiDTFi~sgE~KWl~ssglvmLLPH-----GyDGAgpeHSSCRiERFLQlCDS~E~~vDGd~VNm~vvnPTTpAQYfHl 743 (913)
T KOG0451 669 IIIDTFIVSGETKWLESSGLVMLLPH-----GYDGAGPEHSSCRIERFLQLCDSKETSVDGDSVNMHVVNPTTPAQYFHL 743 (913)
T ss_pred EEEEEEECCCCHHHHHHCCEEEECCC-----CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHH
T ss_conf 78764010551244541874898257-----7688897643156999998732333367776045797079978999999
Q ss_pred HHHHHCC-CCCCEEEEECCCCC--C----CC-CCCCCCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCC
Q ss_conf 7652025-67834999524444--3----34-566553221234737998569972999952688999999999999739
Q gi|254780655|r 513 WQVALKE-KNRPSVLSLSRQNL--P----FL-RTQYESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRN 584 (673)
Q Consensus 513 ~~~al~~-~~gP~~ir~~R~~~--p----~~-~~~~~~~~~~~~G~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~G 584 (673)
++.-+-. --.|-++.-|+--+ | .. +-.......-.+|-. ....+.-+-.|+.+|--.....++.+.+..+.
T Consensus 744 LRRQ~vrNfRKPLiVv~PK~LLRlPaA~ST~~ef~PGTtf~nVigd~-~~~p~kvkkvifcSGKH~y~l~k~Re~rgakd 822 (913)
T KOG0451 744 LRRQLVRNFRKPLIVVAPKTLLRLPAATSTHEEFQPGTTFHNVIGDT-IAKPEKVKKVIFCSGKHYYTLAKEREKRGAKD 822 (913)
T ss_pred HHHHHHHHCCCCEEEECHHHHHHCCCHHHHHHHCCCCCCCCCCCCCC-CCCHHHHEEEEEECCCCHHHHHHHHHHCCCCC
T ss_conf 99998774258648855088761700120476428985115433443-36946701799965831434888787605555
Q ss_pred CCEEEEECCCCCHHCCCC
Q ss_conf 943998574658100086
Q gi|254780655|r 585 ISTRVVSVPCFELFFEQS 602 (673)
Q Consensus 585 i~~~Vi~~~s~k~ld~~~ 602 (673)
.+.++-+-++-||--++
T Consensus 823 -~~AI~RvE~LCPFPi~~ 839 (913)
T KOG0451 823 -TVAILRVESLCPFPIQE 839 (913)
T ss_pred -CEEEEEHHHCCCCCHHH
T ss_conf -21467525408974699
No 128
>KOG1184 consensus
Probab=97.81 E-value=4.9e-05 Score=55.54 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=22.4
Q ss_pred CCCC-HHHHHHHHHHHHHCCCCHHHHHCCCC
Q ss_conf 4440-67888888875110221022201334
Q gi|254780655|r 229 NGHD-HHAITSTLRKAQLSDKPTMIACETVI 258 (673)
Q Consensus 229 dG~d-~~~i~~a~~~ak~~~kP~~I~~~T~k 258 (673)
|+.| .+.|.+|++.+-...||+.|-+-+=.
T Consensus 141 ~~e~A~~~ID~aI~~~~~~~kPVYi~vP~n~ 171 (561)
T KOG1184 141 DIEDAPEQIDKAIRTALKESKPVYIGVPANL 171 (561)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 8767699999999999874498599821430
No 129
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=97.75 E-value=0.00033 Score=49.50 Aligned_cols=123 Identities=20% Similarity=0.181 Sum_probs=81.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCC-----CC
Q ss_conf 8863147999999999999853426887678459998436211434455788765220223306999627632-----23
Q gi|254780655|r 129 TGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGIS-----ID 203 (673)
Q Consensus 129 tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~s-----i~ 203 (673)
....|-.++.|.|+..|.+.+..+ . |-.|+++.|||.+. ..-+..+.+|...+.|-+++++||..++ .|
T Consensus 55 h~~hgra~a~AtGik~a~~~l~~~--~---~~~Vv~~~GDG~~~-dIG~~~l~haa~Rn~~i~~iv~dN~~YgnTGGQ~S 128 (235)
T cd03376 55 HVAFENAAAVASGIEAALKALGRG--K---DITVVAFAGDGGTA-DIGFQALSGAAERGHDILYICYDNEAYMNTGIQRS 128 (235)
T ss_pred CHHHCCHHHHHHHHHHHHHHHHCC--C---CCEEEEEECCCHHH-HHHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCCC
T ss_conf 400014677666199999986138--9---96399996474475-42078899999829983999988821003689669
Q ss_pred CCCCC-----------------CCCCCHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHHCCCCHHHHHCCC
Q ss_conf 22355-----------------678217998864144444-4444406788888887511022102220133
Q gi|254780655|r 204 GPISL-----------------ADSTDQYARFRASGWNTL-SVNGHDHHAITSTLRKAQLSDKPTMIACETV 257 (673)
Q Consensus 204 ~~~~~-----------------~~~~~~~~~~~a~Gw~~~-~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T~ 257 (673)
..+.. ...-|+.....++|-.+. ++...|+..+.+.+++|...+.|++|++.+.
T Consensus 129 ~tTp~G~~t~tsp~G~~~~g~~~~~kd~~~i~~a~g~~yVA~~~~~~~~~~~k~i~~A~~~~G~s~i~v~sp 200 (235)
T cd03376 129 GSTPYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKALSIEGPAYIHILSP 200 (235)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 899898631126888557787778869999998709958999745899999999999972899889999647
No 130
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase; InterPro: IPR014092 Members of this family are examples of pyruvate oxidase (1.2.3.3 from EC), an enzyme with FAD and TPP as cofactors that catalyses the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase (1.2.2.2 from EC) as in Escherichia coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name..
Probab=97.62 E-value=0.00017 Score=51.55 Aligned_cols=16 Identities=31% Similarity=0.435 Sum_probs=10.4
Q ss_pred CCCCCCCCHHHHHHHHHH
Q ss_conf 976431368999999843
Q gi|254780655|r 40 GHPGLPMGMADVVTALFT 57 (673)
Q Consensus 40 GH~g~~l~~~el~~~L~~ 57 (673)
|-||+||++ +|-||+.
T Consensus 19 G~pGGS~~S--~M~AL~~ 34 (577)
T TIGR02720 19 GIPGGSFNS--TMDALAE 34 (577)
T ss_pred CCCCCCHHH--HHHHHHH
T ss_conf 368875778--9999986
No 131
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=97.60 E-value=0.00018 Score=51.46 Aligned_cols=117 Identities=21% Similarity=0.204 Sum_probs=82.2
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHCCCCCCEE-CCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHCCCC
Q ss_conf 0100325762002356787998728876220-010035553001245411110000130245433333333101000222
Q gi|254780655|r 411 SGRYLHYGVREHAMAAAMNGIALHKGLAPYS-GTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHL 489 (673)
Q Consensus 411 p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~-~tf~~F~~~~~~~ir~~al~~~~v~~v~th~gi~~G~DGpTHq~iedi 489 (673)
+++.+..-.-|++++.+|.|.+.-+| +|+| .|....+.-+.++|..+...+.|++++.+..+.. ..+..+||.++|+
T Consensus 34 ~~~~~v~~~hE~~A~~mAdgyar~~g-~~v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~~~-~~~~~~~q~~d~~ 111 (154)
T cd06586 34 DKRIIDTVIHELGAAGAAAGYARAGG-PPVVIVTSGTGLLNAINGLADAAAEHLPVVFLIGARGIS-AQAKQTFQSMFDL 111 (154)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHC-CCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHH-HCCCCCCCCHHHH
T ss_conf 99579912858899999999999749-948996379579989999999987569889996688876-6278988311399
Q ss_pred CHHHHHCCCCEEE--ECCH-HHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 1011101221121--1201-245777765202567834999524
Q gi|254780655|r 490 AALRAIPDLLVLR--PADS-IETLECWQVALKEKNRPSVLSLSR 530 (673)
Q Consensus 490 a~lr~iPnl~v~~--P~d~-~E~~~~~~~al~~~~gP~~ir~~R 530 (673)
.++|.+.....-. |.+. ..+..+++.|... .||++|.+||
T Consensus 112 ~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-pGPv~l~iP~ 154 (154)
T cd06586 112 GMYRSIPEANISSPSPAELPAGIDHAIRTAYAS-QGPVVVRLPR 154 (154)
T ss_pred HHHHHHHHEEEECCCHHHHHHHHHHHHHHHHCC-CCCEEEECCC
T ss_conf 999999864899499999999999999998549-9878986288
No 132
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=97.60 E-value=0.00012 Score=52.79 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=10.2
Q ss_pred CCCCCCCCCHHHHHHHHH
Q ss_conf 897643136899999984
Q gi|254780655|r 39 SGHPGLPMGMADVVTALF 56 (673)
Q Consensus 39 ~GH~g~~l~~~el~~~L~ 56 (673)
+|.||++.|-. +-+|.
T Consensus 35 aGYpGtPstei--~e~la 50 (640)
T COG4231 35 AGYPGTPSTEL--IETLA 50 (640)
T ss_pred ECCCCCCCHHH--HHHHH
T ss_conf 00699981799--99999
No 133
>PRK08322 acetolactate synthase; Reviewed
Probab=97.54 E-value=0.00073 Score=47.03 Aligned_cols=19 Identities=11% Similarity=0.183 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHCC-CCHHHH
Q ss_conf 8888888751102-210222
Q gi|254780655|r 235 AITSTLRKAQLSD-KPTMIA 253 (673)
Q Consensus 235 ~i~~a~~~ak~~~-kP~~I~ 253 (673)
.+.+|++.|.... +|+.|.
T Consensus 137 ~~~~A~~~A~~~~pGPV~l~ 156 (547)
T PRK08322 137 VVREAFRLAEEERPGAVHLE 156 (547)
T ss_pred HHHHHHHHHHCCCCCEEEEE
T ss_conf 99999999743899728990
No 134
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=97.47 E-value=0.0015 Score=44.80 Aligned_cols=127 Identities=20% Similarity=0.170 Sum_probs=78.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCC-----CC
Q ss_conf 8863147999999999999853426887678459998436211434455788765220223306999627632-----23
Q gi|254780655|r 129 TGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGIS-----ID 203 (673)
Q Consensus 129 tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~s-----i~ 203 (673)
.+..|...+.|.|+..|.+.+..+....-.+-.||++-|||++. ..-+..+.+|...+.|-+++++||.-+. .|
T Consensus 57 h~~hgra~a~AtGik~a~~~~~~~~~~~~~~~~Vv~~~GDGd~~-~IG~~~l~ha~~Rn~~i~~I~~dN~~Yg~TggQ~S 135 (237)
T cd02018 57 NSLFEDANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATY-DIGFGALSHSLFRGEDITVIVLDNEVYSNTGGQRS 135 (237)
T ss_pred HHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHH-HCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 00123318889999999987311110125788689995573576-50078899999828983999988813446788479
Q ss_pred CCCCC------------CCCCCHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHH-CCCCHHHHHCC
Q ss_conf 22355------------678217998864144444-4444406788888887511-02210222013
Q gi|254780655|r 204 GPISL------------ADSTDQYARFRASGWNTL-SVNGHDHHAITSTLRKAQL-SDKPTMIACET 256 (673)
Q Consensus 204 ~~~~~------------~~~~~~~~~~~a~Gw~~~-~vdG~d~~~i~~a~~~ak~-~~kP~~I~~~T 256 (673)
+.+.. ..+-|+.....++|-.+. ++.-.+...+.+++++|.. .+.|++|++.+
T Consensus 136 ptTp~G~~T~ttp~G~~~~~~~~~~ia~~~g~~yVAr~s~~~~~~~~k~~~~A~~~~~G~s~v~vls 202 (237)
T cd02018 136 GATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVVKEAISRTDGPTFIHAYT 202 (237)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 8998987130168997678879999998659958999855999999999999986599988999974
No 135
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=97.46 E-value=0.00026 Score=50.21 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHH-HCCCCEEEEECCCCC
Q ss_conf 8999999999999-739943998574658
Q gi|254780655|r 569 ELKIAVEACEILS-SRNISTRVVSVPCFE 596 (673)
Q Consensus 569 ~v~~al~aa~~L~-~~Gi~~~Vi~~~s~k 596 (673)
-+....++.+.+. .+|.++=|.+-+|.-
T Consensus 505 ~~~~~~~~~~e~~~~~GvsViI~~q~Ca~ 533 (595)
T TIGR03336 505 NVKETIEVFKAALAAEGVSVIIAKQPCVL 533 (595)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 98999999999861899789997290327
No 136
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=97.43 E-value=0.0014 Score=44.97 Aligned_cols=123 Identities=21% Similarity=0.175 Sum_probs=78.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC-CCHHHHHHHHHHHHHCCCCEEEEEECCCC-----CCCCC
Q ss_conf 3147999999999999853426887678459998436211-43445578876522022330699962763-----22322
Q gi|254780655|r 132 LGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCL-MEGISQEAISFAGHLGLSKLIVLWDNNGI-----SIDGP 205 (673)
Q Consensus 132 lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l-~eG~~~EAl~~A~~~~l~nli~i~d~N~~-----si~~~ 205 (673)
.|-..+.|.|+..|.|.+..+ |..|+++.|||.. .-| +.++..|...+.|-+++++||.-+ |-|+.
T Consensus 71 f~~~~a~asGi~~Alk~~~~~------d~~Viv~~GDG~~~dIG--~~~l~ha~~Rn~~i~~iv~DNe~Y~nTGgQ~S~t 142 (300)
T PRK11864 71 FAATAAVASGIEEALKVRGEK------GHVVVVWAGDGGTADIG--FQALSGAAERGHDILYIMYDNEAYMNTGIQRSGS 142 (300)
T ss_pred HCCCHHHHHHHHHHHHHHCCC------CCEEEEEECCCHHHHHH--HHHHHHHHHCCCCEEEEEECCCEEECCCCCCCCC
T ss_conf 412267799999999970899------86799992475265400--6878999982898599998571310468846888
Q ss_pred CCC------------CCCCCHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHHCCCCHHHHHCCC--CCCCC
Q ss_conf 355------------678217998864144444-4444406788888887511022102220133--45557
Q gi|254780655|r 206 ISL------------ADSTDQYARFRASGWNTL-SVNGHDHHAITSTLRKAQLSDKPTMIACETV--IGFGS 262 (673)
Q Consensus 206 ~~~------------~~~~~~~~~~~a~Gw~~~-~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T~--kG~G~ 262 (673)
+.. ...-|+.....++|-.+. .+---+...+.+.+++|...+.|++|++.+. .||++
T Consensus 143 Tp~Ga~t~ttp~Gk~~~kkdl~~i~~a~g~~YVA~~~~a~~~~l~~~i~kA~~~~G~s~i~v~spCp~gw~~ 214 (300)
T PRK11864 143 TPYGAWTTTTPGGKRERKKPVADIMAAHGVPYVATASIAYPEDFIRKLKKAAEIPGFKFIHLLAPCPPGWRF 214 (300)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC
T ss_conf 988542455899987899899999997599879998556999999999999718998799997889565886
No 137
>pfam03894 XFP D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase. Bacterial enzyme splits fructose-6-P and/or xylulose-5-P with the aid of inorganic phosphate into either acetyl-P and erythrose-4-P and/or acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22. This family is distantly related to transketolases e.g. pfam02779.
Probab=97.33 E-value=0.00051 Score=48.13 Aligned_cols=146 Identities=19% Similarity=0.126 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHH-HHHHCCCCCCCCCCCCC-----CC--CCCCCC------CCCHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 6788899886554-33220345556740002-----66--634454------3200100325762002356787998728
Q gi|254780655|r 370 SELVLEVVNDCLP-ELIGGSADLTGSNGTKT-----SQ--MKAISK------SDFSGRYLHYGVREHAMAAAMNGIALHK 435 (673)
Q Consensus 370 ~g~~l~~i~~~~p-~iv~~sADl~~St~~~~-----~~--~~~~~~------~~~p~r~i~~GIaE~~~~~~aaGla~~~ 435 (673)
.|+++..+.+.+| ++-++++|-..||...- +. .....+ ....||.+++ ..|+.+-+++.|..+.|
T Consensus 4 lg~~l~dv~~~Np~~fRvf~PDEt~SNrL~av~e~t~r~w~~~~~~~~~~~~~~~~GrV~e~-LSEh~~eG~leGY~LtG 82 (179)
T pfam03894 4 LGKYLRDVVKLNDTNFRIFGPDETMSNRLWAVFEVTKRQWMMEILPPNDEELSADGGRVDEQ-LSEHLCEGWLEGYLLTG 82 (179)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHCC
T ss_conf 78999999996875463148872100010899987576101244787753326788504566-23999999999887507
Q ss_pred CCCCEECCCHHHH---HHHHHH----HHHHHHH--H---CCCEEECCCCCCCCCCCCCHHHH--CCCCCHHHHHCC-CCE
Q ss_conf 8762200100355---530012----4541111--0---00013024543333333310100--022210111012-211
Q gi|254780655|r 436 GLAPYSGTFMVFS---DYSRPA----IRLASLM--G---IRVIHVLTHDSIGLGEDGPTHQP--VEHLAALRAIPD-LLV 500 (673)
Q Consensus 436 g~~p~~~tf~~F~---~~~~~~----ir~~al~--~---~~v~~v~th~gi~~G~DGpTHq~--iedia~lr~iPn-l~v 500 (673)
+ ..+.++|-.|. +-|..| +|.+.-. + ..+.++.|--.-.-+.+|-|||- +-| .++.-.|+ .+|
T Consensus 83 r-hglf~SYEAF~~iv~sM~~Q~~Kwl~~~~e~~wR~~~~Sln~l~TS~~WrqdhNg~SHQdPgf~~-~~~~k~~~~~Rv 160 (179)
T pfam03894 83 R-HGIFASYEAFLHIVDSMLNQHAKWLKATREIPWRKDISSLNYLTSSTVWRQDHNGFSHQDPGFLT-VLLNKKPDVVRV 160 (179)
T ss_pred C-CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEHHHHHCCCCCCCCCCCCHHHH-HHHHCCCCEEEE
T ss_conf 7-66531099999999999999999999977377888875332200002331466877667962999-998538880578
Q ss_pred EEECCHHHHHHHHHHHHC
Q ss_conf 211201245777765202
Q gi|254780655|r 501 LRPADSIETLECWQVALK 518 (673)
Q Consensus 501 ~~P~d~~E~~~~~~~al~ 518 (673)
+-|.|++.+..++..++.
T Consensus 161 ylP~DaN~lLa~~~~clr 178 (179)
T pfam03894 161 YLPPDANTLLAVFDRCLQ 178 (179)
T ss_pred ECCCCCCHHHHHHHHHHC
T ss_conf 889970549999999974
No 138
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=97.27 E-value=0.0035 Score=42.10 Aligned_cols=119 Identities=20% Similarity=0.206 Sum_probs=77.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC-----CCCCC
Q ss_conf 6314799999999999985342688767845999843621143445578876522022330699962763-----22322
Q gi|254780655|r 131 PLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGI-----SIDGP 205 (673)
Q Consensus 131 ~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~-----si~~~ 205 (673)
..+-..+.|.|+..|.|.++. |-+|+++-|||... ..-+-++..|...+.|-+++++||.-+ |-|+.
T Consensus 68 ~f~~aaa~a~Gi~~a~k~~~~-------~~~Vv~~~GDG~~~-dIG~~~l~ha~~Rn~~i~~iv~DNe~Y~nTGgQ~S~a 139 (298)
T PRK11865 68 AFENAAAVASGIERAVKALGK-------KVNVVAFGGDGGTA-DIGFQALSGAMERGHNIVYIMYDNEAYMNTGIQRSGS 139 (298)
T ss_pred HHCCCHHHHHHHHHHHHHHCC-------CEEEEEEECCCHHH-HHHHHHHHHHHHCCCCEEEEEECCEEEECCCCCCCCC
T ss_conf 320336789999999998457-------80799995685265-4217889999982998599998471210368866889
Q ss_pred CCC-----------------CCCCCHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHHCCCCHHHHHCCC
Q ss_conf 355-----------------678217998864144444-4444406788888887511022102220133
Q gi|254780655|r 206 ISL-----------------ADSTDQYARFRASGWNTL-SVNGHDHHAITSTLRKAQLSDKPTMIACETV 257 (673)
Q Consensus 206 ~~~-----------------~~~~~~~~~~~a~Gw~~~-~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T~ 257 (673)
|.. ...-|+.....++|-.+. .+---+...+.+.+++|...+.|++|++.+.
T Consensus 140 Tp~Ga~t~ttp~Gk~~~g~~~~kkdl~~ia~a~g~~YVA~~s~~~~~~l~~~i~kA~~~~G~s~i~v~sP 209 (298)
T PRK11865 140 TPFGASTTTSPAGKYSRGEDRPKKDMPLIMAAHGIPYVATASIGYPEDFMKKVKKAAEVDGPAYIQVLQP 209 (298)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 9786531037898666666668768999999829988999825799999999999980899879999788
No 139
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=97.24 E-value=0.0033 Score=42.28 Aligned_cols=42 Identities=14% Similarity=0.217 Sum_probs=21.6
Q ss_pred CHHHHHHHCC-CCCCCCCCCCH-HHHHHHHHHHHHCCCCHHHHH
Q ss_conf 1799886414-44444444406-788888887511022102220
Q gi|254780655|r 213 DQYARFRASG-WNTLSVNGHDH-HAITSTLRKAQLSDKPTMIAC 254 (673)
Q Consensus 213 ~~~~~~~a~G-w~~~~vdG~d~-~~i~~a~~~ak~~~kP~~I~~ 254 (673)
|+..-|+.+- |.+.--+..++ +.+.+|++.|....+|++|..
T Consensus 118 d~~~~~~~vtK~~~~v~~~~~~~~~i~rA~~~A~~~rGPV~i~i 161 (589)
T PRK07525 118 EQMPMFQEMTKYQEEVRDPSRMAEVLNRVFDKAKRESGPAQINI 161 (589)
T ss_pred CHHHHHHHHHCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 29888656611689938834569999999999983899869967
No 140
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=97.05 E-value=0.012 Score=38.21 Aligned_cols=115 Identities=22% Similarity=0.211 Sum_probs=51.0
Q ss_pred CHHHCCCCCCCHHHH---HHHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEE-CCCCCCCCC------
Q ss_conf 001003257620023---56787998728876220010--035553001245411110000130-245433333------
Q gi|254780655|r 410 FSGRYLHYGVREHAM---AAAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHV-LTHDSIGLG------ 477 (673)
Q Consensus 410 ~p~r~i~~GIaE~~~---~~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v-~th~gi~~G------ 477 (673)
.|++|+..+- ..| +..|.|.++...-+++++.- ..|+- .-..+-.+.-.++|++++ +..+|.+.-
T Consensus 388 ~~~~~~~~~~--G~mG~~lpaAiGaalA~p~~~vv~i~GDGsf~m-~~~EL~Ta~r~~lpi~ivV~NN~~yg~i~~~~~~ 464 (521)
T PRK07092 388 RQGSFYTMAS--GGLGYGLPAAVGVALAQPGRRVIGLIGDGSANY-SIQALWSAAQLKLPVTFVILNNGRYGALRWFAPV 464 (521)
T ss_pred CCCCEEECCC--CCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHH-HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHH
T ss_conf 9983785577--764432689999998399984999984459860-1999999999688948999978712799999998
Q ss_pred ---CCCC-HHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf ---3331-01000222101110122112112012457777652025678349995
Q gi|254780655|r 478 ---EDGP-THQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSL 528 (673)
Q Consensus 478 ---~DGp-THq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~ 528 (673)
.+.+ |.-+--|.+.+----|+.-++..+..|+..+++.|++. ++|++|-.
T Consensus 465 ~~~~~~~~~~l~~~df~~iA~a~G~~g~~V~t~~eL~~al~~A~~~-~gP~lIeV 518 (521)
T PRK07092 465 FGVRDVPGLDLPGLDFVALARGYGCEAVRVSDAAELADALARALAA-DRPVLVEV 518 (521)
T ss_pred HCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHC-CCCEEEEE
T ss_conf 4689977674999999999997799799979999999999999838-99789999
No 141
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=97.03 E-value=0.0085 Score=39.29 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=12.7
Q ss_pred CCCH-HHHHHHHHHHHHC-CCCHHHHH
Q ss_conf 4406-7888888875110-22102220
Q gi|254780655|r 230 GHDH-HAITSTLRKAQLS-DKPTMIAC 254 (673)
Q Consensus 230 G~d~-~~i~~a~~~ak~~-~kP~~I~~ 254 (673)
-.++ +.+.+|++.|... .+|++|..
T Consensus 135 ~~~~~~~l~~A~~~A~~grpGPV~l~i 161 (574)
T PRK07979 135 TEDIPQVLKKAFWLAASGRPGPVVVDL 161 (574)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCEEECC
T ss_conf 455789999999998538996556257
No 142
>pfam09363 XFP_C XFP C-terminal domain. Bacterial enzyme splits fructose-6-P and/or xylulose-5-P with the aid of inorganic phosphate into either acetyl-P and erythrose-4-P and/or acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22.
Probab=96.98 E-value=0.037 Score=34.69 Aligned_cols=130 Identities=14% Similarity=0.108 Sum_probs=85.7
Q ss_pred CCCCCCCCCCEE--EEE---CCCCCEEEEECCHHH-HHHHHHHHHHHHC--CCCEEEEECCCCCHHCC---C----CHHH
Q ss_conf 532212347379--985---699729999526889-9999999999973--99439985746581000---8----6889
Q gi|254780655|r 541 ESNNLCALGAYD--YIS---TPNAQVTIFSSGSEL-KIAVEACEILSSR--NISTRVVSVPCFELFFE---Q----SDSY 605 (673)
Q Consensus 541 ~~~~~~~~G~~~--~~~---~~~~dv~iia~G~~v-~~al~aa~~L~~~--Gi~~~Vi~~~s~k~ld~---~----~~~~ 605 (673)
+....+..|..+ +.. .+.+||++.++|... .+++.|+.+|+++ .+++||||+--+-.|.. . +++.
T Consensus 12 eA~~hc~~G~~iW~wAS~d~g~ePDVVlA~aGd~pT~E~LAA~~lLr~~~P~lkiR~VNVvDLm~L~~~~~hphgLsd~~ 91 (203)
T pfam09363 12 EAIAHCTKGLGIWDWASNDDGEEPDVVMACAGDVPTLETLAAVDLLREHFPDLKIRVVNVVDLMKLQPPSEHPHGLSDRE 91 (203)
T ss_pred HHHHHHHCCCEEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEHHHHCCCCCCCCCCCHHH
T ss_conf 99999975870897434799999999998178721199999999999869875699999767132178888998899789
Q ss_pred HHHHCCCCCEEEEECCCCHHHHHHHH-CC-CCCEEEECCCCCCCC---HHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99643679779997286027899984-57-981898357767688---8899998099989999999998
Q gi|254780655|r 606 RAQIIGSSPIKIAIEAGLRQGWDAFI-GS-DGSFIGMQGFGASGS---CDLLYQHFGINAIAIVDMVERK 670 (673)
Q Consensus 606 ~~~il~~~~~~vtiE~g~~~g~~~~~-~~-~~~~igid~Fg~sg~---~~el~~~~Gld~~~I~~~i~~~ 670 (673)
..+++...+++|.-=.|...-+.+++ +. +...+-|.+|-+.|+ +=++.-.-++|-=+++..+.+.
T Consensus 92 Fd~lFT~DkPViF~fHGYp~lI~~L~~~R~n~~n~hV~GY~EeGttTTPFDM~v~N~~dRfhLa~dai~~ 161 (203)
T pfam09363 92 FDSLFTTDKPVIFAFHGYPWLIHRLTYRRTNHHNLHVRGYKEEGTTTTPFDMRVLNELDRFHLAIDAIDR 161 (203)
T ss_pred HHHHCCCCCCEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9975679997799817988899998557899884578710017887871678877076689999999996
No 143
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase; InterPro: IPR011895 The oxidative decarboxylation of pyruvate to acetyl-CoA, a central step in energy metabolism, can occur by two different mechanisms . In mitochondria and aerobic bacteria this reaction is catalysed by the multienzyme complex pyruvate dehydrogenase using NAD as electron acceptor. In anaerobic organisms, however, this reaction is reversibly catalysed by a single enzyme using either ferrodoxin or flavodoxin as the electron acceptor. Pyruvate:ferrodoxin/flavodoxin reductases (PFORs) in this entry occur in both obligately and facultatively anaerobic bacteria and also some eukaryotic microorganisms. These proteins are single-chain enzymes containing a thiamin pyrophosphate cofactor for the cleavage of carbon-carbon bonds next to a carbonyl group, and iron-sulphur clusters for electron transfer. The Desulfovibrio africanus enzyme is currently the only PFOR whose three dimensional structure is known , . It is a homodimer where each subunit contains one thiamin pyrophosphate cofactor and two ferrodoxin-like 4Fe-S clusters and an atypical 4Fe-S cluster. Each monomer is composed of seven domains - domains I, II and VI make intersubunit contacts, while domains III, IV and V are located at the suface of the dimer, and domain VII forms a long arm extending over the other subunit. The cofactor is bound at the interface of domains I and VI and is proximal to the atypical 4Fe-S bound by domain VI, while the ferrodoxin-like 4Fe-S clusters are bound by domain V. Comparison of this enzyme with the multi-chain PFORs shows a correspondance between the domains in this enzyme and the subunits of the multi-chain enzymes.; GO: 0005506 iron ion binding, 0016903 oxidoreductase activity acting on the aldehyde or oxo group of donors, 0006118 electron transport.
Probab=96.97 E-value=0.004 Score=41.68 Aligned_cols=61 Identities=21% Similarity=0.271 Sum_probs=42.4
Q ss_pred CCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCCCCCEEEEE
Q ss_conf 6997299995268899999999999973994399857465810008688999643679779997
Q gi|254780655|r 556 TPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKIAI 619 (673)
Q Consensus 556 ~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vti 619 (673)
.++.+=+||+-||..+.+.|+-+-|+++|-++.+|.||=.+||+. ++-.+-|+.+...|+|
T Consensus 262 apdAE~vIi~MGSvaeTieEtvdyL~~kG~KvGllkVrLYRPF~~---~~F~~~lP~svK~IAV 322 (1194)
T TIGR02176 262 APDAERVIIAMGSVAETIEETVDYLRSKGEKVGLLKVRLYRPFSA---ETFLAALPKSVKRIAV 322 (1194)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCH---HHHHHHCCCCCCEEEE
T ss_conf 702031044058566789999999972893276888751279858---9999842411012221
No 144
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=96.89 E-value=0.0055 Score=40.70 Aligned_cols=32 Identities=16% Similarity=0.065 Sum_probs=15.8
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 972999952688999999999999739943998
Q gi|254780655|r 558 NAQVTIFSSGSELKIAVEACEILSSRNISTRVV 590 (673)
Q Consensus 558 ~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi 590 (673)
..-|.|++=|+....+-|-. ...++++.+.+|
T Consensus 466 r~Vv~i~GDGsf~mt~qEL~-Tavr~~lpi~iv 497 (612)
T PRK07789 466 KEVWAIDGDGCFQMTNQELA-TCAIEGIPIKVA 497 (612)
T ss_pred CCEEEEECCHHHHHHHHHHH-HHHHHCCCCEEE
T ss_conf 93899985368633299999-999968994899
No 145
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=96.88 E-value=0.0033 Score=42.28 Aligned_cols=119 Identities=22% Similarity=0.218 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEEE--EECCCCCC-CHHHHHHHHHHHHHCC--CCEEEEEECCCCCCCCCCCCC--
Q ss_conf 9999999999985342688767845999--84362114-3445578876522022--330699962763223223556--
Q gi|254780655|r 137 ANAVGMAIAERKLREEFGDVLIDHYTYV--LVGDGCLM-EGISQEAISFAGHLGL--SKLIVLWDNNGISIDGPISLA-- 209 (673)
Q Consensus 137 s~a~G~A~a~k~~~~~~~~~~~d~~v~~--iiGDG~l~-eG~~~EAl~~A~~~~l--~nli~i~d~N~~si~~~~~~~-- 209 (673)
+.+.|.+.|.....+... ..++.+ +-||++.. .|+.+|.++++...+- .-.|=|+=||++.-.++....
T Consensus 120 PVv~G~~RAkQ~~~~~~~----~~kvlpiliHGDAAfaGQGvv~Etl~ls~l~gy~~GGtiHiivNNQIGFTT~p~~~Rs 195 (265)
T cd02016 120 PVVMGKTRAKQDYRGDGE----RDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRS 195 (265)
T ss_pred CEECCHHHHHHHHHCCCC----CCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCEEECCCCHHHCC
T ss_conf 774440565677644877----6637899996661114565899876663389985476699998074100258134045
Q ss_pred --CCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH----HHCCCCHHHHHCCCCCCCC
Q ss_conf --7821799886414444444444067888888875----1102210222013345557
Q gi|254780655|r 210 --DSTDQYARFRASGWNTLSVNGHDHHAITSTLRKA----QLSDKPTMIACETVIGFGS 262 (673)
Q Consensus 210 --~~~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~a----k~~~kP~~I~~~T~kG~G~ 262 (673)
...|+++ .++-.++.|||.|++++..|.+-| ++-.|-++|-.-...-+|.
T Consensus 196 s~Y~tDiaK---~~~~Pi~HVNgddpeav~~a~~lA~~yR~~F~kDvvIDlvcYRr~GH 251 (265)
T cd02016 196 SPYCTDVAK---MIGAPIFHVNGDDPEAVVRATRLALEYRQKFKKDVVIDLVCYRRHGH 251 (265)
T ss_pred CCCCHHHHH---HHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC
T ss_conf 764002688---86798899768998999999999999999869987999787345687
No 146
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=96.87 E-value=0.0041 Score=41.64 Aligned_cols=42 Identities=21% Similarity=0.258 Sum_probs=19.0
Q ss_pred CCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 34737998569972999952688999999999999739943998
Q gi|254780655|r 547 ALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVV 590 (673)
Q Consensus 547 ~~G~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi 590 (673)
.+|+. +.+.+.+-++|++=|+.....-| -....++++.+.+|
T Consensus 427 AiGA~-lA~p~r~Vv~i~GDG~f~m~~qE-L~Ta~~~~lpv~iv 468 (566)
T PRK07282 427 AIGAK-IANPDKEVILFVGDGGFQMTNQE-LAILNIYKVPIKVV 468 (566)
T ss_pred HHHHH-HHCCCCCEEEEECCCHHHCCHHH-HHHHHHHCCCCEEE
T ss_conf 99999-82899968999668055414899-99999958996899
No 147
>TIGR02418 acolac_catab acetolactate synthase, catabolic; InterPro: IPR012782 Acetolactate synthase is a thiamin pyrophosphate-dependent enzyme that combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. It exists in two distinct forms that have different properties, though they are clearly related , . The biosynthetic form, found in plants, fungi and bacteria, is involved in the biosynthesis of branched-chain amino acids and contains non-catalytic FAD. The catabolic form is found only in some bacteria, participates in butanediol fermentation, and does not contain FAD. This entry represents the catabolic form of acetolactate synthase, generally found in species that posses acetolactate decarboxylase, which is often encoded in the same operon. The enzyme is thought to be a homotetramer, though this has not conclusively been shown. Each monomer consists of three distinct domains, designated, starting from the N-terminus, as alpha, beta and gamma . The core of the alpha and gamma domains is a six-stranded parallel beta sheet surrounded by alpha helices, while the the beta domain forms a double Rossman fold. The thiamin pyrophosphate cofactor has an unusual conformation that has not been seen in other enzymes using this cofactor, including the biosynthetic form of acetolactate synthase. The active site is located in a funnel at the dimer interface, bordered by residues from all three domains.; GO: 0000287 magnesium ion binding, 0003984 acetolactate synthase activity, 0030976 thiamin pyrophosphate binding, 0050660 FAD binding.
Probab=96.86 E-value=0.0043 Score=41.47 Aligned_cols=23 Identities=43% Similarity=0.590 Sum_probs=11.5
Q ss_pred CHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 688999999999999739943998574
Q gi|254780655|r 567 GSELKIAVEACEILSSRNISTRVVSVP 593 (673)
Q Consensus 567 G~~v~~al~aa~~L~~~Gi~~~Vi~~~ 593 (673)
|.-+++|+.|+ .|+- +.+|||+.
T Consensus 421 GVALPWAI~Aa-LlrP---~~KVVSVS 443 (553)
T TIGR02418 421 GVALPWAIGAA-LLRP---NTKVVSVS 443 (553)
T ss_pred HHHHHHHHHHH-HHCC---CCEEEEEE
T ss_conf 11218999999-7388---97589987
No 148
>PRK08199 acetolactate synthase 2 catalytic subunit; Validated
Probab=96.85 E-value=0.0043 Score=41.46 Aligned_cols=100 Identities=15% Similarity=0.111 Sum_probs=50.0
Q ss_pred HHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCCC-------CCCCCHH---HHCCCCCHHH
Q ss_conf 787998728876220010--0355530012454111100001302-4543333-------3333101---0002221011
Q gi|254780655|r 427 AMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHVL-THDSIGL-------GEDGPTH---QPVEHLAALR 493 (673)
Q Consensus 427 ~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~~-------G~DGpTH---q~iedia~lr 493 (673)
.|.|.++...-+|+++.- ..|. +.-..+-.+...++|++++. ..+|.+. ...|..+ .+--|.+.+-
T Consensus 417 aAiGa~la~p~r~Vv~i~GDG~f~-m~~~eL~Ta~~~~lpv~ivV~NN~~yg~i~~~q~~~~~~r~~~~~l~~~df~~lA 495 (553)
T PRK08199 417 AAIAAKLLYPERTVVAFAGDGCFL-MNGQELATAVQYGLPIIVIVVNNGMYGTIRMHQEREYPGRVSGTDLTNPDFAALA 495 (553)
T ss_pred HHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 999999829998189998862765-4199999999978796899996895179999999746996455869998999999
Q ss_pred HHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 10122112112012457777652025678349995
Q gi|254780655|r 494 AIPDLLVLRPADSIETLECWQVALKEKNRPSVLSL 528 (673)
Q Consensus 494 ~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~ 528 (673)
---+..-++..+..|+..+++.|+.. ++|+.|-.
T Consensus 496 ~a~G~~~~~V~~~~el~~al~~a~~~-~gp~lIeV 529 (553)
T PRK08199 496 RAYGGHGERVERTEDFAPAFERALAS-GKPALIEI 529 (553)
T ss_pred HHCCCEEEEECCHHHHHHHHHHHHHC-CCCEEEEE
T ss_conf 97799799969999999999999858-99599999
No 149
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=96.80 E-value=0.0095 Score=38.97 Aligned_cols=111 Identities=16% Similarity=0.097 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC-CCHHHHHHHHHHHHHCCCCEEEEEECCCCC-----CCCCC
Q ss_conf 147999999999999853426887678459998436211-434455788765220223306999627632-----23223
Q gi|254780655|r 133 GQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCL-MEGISQEAISFAGHLGLSKLIVLWDNNGIS-----IDGPI 206 (673)
Q Consensus 133 G~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l-~eG~~~EAl~~A~~~~l~nli~i~d~N~~s-----i~~~~ 206 (673)
|-.++.|.|+.+|.. |-.|+++-|||++ ..|. .-+.+|+..+.|-.++++||+-+. .|..+
T Consensus 71 GRala~AtGiK~AnP-----------dl~Viv~~GDGD~~aIGg--nH~iHAaRRN~dit~Iv~NN~iYGmTgGQ~SPTT 137 (281)
T PRK09628 71 GRAVAYATGIKLANP-----------SKHVIVVSGDGDGLAIGG--NHTIHGCRRNIDLNHILINNFIYGLTNSQTSPTT 137 (281)
T ss_pred CCHHHHHHHHHHHCC-----------CCEEEEEECCCHHHHCHH--HHHHHHHHHCCCCEEEEECCEEEECCCCCCCCCC
T ss_conf 250888999998689-----------976999815740420308--8999999808992899987772303788569899
Q ss_pred CCC------------CCCCHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf 556------------78217998864144444-444440678888888751102210222013
Q gi|254780655|r 207 SLA------------DSTDQYARFRASGWNTL-SVNGHDHHAITSTLRKAQLSDKPTMIACET 256 (673)
Q Consensus 207 ~~~------------~~~~~~~~~~a~Gw~~~-~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T 256 (673)
... .+-|..+...+.|-.++ +.--.|.+.+.+.+++|...+.+++|++.+
T Consensus 138 p~G~~T~TtP~G~~e~p~d~~~la~aaGatfVAR~~~~~~~~l~~~ik~Ai~hkGfS~Vevls 200 (281)
T PRK09628 138 PKGMWTVTAQWGNIDPNFDACKLATAAGASFVARESVIDPKKLEKLLVKGFSHKGFSFFDVFS 200 (281)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 998756668999878996999999876997899870489999999999996599967999956
No 150
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=96.76 E-value=0.0077 Score=39.64 Aligned_cols=32 Identities=16% Similarity=0.061 Sum_probs=17.1
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 972999952688999999999999739943998
Q gi|254780655|r 558 NAQVTIFSSGSELKIAVEACEILSSRNISTRVV 590 (673)
Q Consensus 558 ~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi 590 (673)
..-|.|++=|+.....-+- ....++++.+.+|
T Consensus 434 r~vv~i~GDG~f~m~~~EL-~Ta~r~~lpv~iv 465 (560)
T PRK08527 434 KVVINFTGDGSILMNIQEL-MTAVEYGIPVINI 465 (560)
T ss_pred CCEEEEECCHHHHHHHHHH-HHHHHHCCCCEEE
T ss_conf 9689997817986659999-9999968895899
No 151
>PRK07064 hypothetical protein; Provisional
Probab=96.74 E-value=0.0056 Score=40.64 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=16.3
Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 9972999952688999999999999739943998
Q gi|254780655|r 557 PNAQVTIFSSGSELKIAVEACEILSSRNISTRVV 590 (673)
Q Consensus 557 ~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi 590 (673)
+..-+.|++=|+....+.+. ..+.++++.+.+|
T Consensus 423 ~~~vv~i~GDGsf~m~~~eL-~Ta~r~~lpi~iv 455 (544)
T PRK07064 423 GRKTVCLVGDGGLMLNLGEL-ATAVQENANMVIV 455 (544)
T ss_pred CCCEEEEECHHHHHHHHHHH-HHHHHHCCCCEEE
T ss_conf 99789998517977659999-9999968690899
No 152
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=96.73 E-value=0.019 Score=36.81 Aligned_cols=119 Identities=17% Similarity=0.200 Sum_probs=69.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC-CHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 987306888631479999999999998534268876784599984362114-3445578876522022330699962763
Q gi|254780655|r 122 CAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLM-EGISQEAISFAGHLGLSKLIVLWDNNGI 200 (673)
Q Consensus 122 ~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~-eG~~~EAl~~A~~~~l~nli~i~d~N~~ 200 (673)
+.+++... |-.++.|.|+.+|.. |-.||++-|||+.. .| ..-+.+|...++|-.++++||.-+
T Consensus 63 ~~~~ht~H---GRa~~~AtGiK~anP-----------dl~Viv~~GDGD~~~IG--gnH~iHA~rRN~dit~iv~nN~iY 126 (280)
T PRK11867 63 TYGFHTIH---GRALAFATGLKLANP-----------DLTVIVVTGDGDALAIG--GNHFIHALRRNIDITIILFNNQIY 126 (280)
T ss_pred ECCCCCCC---CCCHHHHHHHHHHCC-----------CCEEEEEECCCCHHHCH--HHHHHHHHHHCCCCEEEEECCEEE
T ss_conf 36713245---760789999987689-----------97699992266032023--888999998089818999888201
Q ss_pred CC-----CCCCCCC------------CCCCHHHHHHHCCCCCCC-CCCCCHHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf 22-----3223556------------782179988641444444-44440678888888751102210222013
Q gi|254780655|r 201 SI-----DGPISLA------------DSTDQYARFRASGWNTLS-VNGHDHHAITSTLRKAQLSDKPTMIACET 256 (673)
Q Consensus 201 si-----~~~~~~~------------~~~~~~~~~~a~Gw~~~~-vdG~d~~~i~~a~~~ak~~~kP~~I~~~T 256 (673)
.+ |..+... .+-|..+...+.|-.++. .-.-|.+.+.+.+++|-..+.+++|++..
T Consensus 127 GlT~GQ~SpTt~~G~~t~ttP~G~~~~p~n~~~la~~aGatfVAR~~~~~~~~l~~~ik~A~~hkGfs~Vevls 200 (280)
T PRK11867 127 GLTKGQYSPTSPVGFVTKTTPYGSIDPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAINHKGFSFVEILQ 200 (280)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 02578558899998876778899887997999999977993798640278999999999996699967999967
No 153
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=96.72 E-value=0.025 Score=35.93 Aligned_cols=33 Identities=18% Similarity=0.112 Sum_probs=15.7
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9729999526889999999999997399439985
Q gi|254780655|r 558 NAQVTIFSSGSELKIAVEACEILSSRNISTRVVS 591 (673)
Q Consensus 558 ~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~ 591 (673)
.+-|.|++=|+.....-| -....++++.+.||-
T Consensus 435 ~~Vv~i~GDGsf~m~~~E-L~Ta~r~~lpi~ivV 467 (554)
T TIGR03254 435 KPVVALEGDSAFGFSGME-VETICRYNLPVCVVI 467 (554)
T ss_pred CEEEEEECCCCCCCCHHH-HHHHHHHCCCCEEEE
T ss_conf 818999758510304899-999999689958999
No 154
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=96.71 E-value=0.011 Score=38.41 Aligned_cols=111 Identities=21% Similarity=0.213 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC-CCCCHHHHHHHHHHHHHCCCCEEEEEECCCC-----CCCCCC
Q ss_conf 1479999999999998534268876784599984362-1143445578876522022330699962763-----223223
Q gi|254780655|r 133 GQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDG-CLMEGISQEAISFAGHLGLSKLIVLWDNNGI-----SIDGPI 206 (673)
Q Consensus 133 G~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG-~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~-----si~~~~ 206 (673)
|-.++.|.|+.+|.+.| .||++-||| ....| .-.+.++...+.|-.++++||.-+ |.|+.+
T Consensus 73 gra~a~atGik~A~~~l-----------~Viv~gGDG~~~dIG--~~~l~ha~~Rn~dit~iv~DNevYgnTggQ~S~tT 139 (294)
T COG1013 73 GRAAAVATGIKLANPAL-----------SVIVIGGDGDAYDIG--GNHLIHALRRNHDITYIVVDNEVYGNTGGQASPTT 139 (294)
T ss_pred CCCHHHHHHHHHHHHCC-----------EEEEEECCCHHHHCC--HHHHHHHHHCCCCEEEEEECCEECCCCCCCCCCCC
T ss_conf 56234577799751077-----------499990560775410--16778999707985999977700456787358898
Q ss_pred CC------------C-CCCCHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf 55------------6-78217998864144444-444440678888888751102210222013
Q gi|254780655|r 207 SL------------A-DSTDQYARFRASGWNTL-SVNGHDHHAITSTLRKAQLSDKPTMIACET 256 (673)
Q Consensus 207 ~~------------~-~~~~~~~~~~a~Gw~~~-~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T 256 (673)
.. . ..-|+....-++|-.+. ++-=-++..+.+.+.+|.....|++|++.+
T Consensus 140 p~G~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~~A~~~~Gps~I~v~s 203 (294)
T COG1013 140 PKGAKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAEHKGPSFIDVLS 203 (294)
T ss_pred CCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 6887603368987767877999999876997699970359899999999998567976999966
No 155
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=96.69 E-value=0.0054 Score=40.75 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=14.2
Q ss_pred CCCCH-HHHHHHHHHHHHC-CCCHHHHH
Q ss_conf 44406-7888888875110-22102220
Q gi|254780655|r 229 NGHDH-HAITSTLRKAQLS-DKPTMIAC 254 (673)
Q Consensus 229 dG~d~-~~i~~a~~~ak~~-~kP~~I~~ 254 (673)
+.+++ +.+.+|++.|... .+|++|..
T Consensus 134 ~~~~i~~~l~~A~~~A~~~rpGPV~i~i 161 (574)
T PRK06882 134 KAEDIPSTIKKAFYIASTGRPGPVVIDI 161 (574)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 9999999999999998638998779982
No 156
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=96.68 E-value=0.007 Score=39.90 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=16.4
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 972999952688999999999999739943998
Q gi|254780655|r 558 NAQVTIFSSGSELKIAVEACEILSSRNISTRVV 590 (673)
Q Consensus 558 ~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi 590 (673)
..-|.|++=|+....+-+- ....++++.+.+|
T Consensus 443 r~Vv~i~GDG~f~m~~qEL-~Ta~r~~lpv~iv 474 (571)
T PRK07710 443 ELVVAIVGDAGFQMTLQEL-SVLKEHSLPVKVF 474 (571)
T ss_pred CEEEEEECCHHHHCCHHHH-HHHHHHCCCCEEE
T ss_conf 8389997780564369999-9999959993899
No 157
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=96.67 E-value=0.023 Score=36.24 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=20.4
Q ss_pred CHHHHHHHC-CCCCCCCCCCCH-HHHHHHHHHHHHC-CCCHHHHH
Q ss_conf 179988641-444444444406-7888888875110-22102220
Q gi|254780655|r 213 DQYARFRAS-GWNTLSVNGHDH-HAITSTLRKAQLS-DKPTMIAC 254 (673)
Q Consensus 213 ~~~~~~~a~-Gw~~~~vdG~d~-~~i~~a~~~ak~~-~kP~~I~~ 254 (673)
|....|+.. -|....-+..+. +.|.+|++.|... .+|+.|..
T Consensus 127 d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~r~GPV~l~i 171 (581)
T PRK06112 127 DHIALFQSCTKWVRRVDVAERIDDYVDQAFAAACSGRPGPVVLLL 171 (581)
T ss_pred CHHHHHHHHHCEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 487776545247887799999999999999999656998879981
No 158
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=96.57 E-value=0.024 Score=36.00 Aligned_cols=119 Identities=16% Similarity=0.119 Sum_probs=70.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC-CCHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 98730688863147999999999999853426887678459998436211-43445578876522022330699962763
Q gi|254780655|r 122 CAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCL-MEGISQEAISFAGHLGLSKLIVLWDNNGI 200 (673)
Q Consensus 122 ~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l-~eG~~~EAl~~A~~~~l~nli~i~d~N~~ 200 (673)
+.+++... |-.++.|.|+.+|.. |-.|+++-|||++ .+|. ..+.+|...+.|-.++++||.-+
T Consensus 62 ~~~~h~lH---GRalp~AtGiK~AnP-----------dL~Viv~~GDGD~~~IG~--nh~ihA~rRN~dit~iv~nN~iY 125 (286)
T PRK11866 62 TYGIHGIH---GRLLPIATGVKWANP-----------KLTVIAYGGDGDGYGIGL--QHLIHAARRNVDITYIVSNNQVY 125 (286)
T ss_pred CCCEEHHH---CCCHHHHHHHHHHCC-----------CCEEEEEECCCCHHCCHH--HHHHHHHHHCCCCEEEEECCHHH
T ss_conf 26240221---250688999987589-----------977999926873204238--89999998489937999887432
Q ss_pred C-----CCCCCCCC------------CCCCHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf 2-----23223556------------78217998864144444-444440678888888751102210222013
Q gi|254780655|r 201 S-----IDGPISLA------------DSTDQYARFRASGWNTL-SVNGHDHHAITSTLRKAQLSDKPTMIACET 256 (673)
Q Consensus 201 s-----i~~~~~~~------------~~~~~~~~~~a~Gw~~~-~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T 256 (673)
. .|+.+... .+-|......+.|-.++ +.--.|.+.+.+.+++|...+.+++|++..
T Consensus 126 GlTgGQ~SpTTp~G~~T~ttP~G~~~~p~np~~la~a~gatfVAR~~~~~~~~l~~~ik~Ai~hkGfs~VeVls 199 (286)
T PRK11866 126 GLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKKAIKHKGFSFIDVLS 199 (286)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 14789689899998857647999877897999999987998899770479999999999997799967999978
No 159
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=96.55 E-value=0.028 Score=35.54 Aligned_cols=32 Identities=22% Similarity=0.157 Sum_probs=14.9
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 972999952688999999999999739943998
Q gi|254780655|r 558 NAQVTIFSSGSELKIAVEACEILSSRNISTRVV 590 (673)
Q Consensus 558 ~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi 590 (673)
..-|.|++=|+.....-|-. ...++++.+.+|
T Consensus 453 r~Vv~i~GDGsf~mt~qEL~-Ta~r~~Lpv~iv 484 (615)
T PRK07418 453 EQVICIAGDASFLMNIQELG-TLAQYGIPVKTV 484 (615)
T ss_pred CCEEEEECCHHHHHHHHHHH-HHHHHCCCCEEE
T ss_conf 96899984438766499999-999968996899
No 160
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=96.54 E-value=0.0051 Score=40.91 Aligned_cols=42 Identities=12% Similarity=0.142 Sum_probs=21.8
Q ss_pred CHHHHHHHCC-CCCCCCCCCCH-HHHHHHHHHHHHCCCCHHHHH
Q ss_conf 1799886414-44444444406-788888887511022102220
Q gi|254780655|r 213 DQYARFRASG-WNTLSVNGHDH-HAITSTLRKAQLSDKPTMIAC 254 (673)
Q Consensus 213 ~~~~~~~a~G-w~~~~vdG~d~-~~i~~a~~~ak~~~kP~~I~~ 254 (673)
|+...|+.+- |.+.--+..++ +.+.+|++.|....+|++|..
T Consensus 114 d~~~~~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~rGPV~l~i 157 (579)
T TIGR03457 114 DQLPMFQEFTKYQGHVRHPSRMAEVLNRCFERAWREMGPAQLNI 157 (579)
T ss_pred CHHHHHHHHEEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEECC
T ss_conf 18888555524689969999999999999999972899779767
No 161
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=96.51 E-value=0.0072 Score=39.84 Aligned_cols=33 Identities=12% Similarity=0.261 Sum_probs=16.7
Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 9972999952688999999999999739943998
Q gi|254780655|r 557 PNAQVTIFSSGSELKIAVEACEILSSRNISTRVV 590 (673)
Q Consensus 557 ~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi 590 (673)
+..-+.|++=|+......| -....++++.+.+|
T Consensus 419 ~r~Vv~i~GDGsf~m~~~E-L~Ta~r~~lpv~iv 451 (548)
T PRK08978 419 DDTVICVSGDGSFMMNVQE-LGTIKRKQLPVKIV 451 (548)
T ss_pred CCCEEEEECCHHHHHHHHH-HHHHHHHCCCCEEE
T ss_conf 9988999895076452999-99999958995899
No 162
>PRK05858 hypothetical protein; Provisional
Probab=96.51 E-value=0.0061 Score=40.33 Aligned_cols=21 Identities=10% Similarity=0.153 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHC-CCCHHHHH
Q ss_conf 7888888875110-22102220
Q gi|254780655|r 234 HAITSTLRKAQLS-DKPTMIAC 254 (673)
Q Consensus 234 ~~i~~a~~~ak~~-~kP~~I~~ 254 (673)
..|.+|++.|... .+|+.|..
T Consensus 142 ~~l~~A~~~A~~~~~GPV~l~i 163 (543)
T PRK05858 142 RLVDQALQAAVSAHSGVVFVDF 163 (543)
T ss_pred HHHHHHHHHHHHCCCCEEEEEE
T ss_conf 9999999998628997399993
No 163
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=96.47 E-value=0.021 Score=36.54 Aligned_cols=112 Identities=21% Similarity=0.202 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC-----CCCCCCC
Q ss_conf 14799999999999985342688767845999843621143445578876522022330699962763-----2232235
Q gi|254780655|r 133 GQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGI-----SIDGPIS 207 (673)
Q Consensus 133 G~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~-----si~~~~~ 207 (673)
|-.++.|.|+.+|.. |-+|+++-|||+.. +.-...+.+|...+.|-.++++||.-+ |.|..+.
T Consensus 73 GRa~~~AtGiK~anp-----------dl~Vi~~~GDGd~~-~IG~~hl~ha~rRN~dit~Iv~nN~vYglTgGQ~SpTtp 140 (306)
T PRK05778 73 GRAIAFATGAKLANP-----------DLKVIVVGGDGDLA-SIGGGHFIHAGRRNVDITVIVENNGVYGLTKGQASPTTP 140 (306)
T ss_pred CCHHHHHHHHHHHCC-----------CCEEEEEECCCCHH-CCCHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCC
T ss_conf 441889989987688-----------98699993576121-131787899998389946999876332336886698999
Q ss_pred C------------CCCCCHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf 5------------678217998864144444-444440678888888751102210222013
Q gi|254780655|r 208 L------------ADSTDQYARFRASGWNTL-SVNGHDHHAITSTLRKAQLSDKPTMIACET 256 (673)
Q Consensus 208 ~------------~~~~~~~~~~~a~Gw~~~-~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T 256 (673)
. ..+-|......+.|-.+. +.-.-|...+.+.+++|-..+.+++|.+..
T Consensus 141 ~G~~t~ttp~G~~~~p~n~~~la~a~ga~fVAR~~~~~~~~l~~~ik~Ai~hkGfs~i~Vls 202 (306)
T PRK05778 141 RGSKTKTLPYGNIEPPIDPCALALAAGATFVARSFSGDVKQLKELIKKAISHKGFAFIDVLS 202 (306)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 98746647899867886999999976998699875478899999999996699967999967
No 164
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=96.45 E-value=0.032 Score=35.19 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=16.3
Q ss_pred CCCCCCCCCCH-HHHHHHHHHHHHC-CCCHHHHH
Q ss_conf 44444444406-7888888875110-22102220
Q gi|254780655|r 223 WNTLSVNGHDH-HAITSTLRKAQLS-DKPTMIAC 254 (673)
Q Consensus 223 w~~~~vdG~d~-~~i~~a~~~ak~~-~kP~~I~~ 254 (673)
|.+..-+..++ +.+.+|++.|+.. .+|++|..
T Consensus 145 ~~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~i 178 (587)
T PRK06965 145 HNFLVKDVRDLAETVKKAFYIARTGRPGPVLIDI 178 (587)
T ss_pred EEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 0476188999999999999998527996279957
No 165
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=96.42 E-value=0.0066 Score=40.12 Aligned_cols=33 Identities=9% Similarity=0.164 Sum_probs=17.5
Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 9972999952688999999999999739943998
Q gi|254780655|r 557 PNAQVTIFSSGSELKIAVEACEILSSRNISTRVV 590 (673)
Q Consensus 557 ~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi 590 (673)
+..-|.+++=|+....+.+- ....++++.+.+|
T Consensus 437 ~r~Vv~~~GDGsf~m~~~eL-~Ta~r~~lpv~iv 469 (564)
T PRK08155 437 DRKVLCFSGDGSLMMNIQEM-ATAAENQLDVKII 469 (564)
T ss_pred CCCEEEEECCHHHHHHHHHH-HHHHHHCCCCEEE
T ss_conf 98289997417864309999-9999959790899
No 166
>pfam02776 TPP_enzyme_N Thiamine pyrophosphate enzyme, N-terminal TPP binding domain.
Probab=96.41 E-value=0.008 Score=39.49 Aligned_cols=113 Identities=18% Similarity=0.139 Sum_probs=69.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEE-CCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHCCCCCHHHHHCC
Q ss_conf 62002356787998728876220-01003555300124541111000013024543333333310100022210111012
Q gi|254780655|r 419 VREHAMAAAMNGIALHKGLAPYS-GTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHLAALRAIPD 497 (673)
Q Consensus 419 IaE~~~~~~aaGla~~~g~~p~~-~tf~~F~~~~~~~ir~~al~~~~v~~v~th~gi~~G~DGpTHq~iedia~lr~iPn 497 (673)
.-|++++.+|.|.+.-.|...+| .|...=..-+...|..+-..+.|++++........-..+..||.+++..++|.+-.
T Consensus 46 ~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~~d~~~~~~~~tk 125 (172)
T pfam02776 46 RHEQGAGFAADGYARATGKPGVVLVTSGPGATNALTGLANAYVDSIPVLVISGQVPTSDLGQGAFQEELDQLALFRPVTK 125 (172)
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHCCCCCCHHHHHHHCCCCCEEE
T ss_conf 87799999999999986998799983580688799999999875998499936887776078952000455414566066
Q ss_pred --CCEEEECC-HHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf --21121120-12457777652025678349995244
Q gi|254780655|r 498 --LLVLRPAD-SIETLECWQVALKEKNRPSVLSLSRQ 531 (673)
Q Consensus 498 --l~v~~P~d-~~E~~~~~~~al~~~~gP~~ir~~R~ 531 (673)
..+-.|.+ ...+..+++.|.....||++|-+|+.
T Consensus 126 ~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~D 162 (172)
T pfam02776 126 WAERVTSPDEIPEALDRAFRTALSGRPGPVYLELPLD 162 (172)
T ss_pred EEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHH
T ss_conf 8888899999999999999998329997799997903
No 167
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=96.40 E-value=0.046 Score=34.03 Aligned_cols=111 Identities=14% Similarity=0.084 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC-CCC-----CCCC
Q ss_conf 1479999999999998534268876784599984362114344557887652202233069996276-322-----3223
Q gi|254780655|r 133 GQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNG-ISI-----DGPI 206 (673)
Q Consensus 133 G~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~-~si-----~~~~ 206 (673)
|-.++.|.|+.+|.. |-.|+++-|||++- +.-..-+.+|...+.| +.+|+-||+ +.+ |..+
T Consensus 67 GRalp~AtGiK~anP-----------dL~Viv~~GDGD~~-~IGgnH~iHA~RRN~d-it~Iv~nN~iYGlTkGQ~SPTt 133 (284)
T PRK11869 67 GRAIPAATAVKATNP-----------NLTVIAEGGDGDMY-AEGGNHLIHAIRRNPD-ITVLIHNNQIYGLTKGQASPTT 133 (284)
T ss_pred CCHHHHHHHHHHHCC-----------CCEEEEEECCCHHH-HHHHHHHHHHHHCCCC-CEEEEECCEECCCCCCCCCCCC
T ss_conf 770788999987689-----------97699981266154-3028889999974898-0899988810011579889899
Q ss_pred CCC------------CCCCHHHHHHHCCCCCCC-CCCCCHHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf 556------------782179988641444444-44440678888888751102210222013
Q gi|254780655|r 207 SLA------------DSTDQYARFRASGWNTLS-VNGHDHHAITSTLRKAQLSDKPTMIACET 256 (673)
Q Consensus 207 ~~~------------~~~~~~~~~~a~Gw~~~~-vdG~d~~~i~~a~~~ak~~~kP~~I~~~T 256 (673)
... .+-|..+...+.|-.+.. .---|.+.+.+.+++|...+..++|.+-.
T Consensus 134 ~~G~~T~t~P~G~~e~p~np~~la~a~GatfVAR~~~~~~~~l~~~ik~Ai~hkGfs~VeVls 196 (284)
T PRK11869 134 LKGTKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEIIKEAIKHKGLAIVDIFH 196 (284)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 998805578899888997999999976997899871289999999999996799817999967
No 168
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=96.35 E-value=0.018 Score=36.99 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHC-CCCHHHHH
Q ss_conf 7888888875110-22102220
Q gi|254780655|r 234 HAITSTLRKAQLS-DKPTMIAC 254 (673)
Q Consensus 234 ~~i~~a~~~ak~~-~kP~~I~~ 254 (673)
..+.+|++.|... ..|+.|.+
T Consensus 150 ~~v~~A~~~A~~~~pGPV~L~i 171 (572)
T PRK09259 150 IAVARAIRTAVSGRPGGVYLDL 171 (572)
T ss_pred HHHHHHHHHHHHCCCCCEEEEC
T ss_conf 9999999999757997179955
No 169
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=96.34 E-value=0.027 Score=35.73 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=17.5
Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 9972999952688999999999999739943998
Q gi|254780655|r 557 PNAQVTIFSSGSELKIAVEACEILSSRNISTRVV 590 (673)
Q Consensus 557 ~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi 590 (673)
+..-|+|++=|+......|. ....++++.+.+|
T Consensus 437 dr~Vv~i~GDGsf~m~~qEL-~Tavr~~lpv~iv 469 (586)
T PRK06276 437 DANVIAVTGDGGFLMNSQEL-ATIAEYDIPVIVV 469 (586)
T ss_pred CCCEEEEECCHHHHHHHHHH-HHHHHHCCCCEEE
T ss_conf 99689998856875509999-9999978894899
No 170
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=96.34 E-value=0.0088 Score=39.19 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=17.5
Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 9972999952688999999999999739943998
Q gi|254780655|r 557 PNAQVTIFSSGSELKIAVEACEILSSRNISTRVV 590 (673)
Q Consensus 557 ~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi 590 (673)
+..-|.|++=|+....+.|. ....++++.+.+|
T Consensus 439 ~r~Vv~i~GDGsf~m~~qEL-~Tavr~~lpv~ii 471 (572)
T PRK08979 439 DETVVCVTGDGSIQMNIQEL-STALQYDIPVKII 471 (572)
T ss_pred CCCEEEEECCHHHHHHHHHH-HHHHHHCCCCEEE
T ss_conf 99689998827987779999-9999978894899
No 171
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=96.25 E-value=0.016 Score=37.28 Aligned_cols=32 Identities=9% Similarity=0.092 Sum_probs=15.7
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 972999952688999999999999739943998
Q gi|254780655|r 558 NAQVTIFSSGSELKIAVEACEILSSRNISTRVV 590 (673)
Q Consensus 558 ~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi 590 (673)
..-|.|++=|+....+-|-. ...++++.+.||
T Consensus 445 r~Vv~i~GDGsf~mt~qEL~-Tavr~~lpv~iv 476 (588)
T CHL00099 445 EQVICISGDASFQMNLQELG-TIAQYKLPIKII 476 (588)
T ss_pred CCEEEEECCHHHHHHHHHHH-HHHHHCCCCEEE
T ss_conf 81899975458632199999-999968995899
No 172
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=96.23 E-value=0.0096 Score=38.93 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=20.7
Q ss_pred CCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 34737998569972999952688999999999999739943998
Q gi|254780655|r 547 ALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVV 590 (673)
Q Consensus 547 ~~G~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi 590 (673)
.+|+. +...+..-|.|++=|+......|- ....++++.+.+|
T Consensus 432 AiGA~-lA~p~r~Vv~i~GDG~f~mt~qEL-~Ta~r~~lpv~iv 473 (574)
T PRK06466 432 AMGVK-LAFPDQDVVCVTGEGSIQMNIQEL-STCLQYGLPVKII 473 (574)
T ss_pred HHHHH-HHCCCCCEEEEECHHHHHHHHHHH-HHHHHHCCCCEEE
T ss_conf 99999-858998389997506987659999-9999959995899
No 173
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=96.17 E-value=0.012 Score=38.32 Aligned_cols=43 Identities=21% Similarity=0.186 Sum_probs=19.1
Q ss_pred CCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 234737998569972999952688999999999999739943998
Q gi|254780655|r 546 CALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVV 590 (673)
Q Consensus 546 ~~~G~~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi 590 (673)
..+|+.. ...+..-|.|++=|+......| -....++++.+.+|
T Consensus 430 aAiGA~l-A~p~r~Vv~i~GDG~f~m~~~E-L~Ta~r~~lpi~iv 472 (570)
T PRK06725 430 AAIGAQL-AKEEELVICIAGDASFQMNIQE-LQTIAENNIPVKVF 472 (570)
T ss_pred HHHHHHH-HCCCCCEEEEECCHHHHHHHHH-HHHHHHHCCCCEEE
T ss_conf 9999998-4899818999775277522999-99999968993899
No 174
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=96.17 E-value=0.041 Score=34.39 Aligned_cols=31 Identities=23% Similarity=0.125 Sum_probs=18.8
Q ss_pred CCCEEEECCHHHHHHHHHHHHCC--CCCCEEEE
Q ss_conf 22112112012457777652025--67834999
Q gi|254780655|r 497 DLLVLRPADSIETLECWQVALKE--KNRPSVLS 527 (673)
Q Consensus 497 nl~v~~P~d~~E~~~~~~~al~~--~~gP~~ir 527 (673)
+..-++..++.|+..+++.|+.. .++|++|-
T Consensus 530 G~~g~~V~~~~el~~Al~~Ala~~~~~~p~lie 562 (568)
T PRK08327 530 GGYAERVETPEELPGALGEALAAIREGRSAVLD 562 (568)
T ss_pred CCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 985999799999999999998616799769999
No 175
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=96.12 E-value=0.015 Score=37.46 Aligned_cols=42 Identities=17% Similarity=0.145 Sum_probs=19.8
Q ss_pred CHHHHHHHC-CCCCCCCCCCCH-HHHHHHHHHHHHC-CCCHHHHH
Q ss_conf 179988641-444444444406-7888888875110-22102220
Q gi|254780655|r 213 DQYARFRAS-GWNTLSVNGHDH-HAITSTLRKAQLS-DKPTMIAC 254 (673)
Q Consensus 213 ~~~~~~~a~-Gw~~~~vdG~d~-~~i~~a~~~ak~~-~kP~~I~~ 254 (673)
|+...|+.. -|.+.--+..++ ..+.+|++.|... .+|+.|.+
T Consensus 120 d~~~l~~~~tk~~~~v~~~~~~~~~~~~A~~~A~~~r~GPV~l~l 164 (562)
T PRK06048 120 DITGITMPITKHNYLVQDAKDLPRIVKEAFHIASTGRPGPVLIDL 164 (562)
T ss_pred CHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 599872022246068489999999999999999648997679973
No 176
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=96.12 E-value=0.017 Score=37.14 Aligned_cols=113 Identities=21% Similarity=0.149 Sum_probs=75.8
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCCCCCCCCHHHHCCCC
Q ss_conf 01003257620023567879987288762200100355530012454111100001302-45433333333101000222
Q gi|254780655|r 411 SGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVL-THDSIGLGEDGPTHQPVEHL 489 (673)
Q Consensus 411 p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~tf~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~~G~DGpTHq~iedi 489 (673)
...+++.. -|..+..++.|.++ .|.+.+++|-..=+++|.+.+..++.+++|++++. .++|-..|-- .+.| -|+
T Consensus 41 ~~~~~~~e-~E~~A~~~~~Gas~-aG~r~~t~ts~~Gl~l~~e~l~~a~~~~~p~Vi~~~~r~g~~~~~~-~~~q--~D~ 115 (160)
T cd07034 41 GGVVVQAE-SEHAAAEAAIGASA-AGARAMTATSGPGLNLMAEALYLAAGAELPLVIVVAQRPGPSTGLP-KPDQ--SDL 115 (160)
T ss_pred CEEEEEEC-CHHHHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC-CCCC--HHH
T ss_conf 83899855-68999999999986-3987374306533988887999998478888999974588865455-5441--789
Q ss_pred CHHHHHC-CCCEEEECCHHHHHHHHHHHHCC---CCCCEEEEE
Q ss_conf 1011101-22112112012457777652025---678349995
Q gi|254780655|r 490 AALRAIP-DLLVLRPADSIETLECWQVALKE---KNRPSVLSL 528 (673)
Q Consensus 490 a~lr~iP-nl~v~~P~d~~E~~~~~~~al~~---~~gP~~ir~ 528 (673)
...|.-- .+.|+.|+|..|+..+...|++- ...|+.+++
T Consensus 116 ~~~~~~g~~~~vl~p~~~qE~~d~~~~A~~lae~~~~Pvi~~~ 158 (160)
T cd07034 116 MAARYGGHPWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred HHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 9999679987999379999999999999999998689989953
No 177
>pfam01855 POR_N domain. This family includes the N terminal structural domain of the pyruvate ferredoxin oxidoreductase. This domain binds thiamine diphosphate, and along with domains II and IV, is involved in inter subunit contacts. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited.
Probab=96.07 E-value=0.018 Score=36.93 Aligned_cols=106 Identities=17% Similarity=0.090 Sum_probs=76.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCCCCCCCCHHHHCCCCCHHHHHCC
Q ss_conf 620023567879987288762200100355530012454111100001302-4543333333310100022210111012
Q gi|254780655|r 419 VREHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVL-THDSIGLGEDGPTHQPVEHLAALRAIPD 497 (673)
Q Consensus 419 IaE~~~~~~aaGla~~~g~~p~~~tf~~F~~~~~~~ir~~al~~~~v~~v~-th~gi~~G~DGpTHq~iedia~lr~iPn 497 (673)
=.|..+.+++.|.++ .|.+.+++|-++=+.+|.+.+..++..++|++++. .|++-+.| -+||..-.|+.+.|.. +
T Consensus 43 e~E~~A~~~~~GAs~-aGara~taTs~~Gl~lm~e~l~~aag~~~P~V~~v~~R~~~~~g--l~~~~eq~D~~~~rd~-g 118 (230)
T pfam01855 43 ESEIGAISAVIGAAA-AGARAMTATSGQGLLLMIENLGKAAGEELPIVIHVVARAGPSPG--LSIFGDQGDLMAARDT-G 118 (230)
T ss_pred CCHHHHHHHHHHHHH-HCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC--CCCCCCHHHHHHHHHC-C
T ss_conf 887999999999998-48620440267527675678889987368859999966789987--7666513789999856-9
Q ss_pred CCEEEECCHHHHHHHHHHHHCC---CCCCEEEEE
Q ss_conf 2112112012457777652025---678349995
Q gi|254780655|r 498 LLVLRPADSIETLECWQVALKE---KNRPSVLSL 528 (673)
Q Consensus 498 l~v~~P~d~~E~~~~~~~al~~---~~gP~~ir~ 528 (673)
+.++.|+|..|+..+...|++- ...|+.+.+
T Consensus 119 ~~vl~~~~~QEa~d~~~~A~~lae~~~~Pv~v~~ 152 (230)
T pfam01855 119 WIVLAPENVQEAFDLALVAFNLAEKVRTPVIHLF 152 (230)
T ss_pred CEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 0899469999999999999999999889989982
No 178
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=96.00 E-value=0.047 Score=33.97 Aligned_cols=31 Identities=19% Similarity=0.101 Sum_probs=15.6
Q ss_pred CCEEEEECCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 72999952688999999999999739943998
Q gi|254780655|r 559 AQVTIFSSGSELKIAVEACEILSSRNISTRVV 590 (673)
Q Consensus 559 ~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi 590 (673)
.-|.|++=|+....+-|. ....++++.+.+|
T Consensus 441 ~Vv~i~GDG~f~m~~qEL-~Ta~r~~lpv~iv 471 (572)
T PRK06456 441 VVVDLDGDGSFLMTGNNL-ATAVDEHIPIISV 471 (572)
T ss_pred EEEEEECCHHHHCCHHHH-HHHHHHCCCCEEE
T ss_conf 299998755863039999-9999958993899
No 179
>PRK11269 glyoxylate carboligase; Provisional
Probab=95.97 E-value=0.023 Score=36.24 Aligned_cols=31 Identities=10% Similarity=0.184 Sum_probs=14.3
Q ss_pred CCCCCCCCCCH-HHHHHHHHHHHHCC-CCHHHH
Q ss_conf 44444444406-78888888751102-210222
Q gi|254780655|r 223 WNTLSVNGHDH-HAITSTLRKAQLSD-KPTMIA 253 (673)
Q Consensus 223 w~~~~vdG~d~-~~i~~a~~~ak~~~-kP~~I~ 253 (673)
|.+...+..++ ..+.+|++.|+... +|++|.
T Consensus 129 ~~~~v~~~~~~~~~l~~A~~~a~~grpGPV~l~ 161 (591)
T PRK11269 129 WAVTVREPALVPRVFQQAFHLMRSGRPGPVLID 161 (591)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 245438599999999999999860899608997
No 180
>PRK08273 pyruvate decarboxylase; Provisional
Probab=95.90 E-value=0.052 Score=33.60 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHCCCCHHHHH
Q ss_conf 788888887511022102220
Q gi|254780655|r 234 HAITSTLRKAQLSDKPTMIAC 254 (673)
Q Consensus 234 ~~i~~a~~~ak~~~kP~~I~~ 254 (673)
..|.+|++.|....+|++|..
T Consensus 141 ~~l~~A~~~A~~~rgPv~l~i 161 (597)
T PRK08273 141 HLVDRAVRTALAERTVTAVIL 161 (597)
T ss_pred HHHHHHHHHHHCCCCCEEEEE
T ss_conf 999999999865999889997
No 181
>PRK12474 hypothetical protein; Provisional
Probab=95.73 E-value=0.049 Score=33.81 Aligned_cols=30 Identities=13% Similarity=0.224 Sum_probs=22.3
Q ss_pred CCCEEEECCHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 2211211201245777765202567834999
Q gi|254780655|r 497 DLLVLRPADSIETLECWQVALKEKNRPSVLS 527 (673)
Q Consensus 497 nl~v~~P~d~~E~~~~~~~al~~~~gP~~ir 527 (673)
++.-++..+..|+..+++.|+++ +||+.|=
T Consensus 486 G~~g~~V~~~~el~~al~~Al~~-~gP~lIe 515 (518)
T PRK12474 486 GVEASRATTAEEFSAQYAAAMAQ-RGPRLIE 515 (518)
T ss_pred CCEEEEECCHHHHHHHHHHHHCC-CCCEEEE
T ss_conf 99899979999999999999739-9977999
No 182
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.69 E-value=0.041 Score=34.38 Aligned_cols=33 Identities=12% Similarity=0.051 Sum_probs=17.3
Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 9972999952688999999999999739943998
Q gi|254780655|r 557 PNAQVTIFSSGSELKIAVEACEILSSRNISTRVV 590 (673)
Q Consensus 557 ~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi 590 (673)
+..-|+|++=|+......| -....++++.+.+|
T Consensus 447 ~r~Vv~i~GDGsf~m~~~E-L~Tavr~~lpv~iv 479 (594)
T PRK09107 447 DALVIDIAGDASIQMNMQE-MSTAVQYNLPIKIF 479 (594)
T ss_pred CCCEEEEECCHHHHHHHHH-HHHHHHHCCCCEEE
T ss_conf 9948999887187655999-99999968892899
No 183
>PRK07524 hypothetical protein; Provisional
Probab=95.58 E-value=0.024 Score=36.04 Aligned_cols=100 Identities=18% Similarity=0.136 Sum_probs=47.1
Q ss_pred HHHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEE-CCCCCCCC------CCC----CCHHHHCCCCCH
Q ss_conf 56787998728876220010--035553001245411110000130-24543333------333----310100022210
Q gi|254780655|r 425 AAAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHV-LTHDSIGL------GED----GPTHQPVEHLAA 491 (673)
Q Consensus 425 ~~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v-~th~gi~~------G~D----GpTHq~iedia~ 491 (673)
...+.|.++...-+|+++.- ..|+- .-..+-.+.-.++|++++ +..+|.+. ..+ |-+.+.. |.+.
T Consensus 413 lpaaiGaalA~p~r~vi~i~GDGsf~m-~~~eL~Ta~r~~lpi~iiV~NN~gyg~i~~~~~~~~~~~~~~~~~~~-df~~ 490 (534)
T PRK07524 413 LPAAIGAALGAPERPVVCLVGDGGLQF-TLPELASAVEADLPLVVLLWNNQGYGEIRRYMVARDIEPVGVDPYTP-DFAA 490 (534)
T ss_pred HHHHHHHHHHCCCCCEEEEECCHHHHH-HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCC-CHHH
T ss_conf 599999998298997899987268754-19999999997859189999798325999999862788655778999-9999
Q ss_pred HHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 111012211211201245777765202567834999
Q gi|254780655|r 492 LRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLS 527 (673)
Q Consensus 492 lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir 527 (673)
+-.--++.-++..+..|+..+++.+++. +||++|-
T Consensus 491 lA~a~G~~~~~v~~~~el~~al~~al~~-~gp~lIe 525 (534)
T PRK07524 491 LARAFGCAAERVADLDQLQAALRAAFAR-PGPTLIE 525 (534)
T ss_pred HHHHCCCEEEEECCHHHHHHHHHHHHCC-CCCEEEE
T ss_conf 9997799799979999999999999808-9958999
No 184
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=95.53 E-value=0.034 Score=34.98 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=7.8
Q ss_pred HHHHHHHHHHCC-CCHHHH
Q ss_conf 888888751102-210222
Q gi|254780655|r 236 ITSTLRKAQLSD-KPTMIA 253 (673)
Q Consensus 236 i~~a~~~ak~~~-kP~~I~ 253 (673)
+.+|++.|.... +|++|.
T Consensus 139 i~~Af~~A~sgrpGpv~i~ 157 (550)
T COG0028 139 VARAFRIALSGRPGPVVVD 157 (550)
T ss_pred HHHHHHHHHCCCCCEEEEE
T ss_conf 9999999852899629997
No 185
>PRK07586 hypothetical protein; Validated
Probab=95.49 E-value=0.067 Score=32.82 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=19.9
Q ss_pred CCCEEEECCHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 2211211201245777765202567834999
Q gi|254780655|r 497 DLLVLRPADSIETLECWQVALKEKNRPSVLS 527 (673)
Q Consensus 497 nl~v~~P~d~~E~~~~~~~al~~~~gP~~ir 527 (673)
++.-++-.+..|+..+++.|++. ++|+.|-
T Consensus 482 G~~g~~V~~~~el~~Al~~a~~~-~gP~lIe 511 (514)
T PRK07586 482 GVPARRVTTAEEFADALARALAE-PGPHLIE 511 (514)
T ss_pred CCEEEEECCHHHHHHHHHHHHCC-CCCEEEE
T ss_conf 99799979999999999999728-9967999
No 186
>PRK07449 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; Validated
Probab=95.22 E-value=0.27 Score=28.41 Aligned_cols=33 Identities=15% Similarity=0.040 Sum_probs=13.6
Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 9972999952688999999999999739943998
Q gi|254780655|r 557 PNAQVTIFSSGSELKIAVEACEILSSRNISTRVV 590 (673)
Q Consensus 557 ~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi 590 (673)
+++-|+|++=|+.....-+ -....+.++.+.||
T Consensus 423 ~~~vv~i~GDGsf~~~~~e-L~Ta~~~~lpv~iv 455 (548)
T PRK07449 423 GKPTVALIGDLSFLHDLNG-LLLLKQESGPLTIV 455 (548)
T ss_pred CCCEEEEECCHHHHHCHHH-HHHHHHCCCCCEEE
T ss_conf 9988999554587604579-99998669995899
No 187
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=95.20 E-value=0.057 Score=33.31 Aligned_cols=109 Identities=18% Similarity=0.110 Sum_probs=66.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEE-CCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCC-CCCCCCHHHHCCCCCHHHHHC
Q ss_conf 62002356787998728876220-0100355530012454111100001302454333-333331010002221011101
Q gi|254780655|r 419 VREHAMAAAMNGIALHKGLAPYS-GTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIG-LGEDGPTHQPVEHLAALRAIP 496 (673)
Q Consensus 419 IaE~~~~~~aaGla~~~g~~p~~-~tf~~F~~~~~~~ir~~al~~~~v~~v~th~gi~-~G~DGpTHq~iedia~lr~iP 496 (673)
.-|++++-||.|.+.-.|...+| .|-..=..-....+..+-+.+.|++++....... .| -..||.+++..+++.+-
T Consensus 42 ~hE~~A~~mA~gyar~tgkp~v~~~t~GPG~~N~~~gl~~A~~d~~Pvl~itg~~~~~~~g--~g~~Q~~dq~~l~~~it 119 (162)
T cd07037 42 VDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLTADRPPELRG--TGANQTIDQVGLFGDYV 119 (162)
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHCC--CCCCCCCCHHHHHHHHH
T ss_conf 6677899999999998799879994788358888899998753299889996899788617--89886437877736552
Q ss_pred CC--CEEEECCHH-------HHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 22--112112012-------4577776520256783499952
Q gi|254780655|r 497 DL--LVLRPADSI-------ETLECWQVALKEKNRPSVLSLS 529 (673)
Q Consensus 497 nl--~v~~P~d~~-------E~~~~~~~al~~~~gP~~ir~~ 529 (673)
-. .|-.|.+.. .+..+++.|.....||++|-+|
T Consensus 120 K~s~~v~~~~~~~~~~~i~~~l~~A~~~A~tg~pGPV~l~lP 161 (162)
T cd07037 120 RWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECC
T ss_conf 078776883236557899999999999971899996898489
No 188
>PRK08266 hypothetical protein; Provisional
Probab=95.17 E-value=0.051 Score=33.69 Aligned_cols=22 Identities=5% Similarity=0.134 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHC-CCCHHHHH
Q ss_conf 67888888875110-22102220
Q gi|254780655|r 233 HHAITSTLRKAQLS-DKPTMIAC 254 (673)
Q Consensus 233 ~~~i~~a~~~ak~~-~kP~~I~~ 254 (673)
...+.+|++.|... .+|+.|.+
T Consensus 140 ~~~l~~A~~~a~~~~~GPV~l~i 162 (531)
T PRK08266 140 PALVARAFQEMLSGRPGPVALEM 162 (531)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 99999999999647998549978
No 189
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=95.16 E-value=0.079 Score=32.30 Aligned_cols=114 Identities=19% Similarity=0.256 Sum_probs=68.7
Q ss_pred HCCCCCCCHHHHHHHHHHHHHCCCCCCEECC-CH-HHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 0032576200235678799872887622001-00-355530012454111100001302454333333331010002221
Q gi|254780655|r 413 RYLHYGVREHAMAAAMNGIALHKGLAPYSGT-FM-VFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHLA 490 (673)
Q Consensus 413 r~i~~GIaE~~~~~~aaGla~~~g~~p~~~t-f~-~F~~~~~~~ir~~al~~~~v~~v~th~gi~~G~DGpTHq~iedia 490 (673)
|++.+ ..|+.++.+|.|.+.-+|-.+++.+ .. -|.+ +-..|..+...+.|++++..-.+- ...+-..||.+.+..
T Consensus 36 ~~i~~-~~E~~A~~~A~g~~~~tg~~~v~~~~~gpG~~n-~~~~l~~A~~~~~Pvl~i~g~~~~-~~~~~~~~q~~d~~~ 112 (155)
T cd07035 36 RYILV-RHEQGAVGMADGYARATGKPGVVLVTSGPGLTN-AVTGLANAYLDSIPLLVITGQRPT-AGEGRGAFQEIDQVA 112 (155)
T ss_pred EEEEE-CCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH-HHHHHHHHHHCCCCEEEEECCCCH-HHHCCCCCCCCCHHH
T ss_conf 79987-877999999999998659975999827768887-889999999838980899468886-772755654536476
Q ss_pred HHHHHCCCCEEEECCHHHHH----HHHHHHHCCCCCCEEEEECC
Q ss_conf 01110122112112012457----77765202567834999524
Q gi|254780655|r 491 ALRAIPDLLVLRPADSIETL----ECWQVALKEKNRPSVLSLSR 530 (673)
Q Consensus 491 ~lr~iPnl~v~~P~d~~E~~----~~~~~al~~~~gP~~ir~~R 530 (673)
+++.+= ...++..++.++. .+++.|.....||++|-+|+
T Consensus 113 ~~~~~~-k~~~~i~~~~~~~~~i~~A~~~a~s~~~gPv~l~iP~ 155 (155)
T cd07035 113 LFRPIT-KWAYRVTSPEEIPEALRRAFRIALSGRPGPVALDLPK 155 (155)
T ss_pred HCCCCC-CEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEECCC
T ss_conf 527766-3257889999999999999999745989458998087
No 190
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=94.76 E-value=0.36 Score=27.54 Aligned_cols=44 Identities=27% Similarity=0.214 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9999999999853426887678459998436211434455788765220223306999
Q gi|254780655|r 138 NAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLW 195 (673)
Q Consensus 138 ~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~ 195 (673)
.|+|+|.+.+ ++ |.++|--|--. -..+-|+.-|..-+. +|||+-
T Consensus 61 fALGlAKas~-------rP-----Vavi~TSGTA~-ANl~PAViEA~~srv-pLIVLT 104 (566)
T COG1165 61 FALGLAKASK-------RP-----VAVICTSGTAV-ANLYPAVIEANLSRV-PLIVLT 104 (566)
T ss_pred HHHHHHHHCC-------CC-----EEEEECCCCHH-HHCCHHHHHHHHCCC-CEEEEE
T ss_conf 8876655138-------98-----79997674056-411578775431388-469982
No 191
>PRK06154 hypothetical protein; Provisional
Probab=94.73 E-value=0.07 Score=32.67 Aligned_cols=120 Identities=16% Similarity=0.166 Sum_probs=51.5
Q ss_pred CCCCCCHHHCCCCCCCH--HHHHHHHHHHHHCCCCCCEECCC--HHHHHHHHHHHHHHHHHHCCCEEECCCC-CCCC---
Q ss_conf 45432001003257620--02356787998728876220010--0355530012454111100001302454-3333---
Q gi|254780655|r 405 ISKSDFSGRYLHYGVRE--HAMAAAMNGIALHKGLAPYSGTF--MVFSDYSRPAIRLASLMGIRVIHVLTHD-SIGL--- 476 (673)
Q Consensus 405 ~~~~~~p~r~i~~GIaE--~~~~~~aaGla~~~g~~p~~~tf--~~F~~~~~~~ir~~al~~~~v~~v~th~-gi~~--- 476 (673)
+++-..|.+|+..|-.= .-....|.|.++...-+|++++- ..|+- .-..+.-+.-.++|++++.-.. +++.
T Consensus 406 ~~~~~~p~~~~~~g~~g~mG~glpaAiGa~lA~p~~~Vv~i~GDGsf~m-~~qEL~Ta~r~~lpv~viV~NN~~~g~~~~ 484 (556)
T PRK06154 406 FYRARRPGSYLGWGKTTQLGYGLGLAMGAKLARPDALVANLLGDAAFGE-CGMDFETAVRNRIPTVTILLNNGCMGGYDK 484 (556)
T ss_pred HHHCCCCCCEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHH-HHHHHHHHHHHCCCCEEEEEECCHHHHHHH
T ss_conf 5303788844047987744540699999997389993899987379887-799999999949997899996806389998
Q ss_pred --CCCCCHHHHCC----CCCHHHHHCCCCEEEECCHHHHHHHHHHHHCC--CCCCEEE
Q ss_conf --33331010002----22101110122112112012457777652025--6783499
Q gi|254780655|r 477 --GEDGPTHQPVE----HLAALRAIPDLLVLRPADSIETLECWQVALKE--KNRPSVL 526 (673)
Q Consensus 477 --G~DGpTHq~ie----dia~lr~iPnl~v~~P~d~~E~~~~~~~al~~--~~gP~~i 526 (673)
...+. .++.. |.+.+----++.-++-.++.|+..+++.|++. .++|+.|
T Consensus 485 ~~~~~~~-~~~~~~~~~Df~~lA~a~G~~g~~V~~~~el~~Al~~A~~~~~~g~P~lI 541 (556)
T PRK06154 485 HMPLSTT-KYRTRFLSGDYAMIARALGGYTERVEDPERLVPALRRAARKAKTGRPALL 541 (556)
T ss_pred HHHHHCC-CCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 8675067-66787589999999997799799979999999999999854889983999
No 192
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=94.56 E-value=0.4 Score=27.21 Aligned_cols=178 Identities=13% Similarity=0.160 Sum_probs=85.3
Q ss_pred CCCCCHHHHHHHHHHHHHCC--CCCCEECCCHHHHHHH---HHHHHHHHH----HHCCCEEECCCCCCCCCCCCCHHHHC
Q ss_conf 25762002356787998728--8762200100355530---012454111----10000130245433333333101000
Q gi|254780655|r 416 HYGVREHAMAAAMNGIALHK--GLAPYSGTFMVFSDYS---RPAIRLASL----MGIRVIHVLTHDSIGLGEDGPTHQPV 486 (673)
Q Consensus 416 ~~GIaE~~~~~~aaGla~~~--g~~p~~~tf~~F~~~~---~~~ir~~al----~~~~v~~v~th~gi~~G~DGpTHq~i 486 (673)
+-...|.++.++--|-++.. .+.-+.+-|..|..-+ .||--.+.- ....++...-|.. -|. ||.|-+-
T Consensus 631 nS~LSEeAvlgFEYGYs~~~p~~lvlWEAQFGDFaNgAQvviDQfisSge~KW~r~sgLv~lLPHgy--EGQ-GPEHSSa 707 (906)
T COG0567 631 NSPLSEEAVLGFEYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFISSGEQKWGRMSGLVMLLPHGY--EGQ-GPEHSSA 707 (906)
T ss_pred ECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHCCCEEECCCCC--CCC-CCCCCCC
T ss_conf 1455688887565314323873221001320561368761213656659899988657227722767--899-9767643
Q ss_pred CCCCHHHHH--CCCCEEEECCHHHHHHHHHHHHC-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEC----CCC
Q ss_conf 222101110--12211211201245777765202-56783499952444433456655322123473799856----997
Q gi|254780655|r 487 EHLAALRAI--PDLLVLRPADSIETLECWQVALK-EKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYIST----PNA 559 (673)
Q Consensus 487 edia~lr~i--Pnl~v~~P~d~~E~~~~~~~al~-~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~----~~~ 559 (673)
..--+|+.. -||+|..|+.+.+...+++.-+. ....|-.+--|++-+- .+......+.+..|+...+.. .+.
T Consensus 708 RlER~LQLcaE~NmqV~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR-~~~a~S~~~el~~~~F~~vl~d~~~~~~ 786 (906)
T COG0567 708 RLERFLQLCAENNMQVVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLR-HKLAVSSLEELTEGTFQPVLEDIDELDP 786 (906)
T ss_pred HHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHCCCCCEEECCHHHHHH-CCCCCCCHHHHCCCHHHCCHHCCCCCCC
T ss_conf 468899861875887883382899999999987641567518557655654-6266884555230122100201111454
Q ss_pred --CEEEEECCHHHHHHHHHHHHHHHCCC-CEEEEECCCCCHHCC
Q ss_conf --29999526889999999999997399-439985746581000
Q gi|254780655|r 560 --QVTIFSSGSELKIAVEACEILSSRNI-STRVVSVPCFELFFE 600 (673)
Q Consensus 560 --dv~iia~G~~v~~al~aa~~L~~~Gi-~~~Vi~~~s~k~ld~ 600 (673)
.-+++++|-+- ..+.+.. +++|. ++.++-+-.+=||-.
T Consensus 787 ~v~rvvlcSGKvy-ydl~~~r--~~~g~~dvaiiRiEqLyPfP~ 827 (906)
T COG0567 787 KVKRVVLCSGKVY-YDLLEQR--EKDGRDDVAIVRIEQLYPFPA 827 (906)
T ss_pred CEEEEEEECCCHH-HHHHHHH--HHCCCCCEEEEEEECCCCCHH
T ss_conf 4135763044067-9999778--646876526875201167668
No 193
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=94.31 E-value=0.096 Score=31.67 Aligned_cols=115 Identities=17% Similarity=0.059 Sum_probs=68.4
Q ss_pred HCCCCCCCHHHHHHHHHHHHHCCCCCCEEC-CCHHHHHHHHHHHHHHHHHHCCCEEECCCCCC-CCCCCCCHHHHCCCCC
Q ss_conf 003257620023567879987288762200-10035553001245411110000130245433-3333331010002221
Q gi|254780655|r 413 RYLHYGVREHAMAAAMNGIALHKGLAPYSG-TFMVFSDYSRPAIRLASLMGIRVIHVLTHDSI-GLGEDGPTHQPVEHLA 490 (673)
Q Consensus 413 r~i~~GIaE~~~~~~aaGla~~~g~~p~~~-tf~~F~~~~~~~ir~~al~~~~v~~v~th~gi-~~G~DGpTHq~iedia 490 (673)
|++.+ --|++++.+|.|.+...|-..+|. +...=..-+...|..+...+.|++++...... ..|. ..+|-+++..
T Consensus 40 ~~i~~-rhE~~A~~mA~gyar~tg~~gv~~~t~GpG~tN~~~gl~~A~~~~~Pll~i~g~~~~~~~~~--~~~Q~~d~~~ 116 (164)
T cd07039 40 EFIQV-RHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAGQVPTDELGT--DYFQEVDLLA 116 (164)
T ss_pred EEEEE-CCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHCCC--CCCCCCCHHH
T ss_conf 39954-87899999999999997998799984282388899999999985897799966775543489--9874274999
Q ss_pred HHHHHCCC--CEEEECCH-HHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 01110122--11211201-2457777652025678349995244
Q gi|254780655|r 491 ALRAIPDL--LVLRPADS-IETLECWQVALKEKNRPSVLSLSRQ 531 (673)
Q Consensus 491 ~lr~iPnl--~v~~P~d~-~E~~~~~~~al~~~~gP~~ir~~R~ 531 (673)
+++.+=.. .+-.|.+. ..+..+++.|.... ||++|-+|+.
T Consensus 117 ~~~~~tK~~~~v~~~~~~~~~~~~A~~~A~~~~-GPV~l~iP~D 159 (164)
T cd07039 117 LFKDVAVYNETVTSPEQLPELLDRAIRTAIAKR-GVAVLILPGD 159 (164)
T ss_pred HHHHHHCEEEECCCHHHHHHHHHHHHHHHCCCC-CCEEEECCHH
T ss_conf 989974578885999999999999999854089-9999992879
No 194
>PRK08611 pyruvate oxidase; Provisional
Probab=94.29 E-value=0.16 Score=30.18 Aligned_cols=20 Identities=10% Similarity=0.190 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHCCCCHHHHH
Q ss_conf 88888887511022102220
Q gi|254780655|r 235 AITSTLRKAQLSDKPTMIAC 254 (673)
Q Consensus 235 ~i~~a~~~ak~~~kP~~I~~ 254 (673)
.+.+|++.|....+|++|..
T Consensus 142 ~l~~A~~~A~~~rGPv~l~i 161 (576)
T PRK08611 142 IVNEAIRTAYEKKGVAVLTI 161 (576)
T ss_pred HHHHHHHHHHCCCCCEEEEC
T ss_conf 99999999863899548955
No 195
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=94.24 E-value=0.14 Score=30.59 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHCCCCHHHHH
Q ss_conf 788888887511022102220
Q gi|254780655|r 234 HAITSTLRKAQLSDKPTMIAC 254 (673)
Q Consensus 234 ~~i~~a~~~ak~~~kP~~I~~ 254 (673)
+.+.+|++.|....+|++|..
T Consensus 142 ~~~~~a~~~A~~~~~Pv~l~i 162 (535)
T TIGR03394 142 AEIARVLGSARELSRPVYLEI 162 (535)
T ss_pred HHHHHHHHHHHHCCCCEEEEE
T ss_conf 999999999985479859993
No 196
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=93.75 E-value=0.19 Score=29.51 Aligned_cols=110 Identities=22% Similarity=0.185 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEC-CCHHHHHHHHHHHHHHHHHHCCCEEECCCCCC-CCCCCCCHHHHCC------CCC
Q ss_conf 620023567879987288762200-10035553001245411110000130245433-3333331010002------221
Q gi|254780655|r 419 VREHAMAAAMNGIALHKGLAPYSG-TFMVFSDYSRPAIRLASLMGIRVIHVLTHDSI-GLGEDGPTHQPVE------HLA 490 (673)
Q Consensus 419 IaE~~~~~~aaGla~~~g~~p~~~-tf~~F~~~~~~~ir~~al~~~~v~~v~th~gi-~~G~DGpTHq~ie------dia 490 (673)
--||+++-+|-|.|--.| ..+|. |...=..-+...|-.+-..+.|++++...... ..|.+...||.+. ++.
T Consensus 42 rhE~~A~~mAdgyaR~tg-~gv~~~t~GPG~tN~~tgl~~A~~d~~Pvl~isG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (162)
T cd07038 42 CNELNAGYAADGYARVKG-LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLK 120 (162)
T ss_pred CCHHHHHHHHHHHHHHCC-CEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 764889999999998549-6566655787188899999999983898799968877556525763001126521699999
Q ss_pred HHHHHCC--CCEEEECC-HHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 0111012--21121120-1245777765202567834999524
Q gi|254780655|r 491 ALRAIPD--LLVLRPAD-SIETLECWQVALKEKNRPSVLSLSR 530 (673)
Q Consensus 491 ~lr~iPn--l~v~~P~d-~~E~~~~~~~al~~~~gP~~ir~~R 530 (673)
++|.+-- .+|-.|.+ +..+..+++.|+... ||++|-+||
T Consensus 121 ~~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~-gPV~l~iPr 162 (162)
T cd07038 121 MFEEITCAAARLTDPENAAEEIDRVLRTALRES-RPVYIEIPR 162 (162)
T ss_pred HHHHHEEEEEEECCHHHHHHHHHHHHHHHHHCC-CCEEEECCC
T ss_conf 998673288992999999999999999984289-888996388
No 197
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=93.73 E-value=0.36 Score=27.52 Aligned_cols=32 Identities=13% Similarity=0.146 Sum_probs=15.7
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 972999952688999999999999739943998
Q gi|254780655|r 558 NAQVTIFSSGSELKIAVEACEILSSRNISTRVV 590 (673)
Q Consensus 558 ~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi 590 (673)
..-|.|++=|+..... ..-....++++.+.+|
T Consensus 427 r~Vv~i~GDG~f~m~~-~EL~Ta~r~~lpv~iv 458 (574)
T PRK09124 427 RQVVSLSGDGGFSMLM-GDFLSLVQLKLPVKIV 458 (574)
T ss_pred CCEEEEECCCHHHHHH-HHHHHHHHHCCCCEEE
T ss_conf 9489998862887549-9999999978895899
No 198
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=93.51 E-value=0.62 Score=25.81 Aligned_cols=21 Identities=14% Similarity=0.044 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHCCCCHHHHH
Q ss_conf 788888887511022102220
Q gi|254780655|r 234 HAITSTLRKAQLSDKPTMIAC 254 (673)
Q Consensus 234 ~~i~~a~~~ak~~~kP~~I~~ 254 (673)
..+.+|++.|....+|+.|..
T Consensus 138 ~~l~~A~~~a~~~~GPv~l~i 158 (549)
T PRK06457 138 YIIWRAIREAVSKRGVAHLNL 158 (549)
T ss_pred HHHHHHHHHHHCCCCCEEEEE
T ss_conf 999999998640799989997
No 199
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase; InterPro: IPR011895 The oxidative decarboxylation of pyruvate to acetyl-CoA, a central step in energy metabolism, can occur by two different mechanisms . In mitochondria and aerobic bacteria this reaction is catalysed by the multienzyme complex pyruvate dehydrogenase using NAD as electron acceptor. In anaerobic organisms, however, this reaction is reversibly catalysed by a single enzyme using either ferrodoxin or flavodoxin as the electron acceptor. Pyruvate:ferrodoxin/flavodoxin reductases (PFORs) in this entry occur in both obligately and facultatively anaerobic bacteria and also some eukaryotic microorganisms. These proteins are single-chain enzymes containing a thiamin pyrophosphate cofactor for the cleavage of carbon-carbon bonds next to a carbonyl group, and iron-sulphur clusters for electron transfer. The Desulfovibrio africanus enzyme is currently the only PFOR whose three dimensional structure is known , . It is a homodimer where each subunit contains one thiamin pyrophosphate cofactor and two ferrodoxin-like 4Fe-S clusters and an atypical 4Fe-S cluster. Each monomer is composed of seven domains - domains I, II and VI make intersubunit contacts, while domains III, IV and V are located at the suface of the dimer, and domain VII forms a long arm extending over the other subunit. The cofactor is bound at the interface of domains I and VI and is proximal to the atypical 4Fe-S bound by domain VI, while the ferrodoxin-like 4Fe-S clusters are bound by domain V. Comparison of this enzyme with the multi-chain PFORs shows a correspondance between the domains in this enzyme and the subunits of the multi-chain enzymes.; GO: 0005506 iron ion binding, 0016903 oxidoreductase activity acting on the aldehyde or oxo group of donors, 0006118 electron transport.
Probab=93.00 E-value=0.26 Score=28.54 Aligned_cols=20 Identities=10% Similarity=0.125 Sum_probs=7.7
Q ss_pred HHHHHHHHHHCCCCEEEEECCC
Q ss_conf 9999999997399439985746
Q gi|254780655|r 573 AVEACEILSSRNISTRVVSVPC 594 (673)
Q Consensus 573 al~aa~~L~~~Gi~~~Vi~~~s 594 (673)
-+++.+=|++.|+ =|+|.++
T Consensus 503 ~yDvlkgLKkgGT--FlLNs~w 522 (1194)
T TIGR02176 503 TYDVLKGLKKGGT--FLLNSPW 522 (1194)
T ss_pred HHHHHHCCCCCCE--EEEECCC
T ss_conf 8787613356875--7875466
No 200
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=92.96 E-value=0.58 Score=26.02 Aligned_cols=21 Identities=10% Similarity=0.216 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHCCCCHHHHH
Q ss_conf 788888887511022102220
Q gi|254780655|r 234 HAITSTLRKAQLSDKPTMIAC 254 (673)
Q Consensus 234 ~~i~~a~~~ak~~~kP~~I~~ 254 (673)
..+.+|++.|....+|++|..
T Consensus 139 ~~l~~A~~~A~~~~GPv~l~i 159 (578)
T PRK06546 139 RVLHSAIQHAVAGGGVSVVTL 159 (578)
T ss_pred HHHHHHHHHHHCCCCCEEEEC
T ss_conf 999999999747999879977
No 201
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=92.15 E-value=0.49 Score=26.54 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=39.0
Q ss_pred EECCHHHHHHHHHHHHCC--CCCCEEEEECCCC----CCCCCCCCCCCCCCCCC--------CEEEEECCCCCEEEEECC
Q ss_conf 112012457777652025--6783499952444----43345665532212347--------379985699729999526
Q gi|254780655|r 502 RPADSIETLECWQVALKE--KNRPSVLSLSRQN----LPFLRTQYESNNLCALG--------AYDYISTPNAQVTIFSSG 567 (673)
Q Consensus 502 ~P~d~~E~~~~~~~al~~--~~gP~~ir~~R~~----~p~~~~~~~~~~~~~~G--------~~~~~~~~~~dv~iia~G 567 (673)
.|-..-|++.+=+..++- .-.|.+|....++ +....+. ..|.-+.| +.+.+- ..||.|+|+|
T Consensus 330 MPGSrrEV~NAREEGV~F~FnvQP~~i~~~~~~~~~Gv~~~~t~--~GEPDA~GRRrp~pv~GSE~vl--~ADvvI~AFG 405 (480)
T TIGR01318 330 MPGSRREVANAREEGVEFLFNVQPLEIELDEDGKVIGVKLVRTK--LGEPDAKGRRRPEPVAGSEFVL--PADVVIMAFG 405 (480)
T ss_pred CCCCHHHHCCCHHCCCEEEEEECCEEEEECCCCCEEEEEEECCC--CCCCCCCCCCCCCCCCCCCEEC--CCCEEEEEEC
T ss_conf 78775552661111711321003158887788852335652356--6786777687771047865151--4655897106
Q ss_pred HHHHHHHHHHHHHHHCCCCEE
Q ss_conf 889999999999997399439
Q gi|254780655|r 568 SELKIAVEACEILSSRNISTR 588 (673)
Q Consensus 568 ~~v~~al~aa~~L~~~Gi~~~ 588 (673)
-.- ...+-|+++||++.
T Consensus 406 F~P----~~~pWL~~~gi~~d 422 (480)
T TIGR01318 406 FSP----HAMPWLAEHGITLD 422 (480)
T ss_pred CCC----CCCCHHHHCCEEEC
T ss_conf 789----88644451775563
No 202
>TIGR01504 glyox_carbo_lig glyoxylate carboligase; InterPro: IPR006397 This family represents glyoxylate carboligase, also called tartronate-semialdehyde synthase. It releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism. ; GO: 0009028 tartronate-semialdehyde synthase activity, 0009436 glyoxylate catabolic process.
Probab=91.11 E-value=0.55 Score=26.19 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=13.1
Q ss_pred CEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf 299995268899999999999973
Q gi|254780655|r 560 QVTIFSSGSELKIAVEACEILSSR 583 (673)
Q Consensus 560 dv~iia~G~~v~~al~aa~~L~~~ 583 (673)
+.+=+.--..+..|++-++.|..+
T Consensus 522 ka~rv~~P~~~~~a~~~a~~l~~~ 545 (593)
T TIGR01504 522 KAIRVTKPEELAAALEQAKKLMAE 545 (593)
T ss_pred CEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 068840827789999999999984
No 203
>KOG4166 consensus
Probab=90.17 E-value=0.6 Score=25.94 Aligned_cols=85 Identities=20% Similarity=0.198 Sum_probs=34.9
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC-CHHHHHHH-CCCCCCCCCCCCHH-HHH
Q ss_conf 5999843621143445578876522022330699962763223223556782-17998864-14444444444067-888
Q gi|254780655|r 161 YTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADST-DQYARFRA-SGWNTLSVNGHDHH-AIT 237 (673)
Q Consensus 161 ~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~-~~~~~~~a-~Gw~~~~vdG~d~~-~i~ 237 (673)
-|.+.-|-|+.+-= --+..|=..+ -+|++|-- +.--+---.+.+.+ |+..--++ --|||..-|=.|+. .|.
T Consensus 157 vvlvTSGPGATNvv---tp~ADAlaDg-~PlVvftG--QVptsaIGtDAFQEadiVgisRScTKwNvmVkdVedlPrrI~ 230 (675)
T KOG4166 157 VVLVTSGPGATNVV---TPLADALADG-VPLVVFTG--QVPTSAIGTDAFQEADIVGISRSCTKWNVMVKDVEDLPRRIE 230 (675)
T ss_pred EEEEECCCCCCCCC---CHHHHHHHCC-CCEEEEEC--CCCHHHCCCCHHCCCCEEEEEECCCEEHEEEECHHHHHHHHH
T ss_conf 79982699842332---3566876048-75799936--665132052010027733232021230112100877567888
Q ss_pred HHHHHHHHCCC--CHHH
Q ss_conf 88887511022--1022
Q gi|254780655|r 238 STLRKAQLSDK--PTMI 252 (673)
Q Consensus 238 ~a~~~ak~~~k--P~~I 252 (673)
+||+-|- +++ |+++
T Consensus 231 EAFeiAT-SGRPGPVLV 246 (675)
T KOG4166 231 EAFEIAT-SGRPGPVLV 246 (675)
T ss_pred HHHHHHC-CCCCCCEEE
T ss_conf 7761440-699987686
No 204
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family; InterPro: IPR011896 A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This entry describes the beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes..
Probab=88.65 E-value=0.31 Score=27.99 Aligned_cols=55 Identities=25% Similarity=0.344 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHH---HHHHHCCCCEEEEEECCCCCC
Q ss_conf 1479999999999998534268876784599984362114344557887---652202233069996276322
Q gi|254780655|r 133 GQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAIS---FAGHLGLSKLIVLWDNNGISI 202 (673)
Q Consensus 133 G~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~---~A~~~~l~nli~i~d~N~~si 202 (673)
|=+|+.|+|.-+|-.. =+|+|.=|||++. =|..| .+++.++|-+.+++||.=+.+
T Consensus 56 GRA~P~A~G~KlANP~-----------L~Viv~GGDGD~~----GIG~~Hfva~gRRN~dIt~l~~DN~VYGL 113 (302)
T TIGR02177 56 GRALPVATGIKLANPK-----------LKVIVVGGDGDLY----GIGGNHFVAAGRRNVDITVLVHDNQVYGL 113 (302)
T ss_pred CCCCHHHHHHHHCCCC-----------CEEEEEECCCCCH----HHHHHHHHHHHCCCCCCEEEEECCEECCC
T ss_conf 5631011012010898-----------4689860686410----11057787541147882488424705466
No 205
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004 One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate . 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=88.51 E-value=1.3 Score=23.52 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=8.4
Q ss_pred CCCCHHHHHHHHHHH
Q ss_conf 114344557887652
Q gi|254780655|r 170 CLMEGISQEAISFAG 184 (673)
Q Consensus 170 ~l~eG~~~EAl~~A~ 184 (673)
+.+||..-||+..+.
T Consensus 54 ki~eGd~kgA~~iI~ 68 (462)
T TIGR01316 54 KIKEGDLKGALKIIK 68 (462)
T ss_pred HCCCCCHHHHHHHHC
T ss_conf 302363233333200
No 206
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=88.43 E-value=1.3 Score=23.47 Aligned_cols=96 Identities=16% Similarity=0.189 Sum_probs=48.3
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC-----CCCCCC--CCC----------CCCCHHHHHHHCC
Q ss_conf 45999843621143445578876522022330699962763-----223223--556----------7821799886414
Q gi|254780655|r 160 HYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGI-----SIDGPI--SLA----------DSTDQYARFRASG 222 (673)
Q Consensus 160 ~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~-----si~~~~--~~~----------~~~~~~~~~~a~G 222 (673)
.-+|+|=|||-.- -.-+-++.++=.-+-|--|+++|+--+ |-|+.| ..+ ..-|+....-+||
T Consensus 152 kSvWivGGDGWAY-DIG~gGLdHVLAsG~nVNvLVlDtE~YsNTGgQ~SkaTp~ga~akfa~~Gk~~~KKDl~~iam~~g 230 (365)
T cd03377 152 KSVWIIGGDGWAY-DIGYGGLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMSYG 230 (365)
T ss_pred CCEEEECCCCHHH-HCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHCC
T ss_conf 5358874661232-036311567774589728999658655577753356886404431043576544132999999769
Q ss_pred CCCC-CC-CCCCHHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf 4444-44-4440678888888751102210222013
Q gi|254780655|r 223 WNTL-SV-NGHDHHAITSTLRKAQLSDKPTMIACET 256 (673)
Q Consensus 223 w~~~-~v-dG~d~~~i~~a~~~ak~~~kP~~I~~~T 256 (673)
--|. .| =|-+..+..+|+++|.+-+.|++|++..
T Consensus 231 ~vYVA~va~ga~~~q~lka~~eA~~~~GPs~i~ays 266 (365)
T cd03377 231 NVYVAQIALGANDNQTLKAFREAEAYDGPSLIIAYS 266 (365)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 966999616899999999999986789986998877
No 207
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=84.77 E-value=1.5 Score=22.96 Aligned_cols=22 Identities=23% Similarity=0.638 Sum_probs=12.5
Q ss_pred CCCCCEEEEECCC------CCEEEEECC
Q ss_conf 2347379985699------729999526
Q gi|254780655|r 546 CALGAYDYISTPN------AQVTIFSSG 567 (673)
Q Consensus 546 ~~~G~~~~~~~~~------~dv~iia~G 567 (673)
-..|+|....=+| .|++|||-|
T Consensus 409 ~~~Gk~~~~e~pGsE~~~~AdLVLLAmG 436 (517)
T TIGR01317 409 DEDGKYEFVEVPGSEEVFEADLVLLAMG 436 (517)
T ss_pred CCCCCEEEEEECCCCCCCHHHEEEEECC
T ss_conf 7898288886079752011012332026
No 208
>pfam00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=81.25 E-value=3.6 Score=20.28 Aligned_cols=50 Identities=18% Similarity=0.186 Sum_probs=35.4
Q ss_pred CEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECC--CCCHHCCCCHHHHHHHCCC
Q ss_conf 2999952688999999999999739943998574--6581000868899964367
Q gi|254780655|r 560 QVTIFSSGSELKIAVEACEILSSRNISTRVVSVP--CFELFFEQSDSYRAQIIGS 612 (673)
Q Consensus 560 dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~--s~k~ld~~~~~~~~~il~~ 612 (673)
.++||+.|. .++|.|..|.+.|.+++||... .+..||+...++..+.+.+
T Consensus 1 rv~iiGgG~---ig~E~A~~l~~~G~~Vtiie~~~~~l~~~d~~~~~~~~~~l~~ 52 (82)
T pfam00070 1 RVVVVGGGY---IGLEFASALAKLGSKVTVVERRDRLLRGFDEEIAKILQEKLEK 52 (82)
T ss_pred CEEEECCCH---HHHHHHHHHHHCCCEEEEECCCCCCCHHCCHHHHHHHHHHHHH
T ss_conf 999999889---9999999998639278998125733022798899999999986
No 209
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=80.11 E-value=1.5 Score=23.10 Aligned_cols=12 Identities=8% Similarity=0.285 Sum_probs=6.4
Q ss_pred HHHCCCCCCCHH
Q ss_conf 010032576200
Q gi|254780655|r 411 SGRYLHYGVREH 422 (673)
Q Consensus 411 p~r~i~~GIaE~ 422 (673)
|...|+||-+--
T Consensus 409 pr~wincgqagp 420 (592)
T COG3960 409 PRHWINCGQAGP 420 (592)
T ss_pred CCCEEECCCCCC
T ss_conf 744010476677
No 210
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component; InterPro: IPR010199 This entry describes an NADPH-dependent sulphite reductase flavoprotein subunit. Most members of the proteins of this entry are found in Cys biosynthesis gene clusters. The closest homologues are designated as subunits nitrate reductase.; GO: 0004783 sulfite reductase (NADPH) activity, 0000103 sulfate assimilation, 0019344 cysteine biosynthetic process.
Probab=80.03 E-value=4.2 Score=19.77 Aligned_cols=20 Identities=10% Similarity=-0.074 Sum_probs=8.4
Q ss_pred CEEEEECCCCHHHHHHHHHH
Q ss_conf 77998565201899999997
Q gi|254780655|r 73 DRFVLSAGHGSMLYYALLYL 92 (673)
Q Consensus 73 Dr~v~s~GH~s~~~Y~~~~l 92 (673)
+-=|+|.....-+--..+.|
T Consensus 69 ~vTilygSQTGNAr~~A~~l 88 (628)
T TIGR01931 69 EVTILYGSQTGNARRLAKAL 88 (628)
T ss_pred EEEEEEECCCCHHHHHHHHH
T ss_conf 79999701134278999999
No 211
>PRK13984 putative oxidoreductase; Provisional
Probab=77.57 E-value=4.6 Score=19.52 Aligned_cols=27 Identities=26% Similarity=0.185 Sum_probs=15.7
Q ss_pred EECCHHHHHHHHHHHHCC--CCCCEEEEE
Q ss_conf 112012457777652025--678349995
Q gi|254780655|r 502 RPADSIETLECWQVALKE--KNRPSVLSL 528 (673)
Q Consensus 502 ~P~d~~E~~~~~~~al~~--~~gP~~ir~ 528 (673)
.|++..|+..+....++- .-.|.-|..
T Consensus 462 MPA~~~Ev~~A~EEGV~f~~~~~P~ei~~ 490 (604)
T PRK13984 462 MPADMEEIEEGLEEGVKIYPGWGPMEVVI 490 (604)
T ss_pred CCCCHHHHHHHHHCCCEEEECCCCEEEEE
T ss_conf 89988988999868878994777689994
No 212
>TIGR02483 PFK_mixed phosphofructokinase; InterPro: IPR012829 Members of this family that are characterised, save one, are phosphofructokinases dependent on pyrophosphate (2.7.1.90 from EC) rather than ATP (2.7.1.11 from EC). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.; GO: 0005524 ATP binding, 0008443 phosphofructokinase activity, 0006002 fructose 6-phosphate metabolic process, 0006096 glycolysis.
Probab=75.06 E-value=5.8 Score=18.81 Aligned_cols=108 Identities=21% Similarity=0.202 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHCCCEEE----------CCCCCCCCCCCCCHHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCC-
Q ss_conf 001245411110000130----------245433333333101000222101110122112112012457777652025-
Q gi|254780655|r 451 SRPAIRLASLMGIRVIHV----------LTHDSIGLGEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKE- 519 (673)
Q Consensus 451 ~~~~ir~~al~~~~v~~v----------~th~gi~~G~DGpTHq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~- 519 (673)
|-|-+|.=|-++.+|..+ .=|+|++-|+| .. .|| =.|.|=+++..-++...+.
T Consensus 163 AlDRLhtTAeSH~RVmVvEVMGRhAGWIAL~sG~aGGAd----------~I--LIP----E~P~d~~~v~~~v~~r~~~G 226 (339)
T TIGR02483 163 ALDRLHTTAESHHRVMVVEVMGRHAGWIALHSGIAGGAD----------VI--LIP----EIPFDIDSVCEKVRERFARG 226 (339)
T ss_pred HHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCCC----------EE--EEC----CCCCCHHHHHHHHHHHHHCC
T ss_conf 875240058731948999984854579998843520876----------78--978----60488899999999998726
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCC--CEEEEECCHHHHHHHHHHHHHHHC-CCCEEEE
Q ss_conf 6783499952444433456655322123473799856997--299995268899999999999973-9943998
Q gi|254780655|r 520 KNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTPNA--QVTIFSSGSELKIAVEACEILSSR-NISTRVV 590 (673)
Q Consensus 520 ~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~~~--dv~iia~G~~v~~al~aa~~L~~~-Gi~~~Vi 590 (673)
++=| .|..+=+..|. .....+..+. . ..-. .+.|=+.|..+ |++|++. |+++|++
T Consensus 227 ~~f~-ivVVAEGa~p~-----~G~~~~~~~~---~-d~~g~G~~RLGGiG~~l------A~~i~~rtg~E~R~~ 284 (339)
T TIGR02483 227 KRFA-IVVVAEGAKPK-----GGEMVVQEGV---K-DAFGFGHVRLGGIGNWL------AEEIERRTGIETRAT 284 (339)
T ss_pred CCCC-EEEEECCCCCC-----CCCEEECCCC---C-CCCCCCCEECCCHHHHH------HHHHHHHCCCCEEEE
T ss_conf 6752-58997263267-----8714100564---2-34676650013218899------999998719822035
No 213
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=75.06 E-value=5.4 Score=19.03 Aligned_cols=14 Identities=14% Similarity=0.197 Sum_probs=7.3
Q ss_pred ECCHHHHHHHHHHH
Q ss_conf 12012457777652
Q gi|254780655|r 503 PADSIETLECWQVA 516 (673)
Q Consensus 503 P~d~~E~~~~~~~a 516 (673)
|+...|+..+....
T Consensus 507 PA~~~Ev~~A~EEG 520 (654)
T PRK12769 507 PGSKKEVKNAREEG 520 (654)
T ss_pred CCCHHHHHHHHHCC
T ss_conf 98756655788568
No 214
>PRK12831 putative oxidoreductase; Provisional
Probab=73.17 E-value=6.4 Score=18.49 Aligned_cols=12 Identities=25% Similarity=0.354 Sum_probs=8.4
Q ss_pred CCEEEEECCHHH
Q ss_conf 729999526889
Q gi|254780655|r 559 AQVTIFSSGSEL 570 (673)
Q Consensus 559 ~dv~iia~G~~v 570 (673)
.|.+|+|.|...
T Consensus 385 ~D~Vi~AiGq~~ 396 (464)
T PRK12831 385 VDTVIMSLGTSP 396 (464)
T ss_pred CCEEEECCCCCC
T ss_conf 999999986898
No 215
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=71.25 E-value=7 Score=18.19 Aligned_cols=10 Identities=20% Similarity=0.448 Sum_probs=6.6
Q ss_pred CCEEEEECCH
Q ss_conf 7299995268
Q gi|254780655|r 559 AQVTIFSSGS 568 (673)
Q Consensus 559 ~dv~iia~G~ 568 (673)
.|.+|+|.|.
T Consensus 391 aD~VI~AiGq 400 (472)
T PRK12810 391 ADLVLLAMGF 400 (472)
T ss_pred CCEEEECCCC
T ss_conf 9999998888
No 216
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=70.71 E-value=7.2 Score=18.11 Aligned_cols=57 Identities=11% Similarity=0.121 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC-CCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf 999999999999853426887678459998436-21143445578876522022330699962763223
Q gi|254780655|r 136 IANAVGMAIAERKLREEFGDVLIDHYTYVLVGD-GCLMEGISQEAISFAGHLGLSKLIVLWDNNGISID 203 (673)
Q Consensus 136 is~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGD-G~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~ 203 (673)
+=.++=+++|.+.++. ++.|+..| +-+.++..-+|..+|..++++ ++ +++.+.++..
T Consensus 9 VDSs~la~la~~alG~---------~v~aV~~~s~~~~~~E~e~a~~~a~~~gi~-~~-~i~~~~l~~~ 66 (202)
T cd01990 9 VDSTLLLKAAVDALGD---------RVLAVTATSPLFPRRELEEAKRLAKEIGIR-HE-VIETDELDDP 66 (202)
T ss_pred HHHHHHHHHHHHHHCC---------CEEEEEEECCCCCHHHHHHHHHHHHHCCCC-EE-EEECCHHHHH
T ss_conf 9999999999997687---------879999727989978999999999863985-79-9734111016
No 217
>pfam00656 Peptidase_C14 Caspase domain.
Probab=69.31 E-value=6.6 Score=18.38 Aligned_cols=72 Identities=17% Similarity=0.197 Sum_probs=40.7
Q ss_pred EEEEEECCCCCCCCCCCCC--CCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCC
Q ss_conf 0699962763223223556--78217998864144444444440678888888751102210222013345557
Q gi|254780655|r 191 LIVLWDNNGISIDGPISLA--DSTDQYARFRASGWNTLSVNGHDHHAITSTLRKAQLSDKPTMIACETVIGFGS 262 (673)
Q Consensus 191 li~i~d~N~~si~~~~~~~--~~~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T~kG~G~ 262 (673)
+.+|+++|.+.-..+.... ....+...|+.+||.|...+.=+..++.+++++......+.=..+--+.|+|.
T Consensus 2 ~ALIIgn~~y~~~~~l~g~~~Da~~l~~~l~~lgF~v~~~~n~t~~~~~~~l~~~~~~~~~~d~~vv~~~gHG~ 75 (230)
T pfam00656 2 LALIIGNNYFGHAAPLRGCDNDAEALAELLQRLGFEVEVIDDLTAEEIRRALREFAKRADPGDSFVVVYSGHGV 75 (230)
T ss_pred EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 89999732479964478979999999999998899899960699899999999998547789889999916764
No 218
>TIGR02371 ala_DH_arch alanine dehydrogenase; InterPro: IPR012742 This enzyme, a homologue of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other archaea..
Probab=68.89 E-value=5.5 Score=18.99 Aligned_cols=18 Identities=28% Similarity=0.421 Sum_probs=8.6
Q ss_pred HHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 985342688767845999843621
Q gi|254780655|r 147 RKLREEFGDVLIDHYTYVLVGDGC 170 (673)
Q Consensus 147 k~~~~~~~~~~~d~~v~~iiGDG~ 170 (673)
|||+.| |.+++-+||=|.
T Consensus 122 KYLArk------dssv~G~iGaG~ 139 (327)
T TIGR02371 122 KYLARK------DSSVLGLIGAGR 139 (327)
T ss_pred HHHHHC------CCCEEEEEECCH
T ss_conf 544301------663355763685
No 219
>pfam10740 DUF2529 Protein of unknown function (DUF2529). This family is conserved in the Bacillales. The function is not known. Several members are annotated as being YWJG, a protein expressed downstream of pyrG, a gene encoding for cytidine triphosphate synthetase.
Probab=66.05 E-value=8.9 Score=17.45 Aligned_cols=36 Identities=28% Similarity=0.211 Sum_probs=30.0
Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 997299995268899999999999973994399857
Q gi|254780655|r 557 PNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSV 592 (673)
Q Consensus 557 ~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~ 592 (673)
....|.|++-.+.=.++.+.+++|.++|+++-.|+.
T Consensus 81 ~tDRVLlfs~~~~d~e~~~~a~~L~~~gi~~v~Vs~ 116 (172)
T pfam10740 81 ETDRVLLFSRFSNDEEAVALAKKLYDQGIDVVAVSP 116 (172)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 557699976999978999999999986998899816
No 220
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=65.80 E-value=9 Score=17.42 Aligned_cols=20 Identities=10% Similarity=-0.064 Sum_probs=9.2
Q ss_pred HHHHHHCCCCCCCHHHHHHHHCC
Q ss_conf 99999707688998898640003
Q gi|254780655|r 87 YALLYLLGYQDVTIEDIKNFRTI 109 (673)
Q Consensus 87 Y~~~~l~G~~~~~~e~l~~~r~~ 109 (673)
|..+.-.|.. .+.++.+|+.
T Consensus 62 yi~~i~~g~~---~eA~~~i~~~ 81 (560)
T PRK12771 62 WLALARGGDY---EDAWRRLVED 81 (560)
T ss_pred HHHHHHCCCH---HHHHHHHHHH
T ss_conf 9999987899---9999999874
No 221
>TIGR02482 PFKA_ATP 6-phosphofructokinase; InterPro: IPR012828 6-phosphofructokinase (2.7.1.11 from EC) catalyses the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This entry contains bacterial ATP-dependent 6-phosphofructokinases, which lack a beta-hairpin loop present in IPR012829 from INTERPRO family members. IPR012829 from INTERPRO contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. IPR011183 from INTERPRO represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (2.7.1.90 from EC).; GO: 0003872 6-phosphofructokinase activity, 0005524 ATP binding, 0006002 fructose 6-phosphate metabolic process, 0006096 glycolysis.
Probab=65.20 E-value=5.4 Score=19.01 Aligned_cols=36 Identities=25% Similarity=0.334 Sum_probs=26.7
Q ss_pred CCCCCEEEEECCHHHHHHHHHHHHHH-HC-CCCEEEEE
Q ss_conf 69972999952688999999999999-73-99439985
Q gi|254780655|r 556 TPNAQVTIFSSGSELKIAVEACEILS-SR-NISTRVVS 591 (673)
Q Consensus 556 ~~~~dv~iia~G~~v~~al~aa~~L~-~~-Gi~~~Vi~ 591 (673)
.+...++|++.|..+..+.+.|++++ ++ |+++||.=
T Consensus 211 ~k~~SiI~~ae~~~~g~~~e~A~~iene~~g~~tR~~v 248 (302)
T TIGR02482 211 GKKNSIIIVAEGNILGNAKEVAKKIENEKTGIETRVTV 248 (302)
T ss_pred CCCCCEEEEEEEEECCCHHHHHHHHHCCCCCCEEEEEE
T ss_conf 89961899995101477678887630478984289999
No 222
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=64.75 E-value=9.4 Score=17.29 Aligned_cols=16 Identities=13% Similarity=0.200 Sum_probs=6.9
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 2688999999999999
Q gi|254780655|r 566 SGSELKIAVEACEILS 581 (673)
Q Consensus 566 ~G~~v~~al~aa~~L~ 581 (673)
.|..++.+++=+..|.
T Consensus 294 aGQG~Nlgi~Da~~La 309 (386)
T PRK07494 294 GAQGLNLGLRDVADLV 309 (386)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 2005766699999999
No 223
>PRK11749 putative oxidoreductase; Provisional
Probab=64.01 E-value=9.7 Score=17.19 Aligned_cols=11 Identities=27% Similarity=0.353 Sum_probs=7.2
Q ss_pred CCEEEEECCHH
Q ss_conf 72999952688
Q gi|254780655|r 559 AQVTIFSSGSE 569 (673)
Q Consensus 559 ~dv~iia~G~~ 569 (673)
.|.+|+|.|..
T Consensus 379 aD~Vi~AiG~~ 389 (460)
T PRK11749 379 ADMVIKAIGQT 389 (460)
T ss_pred CCEEEECCCCC
T ss_conf 99999998789
No 224
>TIGR01658 EYA-cons_domain EYA conserved domain; InterPro: IPR006545 The Eyes absent proteins are members of a conserved regulatory network implicated in the development of the eye, muscle, kidney and ear. Eyes absent is a nuclear transcription factor, acting through interaction with homeodomain-containing Sine oculis (also known as Six) proteins. Eyes absent is also a protein tyrosine phosphatase , , It does not resemble the classical tyrosine phosphatases that use cysteine as a nucleophile and proceed by means of a thiol-phosphate intermediate. Rather, Eyes absent is the prototype for a class of protein tyrosine phosphatases that use a nucleophilic aspartic acid in a metal-dependent reaction. Furthermore, the phosphatase activity of Eyes absent contributes to its ability to induce eye formation in drosophila. Thus, Eyes absent belongs to the phosphatase subgroup of the haloacid dehalogenase (HAD) superfamily and appears to act as a nuclear transcriptional coactivator with intrinsic phosphatase activity. The Eyes absent proteins contain a divergent 200300-residue, amino-terminal region and a conserved carboxy-terminal domain of 271274 residues (EYA domain), which is critical for activity and believed to participate in proteinprotein interactions ; GO: 0007275 multicellular organismal development.
Probab=63.47 E-value=5.1 Score=19.19 Aligned_cols=36 Identities=11% Similarity=0.057 Sum_probs=23.7
Q ss_pred EEEEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCH
Q ss_conf 79985699729999526889999999999997399439985746581
Q gi|254780655|r 551 YDYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFEL 597 (673)
Q Consensus 551 ~~~~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ 597 (673)
+++.|=+.|.++.++.|-.-.|+. ||+++ ++|++|.
T Consensus 266 rI~~RF~~Pk~~yv~IGDG~eEe~-AA~~~----------~~PF~kI 301 (319)
T TIGR01658 266 RIKERFGKPKVRYVVIGDGREEET-AAKAM----------NWPFVKI 301 (319)
T ss_pred HHHHHCCCCCEEEEEEECCHHHHH-HHHHH----------CCCEEEE
T ss_conf 444204879158998607818999-99983----------5983898
No 225
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=63.43 E-value=6.2 Score=18.58 Aligned_cols=99 Identities=26% Similarity=0.268 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHH-HHH---HHHCCCEEECCCCCCCCCCCCCHHHHCCCCCHHHHH
Q ss_conf 2002356787998728876220010035553001245-411---110000130245433333333101000222101110
Q gi|254780655|r 420 REHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIR-LAS---LMGIRVIHVLTHDSIGLGEDGPTHQPVEHLAALRAI 495 (673)
Q Consensus 420 aE~~~~~~aaGla~~~g~~p~~~tf~~F~~~~~~~ir-~~a---l~~~~v~~v~th~gi~~G~DGpTHq~iedia~lr~i 495 (673)
||..-++++||..+. |-+|-.-. +-+- .-+.|. +++ .-++|..++.+|-|. ++|+=|.+ +.+=|.+
T Consensus 50 REEeg~GIcAGa~lA-Gkk~ailm--QnsG-lGNsiNal~SL~~ty~iPl~ml~ShRG~-~~E~i~AQ-----VpmGr~~ 119 (172)
T COG4032 50 REEEGVGICAGAYLA-GKKPAILM--QNSG-LGNSINALASLYVTYKIPLLMLASHRGV-LKEGIEAQ-----VPMGRAL 119 (172)
T ss_pred CHHCCEEEEHHHHHC-CCCCEEEE--ECCC-CCHHHHHHHHHHHHHCCCHHHHHHCCCH-HHCCCCCC-----CCCCHHH
T ss_conf 010250210245542-89967988--4367-3168999999998742235552011341-30377313-----6421215
Q ss_pred C------CCCEEEECCHHHHHH----HHHHHHCCCCCCEEEEEC
Q ss_conf 1------221121120124577----776520256783499952
Q gi|254780655|r 496 P------DLLVLRPADSIETLE----CWQVALKEKNRPSVLSLS 529 (673)
Q Consensus 496 P------nl~v~~P~d~~E~~~----~~~~al~~~~gP~~ir~~ 529 (673)
| ++-.+.|-.+.|... ++..+++. ..|+++.++
T Consensus 120 ~kiLe~~~lpt~t~~~p~Ea~~li~~~~~~a~~~-s~pv~vlls 162 (172)
T COG4032 120 PKILEGLELPTYTIIGPEEALPLIENAILDAFEN-SRPVAVLLS 162 (172)
T ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHC-CCCEEEEEC
T ss_conf 8999656886314578888887787899999871-786599945
No 226
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=63.18 E-value=10 Score=17.09 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=9.4
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99843621143445578876522022
Q gi|254780655|r 163 YVLVGDGCLMEGISQEAISFAGHLGL 188 (673)
Q Consensus 163 ~~iiGDG~l~eG~~~EAl~~A~~~~l 188 (673)
++++|-|-+ ..|........++
T Consensus 140 vvViGgG~I----GlE~A~~l~~~G~ 161 (427)
T TIGR03385 140 VVIIGGGYI----GLEMVEALRERGK 161 (427)
T ss_pred EEEECCCHH----HHHHHHHHHHCCC
T ss_conf 999996399----9999999997699
No 227
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=63.05 E-value=10 Score=17.07 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHH
Q ss_conf 68888999999999999999999738897643136899999984332544577898878877998565201899999997
Q gi|254780655|r 13 MKYDDDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSMLYYALLYL 92 (673)
Q Consensus 13 ~~~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~el~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~s~~~Y~~~~l 92 (673)
-++++.| .+.|..+|+.+- +-|.|-.+. += ...||-.. | .--|..+.-
T Consensus 75 ~t~s~~l----~~~R~~~L~~il---~~H~~dC~a--PC-----------~~aCPa~~--d----------Ip~yi~~I~ 122 (652)
T PRK12814 75 ETENAEL----HAMRRQSLERLI---EQHCGDCLG--PC-----------ELACPAGC--N----------IPGFIAAIA 122 (652)
T ss_pred EECCHHH----HHHHHHHHHHHH---HHHCCCCCC--CH-----------HCCCCCCC--C----------HHHHHHHHH
T ss_conf 9589999----999999999997---642684658--10-----------00399999--9----------999999998
Q ss_pred CCCCCCCHHHHHHHHCCC
Q ss_conf 076889988986400038
Q gi|254780655|r 93 LGYQDVTIEDIKNFRTIG 110 (673)
Q Consensus 93 ~G~~~~~~e~l~~~r~~~ 110 (673)
.|.. .+.++-.|+..
T Consensus 123 ~G~~---~eA~~vi~e~n 137 (652)
T PRK12814 123 RGDD---REAIRIIKETI 137 (652)
T ss_pred CCCH---HHHHHHHHHHC
T ss_conf 7899---99999998758
No 228
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=62.43 E-value=10 Score=17.00 Aligned_cols=15 Identities=40% Similarity=0.581 Sum_probs=7.2
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 688999999999999
Q gi|254780655|r 567 GSELKIAVEACEILS 581 (673)
Q Consensus 567 G~~v~~al~aa~~L~ 581 (673)
|..+..+++=+..|.
T Consensus 290 GQGlNlgi~Dv~~L~ 304 (374)
T PRK06617 290 GQGLNQGIKDIEILS 304 (374)
T ss_pred CCCCCHHHHHHHHHH
T ss_conf 260012299999999
No 229
>TIGR02875 spore_0_A sporulation transcription factor Spo0A; InterPro: IPR012052 Members of this group are response regulators/transcription factors that contain CheY-like receiver (phosphoacceptor) domain and a unique DNA-binding domain. Spo0A controls the entry of Bacillus subtilis into the developmental process of sporulation . Activation of the Spo0A transcription factor by phosphorylation serves as a developmental checkpoint and to integrate several physiological signals that control entry into the sporulation pathway. The signals are generated by conditions of nutrient deprivation, high cell density, the Krebs cycle, DNA replication, DNA damage, and some aspect of the chromosome partitioning machinery . Activated Spo0A has multiple functions . It represses promoters (such as the abrB promoter) by binding to sites (0A boxes) downstream from the transcription start site. Spo0A also activates transcription from promoters used by two forms of RNA polymerase that differ by containing either the major sigma factor, sigma A (e.g. the spoIIE and spoIIG promoters) or the alternate sigma factor, sigma H (e.g. the spoIIA promoter). At promoters activated by Spo0A, the 0A boxes lie upstream of the transcription-initiation site.; GO: 0003677 DNA binding, 0005509 calcium ion binding, 0000160 two-component signal transduction system (phosphorelay), 0042173 regulation of sporulation, 0045449 regulation of transcription, 0050906 detection of stimulus during sensory perception.
Probab=62.03 E-value=10 Score=16.95 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=12.8
Q ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf 01245777765202567834999524444334
Q gi|254780655|r 505 DSIETLECWQVALKEKNRPSVLSLSRQNLPFL 536 (673)
Q Consensus 505 d~~E~~~~~~~al~~~~gP~~ir~~R~~~p~~ 536 (673)
.+--+..+.|+|++= -.+||++..+
T Consensus 211 TaSRVERAIRHAIEv-------AWsRG~~E~i 235 (270)
T TIGR02875 211 TASRVERAIRHAIEV-------AWSRGNIELI 235 (270)
T ss_pred CCCHHHHHHHHHHHH-------CCCCCCCCCC
T ss_conf 964466766646342-------0258862101
No 230
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=61.94 E-value=10 Score=16.94 Aligned_cols=106 Identities=18% Similarity=0.134 Sum_probs=45.9
Q ss_pred EEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99856520189999999707688998898640003887988988-88998730688863147999999999999853426
Q gi|254780655|r 75 FVLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPE-YGSCAGIEATTGPLGQGIANAVGMAIAERKLREEF 153 (673)
Q Consensus 75 ~v~s~GH~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe-~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~ 153 (673)
++-.+|+.+.-++..+ -.| ..|..+-+.| |+|. .....-|-+-.|-. |++...-.|.+.+ ..
T Consensus 62 V~q~vGksT~~L~~~l-~~G---------D~i~DivGPL-G~Ps~Ie~~G~Vv~VgGGv--GiApv~PiakaLk---e~- 124 (993)
T PRK12775 62 VVQALGKTTREMRDKF-KAG---------DTFEDFVGPL-GLPQHIDKAGHVVFVGGGL--GVAPIFPQLRAFK---EA- 124 (993)
T ss_pred EEEECCHHHHHHHHHC-CCC---------CEEEECCCCC-CCCCCCCCCCEEEEEECCE--EHHHHHHHHHHHH---HC-
T ss_conf 9996487299999622-589---------8773326679-9964102577399990877--4302389999999---85-
Q ss_pred CCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC
Q ss_conf 88767845999843621143445578876522022330699962763223223
Q gi|254780655|r 154 GDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPI 206 (673)
Q Consensus 154 ~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~ 206 (673)
.++|.+++|--.- +=..||--.-+- .++|++.-||-.+..-|.+
T Consensus 125 -----GN~V~~IiGaR~k-dlvilede~~~~---sdel~i~TDDGS~G~kG~V 168 (993)
T PRK12775 125 -----GARTTAIMGFRNK-DLVFWEDKFREY---ADDLIICTDDGSYGEPGFV 168 (993)
T ss_pred -----CCEEEEEEECCCC-CCEEHHHHHHHH---CCCEEEECCCCCCCCCCEE
T ss_conf -----9908999842660-023349999864---6838997689998756420
No 231
>PRK06184 hypothetical protein; Provisional
Probab=61.74 E-value=11 Score=16.91 Aligned_cols=26 Identities=12% Similarity=0.018 Sum_probs=15.0
Q ss_pred CHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 00100325762002356787998728
Q gi|254780655|r 410 FSGRYLHYGVREHAMAAAMNGIALHK 435 (673)
Q Consensus 410 ~p~r~i~~GIaE~~~~~~aaGla~~~ 435 (673)
+.++=.+.||+-.+.-+.--.+.++|
T Consensus 300 ~gGqGmN~Gi~DA~NLaWKLa~vl~G 325 (503)
T PRK06184 300 AGGQGLNTSIQDAYNLGWKLAAVLAG 325 (503)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 65663333155678899999999729
No 232
>PRK07208 hypothetical protein; Provisional
Probab=59.82 E-value=11 Score=16.68 Aligned_cols=11 Identities=27% Similarity=0.196 Sum_probs=5.2
Q ss_pred HHHHHHHHCCC
Q ss_conf 99999997399
Q gi|254780655|r 575 EACEILSSRNI 585 (673)
Q Consensus 575 ~aa~~L~~~Gi 585 (673)
.+.+.|.+-|+
T Consensus 370 ~~~~~L~~~gl 380 (474)
T PRK07208 370 LATQELASLGL 380 (474)
T ss_pred HHHHHHHHHCC
T ss_conf 99999998089
No 233
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=57.98 E-value=12 Score=16.47 Aligned_cols=93 Identities=19% Similarity=0.276 Sum_probs=51.9
Q ss_pred CCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEE--CCCCCEEE----EECCHH
Q ss_conf 122112112012457777652025678349995244443345665532212347379985--69972999----952688
Q gi|254780655|r 496 PDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYIS--TPNAQVTI----FSSGSE 569 (673)
Q Consensus 496 Pnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~--~~~~dv~i----ia~G~~ 569 (673)
.|+.|+.| |.--+..+-.+|= .-+-|.++.+-|-..+.... ....+.. ..++. =+|.+++| |.+|.
T Consensus 208 ~~~vVVSP-D~Ggv~RA~~~A~-~L~~~laii~KrR~~s~v~~---~~n~i~~--~~~lggdV~GK~~IIvDDmIdTgg- 279 (381)
T PRK06827 208 ENLVVISP-DTGAMDRAKYYSS-VLKVPLGLFYKRRDYSTVVN---GKNPIVV--HELLGRDVEGKDVFIVDDMIASGG- 279 (381)
T ss_pred CCCEEEEC-CCCCHHHHHHHHH-HCCCCEEEEEEECCCCCCCC---CCCCEEE--EEEECCCCCCCEEEEECCCCCCCH-
T ss_conf 77779926-9973899999999-71989899997646764456---6784367--524135567988999724314526-
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCHHC
Q ss_conf 999999999999739943998574658100
Q gi|254780655|r 570 LKIAVEACEILSSRNISTRVVSVPCFELFF 599 (673)
Q Consensus 570 v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld 599 (673)
..++||+.|+++|-+ +|+-+.+.-.|-
T Consensus 280 --Tl~~aA~~Lk~~GA~-~V~a~aTHgvfS 306 (381)
T PRK06827 280 --SVLDAAKELKSRGAK-KIICAVSFPFFT 306 (381)
T ss_pred --HHHHHHHHHHHCCCC-EEEEEEECHHCC
T ss_conf --899999999987998-899999736604
No 234
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=57.89 E-value=12 Score=16.46 Aligned_cols=14 Identities=14% Similarity=0.406 Sum_probs=6.0
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 68899999999999
Q gi|254780655|r 567 GSELKIAVEACEIL 580 (673)
Q Consensus 567 G~~v~~al~aa~~L 580 (673)
|..++.+++=+..|
T Consensus 299 GQG~Nlgl~Da~~L 312 (392)
T PRK08773 299 GQGVNLGLRDVAAL 312 (392)
T ss_pred CCHHHHHHHHHHHH
T ss_conf 55340559999999
No 235
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=57.87 E-value=12 Score=16.46 Aligned_cols=38 Identities=13% Similarity=0.110 Sum_probs=23.6
Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHCCC-CEEEEECCCCCH
Q ss_conf 99729999526889999999999997399-439985746581
Q gi|254780655|r 557 PNAQVTIFSSGSELKIAVEACEILSSRNI-STRVVSVPCFEL 597 (673)
Q Consensus 557 ~~~dv~iia~G~~v~~al~aa~~L~~~Gi-~~~Vi~~~s~k~ 597 (673)
.|.+|++|+-|...--|...|.+| |- +++++.-++.+-
T Consensus 577 ~Gk~VvVIGGGntAmD~artA~Rl---GAe~V~ivyRR~~~e 615 (760)
T PRK12778 577 FGKNVAVIGGGNTAMDSVRTAKRL---GAERAMIIYRRSEEE 615 (760)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCCEEEEEECCCHHC
T ss_conf 698899999976099999999983---998699970377211
No 236
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=57.66 E-value=12 Score=16.43 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=9.9
Q ss_pred EECCHHHHHHHHHHHHC
Q ss_conf 11201245777765202
Q gi|254780655|r 502 RPADSIETLECWQVALK 518 (673)
Q Consensus 502 ~P~d~~E~~~~~~~al~ 518 (673)
.|++..|...+....++
T Consensus 705 MPA~~eEie~A~EEGVe 721 (1012)
T TIGR03315 705 MPASREELEEALEDGVD 721 (1012)
T ss_pred CCCCHHHHHHHHHCCEE
T ss_conf 89998999877753817
No 237
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=57.30 E-value=12 Score=16.39 Aligned_cols=21 Identities=5% Similarity=0.433 Sum_probs=8.0
Q ss_pred EEEECCH---HHHHHHHHHHHHHH
Q ss_conf 9995268---89999999999997
Q gi|254780655|r 562 TIFSSGS---ELKIAVEACEILSS 582 (673)
Q Consensus 562 ~iia~G~---~v~~al~aa~~L~~ 582 (673)
.++++|. .+..+--.++.+++
T Consensus 378 l~~a~GH~~~G~~lap~tg~lvA~ 401 (410)
T PRK12409 378 VFYNTGHGHLGWTLSAATADLVAQ 401 (410)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 999978812577899999999999
No 238
>PRK11595 gluconate periplasmic binding protein; Provisional
Probab=57.10 E-value=13 Score=16.37 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=18.6
Q ss_pred EEECCHHHHHHHHHHHHHHHCCC-CEEEEE
Q ss_conf 99526889999999999997399-439985
Q gi|254780655|r 563 IFSSGSELKIAVEACEILSSRNI-STRVVS 591 (673)
Q Consensus 563 iia~G~~v~~al~aa~~L~~~Gi-~~~Vi~ 591 (673)
+++||+++. ++|+.|.+.|. +|.|+.
T Consensus 196 V~TTGaTl~---~~a~~L~~aGa~~V~v~~ 222 (227)
T PRK11595 196 VVTTGSTVA---EIAQLLLRNGAATVQVWC 222 (227)
T ss_pred CCCCHHHHH---HHHHHHHHHCCCEEEEEE
T ss_conf 146399999---999999980998799999
No 239
>PRK06126 hypothetical protein; Provisional
Probab=56.32 E-value=13 Score=16.28 Aligned_cols=14 Identities=21% Similarity=0.394 Sum_probs=9.4
Q ss_pred HHCCCCEEEEECCC
Q ss_conf 97399439985746
Q gi|254780655|r 581 SSRNISTRVVSVPC 594 (673)
Q Consensus 581 ~~~Gi~~~Vi~~~s 594 (673)
...|+.++|++++.
T Consensus 491 ~~~~~~~~~~~~~~ 504 (545)
T PRK06126 491 AALGVPLAVVDLPR 504 (545)
T ss_pred HHCCCCEEEEECCC
T ss_conf 87198459997676
No 240
>PRK04926 dgt deoxyguanosinetriphosphate triphosphohydrolase; Provisional
Probab=56.22 E-value=13 Score=16.27 Aligned_cols=54 Identities=26% Similarity=0.295 Sum_probs=34.4
Q ss_pred CCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH-HH
Q ss_conf 57789887887799856520189999999707688998898640003887988988889987306888631479999-99
Q gi|254780655|r 63 DPQCPYWPNRDRFVLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANA-VG 141 (673)
Q Consensus 63 ~~~~p~~~~rDr~v~s~GH~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a-~G 141 (673)
|..+|...+|||+|+|. .||++.++|+-||- ++.+++.. .|-|+|=+| +|
T Consensus 27 ~~r~~FerD~dRII~S~-------------------------aFRRLq~KTQVF~l-~~~D~~RT---RLTHSLEVaqIg 77 (503)
T PRK04926 27 EILRIFESDRGRIINSA-------------------------AIRRLQQKTQVFPL-ERNAAVRS---RLTHSLEVQQVG 77 (503)
T ss_pred HHCCCCCCCCCHHHCCH-------------------------HHHHCCCCCEECCC-CCCCCCCC---CHHHHHHHHHHH
T ss_conf 12074011457230678-------------------------77605567704406-99985278---415899999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780655|r 142 MAIA 145 (673)
Q Consensus 142 ~A~a 145 (673)
--+|
T Consensus 78 Rsia 81 (503)
T PRK04926 78 RYIA 81 (503)
T ss_pred HHHH
T ss_conf 9999
No 241
>pfam01494 FAD_binding_3 FAD binding domain. This domain is involved in FAD binding in a number of enzymes.
Probab=56.16 E-value=13 Score=16.26 Aligned_cols=17 Identities=18% Similarity=0.221 Sum_probs=8.9
Q ss_pred CCHHHHHHHHHHHHHHH
Q ss_conf 26889999999999997
Q gi|254780655|r 566 SGSELKIAVEACEILSS 582 (673)
Q Consensus 566 ~G~~v~~al~aa~~L~~ 582 (673)
.|..+..|++=|-.|.+
T Consensus 300 ~GqG~n~aieDA~~La~ 316 (349)
T pfam01494 300 GGQGLNTGIQDAFNLAW 316 (349)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 54677589999999999
No 242
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=55.82 E-value=13 Score=16.23 Aligned_cols=60 Identities=20% Similarity=0.281 Sum_probs=31.0
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECC-C-CCEEE----EECCHHHHHHHHHHHHHHHCCC
Q ss_conf 34999524444334566553221234737998569-9-72999----9526889999999999997399
Q gi|254780655|r 523 PSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTP-N-AQVTI----FSSGSELKIAVEACEILSSRNI 585 (673)
Q Consensus 523 P~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~-~-~dv~i----ia~G~~v~~al~aa~~L~~~Gi 585 (673)
|.+++.-|.+.+...........-..|++.+.... . .+|.| ++||+++. ++++.|++.|+
T Consensus 147 ~~~l~r~k~~~~q~~l~~~~rr~nl~~aF~~~~~~~~~~~vlLvDDV~TTGaTl~---~~~~~L~~~Ga 212 (225)
T COG1040 147 PIALRRVKDTSPQQGLKALERRRNLKGAFRLKKGIEEPKNVLLVDDVYTTGATLK---EAAKLLREAGA 212 (225)
T ss_pred CHHHEECCCCCCCCCCCHHHHHHHCCCCEECCCCCCCCCCEEEEECCCCCHHHHH---HHHHHHHHCCC
T ss_conf 4211000067310045558999846056314787676772899940066679999---99999997599
No 243
>PRK09126 hypothetical protein; Provisional
Probab=55.76 E-value=13 Score=16.22 Aligned_cols=15 Identities=13% Similarity=0.399 Sum_probs=6.4
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 688999999999999
Q gi|254780655|r 567 GSELKIAVEACEILS 581 (673)
Q Consensus 567 G~~v~~al~aa~~L~ 581 (673)
|..++.+++=+..|.
T Consensus 297 GQG~Nlgl~Da~~La 311 (392)
T PRK09126 297 AHGFNLGLASQDILA 311 (392)
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 462757899999999
No 244
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=55.60 E-value=13 Score=16.20 Aligned_cols=14 Identities=29% Similarity=0.074 Sum_probs=7.2
Q ss_pred ECCHHHHHHHHHHH
Q ss_conf 12012457777652
Q gi|254780655|r 503 PADSIETLECWQVA 516 (673)
Q Consensus 503 P~d~~E~~~~~~~a 516 (673)
|++..|...+....
T Consensus 719 PA~~eEie~A~eEG 732 (1032)
T PRK09853 719 PAWREEYEEALHDG 732 (1032)
T ss_pred CCCHHHHHHHHHCC
T ss_conf 99989999887547
No 245
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, catalytic subunit; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain . The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme .; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process, 0009320 phosphoribosylaminoimidazole carboxylase complex.
Probab=55.36 E-value=13 Score=16.17 Aligned_cols=104 Identities=26% Similarity=0.252 Sum_probs=61.1
Q ss_pred EEEEECCHHHHHHHHHHHHHHHCCC--CEEEEECC-CCCHHCCCCHHHHHHHCCCCC-EEE-EECC---CCHHHHHHHHC
Q ss_conf 9999526889999999999997399--43998574-658100086889996436797-799-9728---60278999845
Q gi|254780655|r 561 VTIFSSGSELKIAVEACEILSSRNI--STRVVSVP-CFELFFEQSDSYRAQIIGSSP-IKI-AIEA---GLRQGWDAFIG 632 (673)
Q Consensus 561 v~iia~G~~v~~al~aa~~L~~~Gi--~~~Vi~~~-s~k~ld~~~~~~~~~il~~~~-~~v-tiE~---g~~~g~~~~~~ 632 (673)
.+|.++.|-...+-+|++.|++=|| +++|+|.+ |.+.+ .+|..+.-.++. .+| ++=+ ++++.++....
T Consensus 2 ~iIMGS~SD~~~m~~a~~~L~~fgi~~e~~V~SAHRTP~~~----~~ya~~a~~~G~P~ViIAgAGgaAHLPGmvAa~T~ 77 (159)
T TIGR01162 2 GIIMGSDSDLETMKKAAEILEEFGIPYELRVVSAHRTPELM----FEYAKEAEERGIPKVIIAGAGGAAHLPGMVAALTT 77 (159)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHH----HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC
T ss_conf 68536725478999999999855996678986067780889----99999998678997998403511334010011478
Q ss_pred CCCCEEEE----------C-----------------CCCCCCCHH-HHH--HHCCCCHHHHHHHHHHH
Q ss_conf 79818983----------5-----------------776768888-999--98099989999999998
Q gi|254780655|r 633 SDGSFIGM----------Q-----------------GFGASGSCD-LLY--QHFGINAIAIVDMVERK 670 (673)
Q Consensus 633 ~~~~~igi----------d-----------------~Fg~sg~~~-el~--~~~Gld~~~I~~~i~~~ 670 (673)
.. +||| | ..|..|-.| -|+ +-+|+.-+.+.+|++++
T Consensus 78 ~P--VIGVPv~~~~l~G~DSLlSiVQMP~GvPVATvaig~aGA~NAAllAa~ILa~~~~~l~~kl~~~ 143 (159)
T TIGR01162 78 LP--VIGVPVPSKALSGLDSLLSIVQMPAGVPVATVAIGNAGAKNAALLAAQILAIKDPELAEKLKEY 143 (159)
T ss_pred CC--EEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 77--5503477342452135445430758974653003713278899999999726898899999999
No 246
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=55.01 E-value=14 Score=16.14 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=19.5
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 8459998436211434455788765220223306999627
Q gi|254780655|r 159 DHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNN 198 (673)
Q Consensus 159 d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N 198 (673)
+.|-++|||=|- .-+-|.-.|+..+++ +.++|.+
T Consensus 16 ~gkkV~IIGaGP----aGlsAA~~aa~~G~~--v~viEk~ 49 (350)
T PRK12770 16 TGKKVAIIGAGP----AGLAAAGYLACLGHE--VHVYDKL 49 (350)
T ss_pred CCCEEEEECCCH----HHHHHHHHHHHCCCC--EEEEEEC
T ss_conf 979899999558----899999999978998--5999536
No 247
>TIGR02025 BchH magnesium chelatase, H subunit; InterPro: IPR011771 This entry represents the H subunit of the magnesium chelatase complex responsible for magnesium insertion into the protoporphyrin IX ring in the biosynthesis of both chlorophyll and bacteriochlorophyll. In chlorophyll-utilizing species, this gene is known as ChlH, while in bacteriochlorophyll-utilizing spoecies it is called BchH. Subunit H is the largest (~140kDa) of the three subunits (the others being BchD/ChlD and BchI/ChlI), and is known to bind protoporphyrin IX. Subunit H is homologous to the CobN subunit of cobaltochelatase and by anology with that enzyme, subunit H is believed to also bind the magnesium ion which is inserted into the ring. In conjunction with the hydrolysis of ATP by subunits I and D, a conformation change is believed to happen in subunit H causing the magnesium ion insertion into the distorted protoporphyrin ring .; GO: 0016851 magnesium chelatase activity, 0015995 chlorophyll biosynthetic process.
Probab=54.69 E-value=9.6 Score=17.22 Aligned_cols=60 Identities=20% Similarity=0.238 Sum_probs=40.7
Q ss_pred CEEECCCCCCCC--C-CCCCHHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 013024543333--3-33310100022210111012211211201245777765202567834999
Q gi|254780655|r 465 VIHVLTHDSIGL--G-EDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLS 527 (673)
Q Consensus 465 v~~v~th~gi~~--G-~DGpTHq~iedia~lr~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir 527 (673)
|++++||.++.= | +=|-|-.|==| .++..+||+.+|.==||-|..-|=|-++... -+|+.
T Consensus 652 llHFGtHGslEfMPG~Q~Gltg~CWPD-~LlG~lPnfY~YavNNPSEa~IAKRRg~Atl--vSy~~ 714 (1384)
T TIGR02025 652 LLHFGTHGSLEFMPGKQVGLTGECWPD-RLLGDLPNFYLYAVNNPSEATIAKRRGYATL--VSYLT 714 (1384)
T ss_pred EEEECCCCCEEECCCCCCCCCCCCCCC-HHCCCCCCCEECCCCCHHHHHHHHHHHHHHH--HHHCC
T ss_conf 887457653222677875888777772-0103675100027888037899988652232--43235
No 248
>TIGR01136 cysKM cysteine synthases; InterPro: IPR005856 This model discriminates cysteine synthases (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblance to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded. Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid. In bacteria such two forms of the enzyme are known (genes cysK and cysM). CysM differs from CysK in that it can also use thiosulphate instead of sulphide, to produce cysteine thiosulphonate instead of cysteine. ; GO: 0004124 cysteine synthase activity, 0006535 cysteine biosynthetic process from serine.
Probab=53.92 E-value=10 Score=16.95 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=27.8
Q ss_pred EEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 98569972999952688999999999999739943998574
Q gi|254780655|r 553 YISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVP 593 (673)
Q Consensus 553 ~~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~ 593 (673)
+.+.|| =.+=|++|..|.-|++.|++++..|-+..||-+-
T Consensus 263 LA~~EG-Il~GiSSGAavaAAl~~A~~~~~~G~~k~iV~i~ 302 (315)
T TIGR01136 263 LAREEG-ILVGISSGAAVAAALQVAKRLENKGPGKVIVAIL 302 (315)
T ss_pred HHHHCC-EEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 987468-0662156899999999997322478896699996
No 249
>KOG0029 consensus
Probab=53.71 E-value=14 Score=15.99 Aligned_cols=17 Identities=18% Similarity=0.104 Sum_probs=8.4
Q ss_pred CCCEEEECCHHHHHHHH
Q ss_conf 22112112012457777
Q gi|254780655|r 497 DLLVLRPADSIETLECW 513 (673)
Q Consensus 497 nl~v~~P~d~~E~~~~~ 513 (673)
+...|.|..+.+...++
T Consensus 275 ~~i~F~P~Lp~~k~~aI 291 (501)
T KOG0029 275 GLIEFSPPLPRWKQEAI 291 (501)
T ss_pred CCEEECCCCCHHHHHHH
T ss_conf 86555899957899999
No 250
>pfam07992 Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=53.42 E-value=14 Score=15.96 Aligned_cols=11 Identities=18% Similarity=0.407 Sum_probs=5.7
Q ss_pred CCEEEEECCHH
Q ss_conf 72999952688
Q gi|254780655|r 559 AQVTIFSSGSE 569 (673)
Q Consensus 559 ~dv~iia~G~~ 569 (673)
.|..+++.|..
T Consensus 224 ~d~~~~~~g~~ 234 (277)
T pfam07992 224 ADLVAIGRGPN 234 (277)
T ss_pred EEEEEEEEEEC
T ss_conf 89999997415
No 251
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=53.42 E-value=14 Score=15.96 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=11.1
Q ss_pred HHCCCCHHHHHHHHHHHHCC
Q ss_conf 98099989999999998489
Q gi|254780655|r 654 QHFGINAIAIVDMVERKLSV 673 (673)
Q Consensus 654 ~~~Gld~~~I~~~i~~~L~~ 673 (673)
..-.++++.+.++|+++|.|
T Consensus 303 ~~~~~~~~~v~~~~~~~~~~ 322 (322)
T PRK10964 303 SMANLSAETVFQKLETLISL 322 (322)
T ss_pred CCCCCCHHHHHHHHHHHHCC
T ss_conf 70219999999999997459
No 252
>PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed
Probab=52.92 E-value=15 Score=15.91 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=12.1
Q ss_pred CHHHHHHHCCCCCCCCCC
Q ss_conf 179988641444444444
Q gi|254780655|r 213 DQYARFRASGWNTLSVNG 230 (673)
Q Consensus 213 ~~~~~~~a~Gw~~~~vdG 230 (673)
.+..-+++.||+|.++.|
T Consensus 205 ~Vrr~L~~~GF~v~k~~G 222 (660)
T PRK01747 205 FVRRGLQEAGFTVKKVKG 222 (660)
T ss_pred HHHHHHHHCCCEEEECCC
T ss_conf 999999978966986677
No 253
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=52.77 E-value=15 Score=15.89 Aligned_cols=84 Identities=21% Similarity=0.348 Sum_probs=41.4
Q ss_pred CCEEEEECC-HHHHHHHHHHHHHHHCCCCEE-EEECCC--CCHHCCCCHHHHHHHCCCCCEEEE--ECCCCHHHHHHHHC
Q ss_conf 729999526-889999999999997399439-985746--581000868899964367977999--72860278999845
Q gi|254780655|r 559 AQVTIFSSG-SELKIAVEACEILSSRNISTR-VVSVPC--FELFFEQSDSYRAQIIGSSPIKIA--IEAGLRQGWDAFIG 632 (673)
Q Consensus 559 ~dv~iia~G-~~v~~al~aa~~L~~~Gi~~~-Vi~~~s--~k~ld~~~~~~~~~il~~~~~~vt--iE~g~~~g~~~~~~ 632 (673)
..+-+++.| +-++.|.||+..++.-|+++. ++|+=- +.++-. .-++..+-..+..+|. .|+.+++-++.++.
T Consensus 118 g~vgvlsAGTSDlPvAeEa~~tae~lG~ev~~~~DvGVAGiHRLl~--~l~r~~~~~~~~lIVvAGMEGaLPsvvagLvD 195 (254)
T COG1691 118 GKVGVLSAGTSDLPVAEEAAVTAEELGVEVQKVYDVGVAGIHRLLS--ALKRLKIEDADVLIVVAGMEGALPSVVAGLVD 195 (254)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCHHHHHHH--HHHHHHHHCCCEEEEECCCCCCHHHHHHHCCC
T ss_conf 4699994578776268899999998295678999612302776515--88988750798699983666630788875137
Q ss_pred CCCCEEEEC---CCCCC
Q ss_conf 798189835---77676
Q gi|254780655|r 633 SDGSFIGMQ---GFGAS 646 (673)
Q Consensus 633 ~~~~~igid---~Fg~s 646 (673)
- -+||++ .||..
T Consensus 196 ~--PVIavPTsVGYG~g 210 (254)
T COG1691 196 V--PVIAVPTSVGYGAG 210 (254)
T ss_pred C--CEEECCCCCCCCCC
T ss_conf 8--76724556433768
No 254
>TIGR01703 hybrid_clust hydroxylamine reductase; InterPro: IPR010048 Hybrid cluster proteins (HCP, or Prismane) have been identified in bacteria, archaea and eukaryotic protozoa. No specific function has yet been assigned to these proteins, but it may involve oxidoreductase enzymatic activity. These proteins contain one 4Fe-4S cluster, and one hybrid 4Fe-2O-2S cluster, the latter being similar to the Ni-Fe-S cluster found in carbon monoxide dehydrogenase enzymes (IPR010047 from INTERPRO) , . This subfamily is heterogeneous with respect to the presence or absence of a region of about 100 amino acids not far from the N terminus of the protein. Members have been described as monomeric. ; GO: 0016661 oxidoreductase activity acting on other nitrogenous compounds as donors, 0051536 iron-sulfur cluster binding, 0006118 electron transport, 0005737 cytoplasm.
Probab=52.76 E-value=8.8 Score=17.47 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=27.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHH----CCCCHHHHHCCCCCCCCCC
Q ss_conf 444444406788888887511----0221022201334555700
Q gi|254780655|r 225 TLSVNGHDHHAITSTLRKAQL----SDKPTMIACETVIGFGSPN 264 (673)
Q Consensus 225 ~~~vdG~d~~~i~~a~~~ak~----~~kP~~I~~~T~kG~G~~~ 264 (673)
.|-|.|||+.+|..-|++-+. ++=-+.-|-.....+|||.
T Consensus 248 aILvsGHDL~DL~~LL~QT~gmGle~GinVYTHgEMLPAhgYP~ 291 (567)
T TIGR01703 248 AILVSGHDLKDLEELLEQTEGMGLETGINVYTHGEMLPAHGYPL 291 (567)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHCCCH
T ss_conf 46875688899999999874156445754354653340113861
No 255
>PRK07190 hypothetical protein; Provisional
Probab=51.56 E-value=15 Score=15.76 Aligned_cols=18 Identities=17% Similarity=0.084 Sum_probs=10.3
Q ss_pred CHHHCCCCCCCHHHHHHH
Q ss_conf 001003257620023567
Q gi|254780655|r 410 FSGRYLHYGVREHAMAAA 427 (673)
Q Consensus 410 ~p~r~i~~GIaE~~~~~~ 427 (673)
+.++=.+.||+....-+.
T Consensus 290 ~GGqGmNtGiqDA~NLaW 307 (480)
T PRK07190 290 NGGQGLNTGLADAFNLMW 307 (480)
T ss_pred CCCCCCCCHHHHHHHHHH
T ss_conf 656620111677888999
No 256
>CHL00194 ycf39 Ycf39; Provisional
Probab=50.82 E-value=16 Score=15.68 Aligned_cols=83 Identities=18% Similarity=0.213 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCHHCCCCHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCEEEECCCC
Q ss_conf 268899999999999973-9943998574658100086889996436797799972860278999845798189835776
Q gi|254780655|r 566 SGSELKIAVEACEILSSR-NISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIEAGLRQGWDAFIGSDGSFIGMQGFG 644 (673)
Q Consensus 566 ~G~~v~~al~aa~~L~~~-Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE~g~~~g~~~~~~~~~~~igid~Fg 644 (673)
+|+..-..-|.++.+++. |.+++++.+|-. -- .....++....-...| .=...|.+.++.. . .
T Consensus 203 ~GP~a~T~~EIa~l~~~~~Gk~~~i~~vP~~---~~---~~~~~~~~~f~~~~~i--~~rl~f~ev~~~~-~-------~ 266 (319)
T CHL00194 203 VGPKSWNSSEIISLCEQLSGQKAKVTRIPLF---LL---KLLRRITGFFEWTWNI--SDRLAFAEVLSEG-N-------N 266 (319)
T ss_pred ECCCCCCHHHHHHHHHHHHCCCCCEEECCHH---HH---HHHHHHHHHHHCCHHH--HHHHHHHHHHCCC-C-------C
T ss_conf 4986389999999999985999877868989---99---9999999872334259--9999999996559-8-------6
Q ss_pred CCCCHHHHHHHCCCCHHHHH
Q ss_conf 76888899998099989999
Q gi|254780655|r 645 ASGSCDLLYQHFGINAIAIV 664 (673)
Q Consensus 645 ~sg~~~el~~~~Gld~~~I~ 664 (673)
.+.+.++.|+.+|+|+..+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~ 286 (319)
T CHL00194 267 FSASMADVYKIFKIDSNEIT 286 (319)
T ss_pred CCCCHHHHHHHHCCCCCCCC
T ss_conf 57888999877188922222
No 257
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=50.63 E-value=16 Score=15.66 Aligned_cols=10 Identities=20% Similarity=0.159 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780655|r 572 IAVEACEILS 581 (673)
Q Consensus 572 ~al~aa~~L~ 581 (673)
-|..-++.|.
T Consensus 319 Da~~La~~L~ 328 (413)
T PRK07364 319 DAAALAQVLL 328 (413)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 258
>TIGR00461 gcvP glycine dehydrogenase; InterPro: IPR003437 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T . The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0006544 glycine metabolic process, 0005961 glycine dehydrogenase complex (decarboxylating).
Probab=50.28 E-value=10 Score=17.07 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 99999999997399439985746
Q gi|254780655|r 572 IAVEACEILSSRNISTRVVSVPC 594 (673)
Q Consensus 572 ~al~aa~~L~~~Gi~~~Vi~~~s 594 (673)
+++++|++|-+.|+-+=-++-|-
T Consensus 839 e~~DvAKRL~DyGFHAPT~sfPV 861 (965)
T TIGR00461 839 EALDVAKRLIDYGFHAPTLSFPV 861 (965)
T ss_pred CHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 54456766411577653323367
No 259
>PRK08244 hypothetical protein; Provisional
Probab=50.21 E-value=16 Score=15.61 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=10.0
Q ss_pred CHHHCCCCCCCHHHHHHH
Q ss_conf 001003257620023567
Q gi|254780655|r 410 FSGRYLHYGVREHAMAAA 427 (673)
Q Consensus 410 ~p~r~i~~GIaE~~~~~~ 427 (673)
+.++=.+.||+-.+.-+.
T Consensus 287 ~gGqGmNtGi~DA~NLaW 304 (494)
T PRK08244 287 AGGQGLNVGLQDAMNLGW 304 (494)
T ss_pred CCCCCCCCCHHHHHHHHH
T ss_conf 766651343032454899
No 260
>pfam03853 YjeF_N YjeF-related protein N-terminus.
Probab=50.01 E-value=16 Score=15.59 Aligned_cols=53 Identities=23% Similarity=0.284 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 999999999853426887678459998436211434455788765220223306999
Q gi|254780655|r 139 AVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLW 195 (673)
Q Consensus 139 a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~ 195 (673)
-+|.+.++ .+..++... ..+|+++||=| =++|..+-+..+....+.+-.++++
T Consensus 11 ~Ag~~~a~-~i~~~~~~~--~~~v~il~G~G-NNGGDGlv~Ar~L~~~g~~V~v~~~ 63 (170)
T pfam03853 11 NAGRAVAR-VIRKLLSPA--GKRVLVLCGPG-NNGGDGLAAARHLAQRGYKVTVLLL 63 (170)
T ss_pred HHHHHHHH-HHHHHCCCC--CCEEEEEECCC-CCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 99999999-999861877--88699998799-8728899999999987990799996
No 261
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=49.96 E-value=16 Score=15.59 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=10.4
Q ss_pred CHHHCCCCCCCHHHHHHH
Q ss_conf 001003257620023567
Q gi|254780655|r 410 FSGRYLHYGVREHAMAAA 427 (673)
Q Consensus 410 ~p~r~i~~GIaE~~~~~~ 427 (673)
+.++=.+.||.-...-+.
T Consensus 303 ~gGqGmNtGi~DA~NLaW 320 (554)
T PRK06183 303 FQGQGMNSGIRDAANLAW 320 (554)
T ss_pred CCCCCCCCCHHHHHHHHH
T ss_conf 645655563777999999
No 262
>PRK07608 hypothetical protein; Provisional
Probab=49.64 E-value=16 Score=15.55 Aligned_cols=15 Identities=13% Similarity=0.426 Sum_probs=6.4
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 688999999999999
Q gi|254780655|r 567 GSELKIAVEACEILS 581 (673)
Q Consensus 567 G~~v~~al~aa~~L~ 581 (673)
|..++.+++=|..|.
T Consensus 298 GQG~N~gi~Da~~La 312 (389)
T PRK07608 298 GQGMNLGLRDVAALA 312 (389)
T ss_pred CCCHHHHHHHHHHHH
T ss_conf 333868899999999
No 263
>TIGR00292 TIGR00292 thiazole biosynthesis enzyme; InterPro: IPR002922 This family includes P32318 from SWISSPROT a putative thiamine biosynthetic enzyme . This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.; GO: 0009228 thiamin biosynthetic process.
Probab=48.58 E-value=17 Score=15.44 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=10.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99873068886314799999999
Q gi|254780655|r 121 SCAGIEATTGPLGQGIANAVGMA 143 (673)
Q Consensus 121 ~~~~v~~~tG~lG~gis~a~G~A 143 (673)
+++=+-...||+ ||+.|--+|
T Consensus 21 e~DViiVGAGpS--GLtAAyylA 41 (283)
T TIGR00292 21 ESDVIIVGAGPS--GLTAAYYLA 41 (283)
T ss_pred HCCEEEECCCCC--HHHHHHHHH
T ss_conf 106679878974--668999998
No 264
>PRK05318 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=48.17 E-value=17 Score=15.40 Aligned_cols=55 Identities=25% Similarity=0.349 Sum_probs=34.5
Q ss_pred CCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-HHHH
Q ss_conf 778988788779985652018999999970768899889864000388798898888998730688863147999-9999
Q gi|254780655|r 64 PQCPYWPNRDRFVLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIAN-AVGM 142 (673)
Q Consensus 64 ~~~p~~~~rDr~v~s~GH~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~-a~G~ 142 (673)
-.+|...+|||+|+|. .||++..+|+-||- ...+++. --|-|++=+ .+|-
T Consensus 21 ~R~~f~rD~dRIi~S~-------------------------aFRRL~~KTQVf~~-~~~D~~r---tRLTHSlEVaqi~R 71 (442)
T PRK05318 21 HRSPYQRDRARILHSA-------------------------AFRRLQAKTQVLGV-GENDFYR---TRLTHSLEVAQIGT 71 (442)
T ss_pred CCCCHHHCCCHHHCCH-------------------------HHHCCCCCCEEEEC-CCCCCCC---CCHHHHHHHHHHHH
T ss_conf 9980320423775578-------------------------77614568725317-9998674---82269999999999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780655|r 143 AIAER 147 (673)
Q Consensus 143 A~a~k 147 (673)
.+|..
T Consensus 72 si~~~ 76 (442)
T PRK05318 72 GIVAQ 76 (442)
T ss_pred HHHHH
T ss_conf 99999
No 265
>PRK06834 hypothetical protein; Provisional
Probab=48.16 E-value=17 Score=15.40 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=8.3
Q ss_pred HHHCCCCCCCHHHHHH
Q ss_conf 0100325762002356
Q gi|254780655|r 411 SGRYLHYGVREHAMAA 426 (673)
Q Consensus 411 p~r~i~~GIaE~~~~~ 426 (673)
.++=.+.||+-...-+
T Consensus 281 gGqGmNtGi~DA~NLa 296 (488)
T PRK06834 281 GGQGLNTGVQDAVNLG 296 (488)
T ss_pred CCCCCCCHHHHHHHHH
T ss_conf 4652112377888899
No 266
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=48.05 E-value=17 Score=15.39 Aligned_cols=11 Identities=18% Similarity=0.338 Sum_probs=4.1
Q ss_pred HHHHHCCCCHH
Q ss_conf 99998099989
Q gi|254780655|r 651 LLYQHFGINAI 661 (673)
Q Consensus 651 el~~~~Gld~~ 661 (673)
...+..||..-
T Consensus 364 ~~~R~~gl~~~ 374 (391)
T PRK08020 364 RFARNLGLMAA 374 (391)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999998
No 267
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=48.01 E-value=17 Score=15.38 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=6.2
Q ss_pred EEEECCCCCCCHHHHH
Q ss_conf 9984362114344557
Q gi|254780655|r 163 YVLVGDGCLMEGISQE 178 (673)
Q Consensus 163 ~~iiGDG~l~eG~~~E 178 (673)
++|||-|-+---.+|+
T Consensus 3 v~VIGaGi~Gls~A~~ 18 (365)
T TIGR03364 3 LIIVGAGILGLAHAYA 18 (365)
T ss_pred EEEECCHHHHHHHHHH
T ss_conf 9999932999999999
No 268
>pfam04430 DUF498 Protein of unknown function (DUF498/DUF598). This is a large family of uncharacterized proteins found in all domains of life. The structure shows a novel fold with three beta sheets. A dimeric form is found in the crystal structure. It was suggested that the cleft in between the two monomers might bing nucleic acid.
Probab=47.90 E-value=13 Score=16.37 Aligned_cols=37 Identities=27% Similarity=0.445 Sum_probs=27.2
Q ss_pred CCCCEEEEECCHHHH-HHHHHHHHHHHCCCCEEEEECC
Q ss_conf 997299995268899-9999999999739943998574
Q gi|254780655|r 557 PNAQVTIFSSGSELK-IAVEACEILSSRNISTRVVSVP 593 (673)
Q Consensus 557 ~~~dv~iia~G~~v~-~al~aa~~L~~~Gi~~~Vi~~~ 593 (673)
..+|+.|+++|.... .--+..+.|+++||.+.+-+.+
T Consensus 52 ~~peiliiGtG~~~~~l~~~~~~~l~~~gI~vE~m~T~ 89 (110)
T pfam04430 52 PKPEVLIIGTGARLRFLPPELREALRKLGIGVEVMDTG 89 (110)
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECHH
T ss_conf 99878999559866789999999999759907997759
No 269
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=47.31 E-value=18 Score=15.31 Aligned_cols=28 Identities=0% Similarity=-0.067 Sum_probs=16.1
Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHCCCC
Q ss_conf 997299995268899999999999973994
Q gi|254780655|r 557 PNAQVTIFSSGSELKIAVEACEILSSRNIS 586 (673)
Q Consensus 557 ~~~dv~iia~G~~v~~al~aa~~L~~~Gi~ 586 (673)
++.=+..++.|. ...+.++++|-+.|..
T Consensus 357 ~~~lv~~~~~n~--~~~~~~~r~li~~~~~ 384 (400)
T PRK09754 357 NGVLIGAVTLNQ--GREIRPIRKWIQSGKT 384 (400)
T ss_pred CCEEEEEEEECC--HHHHHHHHHHHHCCCC
T ss_conf 998999998688--3899999999978878
No 270
>KOG3107 consensus
Probab=47.10 E-value=18 Score=15.29 Aligned_cols=19 Identities=11% Similarity=0.048 Sum_probs=10.5
Q ss_pred CCCCEEEEECCHHHHHHHH
Q ss_conf 9972999952688999999
Q gi|254780655|r 557 PNAQVTIFSSGSELKIAVE 575 (673)
Q Consensus 557 ~~~dv~iia~G~~v~~al~ 575 (673)
=|.++..|..|..+.++..
T Consensus 421 Fg~K~~yvvIgdG~eee~a 439 (468)
T KOG3107 421 FGRKVVYVVIGDGVEEEQA 439 (468)
T ss_pred HCCCEEEEEECCCHHHHHH
T ss_conf 6784599996686787788
No 271
>KOG1257 consensus
Probab=46.89 E-value=18 Score=15.26 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=18.6
Q ss_pred CCCCEEEECCHHHHHHHH-HHHHCCCCCCEEEEECCCCCC
Q ss_conf 122112112012457777-652025678349995244443
Q gi|254780655|r 496 PDLLVLRPADSIETLECW-QVALKEKNRPSVLSLSRQNLP 534 (673)
Q Consensus 496 Pnl~v~~P~d~~E~~~~~-~~al~~~~gP~~ir~~R~~~p 534 (673)
+.-.||+=|++....+|. +.|.+..+|- +|.-+-++.|
T Consensus 416 erPiIFalSNPT~~aECtae~ay~~t~Gr-~ifaSGSPF~ 454 (582)
T KOG1257 416 ERPIIFALSNPTSKAECTAEQAYKWTKGR-AIFASGSPFP 454 (582)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHCCCC-EEEECCCCCC
T ss_conf 98658866898622436899985133885-8996189999
No 272
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD; InterPro: IPR014104 Members of this family are encoded by slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. (strain PCC 6803), and close homologues (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyses the first step that is committed to myxoxanthophyll..
Probab=46.74 E-value=18 Score=15.25 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=19.0
Q ss_pred CEEEEECCCCHHHHHHHHCCC-CCEEEE----CCCCC
Q ss_conf 779997286027899984579-818983----57767
Q gi|254780655|r 614 PIKIAIEAGLRQGWDAFIGSD-GSFIGM----QGFGA 645 (673)
Q Consensus 614 ~~~vtiE~g~~~g~~~~~~~~-~~~igi----d~Fg~ 645 (673)
...+=+|.+.+-++++|.+.. |.+=|+ +.||.
T Consensus 420 ~~~~H~ElATPrtF~rwT~Rp~GiVGGlGQ~p~~FGP 456 (499)
T TIGR02733 420 ENWVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGP 456 (499)
T ss_pred CCCCEEECCCCCCCHHCCCCCCCEECCCCCCCCCCCC
T ss_conf 3442234167886000378998204354466676667
No 273
>TIGR01060 eno phosphopyruvate hydratase; InterPro: IPR000941 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate , . In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer . The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex.
Probab=45.33 E-value=19 Score=15.10 Aligned_cols=22 Identities=14% Similarity=0.021 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9975433356688764246763
Q gi|254780655|r 305 WRLAGLRSSQTRADWQERLSSM 326 (673)
Q Consensus 305 ~~~~~~~~~~~~~~w~~~~~~~ 326 (673)
|+....-+.+.+|..++.+++.
T Consensus 172 ~~EAlR~gAEVfH~LK~~L~~~ 193 (430)
T TIGR01060 172 FREALRMGAEVFHALKKLLKEK 193 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6899987899999999998761
No 274
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=45.19 E-value=19 Score=15.08 Aligned_cols=17 Identities=35% Similarity=0.376 Sum_probs=8.1
Q ss_pred CHHHHHHHHHHHHHHHC
Q ss_conf 68899999999999973
Q gi|254780655|r 567 GSELKIAVEACEILSSR 583 (673)
Q Consensus 567 G~~v~~al~aa~~L~~~ 583 (673)
|.-+..+--..+.|++.
T Consensus 341 G~G~~~ap~~G~~lA~l 357 (377)
T PRK11259 341 GHGFKFASVLGEILADL 357 (377)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999
No 275
>pfam03698 UPF0180 Uncharacterized protein family (UPF0180). The members of this family are small uncharacterized proteins.
Probab=45.18 E-value=19 Score=15.08 Aligned_cols=68 Identities=21% Similarity=0.283 Sum_probs=40.9
Q ss_pred HHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCEEEECCCCCCCCHHHHHH
Q ss_conf 99999997399439985746581000868899964367977999728602789998457981898357767688889999
Q gi|254780655|r 575 EACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIEAGLRQGWDAFIGSDGSFIGMQGFGASGSCDLLYQ 654 (673)
Q Consensus 575 ~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE~g~~~g~~~~~~~~~~~igid~Fg~sg~~~el~~ 654 (673)
...+.|+++|++ |+++.+.... -.....+|| |.+.-.+|+.+-...+| +.+
T Consensus 12 ~v~e~L~~~Gy~--Vv~l~~~~~~-----------~~~da~Vit-------------G~d~N~mGi~d~~t~~p---VI~ 62 (80)
T pfam03698 12 NIEEALKEKGYE--VVRLKNEQDA-----------QGCDACVVT-------------GLDSNMMGIEDTVTKAP---VID 62 (80)
T ss_pred HHHHHHHHCCCE--EEECCCCCCC-----------CCCCEEEEE-------------CCCCCCCCCCCCCCCCC---EEE
T ss_conf 999999977987--8867870325-----------665889995-------------89865214413345687---486
Q ss_pred HCCCCHHHHHHHHHHHH
Q ss_conf 80999899999999984
Q gi|254780655|r 655 HFGINAIAIVDMVERKL 671 (673)
Q Consensus 655 ~~Gld~~~I~~~i~~~L 671 (673)
.-|+|++.|++.+++.|
T Consensus 63 A~G~TaeEI~~~ve~rl 79 (80)
T pfam03698 63 ASGLTAEEICQEVEERL 79 (80)
T ss_pred CCCCCHHHHHHHHHHHC
T ss_conf 68999999999999860
No 276
>pfam11843 DUF3363 Protein of unknown function (DUF3363). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 323 to 658 amino acids in length.
Probab=44.81 E-value=19 Score=15.05 Aligned_cols=100 Identities=21% Similarity=0.291 Sum_probs=54.2
Q ss_pred CCCCCHHH-HCCCCCHHHHHCC--CCEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 33331010-0022210111012--21121120124577776520256783499952444433456655322123473799
Q gi|254780655|r 477 GEDGPTHQ-PVEHLAALRAIPD--LLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDY 553 (673)
Q Consensus 477 G~DGpTHq-~iedia~lr~iPn--l~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~ 553 (673)
|-||-||| .+.+...+-..|- +.=++|.+..+....+.. .. .+.+.+. .|..+|. ....-..|+-++
T Consensus 96 GvDGr~hhv~l~~~~~~~~~~~G~IVevr~~~~~~r~~~yDa--~~-~~~v~l~-~~S~l~l------e~Qv~a~GATWL 165 (312)
T pfam11843 96 GVDGRTHHVRLPDGEATGDAPPGGIVEIRSFAELERAAAYDA--RR-RRRVALA-VRSDLSL------EAQVTARGATWL 165 (312)
T ss_pred CCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCHHHHHH--CC-CCCEEEE-EECCCCH------HHHCCCCCCCHH
T ss_conf 578978888668853345689987899787565430202222--14-7841899-8379998------996278886322
Q ss_pred EE----CCCCCEEEEECCHHHHHHHHH-HHHHHHCCCC
Q ss_conf 85----699729999526889999999-9999973994
Q gi|254780655|r 554 IS----TPNAQVTIFSSGSELKIAVEA-CEILSSRNIS 586 (673)
Q Consensus 554 ~~----~~~~dv~iia~G~~v~~al~a-a~~L~~~Gi~ 586 (673)
-+ .+..++.--++|.+|..|++. ++.|.++|.-
T Consensus 166 Drqli~~~~~~l~~~GFG~Evr~Am~~R~~~L~~qGla 203 (312)
T pfam11843 166 DRQLVARDPSDLADGGFGAEVREALDRRREHLIEEGLA 203 (312)
T ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCH
T ss_conf 14453168532355885799999999999999975750
No 277
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III; InterPro: IPR004655 Beta-ketoacyl-acyl carrier protein synthase III (FabH), in general, initiates elongation in type II fatty acid synthase systems found in bacteria and plants. It is responsible for producing the multitude of fatty acid structures found in bacterial membranes . The two members of this subfamily from Bacillus subtilis differ from each other, and from FabH from Escherichia coli, in acyl group specificity. Active site residues include Cys112, His244 and Asn274 of Escherichia coli FabH. Cys-112 is the site of acyl group attachment. ; GO: 0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity, 0006633 fatty acid biosynthetic process.
Probab=44.05 E-value=20 Score=14.96 Aligned_cols=12 Identities=8% Similarity=0.182 Sum_probs=8.1
Q ss_pred CCCCCEEEEECC
Q ss_conf 367977999728
Q gi|254780655|r 610 IGSSPIKIAIEA 621 (673)
Q Consensus 610 l~~~~~~vtiE~ 621 (673)
+..++.++|++-
T Consensus 271 ~~~~~Vv~Tv~k 282 (329)
T TIGR00747 271 LKESKVVKTVHK 282 (329)
T ss_pred CCCCCEEEEEEC
T ss_conf 980316863200
No 278
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=43.89 E-value=20 Score=14.95 Aligned_cols=48 Identities=25% Similarity=0.419 Sum_probs=26.2
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf 0038879889888899873068886314799999999999985342688767845999843621143
Q gi|254780655|r 107 RTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLME 173 (673)
Q Consensus 107 r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~e 173 (673)
|...-+-+|+| .+ + +||.|+|=.. +-|++|.+ ..++ |+.+.||-+|+.
T Consensus 13 R~l~yL~~G~P-vH------l-~GPaG~GKT~-LA~hvA~~-----r~RP-----V~l~~Gd~eL~~ 60 (265)
T TIGR02640 13 RALRYLKSGYP-VH------L-RGPAGTGKTT-LAMHVARK-----RDRP-----VVLINGDAELTT 60 (265)
T ss_pred HHHHHHCCCCC-EE------E-ECCCCCCHHH-HHHHHHHH-----CCCC-----EEEEECCCCCCC
T ss_conf 87663227886-67------4-4788855689-99999973-----6896-----899865823265
No 279
>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G. This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle.
Probab=43.82 E-value=20 Score=14.94 Aligned_cols=64 Identities=11% Similarity=0.147 Sum_probs=34.8
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC-----------CCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 4599984362114344557887652202233069996276322322-----------3556782179988641444444
Q gi|254780655|r 160 HYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGP-----------ISLADSTDQYARFRASGWNTLS 227 (673)
Q Consensus 160 ~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~-----------~~~~~~~~~~~~~~a~Gw~~~~ 227 (673)
+++.++||-+|-. .+--...+|++|+++.+-+.... ..++.. .......-+.+.++.|||+.+.
T Consensus 67 ~~v~a~iGP~Cs~--~~~~va~la~~wniP~iSy~~~s--~~lsdk~~yptf~Rt~p~~~~~~~a~~~ll~~F~W~~va 141 (391)
T cd06372 67 EHISALFGPACPE--AAEVTGLLASQWNIPMFGFVGQT--AKLDNRFLYDTYVKLVPPKQKIGEVLQKSLQHFGWKHIG 141 (391)
T ss_pred CCCEEEECCCCCH--HHHHHHHHHHHCCCCCCCCCCCC--CCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 4962999999806--89999999875275410013356--133677656651321587366799999999961985999
No 280
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=43.67 E-value=20 Score=14.93 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=14.6
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 972999952688999999999999739943998574
Q gi|254780655|r 558 NAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVP 593 (673)
Q Consensus 558 ~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~ 593 (673)
.++++-++.-. ++++++|+++.+...+
T Consensus 335 ~PeiA~VGlte---------~~a~~~G~~~~~~~~~ 361 (441)
T PRK08010 335 TPPLSRVGMTE---------EQARESGADIQVVTLP 361 (441)
T ss_pred CCCEEEEECCH---------HHHHHCCCCEEEEEEE
T ss_conf 76327886899---------9998659988999998
No 281
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase; InterPro: IPR006322 These sequences represent one of two closely related subfamilies of glutathione reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione reductases of animals, yeast, and a number of animal-resident bacteria. ; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=43.41 E-value=20 Score=14.90 Aligned_cols=12 Identities=33% Similarity=0.365 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999997
Q gi|254780655|r 571 KIAVEACEILSS 582 (673)
Q Consensus 571 ~~al~aa~~L~~ 582 (673)
+-|++|=++|++
T Consensus 335 PVAIaAGR~LS~ 346 (475)
T TIGR01421 335 PVAIAAGRKLSE 346 (475)
T ss_pred HHHHHHHHHHHH
T ss_conf 378773036787
No 282
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=43.38 E-value=20 Score=14.89 Aligned_cols=11 Identities=9% Similarity=0.317 Sum_probs=4.5
Q ss_pred EEEEECCHHHH
Q ss_conf 99995268899
Q gi|254780655|r 561 VTIFSSGSELK 571 (673)
Q Consensus 561 v~iia~G~~v~ 571 (673)
+.+=+||....
T Consensus 169 ~VvDaTGHda~ 179 (262)
T COG1635 169 AVVDATGHDAE 179 (262)
T ss_pred EEEECCCCCHH
T ss_conf 99967888428
No 283
>PRK06116 glutathione reductase; Validated
Probab=43.13 E-value=20 Score=14.87 Aligned_cols=34 Identities=15% Similarity=0.278 Sum_probs=16.4
Q ss_pred CCCEEEECCCCCCCCH----HHHHHHCCCCHHHHHHHH
Q ss_conf 9818983577676888----899998099989999999
Q gi|254780655|r 634 DGSFIGMQGFGASGSC----DLLYQHFGINAIAIVDMV 667 (673)
Q Consensus 634 ~~~~igid~Fg~sg~~----~el~~~~Gld~~~I~~~i 667 (673)
.++++|..=+|.+++- -.+.=+.|++.+.+.+.|
T Consensus 399 t~~ILGa~iiG~~A~elI~~~a~Ai~~~~t~~dl~~~i 436 (450)
T PRK06116 399 EEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTV 436 (450)
T ss_pred CCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCC
T ss_conf 79799999989999999999999998789899992367
No 284
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=42.75 E-value=20 Score=14.83 Aligned_cols=24 Identities=8% Similarity=0.029 Sum_probs=11.8
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 010032576200235678799872
Q gi|254780655|r 411 SGRYLHYGVREHAMAAAMNGIALH 434 (673)
Q Consensus 411 p~r~i~~GIaE~~~~~~aaGla~~ 434 (673)
.++=.++||.-...-+.=-++.++
T Consensus 356 gGqGMNtgiqDA~NLgWKLA~Vl~ 379 (634)
T PRK08294 356 AGQGMNVSMQDGFNLGWKLAHVLS 379 (634)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 334413422005555657889871
No 285
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=41.72 E-value=21 Score=14.72 Aligned_cols=35 Identities=26% Similarity=0.452 Sum_probs=21.4
Q ss_pred CCCCCEEEEECCH--HHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 6997299995268--8999999999999739943998
Q gi|254780655|r 556 TPNAQVTIFSSGS--ELKIAVEACEILSSRNISTRVV 590 (673)
Q Consensus 556 ~~~~dv~iia~G~--~v~~al~aa~~L~~~Gi~~~Vi 590 (673)
..++++.||++|. .+..--++.+.|+++||.+.+-
T Consensus 56 ~~~~evlviGTG~~g~l~v~p~~~~~l~~~gi~v~~~ 92 (117)
T cd05126 56 EEGVEVIVIGTGQSGALKVPPETVEKLEKRGVEVLVL 92 (117)
T ss_pred HCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEE
T ss_conf 7199999985896865648999999999759818983
No 286
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=41.60 E-value=18 Score=15.28 Aligned_cols=36 Identities=28% Similarity=0.250 Sum_probs=20.3
Q ss_pred HHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHCCCCCHHHHHCC
Q ss_conf 124541111000013024543333333310100022210111012
Q gi|254780655|r 453 PAIRLASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHLAALRAIPD 497 (673)
Q Consensus 453 ~~ir~~al~~~~v~~v~th~gi~~G~DGpTHq~iedia~lr~iPn 497 (673)
+++|.|=..+.+++.++. +|. |.|=-. =|++..||.
T Consensus 149 ~Fl~~Ai~~~knIii~GG-----TgS-GKTTf~---kal~~~IP~ 184 (328)
T TIGR02788 149 EFLRLAIASRKNIIISGG-----TGS-GKTTFL---KALVKEIPK 184 (328)
T ss_pred HHHHHHHHCCCEEEEEEC-----CCC-HHHHHH---HHHHHCCCC
T ss_conf 999999873891999906-----897-189999---999732762
No 287
>PRK13557 histidine kinase; Provisional
Probab=41.12 E-value=16 Score=15.65 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=14.1
Q ss_pred CEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 779985652018999999970768899889864
Q gi|254780655|r 73 DRFVLSAGHGSMLYYALLYLLGYQDVTIEDIKN 105 (673)
Q Consensus 73 Dr~v~s~GH~s~~~Y~~~~l~G~~~~~~e~l~~ 105 (673)
-+|+|-+ -+...++|| +.|++..
T Consensus 51 g~I~~vN-------~af~~~tGY---s~eEviG 73 (538)
T PRK13557 51 NPIVFAN-------RAFLEMTGY---AAEEIIG 73 (538)
T ss_pred CEEEEEC-------HHHHHHHCC---CHHHHCC
T ss_conf 8799983-------999998795---9999869
No 288
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=40.86 E-value=18 Score=15.30 Aligned_cols=37 Identities=16% Similarity=0.245 Sum_probs=25.1
Q ss_pred CCCCEEEEECCHHHH-HHHHHHHHHHHCCCCEEEEECC
Q ss_conf 997299995268899-9999999999739943998574
Q gi|254780655|r 557 PNAQVTIFSSGSELK-IAVEACEILSSRNISTRVVSVP 593 (673)
Q Consensus 557 ~~~dv~iia~G~~v~-~al~aa~~L~~~Gi~~~Vi~~~ 593 (673)
..+|+.|+++|.... ..-+..+.|+++||.+.+-+-.
T Consensus 51 ~~peilliGtG~~~~~~~~~~~~~l~~~gI~vE~M~T~ 88 (109)
T cd05560 51 LQPEVILLGTGERQRFPPPALLAPLLARGIGVEVMDTQ 88 (109)
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEECCH
T ss_conf 79968999448865799999999999859905996769
No 289
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=40.74 E-value=22 Score=14.62 Aligned_cols=94 Identities=16% Similarity=0.310 Sum_probs=54.6
Q ss_pred CEEEE---ECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCCCCCEEE---EECCCCHH----HHHH
Q ss_conf 29999---52688999999999999739943998574658100086889996436797799---97286027----8999
Q gi|254780655|r 560 QVTIF---SSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKI---AIEAGLRQ----GWDA 629 (673)
Q Consensus 560 dv~ii---a~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~v---tiE~g~~~----g~~~ 629 (673)
.|.|+ .+|+.-..|-..++-|.+.|+++.++++.+-.+ .+.+..++.....+| |++.+... .+..
T Consensus 248 ~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~~~-----~eI~~~i~~a~~~vvGsPT~~~~~~p~i~~~l~~ 322 (388)
T COG0426 248 KVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDADP-----SEIVEEILDAKGLVVGSPTINGGAHPPIQTALGY 322 (388)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCH-----HHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHH
T ss_conf 17999842237879999999877611599629999155889-----9999998753779995686468879219999999
Q ss_pred HH--CCCCCEEEE-CCCCCCCCH----HHHHHHCCC
Q ss_conf 84--579818983-577676888----899998099
Q gi|254780655|r 630 FI--GSDGSFIGM-QGFGASGSC----DLLYQHFGI 658 (673)
Q Consensus 630 ~~--~~~~~~igi-d~Fg~sg~~----~el~~~~Gl 658 (673)
.. ..+.+..++ -.||-+|-. .+.++..|+
T Consensus 323 v~~~~~~~k~~~vfgS~GW~g~av~~i~~~l~~~g~ 358 (388)
T COG0426 323 VLALAPKNKLAGVFGSYGWSGEAVDLIEEKLKDLGF 358 (388)
T ss_pred HHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCC
T ss_conf 974358785599996478787507899999986596
No 290
>PRK05290 hydroxylamine reductase; Provisional
Probab=40.60 E-value=17 Score=15.40 Aligned_cols=39 Identities=21% Similarity=0.317 Sum_probs=27.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCC
Q ss_conf 444444067888888875110221022201334555700
Q gi|254780655|r 226 LSVNGHDHHAITSTLRKAQLSDKPTMIACETVIGFGSPN 264 (673)
Q Consensus 226 ~~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T~kG~G~~~ 264 (673)
|-|.|||+..+...+++.+..+--+.-|......+|+|.
T Consensus 235 ILVSGHDL~DLe~LL~QTeg~GInVYTHgEMLPAH~YP~ 273 (540)
T PRK05290 235 ILVSGHDLKDLEELLEQTEGTGINVYTHGEMLPAHGYPE 273 (540)
T ss_pred EEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
T ss_conf 999698989999999974078857986665442456801
No 291
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor. Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.
Probab=40.60 E-value=22 Score=14.60 Aligned_cols=62 Identities=19% Similarity=0.208 Sum_probs=31.2
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC----------CCCCCCCCCHHHHHHHCCCC
Q ss_conf 59998436211434455788765220223306999627632232----------23556782179988641444
Q gi|254780655|r 161 YTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDG----------PISLADSTDQYARFRASGWN 224 (673)
Q Consensus 161 ~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~----------~~~~~~~~~~~~~~~a~Gw~ 224 (673)
++.+++|-||-. .+--...+|++|+++-+-.-...-..+-+. +.......-+.+.++.|||.
T Consensus 73 ~~~~~~GP~C~~--~~~~va~~a~~wniP~iS~g~~s~~~s~k~~~ypT~~Rt~p~~~~~~~~~~~ll~~f~Wt 144 (399)
T cd06384 73 DPDVFFGPGCVY--PTASVARFATHWRLPLITAGAPAFGFSNKTDEYRTTVRTGPSTTKLGEFVNHLHEHFNWT 144 (399)
T ss_pred CCCEEECCCCHH--HHHHHHHHHHCCCCEEEECCCCCHHHCCCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 872999999717--889999998516871771166874431554447745762674888999999999976994
No 292
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=40.56 E-value=17 Score=15.39 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=26.4
Q ss_pred CCCCEEEEECCHHHHH-HHHHHHHHHHCCCCEEEEECC
Q ss_conf 9972999952688999-999999999739943998574
Q gi|254780655|r 557 PNAQVTIFSSGSELKI-AVEACEILSSRNISTRVVSVP 593 (673)
Q Consensus 557 ~~~dv~iia~G~~v~~-al~aa~~L~~~Gi~~~Vi~~~ 593 (673)
..+|+.||++|..... .-+..+.|++.||.+.+.|.+
T Consensus 53 p~peilliGtG~~~~~~~~~~~~~l~~~gI~vE~M~T~ 90 (114)
T cd05125 53 PRPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVDTR 90 (114)
T ss_pred CCCCEEEECCCCCCCCCCHHHHHHHHHCCCEEEEECHH
T ss_conf 99999998669987789999999999759917995839
No 293
>PRK10565 hypothetical protein; Provisional
Probab=40.51 E-value=22 Score=14.59 Aligned_cols=52 Identities=21% Similarity=0.237 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 999999998534268876784599984362114344557887652202233069996
Q gi|254780655|r 140 VGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWD 196 (673)
Q Consensus 140 ~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d 196 (673)
.|.|.++- +..++.. ..+++++||-|- ++|..|-+..+....+.+--++.+.
T Consensus 45 Ag~a~a~~-i~~~~~~---~~~v~VlcG~GN-NGGDG~v~AR~L~~~G~~V~v~~~~ 96 (515)
T PRK10565 45 AGEAAFQV-ARSAYPD---ARHWLVLCGHGN-NGGDGYVVARLAKAAGIDVTLLAQE 96 (515)
T ss_pred HHHHHHHH-HHHHCCC---CCEEEEEECCCC-CHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 99999999-9986799---997999988985-6999999999999779869999967
No 294
>pfam11823 DUF3343 Protein of unknown function (DUF3343). This family of proteins are functionally uncharacterized. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=40.44 E-value=22 Score=14.58 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=24.2
Q ss_pred EEECCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 99526889999999999997399439985746
Q gi|254780655|r 563 IFSSGSELKIAVEACEILSSRNISTRVVSVPC 594 (673)
Q Consensus 563 iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s 594 (673)
|+.+- ..+.|+++-+.|+++|+++++|-+|.
T Consensus 5 ii~F~-st~~a~~~e~~lk~~~i~~~liP~Pr 35 (73)
T pfam11823 5 LITFP-STHHALKAEKLLKKAGIKVKLIPTPR 35 (73)
T ss_pred EEEEC-CHHHHHHHHHHHHHCCCCEEEECCCH
T ss_conf 99988-87999999999988899879957985
No 295
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=40.07 E-value=22 Score=14.55 Aligned_cols=33 Identities=30% Similarity=0.414 Sum_probs=24.8
Q ss_pred CCCCC-----CCHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 36211-----434455788765220223306999627632
Q gi|254780655|r 167 GDGCL-----MEGISQEAISFAGHLGLSKLIVLWDNNGIS 201 (673)
Q Consensus 167 GDG~l-----~eG~~~EAl~~A~~~~l~nli~i~d~N~~s 201 (673)
-+|+. -.|++-|=+.++..++..++||.+ |+|=
T Consensus 111 ~~g~~e~g~~~~~QTreH~~l~~~lGik~iIVav--NKMD 148 (219)
T cd01883 111 RKGEFEAGFEKGGQTREHALLARTLGVKQLIVAV--NKMD 148 (219)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEE--ECCC
T ss_conf 7675103667776599999999984997489999--8753
No 296
>PRK07045 putative monooxygenase; Reviewed
Probab=39.41 E-value=23 Score=14.48 Aligned_cols=16 Identities=25% Similarity=0.495 Sum_probs=7.6
Q ss_pred CHHHHHHHHHHHHHHH
Q ss_conf 6889999999999997
Q gi|254780655|r 567 GSELKIAVEACEILSS 582 (673)
Q Consensus 567 G~~v~~al~aa~~L~~ 582 (673)
|..++.|++=|..|..
T Consensus 302 GQG~N~aieDA~~La~ 317 (388)
T PRK07045 302 GQGMNLAIEDAGELGA 317 (388)
T ss_pred CHHHHHHHHHHHHHHH
T ss_conf 2168789999999999
No 297
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=39.33 E-value=23 Score=14.47 Aligned_cols=52 Identities=23% Similarity=0.253 Sum_probs=32.6
Q ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH-HHHH
Q ss_conf 789887887799856520189999999707688998898640003887988988889987306888631479999-9999
Q gi|254780655|r 65 QCPYWPNRDRFVLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANA-VGMA 143 (673)
Q Consensus 65 ~~p~~~~rDr~v~s~GH~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~a-~G~A 143 (673)
.+|...+|||+|.|. -||++.++|+-||- ++.+++. --|-|+|=+| +|-.
T Consensus 34 Rs~FqrDrdRIihS~-------------------------aFRRLq~KTQVf~~-~~~D~~R---tRLTHSLEVaqi~Rs 84 (428)
T PRK03007 34 RTDFARDRARVLHSA-------------------------ALRRLADKTQVVGP-RDGDTPR---TRLTHSLEVAQIGRG 84 (428)
T ss_pred CCCHHCCCHHHHCCH-------------------------HHHCCCCCCEEEEC-CCCCCCC---CCHHHHHHHHHHHHH
T ss_conf 883002510665358-------------------------77403578666107-9888660---512689999999999
Q ss_pred HH
Q ss_conf 99
Q gi|254780655|r 144 IA 145 (673)
Q Consensus 144 ~a 145 (673)
+|
T Consensus 85 ia 86 (428)
T PRK03007 85 IA 86 (428)
T ss_pred HH
T ss_conf 99
No 298
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=39.03 E-value=17 Score=15.48 Aligned_cols=37 Identities=16% Similarity=0.308 Sum_probs=25.5
Q ss_pred CCCCEEEEECCHHHH-HHHHHHHHHHHCCCCEEEEECC
Q ss_conf 997299995268899-9999999999739943998574
Q gi|254780655|r 557 PNAQVTIFSSGSELK-IAVEACEILSSRNISTRVVSVP 593 (673)
Q Consensus 557 ~~~dv~iia~G~~v~-~al~aa~~L~~~Gi~~~Vi~~~ 593 (673)
..+|+.||++|.... .--+..+.|+++||.+.+-+..
T Consensus 51 ~~peilliGtG~~~~~~~~~~~~~l~~~gI~~E~M~T~ 88 (109)
T cd00248 51 DRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred CCCCEEEECCCCCCCCCCHHHHHHHHHCCCEEEEECHH
T ss_conf 89848998658977789999999999879949996709
No 299
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=39.02 E-value=23 Score=14.43 Aligned_cols=30 Identities=13% Similarity=0.081 Sum_probs=13.5
Q ss_pred CCHHHHHHHCCCCCCCCC-----CCCHHHHHHHHH
Q ss_conf 217998864144444444-----440678888888
Q gi|254780655|r 212 TDQYARFRASGWNTLSVN-----GHDHHAITSTLR 241 (673)
Q Consensus 212 ~~~~~~~~a~Gw~~~~vd-----G~d~~~i~~a~~ 241 (673)
+-..+-.+.+|.++..++ .-|.++|.++++
T Consensus 93 ~R~~~ia~~~g~~v~~l~~~~g~~~~~~~ve~~L~ 127 (368)
T PRK13479 93 ARIAKIAEYLGIAHVVLDTGEDEPPDAAAVEAALA 127 (368)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 99999999819975998789999889999999997
No 300
>PRK05569 flavodoxin; Provisional
Probab=39.02 E-value=23 Score=14.43 Aligned_cols=31 Identities=10% Similarity=0.013 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 2688999999999999739943998574658
Q gi|254780655|r 566 SGSELKIAVEACEILSSRNISTRVVSVPCFE 596 (673)
Q Consensus 566 ~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k 596 (673)
+|++-..|-..++-+++.|++++|.++...+
T Consensus 12 ~GnTe~mA~~IaeG~~~~G~ev~v~~~~~~~ 42 (141)
T PRK05569 12 GGNVEVLANTIADGAKEAGAEVTIKHVADAK 42 (141)
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 6089999999999999769819999842399
No 301
>COG3770 MepA Murein endopeptidase [Cell envelope biogenesis, outer membrane]
Probab=39.02 E-value=22 Score=14.60 Aligned_cols=58 Identities=22% Similarity=0.347 Sum_probs=37.0
Q ss_pred HHHCCCCCCCCC-----CC-CHHHHHHHH-HHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 864144444444-----44-067888888-875110221022201334555700047711033437
Q gi|254780655|r 218 FRASGWNTLSVN-----GH-DHHAITSTL-RKAQLSDKPTMIACETVIGFGSPNRAGTNKVHGSAL 276 (673)
Q Consensus 218 ~~a~Gw~~~~vd-----G~-d~~~i~~a~-~~ak~~~kP~~I~~~T~kG~G~~~~e~~~~~HG~~l 276 (673)
.++-||.|++.| || |+-++++-| ++|+..+-|++++..--+=.|.++..|.. +|..-|
T Consensus 58 ~~g~~~QvmR~~rnR~~GHP~mi~~ierls~~a~~~G~p~lLiGDis~P~GG~~ltGHA-SHQ~GL 122 (284)
T COG3770 58 TDGPGYQVMRLSRNRYWGHPDMIAFIERLSHDAKAIGWPTLLIGDISMPRGGRFLTGHA-SHQIGL 122 (284)
T ss_pred CCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCC-CCCCCC
T ss_conf 88997366763556556883899999998578886589804550245778886666642-000265
No 302
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=38.98 E-value=23 Score=14.43 Aligned_cols=54 Identities=13% Similarity=0.158 Sum_probs=35.5
Q ss_pred EEEEEECCCCCCCCCCCC--CCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 069996276322322355--678217998864144444444440678888888751
Q gi|254780655|r 191 LIVLWDNNGISIDGPISL--ADSTDQYARFRASGWNTLSVNGHDHHAITSTLRKAQ 244 (673)
Q Consensus 191 li~i~d~N~~si~~~~~~--~~~~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ak 244 (673)
+.+|+++..+.-..+..+ ....++...|+.+||.|.....-+..++.+++++..
T Consensus 10 ~alIInn~~F~~~~~R~Gs~~D~~~L~~~f~~LgF~V~~~~nlt~~e~~~~l~~~~ 65 (241)
T smart00115 10 LALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVHVKNNLTAEEMLEELKEFA 65 (241)
T ss_pred EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf 99998353679998799838999999999997899899923899999999999998
No 303
>PRK06370 mercuric reductase; Validated
Probab=38.70 E-value=23 Score=14.40 Aligned_cols=14 Identities=14% Similarity=0.033 Sum_probs=9.0
Q ss_pred HHHCCCCEEEEECC
Q ss_conf 99739943998574
Q gi|254780655|r 580 LSSRNISTRVVSVP 593 (673)
Q Consensus 580 L~~~Gi~~~Vi~~~ 593 (673)
++++|+++.+...+
T Consensus 363 a~~~g~~~~~~~~~ 376 (459)
T PRK06370 363 ARKSGRRVLVGTRP 376 (459)
T ss_pred HHHCCCCEEEEEEE
T ss_conf 98769987999998
No 304
>PRK07589 ornithine cyclodeaminase; Validated
Probab=38.39 E-value=24 Score=14.37 Aligned_cols=78 Identities=23% Similarity=0.317 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 14799999999999985342688767845999843621143445578876522022330699962763223223556782
Q gi|254780655|r 133 GQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADST 212 (673)
Q Consensus 133 G~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~ 212 (673)
=+.+=.|.--|+|.|+|..+ |.++.++||-|.+.+-++ +| +.....+.. |.++|-|.-. .+
T Consensus 108 LTalRTaAaSalAak~LAR~------ds~~l~iIGtG~QA~~Q~-~A--~~~vr~i~~-V~v~~r~~~~---------a~ 168 (346)
T PRK07589 108 LTALRTAATSALAAKYLARP------DSRTMALIGNGAQSEFQA-LA--FKALLGIEE-IRLYDIDPAA---------TA 168 (346)
T ss_pred HHHHHHHHHHHHHHHHHCCC------CCCEEEEECCCHHHHHHH-HH--HHHHCCCCE-EEEEECCHHH---------HH
T ss_conf 77889888999999984578------987699974708899999-99--998589868-9998288799---------99
Q ss_pred CHHHHHHHCCCCCCCCC
Q ss_conf 17998864144444444
Q gi|254780655|r 213 DQYARFRASGWNTLSVN 229 (673)
Q Consensus 213 ~~~~~~~a~Gw~~~~vd 229 (673)
...+++...|+++..++
T Consensus 169 ~~a~~l~~~g~~v~~~~ 185 (346)
T PRK07589 169 KLARNLAGPGLRIVRCR 185 (346)
T ss_pred HHHHHHHHCCCEEEEEC
T ss_conf 99999872698089949
No 305
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=38.10 E-value=24 Score=14.34 Aligned_cols=44 Identities=20% Similarity=0.221 Sum_probs=27.1
Q ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 8988788779985652018999999970768899889864000388798898888998730688863147999
Q gi|254780655|r 66 CPYWPNRDRFVLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIAN 138 (673)
Q Consensus 66 ~p~~~~rDr~v~s~GH~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~lG~gis~ 138 (673)
+|...+|||+|+|. .||++..+|+-||-. +.+++ .--|-|++=+
T Consensus 27 ~~f~rD~dRIi~S~-------------------------afRRL~~KTQVf~~~-~~D~~---rtRLTHSlEV 70 (338)
T PRK01286 27 TEFQRDRDRIIHSK-------------------------AFRRLKHKTQVFINH-EGDHY---RTRLTHTLEV 70 (338)
T ss_pred CCHHHCCHHHHCCH-------------------------HHHCCCCCCEECCCC-CCCCC---CCCHHHHHHH
T ss_conf 81120412776368-------------------------776145677364079-89843---6712599999
No 306
>PRK12310 hydroxylamine reductase; Provisional
Probab=38.05 E-value=20 Score=14.93 Aligned_cols=40 Identities=20% Similarity=0.337 Sum_probs=27.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCC
Q ss_conf 4444444067888888875110221022201334555700
Q gi|254780655|r 225 TLSVNGHDHHAITSTLRKAQLSDKPTMIACETVIGFGSPN 264 (673)
Q Consensus 225 ~~~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T~kG~G~~~ 264 (673)
.|-|.|||+..+..-+++.+..+--+.-|......+|+|.
T Consensus 124 ~ILVSGHDL~dL~~LL~QTeg~GInVYTHgEMLPAH~YP~ 163 (429)
T PRK12310 124 AILVTGHNLKALEELLKQTEGKGINVYTHSEMLPAHGYPE 163 (429)
T ss_pred EEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
T ss_conf 8999798999999999863799930771765441356800
No 307
>PRK08774 consensus
Probab=37.57 E-value=24 Score=14.28 Aligned_cols=11 Identities=0% Similarity=0.256 Sum_probs=3.9
Q ss_pred CHHHHHHHHHH
Q ss_conf 68899999999
Q gi|254780655|r 567 GSELKIAVEAC 577 (673)
Q Consensus 567 G~~v~~al~aa 577 (673)
|..++..++=+
T Consensus 300 GQGlNlGi~Da 310 (402)
T PRK08774 300 AQGFNLGLRDA 310 (402)
T ss_pred HCHHHHHHHHH
T ss_conf 02152569999
No 308
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=37.50 E-value=24 Score=14.27 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=25.4
Q ss_pred CEEEEECCHHH-HHHHHHHHHHHHCCCCEEEEE
Q ss_conf 29999526889-999999999997399439985
Q gi|254780655|r 560 QVTIFSSGSEL-KIAVEACEILSSRNISTRVVS 591 (673)
Q Consensus 560 dv~iia~G~~v-~~al~aa~~L~~~Gi~~~Vi~ 591 (673)
||.|+..|... ..|++.+..|++.|+++.+-.
T Consensus 3 dv~ii~~~~~~~~~a~~i~~~LR~~gi~v~~~~ 35 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDY 35 (91)
T ss_pred EEEEEEECHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 899998186999999999999998899399973
No 309
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=37.18 E-value=25 Score=14.24 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=30.6
Q ss_pred CCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEE-CCCCCHH
Q ss_conf 729999526889999999999997399439985-7465810
Q gi|254780655|r 559 AQVTIFSSGSELKIAVEACEILSSRNISTRVVS-VPCFELF 598 (673)
Q Consensus 559 ~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~-~~s~k~l 598 (673)
..|..++-|..+..++-.++.|++.|.++.+|- .++-..+
T Consensus 751 ~~Vv~vgGGvGiA~vyPiaKalke~GN~V~~IiGaR~kdll 791 (944)
T PRK12779 751 QTVVFCAGGVGLPPVYPIMRAHLRLGNHVTLISGFRAKEFL 791 (944)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEE
T ss_conf 74999915112414469999999859936999723561127
No 310
>cd01914 HCP Hybrid cluster protein (HCP), formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. HCP has three structural domains, an N-terminal alpha-helical domain, and two similar domains comprising a central beta-sheet flanked by alpha-helices. HCP contains two iron-sulfur clusters, one of which is a [Fe4-S4] cubane cluster similar to that of carbon monoxide dehydrogenase (CODH). The second cluster, referred to as the hybrid cluster, is a hybrid [Fe4-S2-O2] center located at the interface of the three domains. Although the hybrid cluster is buried within the protein, it is accessible through a large hydrophobic cavity.
Probab=37.01 E-value=21 Score=14.77 Aligned_cols=40 Identities=20% Similarity=0.305 Sum_probs=26.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCC
Q ss_conf 4444444067888888875110221022201334555700
Q gi|254780655|r 225 TLSVNGHDHHAITSTLRKAQLSDKPTMIACETVIGFGSPN 264 (673)
Q Consensus 225 ~~~vdG~d~~~i~~a~~~ak~~~kP~~I~~~T~kG~G~~~ 264 (673)
.|-|.|||+..+..-+++.+..+--+.-|......+|+|.
T Consensus 119 ~ILVSGHDL~dL~~LL~QTeg~GInVYTHgEMLPAH~YP~ 158 (423)
T cd01914 119 GILVSGHDLKDLEELLEQTEGTGVDVYTHGEMLPAHGYPE 158 (423)
T ss_pred EEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHH
T ss_conf 7999798989999999863799830772766541356810
No 311
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=36.13 E-value=12 Score=16.58 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=16.8
Q ss_pred EECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCC
Q ss_conf 95268899999999999973994399857465810008
Q gi|254780655|r 564 FSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQ 601 (673)
Q Consensus 564 ia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~ 601 (673)
+++|. .+++|.+.|++.|..+ +.+-+ .+|.+
T Consensus 122 iTTG~---Si~eai~~l~~~G~~V--~gv~~--ivDR~ 152 (201)
T COG0461 122 ITTGG---SILEAVEALREAGAEV--VGVAV--IVDRQ 152 (201)
T ss_pred CCCCH---HHHHHHHHHHHCCCEE--EEEEE--EEECC
T ss_conf 16787---6999999999869859--89999--99520
No 312
>PRK06475 salicylate hydroxylase; Provisional
Probab=36.01 E-value=26 Score=14.11 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=9.7
Q ss_pred CCHHHHHHHHHHHHHHH
Q ss_conf 26889999999999997
Q gi|254780655|r 566 SGSELKIAVEACEILSS 582 (673)
Q Consensus 566 ~G~~v~~al~aa~~L~~ 582 (673)
.|.....|+|=|-.|++
T Consensus 308 ~GQGan~aieDA~~LA~ 324 (400)
T PRK06475 308 AAQGAAMAIEDAAALAE 324 (400)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 10137789999999999
No 313
>TIGR01139 cysK cysteine synthase A; InterPro: IPR005859 This model discriminates cysteine synthase A (CysK) and cysteine synthase B (CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblance to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded. Cysteine synthase (O-acetylserine (thiol)-lyase, 2.5.1.47 from EC) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid. In bacteria such two forms of the enzyme are known (genes cysK and cysM). CysK differs from CysM in that it can also use sulphide instead of thiosulphate, to produce cysteine instead of cysteine thiosulphonate. ; GO: 0004124 cysteine synthase activity, 0006535 cysteine biosynthetic process from serine.
Probab=35.66 E-value=26 Score=14.07 Aligned_cols=39 Identities=15% Similarity=0.121 Sum_probs=25.8
Q ss_pred EEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 9856997299995268899999999999973994399857
Q gi|254780655|r 553 YISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSV 592 (673)
Q Consensus 553 ~~~~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~ 592 (673)
+.+.|| =+.=|++|..|.-|++.|++++..|..+=+|-+
T Consensus 262 LA~eEG-iL~GISSGA~vaAAl~~Ak~~~n~dK~iV~i~P 300 (312)
T TIGR01139 262 LAKEEG-ILVGISSGAAVAAALKLAKRLENPDKLIVVILP 300 (312)
T ss_pred HHHHCC-EEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 998678-010155789999999998732488988999827
No 314
>PRK03094 hypothetical protein; Provisional
Probab=35.42 E-value=26 Score=14.05 Aligned_cols=68 Identities=22% Similarity=0.357 Sum_probs=40.8
Q ss_pred HHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCEEEECCCCCCCCHHHHHH
Q ss_conf 99999997399439985746581000868899964367977999728602789998457981898357767688889999
Q gi|254780655|r 575 EACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIEAGLRQGWDAFIGSDGSFIGMQGFGASGSCDLLYQ 654 (673)
Q Consensus 575 ~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE~g~~~g~~~~~~~~~~~igid~Fg~sg~~~el~~ 654 (673)
...+.|+++|++ |+++.+.. . .-.....+|| |.+.-.+|+.+-...+| +.+
T Consensus 12 ~v~~~L~~~GY~--Vv~l~~~~------~-----a~~~Da~ViT-------------G~d~N~mGiqd~~t~~p---VI~ 62 (80)
T PRK03094 12 DVQQALKQKGYE--VVTLNSEQ------D-----AQGCDCCVVT-------------GQDSNVMGIADTSTKGS---VIT 62 (80)
T ss_pred HHHHHHHHCCCE--EEECCCCC------C-----CCCCCEEEEE-------------CCCCCCCCCCCCCCCCC---EEE
T ss_conf 999999977987--89668714------3-----3567889995-------------89765226441345687---486
Q ss_pred HCCCCHHHHHHHHHHHH
Q ss_conf 80999899999999984
Q gi|254780655|r 655 HFGINAIAIVDMVERKL 671 (673)
Q Consensus 655 ~~Gld~~~I~~~i~~~L 671 (673)
.-|+|++.|++.+++.|
T Consensus 63 A~GlTaeEI~~~ve~r~ 79 (80)
T PRK03094 63 ASGLTADEICQQVESRT 79 (80)
T ss_pred CCCCCHHHHHHHHHHHC
T ss_conf 78999999999999861
No 315
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=35.03 E-value=27 Score=14.00 Aligned_cols=13 Identities=8% Similarity=-0.169 Sum_probs=7.0
Q ss_pred HHHHCCCCEEEEE
Q ss_conf 9997399439985
Q gi|254780655|r 579 ILSSRNISTRVVS 591 (673)
Q Consensus 579 ~L~~~Gi~~~Vi~ 591 (673)
+++++|+++.|.-
T Consensus 358 ea~~~g~~~~~~~ 370 (452)
T TIGR03452 358 EAREAGHDITVKI 370 (452)
T ss_pred HHHHCCCCEEEEE
T ss_conf 9997599779999
No 316
>pfam12005 DUF3499 Protein of unknown function (DUF3499). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 125 to 163 amino acids in length.
Probab=34.97 E-value=20 Score=14.98 Aligned_cols=30 Identities=27% Similarity=0.519 Sum_probs=21.0
Q ss_pred HHHHHH-CCCCCCCCC---------CCCHHHHHHHHHHHH
Q ss_conf 998864-144444444---------440678888888751
Q gi|254780655|r 215 YARFRA-SGWNTLSVN---------GHDHHAITSTLRKAQ 244 (673)
Q Consensus 215 ~~~~~a-~Gw~~~~vd---------G~d~~~i~~a~~~ak 244 (673)
..|+.+ .||++++.+ ..|+.+|.+|.+++-
T Consensus 49 a~rlTaP~GW~vvr~~~~~~~~~p~~dDL~ALAdAVREaa 88 (125)
T pfam12005 49 AERLTAPLGWEVVRLAGEFAPAEPDEDDLVALADAVREAA 88 (125)
T ss_pred HHCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 8635688875778604777778977788999999998742
No 317
>TIGR01517 ATPase-IIB_Ca calcium-translocating P-type ATPase, PMCA-type; InterPro: IPR006408 This family describes the P-type ATPase responsible for translocating calcium ions across the plasma membrane of eukaryotes , out of the cell. In some organisms, this type of pump may also be found in vacuolar membranes . In humans and mice, at least, there are multiple isoforms of the PMCA pump with overlapping but not redundant functions. Accordingly, there are no human diseases linked to PMCA defects, although alterations of PMCA function do elicit physiological effects . The calcium P-type ATPases have been characterised as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump .; GO: 0005388 calcium-transporting ATPase activity, 0005509 calcium ion binding, 0005524 ATP binding, 0015085 calcium ion transmembrane transporter activity, 0006816 calcium ion transport, 0016020 membrane.
Probab=34.72 E-value=27 Score=13.97 Aligned_cols=21 Identities=10% Similarity=-0.070 Sum_probs=12.0
Q ss_pred HHCCCCHHHHHHHCCCCCEEEEECC
Q ss_conf 1000868899964367977999728
Q gi|254780655|r 597 LFFEQSDSYRAQIIGSSPIKIAIEA 621 (673)
Q Consensus 597 ~ld~~~~~~~~~il~~~~~~vtiE~ 621 (673)
|.|+|. .--|..-..+|+|.+
T Consensus 615 P~DK~l----LV~L~~~GeVVAVTG 635 (885)
T TIGR01517 615 PLDKQL----LVELKDMGEVVAVTG 635 (885)
T ss_pred CHHHHH----HHHHCCCCCEEEEEC
T ss_conf 633378----784336831899846
No 318
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=34.60 E-value=27 Score=13.96 Aligned_cols=19 Identities=21% Similarity=0.214 Sum_probs=8.5
Q ss_pred HHHHHHHHHHCCCCEEEEE
Q ss_conf 9999999997399439985
Q gi|254780655|r 573 AVEACEILSSRNISTRVVS 591 (673)
Q Consensus 573 al~aa~~L~~~Gi~~~Vi~ 591 (673)
|+.++..|++.|+++=+||
T Consensus 596 ~Vh~~~aLr~~Gye~ImiN 614 (1089)
T TIGR01369 596 CVHAVLALREAGYETIMIN 614 (1089)
T ss_pred HHHHHHHHHHCCCEEEEEE
T ss_conf 8999999987299599997
No 319
>TIGR01466 cobJ_cbiH precorrin-3B C17-methyltransferase; InterPro: IPR006363 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobJ and CbiH precorrin-3B C(17)-methyltransferase (2.1.1.131 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. In the aerobic pathway, once CobG has generated precorrin-3b, CobJ catalyses the methylation of precorrin-3b at C-17 to form precorrin-4 (the extruded methylated C-20 fragment is left attached as an acyl group at C-1) . In the corresponding anaerobic pathway, CbiH carries out this ring contraction, using cobalt-precorrin-3b as a substrate to generate a tetramethylated delta-lactone. These proteins belong to the superfamily of tetrapyrrole (corrin/porphyrin) methylases (IPR000878 from INTERPRO), which includes methylases that use S-adenosylmethionine (S-AdoMet) in the methylation of diverse substrates. A number of other methylases in the cobalamin biosynthesis pathway also belong to this domain superfamily (precorrin-3 methylase, IPR012203 from INTERPRO, IPR012059 from INTERPRO, IPR012382 from INTERPRO, IPR012797 from INTERPRO and others), and a fusion of precorrin-3B C17-methyltransferases with precorrin isomerase is represented by IPR014422 from INTERPRO. Nomenclature note: precorrin-3B C17-methyltransferase is one of the two methyltransferases often referred to as precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, 2.1.1.133 from EC). ; GO: 0008168 methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=34.02 E-value=28 Score=13.89 Aligned_cols=30 Identities=7% Similarity=-0.028 Sum_probs=14.7
Q ss_pred CCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 6997299995268899999999999973994399857465
Q gi|254780655|r 556 TPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCF 595 (673)
Q Consensus 556 ~~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~ 595 (673)
+++.+|.|...+.+-. . ..-....|||.|+
T Consensus 198 R~~e~v~ittL~~l~~-------~---~~~~~~l~DM~T~ 227 (254)
T TIGR01466 198 REDEEVEITTLSELDE-------E---LEKELDLIDMLTT 227 (254)
T ss_pred CCCCEEEEEEHHHCCC-------C---CCCCEEEECCEEE
T ss_conf 9985489976433000-------1---1101334434589
No 320
>PRK04965 nitric oxide reductase; Provisional
Probab=33.87 E-value=28 Score=13.88 Aligned_cols=33 Identities=15% Similarity=0.028 Sum_probs=15.4
Q ss_pred CCCEEEEE-CCCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 47379985-6997299995268899999999999
Q gi|254780655|r 548 LGAYDYIS-TPNAQVTIFSSGSELKIAVEACEIL 580 (673)
Q Consensus 548 ~G~~~~~~-~~~~dv~iia~G~~v~~al~aa~~L 580 (673)
.|-|.... ++|.=+=.+-+|..+.+++.-.++|
T Consensus 342 ~g~~~~~~~~~g~l~G~vl~Gd~~~~~~~l~~~l 375 (378)
T PRK04965 342 QGMVAKAFDEAGQLRGFVVSEDRMKEAFPLLKTL 375 (378)
T ss_pred CCEEEEEECCCCCEEEEEEECHHHHHHHHHHHHC
T ss_conf 9808999946996999999788888777888657
No 321
>KOG1250 consensus
Probab=33.52 E-value=28 Score=13.84 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=27.1
Q ss_pred CHHHHHCCC-CEEEECCHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 101110122-1121120124577776520256783499952
Q gi|254780655|r 490 AALRAIPDL-LVLRPADSIETLECWQVALKEKNRPSVLSLS 529 (673)
Q Consensus 490 a~lr~iPnl-~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~ 529 (673)
+.+|.+-+- .|+.|+.+.-++.++.+.+...+++.++..-
T Consensus 309 aI~~l~edek~vvEpAgaaaLaai~~~~~~~lk~~~vv~il 349 (457)
T KOG1250 309 AILRLFEDEKMVVEPAGAAALAAIYSGKLNHLKGKKVVSIL 349 (457)
T ss_pred HHHHHHHHHHHEECCCHHHHHHHHHHCCCCCCCCCEEEEEC
T ss_conf 99999875200523624988999970565566776077651
No 322
>TIGR00877 purD phosphoribosylamine--glycine ligase; InterPro: IPR000115 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) catalyzes the second step in the de novo biosynthesis of purine: ATP + 5-phosphoribosylamine + glycine = ADP + P_i + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART.; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process.
Probab=32.79 E-value=29 Score=13.76 Aligned_cols=62 Identities=18% Similarity=0.343 Sum_probs=35.8
Q ss_pred HHHHHHHHHHCCCCCCCCC-CCCCCCCCCCCCCC---C-HHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECC-CHHH
Q ss_conf 8865543322034555674-00026663445432---0-010032576200235678799872887622001-0035
Q gi|254780655|r 377 VNDCLPELIGGSADLTGSN-GTKTSQMKAISKSD---F-SGRYLHYGVREHAMAAAMNGIALHKGLAPYSGT-FMVF 447 (673)
Q Consensus 377 i~~~~p~iv~~sADl~~St-~~~~~~~~~~~~~~---~-p~r~i~~GIaE~~~~~~aaGla~~~g~~p~~~t-f~~F 447 (673)
.++.+|++.= +.+ +..+.|++.|++.. + ++. ++.=|+++=+-=++.+|.- .| .||... |..|
T Consensus 222 ~aQDhKR~~e------gD~~GpNTGGMGAYsP~phlL~~~~e-~~~~~~~~I~~pt~~~l~~-eG-~~y~GvLYagl 289 (459)
T TIGR00877 222 PAQDHKRALE------GDKKGPNTGGMGAYSPAPHLLVFTEE-VEKRIAEEIVEPTVKALRK-EG-TPYKGVLYAGL 289 (459)
T ss_pred CCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCEECCCH-HHHHHHHHHHHHHHHHHHH-CC-CCEEEEEEEEE
T ss_conf 2157650466------88878855786330278784423717-8999987778999999985-28-97247874138
No 323
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=32.62 E-value=29 Score=13.74 Aligned_cols=41 Identities=32% Similarity=0.390 Sum_probs=29.6
Q ss_pred CCEEEEE-ECCCC-----CCCHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 8459998-43621-----1434455788765220223306999627632
Q gi|254780655|r 159 DHYTYVL-VGDGC-----LMEGISQEAISFAGHLGLSKLIVLWDNNGIS 201 (673)
Q Consensus 159 d~~v~~i-iGDG~-----l~eG~~~EAl~~A~~~~l~nli~i~d~N~~s 201 (673)
|-.|.|+ +.+|| --+|+.-|-+-+|..++.++|||.+ |.|-
T Consensus 110 D~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVav--NKMD 156 (428)
T COG5256 110 DVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAV--NKMD 156 (428)
T ss_pred CEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEE--ECCC
T ss_conf 6799999888983101436587516789999856975699999--7156
No 324
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=32.25 E-value=16 Score=15.68 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHCCCCHHHHHCC
Q ss_conf 8888888751102210222013
Q gi|254780655|r 235 AITSTLRKAQLSDKPTMIACET 256 (673)
Q Consensus 235 ~i~~a~~~ak~~~kP~~I~~~T 256 (673)
...+|+++||.++||.+++.+.
T Consensus 7 ~~eeal~~Ak~~~KPiml~~~~ 28 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHK 28 (117)
T ss_pred EHHHHHHHHHHHCCCEEEEECC
T ss_conf 5899999999849999999732
No 325
>PRK06847 hypothetical protein; Provisional
Probab=31.98 E-value=30 Score=13.67 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=10.9
Q ss_pred ECCHHHHHHHHHHHHHHH
Q ss_conf 526889999999999997
Q gi|254780655|r 565 SSGSELKIAVEACEILSS 582 (673)
Q Consensus 565 a~G~~v~~al~aa~~L~~ 582 (673)
..|..++.+++=|-.|+.
T Consensus 297 ~~GqG~N~aieDA~~La~ 314 (375)
T PRK06847 297 HLASGAGMAIEDAIVLAE 314 (375)
T ss_pred CHHHHHHHHHHHHHHHHH
T ss_conf 523588899999999999
No 326
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=31.81 E-value=30 Score=13.65 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=17.7
Q ss_pred CCCCCEEEEECC---HHHHHHHHHHH
Q ss_conf 699729999526---88999999999
Q gi|254780655|r 556 TPNAQVTIFSSG---SELKIAVEACE 578 (673)
Q Consensus 556 ~~~~dv~iia~G---~~v~~al~aa~ 578 (673)
+++|||+|||== .++..|+.||+
T Consensus 198 ReDPDvILiGE~RD~ET~~~AL~AAE 223 (350)
T TIGR01420 198 REDPDVILIGEMRDLETVELALTAAE 223 (350)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf 02898899825562789999998742
No 327
>TIGR00963 secA preprotein translocase, SecA subunit; InterPro: IPR000185 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component. . From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) . The chaperone protein SecB is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion . SecA is a cytoplasmic protein of 800 to 960 amino acid residues. Homologs of secA are also encoded in the chloroplast genome of some algae as well as in the nuclear genome of plants . It could be involved in the intraorganellar protein transport into thylakoids.; GO: 0005524 ATP binding, 0006605 protein targeting, 0006886 intracellular protein transport.
Probab=31.57 E-value=29 Score=13.78 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=21.3
Q ss_pred CEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 299995268899999999999973994399857
Q gi|254780655|r 560 QVTIFSSGSELKIAVEACEILSSRNISTRVVSV 592 (673)
Q Consensus 560 dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~ 592 (673)
.=+||||= -|....-.++.|++.||.=.|.|.
T Consensus 436 qPvLvGT~-svE~SE~LS~lL~~~~I~H~VLNA 467 (904)
T TIGR00963 436 QPVLVGTT-SVEKSELLSKLLKERGIPHNVLNA 467 (904)
T ss_pred CCEEEEEC-CHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 98777522-177789999999857898122478
No 328
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=31.52 E-value=30 Score=13.61 Aligned_cols=14 Identities=14% Similarity=0.147 Sum_probs=7.7
Q ss_pred HHHHCCCCEEEEEC
Q ss_conf 99973994399857
Q gi|254780655|r 579 ILSSRNISTRVVSV 592 (673)
Q Consensus 579 ~L~~~Gi~~~Vi~~ 592 (673)
+++++|++..|.-.
T Consensus 364 ~a~~~g~~~~v~~~ 377 (465)
T PRK05249 364 ELTAAKVPYEVGRA 377 (465)
T ss_pred HHHHCCCCEEEEEE
T ss_conf 99976998799999
No 329
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=30.85 E-value=31 Score=13.54 Aligned_cols=11 Identities=27% Similarity=0.157 Sum_probs=4.6
Q ss_pred HCCCCEEEEEC
Q ss_conf 73994399857
Q gi|254780655|r 582 SRNISTRVVSV 592 (673)
Q Consensus 582 ~~Gi~~~Vi~~ 592 (673)
++|+++.+...
T Consensus 363 ~~g~~~~~~~~ 373 (460)
T PRK06292 363 AAGIDYVVGKV 373 (460)
T ss_pred HCCCCEEEEEE
T ss_conf 76997799999
No 330
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.72 E-value=31 Score=13.52 Aligned_cols=54 Identities=24% Similarity=0.286 Sum_probs=36.5
Q ss_pred CCEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8779985652018999999970768899889864000388798898888998730688863
Q gi|254780655|r 72 RDRFVLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPL 132 (673)
Q Consensus 72 rDr~v~s~GH~s~~~Y~~~~l~G~~~~~~e~l~~~r~~~s~~~Ghpe~~~~~~v~~~tG~l 132 (673)
.|-+|.-.||...+-=+.|.-.|++- .-|++-+..|++... .+..|..|.+|+.
T Consensus 4 ~dvvVIGaG~~GL~aAa~LA~~G~~V---~VlE~~~~~GG~a~t----~e~~Gf~fd~G~~ 57 (487)
T COG1233 4 YDVVVIGAGLNGLAAAALLARAGLKV---TVLEKNDRVGGRART----FELDGFRFDTGPS 57 (487)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEE---EEEECCCCCCCCEEE----EEECCEEECCCCH
T ss_conf 62999898878999999999689979---999637888772466----7657779657326
No 331
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=30.39 E-value=21 Score=14.70 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=10.5
Q ss_pred CCEEEECCHHHHHHHHHHHHCCCCC
Q ss_conf 2112112012457777652025678
Q gi|254780655|r 498 LLVLRPADSIETLECWQVALKEKNR 522 (673)
Q Consensus 498 l~v~~P~d~~E~~~~~~~al~~~~g 522 (673)
+.|+.|.|..+...+--.|+++-+.
T Consensus 161 ~ivvkPGD~~kvkDi~i~alesfDR 185 (355)
T PRK11709 161 CIVVKPGDVVKVKDIEIHALDAFDR 185 (355)
T ss_pred EEEECCCCEEEEEEEEEEEECCCCC
T ss_conf 7995489878871269998504562
No 332
>KOG0450 consensus
Probab=30.25 E-value=32 Score=13.47 Aligned_cols=79 Identities=18% Similarity=0.194 Sum_probs=48.0
Q ss_pred EEEEECCCCCC-CHHHHHHHHHHHH--HCCCCEEEEEECCCCCCCC--CCCC--CCCCCHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 99984362114-3445578876522--0223306999627632232--2355--67821799886414444444444067
Q gi|254780655|r 162 TYVLVGDGCLM-EGISQEAISFAGH--LGLSKLIVLWDNNGISIDG--PISL--ADSTDQYARFRASGWNTLSVNGHDHH 234 (673)
Q Consensus 162 v~~iiGDG~l~-eG~~~EAl~~A~~--~~l~nli~i~d~N~~si~~--~~~~--~~~~~~~~~~~a~Gw~~~~vdG~d~~ 234 (673)
-+-+-||++.. .|+.+|.+.+-.- +-..--|-|+-||++.-.+ .... ..++|+++- .+-....|+++|++
T Consensus 404 ~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTDPR~aRSspYcTDvar~---v~aPIFHVNaDD~E 480 (1017)
T KOG0450 404 GILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTDPRFARSSPYCTDVARV---VNAPIFHVNADDPE 480 (1017)
T ss_pred EEEEECCHHHCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHH---HCCCEEEECCCCHH
T ss_conf 899854511036744888614445777656974899972621210486422479873568987---08975765588769
Q ss_pred HHHHHHHHH
Q ss_conf 888888875
Q gi|254780655|r 235 AITSTLRKA 243 (673)
Q Consensus 235 ~i~~a~~~a 243 (673)
++..+.+-|
T Consensus 481 AV~~vc~vA 489 (1017)
T KOG0450 481 AVMHVCKVA 489 (1017)
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 333
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=30.25 E-value=32 Score=13.47 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=10.2
Q ss_pred CCEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf 7299995268899999999999973
Q gi|254780655|r 559 AQVTIFSSGSELKIAVEACEILSSR 583 (673)
Q Consensus 559 ~dv~iia~G~~v~~al~aa~~L~~~ 583 (673)
.++.+||.|+.+.-.+...+.+.+.
T Consensus 104 ~~ivlIAgG~GitP~~s~l~~~~~~ 128 (231)
T cd06215 104 DKLLLLSAGSGITPMMSMARWLLDT 128 (231)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 8789998167778479999999970
No 334
>PRK08132 hypothetical protein; Provisional
Probab=30.05 E-value=32 Score=13.44 Aligned_cols=33 Identities=27% Similarity=0.217 Sum_probs=17.0
Q ss_pred CCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 7299995268899999999999973994399857
Q gi|254780655|r 559 AQVTIFSSGSELKIAVEACEILSSRNISTRVVSV 592 (673)
Q Consensus 559 ~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~ 592 (673)
...+|+..+... .+..+++.+...++.++++.+
T Consensus 455 ~~f~LL~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 487 (549)
T PRK08132 455 GGFTLLLFGSAG-DAAALPQALRGAGIPVRLVLV 487 (549)
T ss_pred CCEEEEEECCCC-CHHHHHHHHHHCCCCEEEEEE
T ss_conf 977999837975-204456666423884489997
No 335
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial; InterPro: IPR012803 Members of this family represent the alpha subunit of the mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (4.2.1.17 from EC) and 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC). Some characterization of these proteins has been done in human (P40939 from SWISSPROT), pig (Q29554 from SWISSPROT) and rat (Q64428 from SWISSPROT). The beta subunit has acetyl-CoA C-acyltransferase (2.3.1.16 from EC) activity.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0004300 enoyl-CoA hydratase activity, 0006635 fatty acid beta-oxidation, 0005739 mitochondrion, 0016507 fatty acid beta-oxidation multienzyme complex.
Probab=30.00 E-value=32 Score=13.44 Aligned_cols=102 Identities=18% Similarity=0.216 Sum_probs=62.8
Q ss_pred ECCCCCCCCCCCCCHHHHCCCCCHHHHHC----CCCEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 02454333333331010002221011101----22112112012457777652025678349995244443345665532
Q gi|254780655|r 468 VLTHDSIGLGEDGPTHQPVEHLAALRAIP----DLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESN 543 (673)
Q Consensus 468 v~th~gi~~G~DGpTHq~iedia~lr~iP----nl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R~~~p~~~~~~~~~ 543 (673)
|..||=|. -.-|=-||.+||.-..=| +|.+|.|-|--|+.+++.+ ++- ++..... ...
T Consensus 442 vp~hciiA---sNTSAlPI~~IAA~S~RPeKViGMHYFSPVdKMQLLEIIT~-----~~T-----SkdT~A~-----Ava 503 (740)
T TIGR02441 442 VPPHCIIA---SNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIITH-----DGT-----SKDTLAS-----AVA 503 (740)
T ss_pred CCCCCEEE---CCCCCCCHHHHCCCCCCCCCEEECCCCCCCCHHCCCEEECC-----CCC-----CHHHHHH-----HHH
T ss_conf 58873572---05553674554144688882130101471011000134548-----898-----7778999-----998
Q ss_pred CCCCCCCEEEEECCCC-CEEEEECCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 2123473799856997-29999526889999999999997399439985
Q gi|254780655|r 544 NLCALGAYDYISTPNA-QVTIFSSGSELKIAVEACEILSSRNISTRVVS 591 (673)
Q Consensus 544 ~~~~~G~~~~~~~~~~-dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~ 591 (673)
-....|+-+++-..++ =-+.-..|+|+.+++ +|-|||++..=+|
T Consensus 504 vGLKQGKvvivVkDgPGFyttRcL~pM~aE~~----RlLQEGvDPk~lD 548 (740)
T TIGR02441 504 VGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVI----RLLQEGVDPKKLD 548 (740)
T ss_pred HHCCCCCEEEEEECCCCCEEEECCHHHHHHHH----HHHHCCCCHHHHH
T ss_conf 41036627999743997457310225799999----9973588868887
No 336
>PRK10310 galactitol-specific PTS system component IIB; Provisional
Probab=29.98 E-value=32 Score=13.44 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=23.6
Q ss_pred EEEEECCHHHHH----HHHHHHHHHHCCCCEEEEECC
Q ss_conf 999952688999----999999999739943998574
Q gi|254780655|r 561 VTIFSSGSELKI----AVEACEILSSRNISTRVVSVP 593 (673)
Q Consensus 561 v~iia~G~~v~~----al~aa~~L~~~Gi~~~Vi~~~ 593 (673)
-+|+++|+.+.. |-+..+.|+++||++.++-..
T Consensus 4 kIlVACGsGIATSTvva~kv~~~~~e~gi~v~i~Q~~ 40 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCR 40 (94)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf 5999858837599999999999999859806899974
No 337
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=29.94 E-value=32 Score=13.43 Aligned_cols=75 Identities=12% Similarity=0.114 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCEEEECCCCCC
Q ss_conf 68899999999999973994399857465810008688999643679779997286027899984579818983577676
Q gi|254780655|r 567 GSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIEAGLRQGWDAFIGSDGSFIGMQGFGAS 646 (673)
Q Consensus 567 G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE~g~~~g~~~~~~~~~~~igid~Fg~s 646 (673)
||-+--|---.++|++.|+++.|.+.+ .+ ++=.....+||-|+ +..- ++-...+...+.++.|-.+
T Consensus 12 GSSaMgas~lrk~lk~~gl~i~V~n~a----I~--------~lp~dadlVVt~~~-L~~r-Ak~~~p~a~~i~v~nfL~~ 77 (87)
T cd05567 12 GSSAMGASVLRKKLKKAGLEIPVTNSA----ID--------ELPSDADLVVTHAS-LTDR-AKKKAPQAQHLSVDNFLNT 77 (87)
T ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEEE----HH--------HCCCCCCEEEEHHH-HHHH-HHHHCCCCEEEEHHHHCCC
T ss_conf 589999999999999849983699801----65--------49986438886699-9999-9976899889965872588
Q ss_pred CCHHHHHHH
Q ss_conf 888899998
Q gi|254780655|r 647 GSCDLLYQH 655 (673)
Q Consensus 647 g~~~el~~~ 655 (673)
..+++|.++
T Consensus 78 ~~yd~lv~~ 86 (87)
T cd05567 78 PEYDELIER 86 (87)
T ss_pred HHHHHHHHH
T ss_conf 779999972
No 338
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=29.94 E-value=32 Score=13.43 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=21.4
Q ss_pred EEEECCHHHHH----HHHHHHHHHHCCCCEEEEEC
Q ss_conf 99952688999----99999999973994399857
Q gi|254780655|r 562 TIFSSGSELKI----AVEACEILSSRNISTRVVSV 592 (673)
Q Consensus 562 ~iia~G~~v~~----al~aa~~L~~~Gi~~~Vi~~ 592 (673)
+|+++|+.+.. +-+..+.|+++||++.+...
T Consensus 3 IlVaCGsGiaTSt~v~~ki~~~l~e~gi~~~i~~~ 37 (89)
T cd05566 3 ILVACGTGVATSTVVASKVKELLKENGIDVKVEQC 37 (89)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 99998997039999999999999986991599997
No 339
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.94 E-value=32 Score=13.43 Aligned_cols=43 Identities=19% Similarity=0.172 Sum_probs=30.7
Q ss_pred CCCCEEEEECCHHH-HHHHHHHHHHHHCCCCEEEEECCCCCHHCCC
Q ss_conf 99729999526889-9999999999973994399857465810008
Q gi|254780655|r 557 PNAQVTIFSSGSEL-KIAVEACEILSSRNISTRVVSVPCFELFFEQ 601 (673)
Q Consensus 557 ~~~dv~iia~G~~v-~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~ 601 (673)
...+|.++..|... ..|++.++.|++.|+++.|.-.. +.+.+|
T Consensus 334 ~~~~v~v~~~~~~~~~~a~~la~~LR~~g~~~~~~~~~--r~~k~q 377 (429)
T COG0124 334 TRVDVYVVPLGEDAEPEALKLAQKLRAAGISVEVDYSG--RKLKKQ 377 (429)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECC--CCHHHH
T ss_conf 77888999848615999999999999759948998556--568999
No 340
>TIGR00874 talAB transaldolase; InterPro: IPR004730 Transaldolase (2.2.1.2 from EC) catalyzes the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate. This enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways. Transaldolase is an enzyme of about 34 Kd whose sequence has been well conserved throughout evolution. A lysine has been implicated in the catalytic mechanism of the enzyme; it acts as a nucleophilic group that attacks the carbonyl group of fructose-6-phosphate. Transaldolase is evolutionary related to a bacterial protein of about 20 Kd (known as talC in Escherichia coli), whose exact function is not yet known.; GO: 0004801 transaldolase activity, 0006098 pentose-phosphate shunt, 0005737 cytoplasm.
Probab=29.82 E-value=32 Score=13.42 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=16.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHH-CCCCHHHHH
Q ss_conf 4444444406788888887511-022102220
Q gi|254780655|r 224 NTLSVNGHDHHAITSTLRKAQL-SDKPTMIAC 254 (673)
Q Consensus 224 ~~~~vdG~d~~~i~~a~~~ak~-~~kP~~I~~ 254 (673)
.++..|-=|+++|..- .-++ +--|++|..
T Consensus 11 t~vVADtGD~~~i~~~--~pqDaTTNPSLIL~ 40 (324)
T TIGR00874 11 TVVVADTGDIEAIKKY--QPQDATTNPSLILA 40 (324)
T ss_pred CEEEECCCCHHHHHHC--CCCCCCCCHHHHHH
T ss_conf 7788527878999736--89986447389998
No 341
>pfam01918 Alba Alba. Alba is a novel chromosomal protein that coats archaeal DNA without compacting it.
Probab=29.56 E-value=32 Score=13.39 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=24.4
Q ss_pred CCCCCEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf 6997299995268899999999999973
Q gi|254780655|r 556 TPNAQVTIFSSGSELKIAVEACEILSSR 583 (673)
Q Consensus 556 ~~~~dv~iia~G~~v~~al~aa~~L~~~ 583 (673)
.+...|.|.|.|.-+..|+..|++|+++
T Consensus 25 ~~~~~V~i~g~G~aI~kaV~vaei~k~r 52 (67)
T pfam01918 25 GGADEVVLKGLGRAISKAVSVAEILKRR 52 (67)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 9987799995278889899999999998
No 342
>TIGR02065 ECX1 exosome complex exonuclease 1; InterPro: IPR011807 The PH (phosphorolytic) domain is responsible for 3'-5' exoribonuclease activity, although in some proteins this domain has lost its catalytic function. An active PH domain uses inorganic phosphate as a nucleophile, adding it across the phosphodiester bond between the end two nucleotides in order to release ribonucleoside 5'-diphosphate (rNDP) from the 3' end of the RNA substrate. PH domains can be found in bacterial/organelle RNases and PNPases (polynucleotide phosphorylases) , as well as in archaeal and eukaryotic RNA exosomes , , the later acting as nano-compartments for the degradation or processing of RNA (including mRNA, rRNA, snRNA and snoRNA). Bacterial/organelle PNPases share a common barrel structure with RNA exosomes, consisting of a hexameric ring of PH domains that act as a degradation chamber, and an S1-domain/KH-domain containing cap that binds the RNA substrate (and sometimes accessory proteins) in order to regulate and restrict entry into the degradation chamber . Unstructured RNA substrates feed in through the pore made by the S1 domains, are degraded by the PH domain ring, and exit as nucleotides via the PH pore at the opposite end of the barrel , . This entry represents a family of archaeal proteins that are orthologous to the eukaryotic exosome protein Rrp41. It is somewhat more distantly related to the bacterial protein ribonuclease PH. An exosome-like complex has been demonstrated experimentally for the Archaea in Sulfolobus solfataricus, so members of this family are designated exosome complex exonuclease 1, after usage in SwissProt .; GO: 0016896 exoribonuclease activity producing 5'-phosphomonoesters, 0000178 exosome (RNase complex).
Probab=29.44 E-value=28 Score=13.81 Aligned_cols=13 Identities=15% Similarity=0.087 Sum_probs=7.6
Q ss_pred CCCCHHHCCCCCC
Q ss_conf 4320010032576
Q gi|254780655|r 407 KSDFSGRYLHYGV 419 (673)
Q Consensus 407 ~~~~p~r~i~~GI 419 (673)
-+.||--.|||-|
T Consensus 108 ~E~fPRt~IDVF~ 120 (231)
T TIGR02065 108 LEQFPRTAIDVFV 120 (231)
T ss_pred EECCCCCCCEEEE
T ss_conf 2238895010578
No 343
>PRK08163 salicylate hydroxylase; Provisional
Probab=29.20 E-value=33 Score=13.34 Aligned_cols=16 Identities=19% Similarity=0.146 Sum_probs=7.3
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 2688999999999999
Q gi|254780655|r 566 SGSELKIAVEACEILS 581 (673)
Q Consensus 566 ~G~~v~~al~aa~~L~ 581 (673)
.|.....|++=|-.|.
T Consensus 302 ~GQGan~aieDA~~La 317 (396)
T PRK08163 302 MAQGACMALEDAVTLG 317 (396)
T ss_pred CCCCHHHHHHHHHHHH
T ss_conf 3661878999999999
No 344
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=29.15 E-value=33 Score=13.34 Aligned_cols=14 Identities=7% Similarity=-0.021 Sum_probs=7.5
Q ss_pred HHHHCCCCEEEEEC
Q ss_conf 99973994399857
Q gi|254780655|r 579 ILSSRNISTRVVSV 592 (673)
Q Consensus 579 ~L~~~Gi~~~Vi~~ 592 (673)
+++++|+++.|...
T Consensus 364 ~a~~~g~~~~~~~~ 377 (464)
T PRK05976 364 EAKEAGYDVKVGKF 377 (464)
T ss_pred HHHHCCCCEEEEEE
T ss_conf 99876998899999
No 345
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=28.70 E-value=33 Score=13.28 Aligned_cols=15 Identities=20% Similarity=0.364 Sum_probs=8.1
Q ss_pred HHHHCCCCEEEEECC
Q ss_conf 999739943998574
Q gi|254780655|r 579 ILSSRNISTRVVSVP 593 (673)
Q Consensus 579 ~L~~~Gi~~~Vi~~~ 593 (673)
+++++|+++++...+
T Consensus 362 ea~~~g~~~~~~~~~ 376 (462)
T PRK06416 362 KAKEEGFDVKVVRFP 376 (462)
T ss_pred HHHHCCCCEEEEEEE
T ss_conf 999759977999998
No 346
>pfam12500 DUF3706 Protein of unknown function (DUF3706). This domain family is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=28.61 E-value=34 Score=13.27 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=30.0
Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHH
Q ss_conf 997299995268899999999999973994399857465810
Q gi|254780655|r 557 PNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELF 598 (673)
Q Consensus 557 ~~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~l 598 (673)
.+..+.++++|-.+..-+..|+.|++.|.+++.-+ .+-.|.
T Consensus 99 ~g~~vLvlGt~E~my~P~~lA~~l~~~g~~v~~~s-TTRSPi 139 (199)
T pfam12500 99 KGERVLVLGTGEFMYLPFLLAERLEQAGADVRYQS-TTRSPI 139 (199)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEC-CCCCCE
T ss_conf 99858998051187899999999975695489960-577870
No 347
>PRK13529 malate dehydrogenase; Provisional
Probab=28.46 E-value=34 Score=13.26 Aligned_cols=78 Identities=12% Similarity=0.101 Sum_probs=33.5
Q ss_pred CCCCEEEECCHHHHHHHH-HHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEE--EECCHHH--
Q ss_conf 122112112012457777-65202567834999524444334566553221234737998569972999--9526889--
Q gi|254780655|r 496 PDLLVLRPADSIETLECW-QVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTPNAQVTI--FSSGSEL-- 570 (673)
Q Consensus 496 Pnl~v~~P~d~~E~~~~~-~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~~~dv~i--ia~G~~v-- 570 (673)
+.-.||.=||+....++. ..|++..+|-. |.-+-++.|.+ .+ .|+.....+.+.-.+. |+.|.++
T Consensus 409 erPIIF~LSNPT~~aE~tpeda~~wT~Gra-i~AtGSPF~pv--~~-------~G~~~~p~Q~NN~yiFPGiglGa~~~~ 478 (563)
T PRK13529 409 ERPIIFPLSNPTSRAEATPEDIIAWTDGRA-LVATGSPFAPV--EY-------NGKTYPIGQCNNAYIFPGIGLGVIASG 478 (563)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHCCCCE-EEEECCCCCCC--CC-------CCEEECCCCCCEEEECCHHHHHHHHCC
T ss_conf 998898678984325589899974116978-99968988871--20-------881655666632466535788999818
Q ss_pred ------HHHHHHHHHHHHC
Q ss_conf ------9999999999973
Q gi|254780655|r 571 ------KIAVEACEILSSR 583 (673)
Q Consensus 571 ------~~al~aa~~L~~~ 583 (673)
...+.||+.|++.
T Consensus 479 a~~Itd~M~~aAA~aLA~~ 497 (563)
T PRK13529 479 ARRVTDEMLMAAAHALAEC 497 (563)
T ss_pred CCCCCHHHHHHHHHHHHHC
T ss_conf 8578899999999999853
No 348
>PRK07308 flavodoxin; Validated
Probab=28.45 E-value=34 Score=13.26 Aligned_cols=17 Identities=12% Similarity=0.051 Sum_probs=6.2
Q ss_pred HHHHHHCCCCEEEEECC
Q ss_conf 99999739943998574
Q gi|254780655|r 577 CEILSSRNISTRVVSVP 593 (673)
Q Consensus 577 a~~L~~~Gi~~~Vi~~~ 593 (673)
++.|++.|++++|.++.
T Consensus 23 ~~~l~~~G~~v~v~~~~ 39 (147)
T PRK07308 23 ADKLQELGHDVDVDECT 39 (147)
T ss_pred HHHHHHCCCCEEEECCC
T ss_conf 99999759940761136
No 349
>pfam04273 DUF442 Putative phosphatase (DUF442). Although this domain is uncharacterized it seems likely that it performs a phosphatase function.
Probab=28.12 E-value=34 Score=13.22 Aligned_cols=45 Identities=20% Similarity=0.260 Sum_probs=20.5
Q ss_pred CHHHHHHHCCCCCCC--CCCCC-HHHHHHHHHHH-HHCCCCHHHHHCCC
Q ss_conf 179988641444444--44440-67888888875-11022102220133
Q gi|254780655|r 213 DQYARFRASGWNTLS--VNGHD-HHAITSTLRKA-QLSDKPTMIACETV 257 (673)
Q Consensus 213 ~~~~~~~a~Gw~~~~--vdG~d-~~~i~~a~~~a-k~~~kP~~I~~~T~ 257 (673)
.+.+..++.|..++. |++.+ -.+....+.++ ....+|++++|+|-
T Consensus 48 ~~~~~a~~~Gl~y~~iPv~~~~~t~~~v~~f~~~l~~~~~Pvl~~CrSG 96 (110)
T pfam04273 48 AEQAAARAAGLAYRFIPVISGQITEADVEAFQRALAAAEGPVLAHCRSG 96 (110)
T ss_pred HHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 9999999839979996447789899999999999985899899988998
No 350
>pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase.
Probab=27.75 E-value=35 Score=13.17 Aligned_cols=14 Identities=0% Similarity=-0.192 Sum_probs=6.3
Q ss_pred CCCCEEEEEECCCC
Q ss_conf 67845999843621
Q gi|254780655|r 157 LIDHYTYVLVGDGC 170 (673)
Q Consensus 157 ~~d~~v~~iiGDG~ 170 (673)
-++.+|.-+--+.+
T Consensus 104 rf~t~V~~V~~~~d 117 (532)
T pfam00743 104 QFKTTVCSVTKRPD 117 (532)
T ss_pred ECCCEEEEEEECCC
T ss_conf 65778999997667
No 351
>PRK11574 hypothetical protein; Provisional
Probab=27.52 E-value=35 Score=13.14 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=5.9
Q ss_pred HHHHHHHHCCCCHHHHH
Q ss_conf 88887511022102220
Q gi|254780655|r 238 STLRKAQLSDKPTMIAC 254 (673)
Q Consensus 238 ~a~~~ak~~~kP~~I~~ 254 (673)
+.+++..+.+|+..=+|
T Consensus 90 ~~lk~~~~~gK~iAAIC 106 (196)
T PRK11574 90 ETVKQFHRSGRIVAAIC 106 (196)
T ss_pred HHHHHHHHCCCEEEEEC
T ss_conf 99999998799199982
No 352
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family; InterPro: IPR011875 This entry describes Corynebacterium glutamicum GlgA and closely related proteins in other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related IPR011835 from INTERPRO, family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor ..
Probab=27.39 E-value=35 Score=13.13 Aligned_cols=38 Identities=29% Similarity=0.357 Sum_probs=21.2
Q ss_pred CCEEEE-CCHHHHHHHHHHHHCCCCCCEEE---EECCCCC-CCC
Q ss_conf 211211-20124577776520256783499---9524444-334
Q gi|254780655|r 498 LLVLRP-ADSIETLECWQVALKEKNRPSVL---SLSRQNL-PFL 536 (673)
Q Consensus 498 l~v~~P-~d~~E~~~~~~~al~~~~gP~~i---r~~R~~~-p~~ 536 (673)
+.-|+| +|..-....=++.++. +.|.++ |.+||+. |++
T Consensus 197 ~~~y~~~~~~~~~~v~~~~Gid~-~rP~~lFVGRItRQKGv~~L 239 (416)
T TIGR02149 197 TKEYKPAADDDGNKVLDRYGIDR-SRPYVLFVGRITRQKGVPHL 239 (416)
T ss_pred HHHHCCCCCCCHHHHHHHHCCCC-CCCEEEEEEEEECCCCHHHH
T ss_conf 57606888874113466326799-88878985202031655899
No 353
>TIGR00580 mfd transcription-repair coupling factor; InterPro: IPR004576 All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transcribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognised by TcrF, which releases RNAP and the truncated transcript. The TcrF may replace RNAP at the lesion site and then recruit the UvrA/B/C repair system.; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=27.07 E-value=36 Score=13.09 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=32.2
Q ss_pred HCCCCCHHHHHCC-----CCEEEECCHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 0022210111012-----211211201245777765202567834999524
Q gi|254780655|r 485 PVEHLAALRAIPD-----LLVLRPADSIETLECWQVALKEKNRPSVLSLSR 530 (673)
Q Consensus 485 ~iedia~lr~iPn-----l~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R 530 (673)
|+-|||.+..=|- -+.+.|-|+.-++.|++.=+. .+|-+|..++|
T Consensus 681 g~RdlS~I~TPP~~R~pv~T~v~~~~~~~~~~AI~rEL~-RgGQvFyv~Nr 730 (997)
T TIGR00580 681 GIRDLSIIATPPEDRLPVRTFVMEYDDELVREAIRRELL-RGGQVFYVHNR 730 (997)
T ss_pred HHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHC-CCCEEEEEECC
T ss_conf 553322105788877424887742786899999997531-39818998088
No 354
>pfam01565 FAD_binding_4 FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyses the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidizes the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan.
Probab=27.01 E-value=36 Score=13.08 Aligned_cols=82 Identities=17% Similarity=0.151 Sum_probs=43.4
Q ss_pred CEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC---CCEEEEECCCCCEEEEECCHHHHHHHH
Q ss_conf 11211201245777765202567834999524444334566553221234---737998569972999952688999999
Q gi|254780655|r 499 LVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCAL---GAYDYISTPNAQVTIFSSGSELKIAVE 575 (673)
Q Consensus 499 ~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~---G~~~~~~~~~~dv~iia~G~~v~~al~ 575 (673)
.|+.|.+.+|+..++++|-++ +-|+.+|-...+.-... ....-.+.. -+..... .....+.+..|....+..
T Consensus 3 ~vv~P~s~~ev~~~v~~a~~~-~~~v~~~g~G~~~~~~~--~~~gi~i~l~~~~~i~~~d-~~~~~v~v~aG~~~~~l~- 77 (138)
T pfam01565 3 AVVRPESEEEVAAIVRLANEH-GLPVLVRGGGSSLLGDA--VTGGVVLDLSRLNGILEID-PENGTATVEAGVTLGDLV- 77 (138)
T ss_pred EEEECCCHHHHHHHHHHHHHC-CCCEEEECCCEECCCCC--CCCEEEEECCCCCCCEEEE-CCCCEEEEECCCCHHHHH-
T ss_conf 999909999999999999986-99689988966727986--3995999956899726885-388489995780999999-
Q ss_pred HHHHHHHCCCCE
Q ss_conf 999999739943
Q gi|254780655|r 576 ACEILSSRNIST 587 (673)
Q Consensus 576 aa~~L~~~Gi~~ 587 (673)
+.|.++|...
T Consensus 78 --~~l~~~g~~~ 87 (138)
T pfam01565 78 --RALAAKGLLL 87 (138)
T ss_pred --HHHHHCCCEE
T ss_conf --9999729988
No 355
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=26.14 E-value=37 Score=12.97 Aligned_cols=28 Identities=14% Similarity=0.018 Sum_probs=12.1
Q ss_pred HHHHHHHCCCCCCCCC-----CCCHHHHHHHHH
Q ss_conf 7998864144444444-----440678888888
Q gi|254780655|r 214 QYARFRASGWNTLSVN-----GHDHHAITSTLR 241 (673)
Q Consensus 214 ~~~~~~a~Gw~~~~vd-----G~d~~~i~~a~~ 241 (673)
..+..+.+|.++..+. .-|.+++.++++
T Consensus 89 ~~~~a~~~g~~~~~i~~~~~~~~~~~~v~~~l~ 121 (356)
T cd06451 89 WADMAERYGADVDVVEKPWGEAVSPEEIAEALE 121 (356)
T ss_pred HHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 676441159723998689999789899998863
No 356
>TIGR00464 gltX_bact glutamyl-tRNA synthetase; InterPro: IPR004527 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of E. coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure . ; GO: 0000166 nucleotide binding, 0004818 glutamate-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006424 glutamyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=26.01 E-value=37 Score=12.96 Aligned_cols=77 Identities=18% Similarity=0.349 Sum_probs=39.5
Q ss_pred CCC--CEEEEEECCCCCCCCCCCC---CCCC-CHHHHHHHCCCC-CCC------CCCCCHHH-------HHHHHHHHHHC
Q ss_conf 223--3069996276322322355---6782-179988641444-444------44440678-------88888875110
Q gi|254780655|r 187 GLS--KLIVLWDNNGISIDGPISL---ADST-DQYARFRASGWN-TLS------VNGHDHHA-------ITSTLRKAQLS 246 (673)
Q Consensus 187 ~l~--nli~i~d~N~~si~~~~~~---~~~~-~~~~~~~a~Gw~-~~~------vdG~d~~~-------i~~a~~~ak~~ 246 (673)
|++ |+.|+|||=.|.|.--+.+ ..++ -....++|+||. +.. |-|.+-+. +..++++-|..
T Consensus 204 G~PTYNfAvvvDD~lM~IThViRGedHisNTPkQI~iy~Alg~~~iP~f~H~p~I~~~~gKKLSKRdg~~~~si~q~~~~ 283 (513)
T TIGR00464 204 GSPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYKALGWKRIPTFAHLPLILNEDGKKLSKRDGKTATSIEQFKEQ 283 (513)
T ss_pred CCCCCCEEEEEECCCCCCCEEEECCHHHCCCHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEECCCCHHHHHHHHHHHC
T ss_conf 88642506788533255451441202006718999999970889888155353585698840012064025768999866
Q ss_pred C-CCHHH-HHCCCCCCCCC
Q ss_conf 2-21022-20133455570
Q gi|254780655|r 247 D-KPTMI-ACETVIGFGSP 263 (673)
Q Consensus 247 ~-kP~~I-~~~T~kG~G~~ 263 (673)
+ =|-.| -.-+..||..+
T Consensus 284 GyLPEAl~Nyl~lLGW~~~ 302 (513)
T TIGR00464 284 GYLPEALINYLALLGWSPP 302 (513)
T ss_pred CCCHHHHHHHHHHHCCCCC
T ss_conf 8877899999998468965
No 357
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=25.98 E-value=34 Score=13.27 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=22.3
Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 98864144444444440678888888
Q gi|254780655|r 216 ARFRASGWNTLSVNGHDHHAITSTLR 241 (673)
Q Consensus 216 ~~~~a~Gw~~~~vdG~d~~~i~~a~~ 241 (673)
.-|+.+||+|.-||++|.+++.++++
T Consensus 120 ~tl~~~Gi~v~fvd~~d~~~~~~aI~ 145 (426)
T COG2873 120 HTLKRLGIEVRFVDPDDPENFEAAID 145 (426)
T ss_pred HHHHHCCCEEEEECCCCHHHHHHHHC
T ss_conf 88886481799927999899998738
No 358
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=25.96 E-value=37 Score=12.95 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=15.1
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 972999952688999999999999739943998574
Q gi|254780655|r 558 NAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVP 593 (673)
Q Consensus 558 ~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~ 593 (673)
.++++-++.- -++++++|+++++...+
T Consensus 355 ~PeiA~VGlt---------e~ea~~~~~~~~~~~~~ 381 (467)
T PRK07845 355 RPEIATVGVS---------QAAIDSGEVPARTVMLP 381 (467)
T ss_pred CCCEEEEECC---------HHHHHHCCCCEEEEEEE
T ss_conf 7433400388---------99998779976999997
No 359
>TIGR00075 hypD hydrogenase expression/formation protein HypD; InterPro: IPR002780 HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes . This protein has been found in Gram-negative and Gram-positive bacteria and Archaea. HypD contains many possible metal binding residues, which may bind to nickel. Transposon Tn5 insertions into HypD resulted in Rhizobium leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas .; GO: 0046872 metal ion binding.
Probab=25.74 E-value=38 Score=12.92 Aligned_cols=40 Identities=13% Similarity=-0.001 Sum_probs=29.7
Q ss_pred EEEEEECCC-CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 599984362-114344557887652202233069996276322
Q gi|254780655|r 161 YTYVLVGDG-CLMEGISQEAISFAGHLGLSKLIVLWDNNGISI 202 (673)
Q Consensus 161 ~v~~iiGDG-~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si 202 (673)
|=++++|=| |.|-.++-=.|..+-..+.+|+-++. |++.+
T Consensus 145 r~VVf~aiGFETTaP~TA~~L~~~k~~~v~NF~~l~--~H~~~ 185 (384)
T TIGR00075 145 RKVVFFAIGFETTAPTTAITLLSAKAEDVNNFYVLS--AHRLV 185 (384)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEE--CCCCH
T ss_conf 947999615512614699999735557765034432--11221
No 360
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=25.57 E-value=38 Score=12.90 Aligned_cols=72 Identities=18% Similarity=0.203 Sum_probs=47.5
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 45999843621143445578876522022330699962763223223556782179988641444444444406788888
Q gi|254780655|r 160 HYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTLSVNGHDHHAITST 239 (673)
Q Consensus 160 ~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~Gw~~~~vdG~d~~~i~~a 239 (673)
..|++--.||----|++|-|-.+ ++.-.|++-. + .+..-....+++|=+|+.++++--+++..|
T Consensus 113 ~~t~vtATdGNHG~~VA~aA~~l----G~ka~I~mp~-~-----------~~~~k~~air~~GAeVv~~~~~YDdav~~A 176 (396)
T TIGR03528 113 DITFVTATDGNHGRGVAWAANQL----GQKSVVYMPK-G-----------SAQIRLENIRAEGAECTITDLNYDDAVRLA 176 (396)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC----CCCEEEEECC-C-----------CCHHHHHHHHHCCCEEEEECCCHHHHHHHH
T ss_conf 80899807871899999999985----9988999179-9-----------999999999975998999789779999999
Q ss_pred HHHHHHCC
Q ss_conf 88751102
Q gi|254780655|r 240 LRKAQLSD 247 (673)
Q Consensus 240 ~~~ak~~~ 247 (673)
.+.|++.+
T Consensus 177 ~~~A~e~g 184 (396)
T TIGR03528 177 WKMAQENG 184 (396)
T ss_pred HHHHHHCC
T ss_conf 99998659
No 361
>TIGR00065 ftsZ cell division protein FtsZ; InterPro: IPR000158 In bacteria, FtsZ , , is an essential cell division protein which appears to be involved in the initiation of this event. It assembles into a cytokinetic ring on the inner surface of the cytoplasmic membrane at the place where division will occur. The ring serves as a scaffold that is disassembled when septation is completed. FtsZ ring formation is initiated at a single site on one side of the bacterium and appears to grow bidirectionally. In Escherichia coli, MinCD IPR005526 from INTERPRO, encoded by the MinB locus, form a complex which appears to block the formation of FtsZ rings at the cell poles, at the ancient mid cell division sites, whilst MinE, encoded at the same locus, specifically prevents the action of MinCD at mid cell. FtsZ is a GTP binding protein PDOC00199 from PROSITEDOC with a GTPase activity. It undergoes GTP-dependent polymerization into filaments (or tubules) that seem to form a cytoskeleton involved in septum synthesis. The structure and the properties of FtsZ clearly provide it with the capacity for the cytoskeletal, perhaps motor role, necessary for "contraction" along the division plane. In addition, however, the FtsZ ring structure provides the framework for the recruitment or assembly of the ten or so membrane and cytoplasmic proteins, uniquely required for cell division in E. coli or Bacillus subtilis, some of which are required for biogenesis of the new hemispherical poles of the two daughter cells. FtsZ can polymerize into various structures, for example a single linear polymer of FtsZ monomers, called a protofilament. Protofilaments can associate laterally to form pairs (sometimes called thick filaments, bundles (ill-defined linear associations of multiple protofilaments or thick filaments, sheets (parallel or anti-parallel two-dimensional associations of thick filaments and tubes (anti-parallel associations of thick filaments in a circular fashion to form a tubular structure). In addition, small circles of FtsZ monomers (a short protofilament bent around to join itself, apparently head to tail) have been observed and termed mini-rings. FtsZ is a protein of about 400 residues which is well conserved across bacterial species and which is also present in the chloroplast of plants as well as in archaebacteria . FtsZ shows structural similarity with eukaryotic tubulins. This similarity is probably both evolutionary and functionally significant.; GO: 0005525 GTP binding, 0005737 cytoplasm.
Probab=25.51 E-value=38 Score=12.89 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=8.1
Q ss_pred CCHHHHHCCCCCCCC
Q ss_conf 210222013345557
Q gi|254780655|r 248 KPTMIACETVIGFGS 262 (673)
Q Consensus 248 kP~~I~~~T~kG~G~ 262 (673)
+=.+|=.++.+|-|.
T Consensus 68 ~kilIG~~~TrGLGA 82 (365)
T TIGR00065 68 KKILIGKKLTRGLGA 82 (365)
T ss_pred CEEEECCCCCCCCCC
T ss_conf 135615733556767
No 362
>PRK05693 short chain dehydrogenase; Provisional
Probab=25.49 E-value=38 Score=12.89 Aligned_cols=29 Identities=7% Similarity=0.139 Sum_probs=12.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHH-CCCCHHHH
Q ss_conf 444444406788888887511-02210222
Q gi|254780655|r 225 TLSVNGHDHHAITSTLRKAQL-SDKPTMIA 253 (673)
Q Consensus 225 ~~~vdG~d~~~i~~a~~~ak~-~~kP~~I~ 253 (673)
.+.+|=.|.+++.++.++... .++.-+++
T Consensus 48 ~~~~Dvtd~~~i~~~~~~~~~~~g~iDiLV 77 (274)
T PRK05693 48 AVQLDVNDGAALARLAEELEAEHQGLDVLI 77 (274)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 899846998999999999999729976899
No 363
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=25.32 E-value=38 Score=12.87 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=15.5
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 972999952688999999999999739943998574
Q gi|254780655|r 558 NAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVP 593 (673)
Q Consensus 558 ~~dv~iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~ 593 (673)
.++++-++.- .++++++|++..+...+
T Consensus 354 ~PeiA~VGlt---------e~ea~~~g~~~~~~~~~ 380 (466)
T PRK06115 354 RPEVASVGKT---------EEQLKAEGRAYKVGKFP 380 (466)
T ss_pred CCCEEEEECC---------HHHHHHCCCCEEEEEEE
T ss_conf 6867988898---------99998769988999998
No 364
>PRK03719 ecotin precursor; Provisional
Probab=25.27 E-value=38 Score=12.92 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=21.3
Q ss_pred EEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 99962763223223556782179988641444444444
Q gi|254780655|r 193 VLWDNNGISIDGPISLADSTDQYARFRASGWNTLSVNG 230 (673)
Q Consensus 193 ~i~d~N~~si~~~~~~~~~~~~~~~~~a~Gw~~~~vdG 230 (673)
+.+|||...+.|..+.. .++++|+++..+++
T Consensus 72 ~~vDCN~~~l~G~Le~~-------tl~GWGY~YY~v~~ 102 (167)
T PRK03719 72 LEVDCNQHRLGGELEEK-------TLEGWGYDYYVVDK 102 (167)
T ss_pred EEEECCCCCCCCCCEEE-------ECCCCCCEEEEECC
T ss_conf 99963673116721470-------00467712599715
No 365
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=25.20 E-value=38 Score=12.86 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=23.4
Q ss_pred HHHHHHHHHCCCEEECCCCCCCCCCCCCHHH
Q ss_conf 2454111100001302454333333331010
Q gi|254780655|r 454 AIRLASLMGIRVIHVLTHDSIGLGEDGPTHQ 484 (673)
Q Consensus 454 ~ir~~al~~~~v~~v~th~gi~~G~DGpTHq 484 (673)
+-|..|+|+-.++|-++ +++.++++|-.||
T Consensus 89 ~rrV~aiQ~g~~If~~~-ASF~~~e~g~eHq 118 (289)
T COG1946 89 TRRVDAIQHGKLIFSAT-ASFQVPEEGFEHQ 118 (289)
T ss_pred EEEEEEEECCEEEEEEE-EECCCCCCCCHHH
T ss_conf 67999998999999987-0006799982154
No 366
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=24.95 E-value=39 Score=12.82 Aligned_cols=66 Identities=12% Similarity=0.052 Sum_probs=36.5
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC---CCCCCCCC---CCHHHHHHHCCCCCCCC
Q ss_conf 5999843621143445578876522022330699962763223---22355678---21799886414444444
Q gi|254780655|r 161 YTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISID---GPISLADS---TDQYARFRASGWNTLSV 228 (673)
Q Consensus 161 ~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~---~~~~~~~~---~~~~~~~~a~Gw~~~~v 228 (673)
++-++||=+|-. .+.-+..+|++|+++-+-+-..+..++-- ...-...+ .-+...++.|+|..+.+
T Consensus 66 ~~~afiGP~~p~--~c~~~a~la~~wn~Pl~s~~c~~~~~~~k~~ypt~~rt~p~~~~vl~~il~~F~W~~vai 137 (382)
T cd06371 66 YASAFVGPVNPG--YCEAAALLAKEWDKALFSWGCVNYELDDVRSYPTFARTLPSPSRVLFTVLRYFRWAHVAI 137 (382)
T ss_pred CCCEEECCCCCC--HHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 771798899952--213999998655985225656762335544565756677766999999998769808999
No 367
>TIGR01835 HMG-CoA-S_prok hydroxymethylglutaryl-CoA synthase; InterPro: IPR011554 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase. Hydroxymethylglutaryl-CoA synthase (2.3.3.10 from EC) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA . HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria . In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi . In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes , . This entry represents HMG-CoA synthase enzymes found in a limited spectrum of mostly Gram-positive bacteria, which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway..
Probab=24.81 E-value=39 Score=12.81 Aligned_cols=74 Identities=19% Similarity=0.241 Sum_probs=48.8
Q ss_pred C-CEEEEEECC---------CCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC
Q ss_conf 8-459998436---------211434455788765220223306999627632232235567821799886414444444
Q gi|254780655|r 159 D-HYTYVLVGD---------GCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTLSV 228 (673)
Q Consensus 159 d-~~v~~iiGD---------G~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~Gw~~~~v 228 (673)
| .||.||-.| ||-|.|-.-=||..... ++|.-|..+|. +.+++|+...||=.+-.+-.|
T Consensus 143 ~s~kVLViaSDiAkY~~~t~GE~TQGAGAVA~Li~~d---P~~l~i~~~~~--------G~~T~DimDFWRP~y~~~a~V 211 (412)
T TIGR01835 143 NSRKVLVIASDIAKYGLETPGEATQGAGAVAMLISAD---PKLLAINEDSV--------GLYTDDIMDFWRPNYSTTALV 211 (412)
T ss_pred CCCEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHCC---CHHHHCCCCCC--------CEECCCCCCCCCCCCCCCCEE
T ss_conf 8660168886311227798988616689999987418---01200158765--------312133121217898855316
Q ss_pred CCC-CHHHHHHHHHHH
Q ss_conf 444-067888888875
Q gi|254780655|r 229 NGH-DHHAITSTLRKA 243 (673)
Q Consensus 229 dG~-d~~~i~~a~~~a 243 (673)
||. -.+.-.+|+++|
T Consensus 212 dG~~S~~~Yl~a~~~a 227 (412)
T TIGR01835 212 DGQYSTEQYLNALEEA 227 (412)
T ss_pred CCCHHHHHHHHHHHHH
T ss_conf 4604688999999999
No 368
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=24.77 E-value=39 Score=12.80 Aligned_cols=92 Identities=18% Similarity=0.291 Sum_probs=47.2
Q ss_pred HHCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEE----EECCHH
Q ss_conf 1012211211201245777765202567834999524444334566553221234737998569972999----952688
Q gi|254780655|r 494 AIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTPNAQVTI----FSSGSE 569 (673)
Q Consensus 494 ~iPnl~v~~P~d~~E~~~~~~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~~~dv~i----ia~G~~ 569 (673)
.++|+.|+.| |..-++.+-..|-.-.+.|.++..-|...+.. .......| .+ +|.+++| |.+|.
T Consensus 177 ~~~~~vVVsP-D~G~~krA~~~A~~L~~~~~a~~~K~R~~~~~-----~~~~~~vG--dV---~Gr~~IIVDDiIdTGg- 244 (331)
T PRK02812 177 NLEDIVVVSP-DVGGVARARAFAKKLNDAPLAIIDKRRQAHNV-----AEVLNVIG--DV---KGKTAILVDDMIDTGG- 244 (331)
T ss_pred CCCCCEEECC-CCCHHHHHHHHHHHCCCCCEEEEECCCCCCCC-----CEECCCCC--CC---CCCEEEEECCHHHHHH-
T ss_conf 8887179747-94089999999997279958999424578884-----21024445--54---5651899621442279-
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCHHCC
Q ss_conf 9999999999997399439985746581000
Q gi|254780655|r 570 LKIAVEACEILSSRNISTRVVSVPCFELFFE 600 (673)
Q Consensus 570 v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~ 600 (673)
...+|++.|+++|-. +|+-+.+--.|-.
T Consensus 245 --Tl~~aa~~Lk~~GA~-~V~a~aTHgvfsg 272 (331)
T PRK02812 245 --TICEGARLLRKEGAK-RVYACATHAVFSP 272 (331)
T ss_pred --HHHHHHHHHHHCCCC-EEEEEEECCCCCH
T ss_conf --999999999857998-7899998965587
No 369
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=24.74 E-value=39 Score=12.80 Aligned_cols=14 Identities=7% Similarity=0.126 Sum_probs=8.2
Q ss_pred HHHHCCCCEEEEEC
Q ss_conf 99973994399857
Q gi|254780655|r 579 ILSSRNISTRVVSV 592 (673)
Q Consensus 579 ~L~~~Gi~~~Vi~~ 592 (673)
+++++|+++.+...
T Consensus 375 ~a~~~g~~~~~~~~ 388 (475)
T PRK06327 375 QLKAEGVEYKAGKF 388 (475)
T ss_pred HHHHCCCCEEEEEE
T ss_conf 99876998899999
No 370
>PRK07804 L-aspartate oxidase; Provisional
Probab=24.69 E-value=39 Score=12.79 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=8.0
Q ss_pred CEEEEEECCCCCCCHH
Q ss_conf 4599984362114344
Q gi|254780655|r 160 HYTYVLVGDGCLMEGI 175 (673)
Q Consensus 160 ~~v~~iiGDG~l~eG~ 175 (673)
+.+.-++-||..-.|.
T Consensus 163 ~~~~~ll~d~~~v~gv 178 (533)
T PRK07804 163 HVALDLLHDGRAVTGV 178 (533)
T ss_pred EEEEEEEECCCEEEEE
T ss_conf 6999998069989999
No 371
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=24.66 E-value=39 Score=12.79 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 8999999999999739943998574
Q gi|254780655|r 569 ELKIAVEACEILSSRNISTRVVSVP 593 (673)
Q Consensus 569 ~v~~al~aa~~L~~~Gi~~~Vi~~~ 593 (673)
...++++++..++..|+.+-|||.=
T Consensus 197 ~~~e~~~~a~~~~~~g~~~lvid~e 221 (261)
T COG1240 197 PKAETLEAASKLRLRGIQLLVIDTE 221 (261)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 5779999999985268847999557
No 372
>TIGR01326 OAH_OAS_sulfhy O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase; InterPro: IPR006235 This family of sequences is a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine sulfhydrylase (OAH, 2.5.1.49 from EC) and O-acetylserine sulfhydrylase (OAS, 2.5.1.47 from EC). An alternate name for OAH sulfhydrylase is homocysteine synthase.; GO: 0016765 transferase activity transferring alkyl or aryl (other than methyl) groups, 0006520 amino acid metabolic process.
Probab=24.31 E-value=35 Score=13.19 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=22.7
Q ss_pred HHHHHCCCCCCCCCCCC-HHHHHHHHH
Q ss_conf 98864144444444440-678888888
Q gi|254780655|r 216 ARFRASGWNTLSVNGHD-HHAITSTLR 241 (673)
Q Consensus 216 ~~~~a~Gw~~~~vdG~d-~~~i~~a~~ 241 (673)
--|+-+|.+|.-||++| ++++.++++
T Consensus 115 ~TlkrlGIevrFvd~dd~pe~~~k~id 141 (434)
T TIGR01326 115 HTLKRLGIEVRFVDGDDDPEELEKAID 141 (434)
T ss_pred HHHHHCCEEEEEECCCCCHHHHHHHCC
T ss_conf 955544814887278888789997606
No 373
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=24.23 E-value=40 Score=12.73 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=25.9
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 9998436211434455788765220223306999627632
Q gi|254780655|r 162 TYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGIS 201 (673)
Q Consensus 162 v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~s 201 (673)
+.+|=.+-...++++-|-+.++...++.++|+.+ |+|=
T Consensus 111 iLvVdA~eG~~~~QT~eH~~l~~~lgv~~iIV~v--NKmD 148 (203)
T cd01888 111 LLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQ--NKID 148 (203)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEE--ECCC
T ss_conf 8986436677507799999999984998636775--0777
No 374
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=24.18 E-value=36 Score=13.03 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf 78888888751102210222013
Q gi|254780655|r 234 HAITSTLRKAQLSDKPTMIACET 256 (673)
Q Consensus 234 ~~i~~a~~~ak~~~kP~~I~~~T 256 (673)
....+++.+|+.++||.+++.+.
T Consensus 10 ~t~eegL~~ak~s~KPlMvIiH~ 32 (130)
T cd02960 10 QTYEEGLYKAKKSNKPLMVIHHL 32 (130)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 66999999999729997999860
No 375
>TIGR02886 spore_II_AA anti-sigma F factor antagonist; InterPro: IPR014237 This represents the anti-sigma F factor antagonist, also known as stage II sporulation protein AA. This protein is universally conserved in the endospore-forming bacteria, all of which belong to the Firmcutes.; GO: 0045152 antisigma factor binding, 0006355 regulation of transcription DNA-dependent, 0030435 sporulation.
Probab=24.10 E-value=40 Score=12.71 Aligned_cols=70 Identities=20% Similarity=0.212 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 01245777765202567834999524444334566553221234737998569972999952688999999999
Q gi|254780655|r 505 DSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACE 578 (673)
Q Consensus 505 d~~E~~~~~~~al~~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~~~dv~iia~G~~v~~al~aa~ 578 (673)
.+++++..+..+++.. ...-|.+.=+++... +...-.+.+|.|.-+.+.|..+++++.-+.|..+++-.-
T Consensus 22 ~aE~~R~~i~~~i~~~-~~~~~ilnL~~vtFM---DSSGlGVilGRYK~i~~~gG~v~v~~v~p~vkr~felSG 91 (106)
T TIGR02886 22 TAEEVRRKIDDAIERR-PIKHLILNLKNVTFM---DSSGLGVILGRYKKIKQEGGEVIVCNVSPAVKRVFELSG 91 (106)
T ss_pred HHHHHHHHHHHHHHHC-CCCEEEEECCCCCEE---EECCCCEEEEEEEEEEECCCEEEEECCCCCCEEEEECCC
T ss_conf 7899999999898507-983689862776478---651221011103577306888989729931100011148
No 376
>PRK10060 RNase II stability modulator; Provisional
Probab=24.09 E-value=40 Score=12.71 Aligned_cols=90 Identities=19% Similarity=0.194 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHCCCCEEE-EECCCCCHHCCCCHHHHHHHCC-----CCCEEEEECCC-C---HHH---HHHHHCCCCC
Q ss_conf 99999999999973994399-8574658100086889996436-----79779997286-0---278---9998457981
Q gi|254780655|r 570 LKIAVEACEILSSRNISTRV-VSVPCFELFFEQSDSYRAQIIG-----SSPIKIAIEAG-L---RQG---WDAFIGSDGS 636 (673)
Q Consensus 570 v~~al~aa~~L~~~Gi~~~V-i~~~s~k~ld~~~~~~~~~il~-----~~~~~vtiE~g-~---~~g---~~~~~~~~~~ 636 (673)
+..|++....+.++|...+| ||++.....+..-...+.+++. .....+-|.+. + ... .-+-+...|.
T Consensus 476 l~~A~~q~~~w~~~g~~~~vsVNlS~~ql~~~~f~~~l~~~L~~~~l~p~~L~lEITEs~l~~d~~~~~~~l~~Lr~lGv 555 (663)
T PRK10060 476 ILDVVRQAAKWRDKGINLRVAVNVSARQLADQTIFTALKQVLQELNFEYCPIDVELTESCLIENEELALSVIQQFSQLGA 555 (663)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEECHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHCCHHHHHHHHHHHHHCCC
T ss_conf 99999999999866998648999178994883599999999998299824699998186122399999999999997899
Q ss_pred EEEECCCCCCCCHHHHHHHCCCC
Q ss_conf 89835776768888999980999
Q gi|254780655|r 637 FIGMQGFGASGSCDLLYQHFGIN 659 (673)
Q Consensus 637 ~igid~Fg~sg~~~el~~~~Gld 659 (673)
.+++|+||.--+.=..++.+-+|
T Consensus 556 ~iALDDFGTGySSLsyL~~lPvd 578 (663)
T PRK10060 556 QVHLDDFGTGYSSLSQLARFPID 578 (663)
T ss_pred EEEEECCCCCHHHHHHHHHCCCC
T ss_conf 89998999973369998428999
No 377
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=23.94 E-value=40 Score=12.69 Aligned_cols=31 Identities=13% Similarity=0.202 Sum_probs=22.7
Q ss_pred EEECCCCCEEEEECCHHHHHHHHHHHHHHHC
Q ss_conf 9856997299995268899999999999973
Q gi|254780655|r 553 YISTPNAQVTIFSSGSELKIAVEACEILSSR 583 (673)
Q Consensus 553 ~~~~~~~dv~iia~G~~v~~al~aa~~L~~~ 583 (673)
++-+++.-+.++++|..+.+|.+.|..+.++
T Consensus 376 lvt~GgRvL~v~~~g~t~~eA~~~ay~~~~~ 406 (428)
T COG0151 376 LVTSGGRVLAVVGTGDTLEEAQEKAYEALEK 406 (428)
T ss_pred EEECCCEEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 9964885899996589999999999999963
No 378
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family; InterPro: IPR005910 Histone acetylation is carried out by a class of enzymes known as histone acetyltransferases (HATs), which catalyse the transfer of an acetyl group from acetyl-CoA to the lysine E-amino groups on the N-terminal tails of histones . Early indication that HATs were involved in transcription came from the observation that in actively transcribed regions of chromatin, histones tend to be hyperacetylated, whereas in transcriptionally silent regions histones are hypoacetylated. The histone acetyltransferases are divided into five families. These include the Gcn5-related acetyltransferases (GNATs); the MYST (for 'MOZ, Ybf2/Sas3, Sas2 and Tip60)-related HATs; p300/CBP HATs; the general transcription factor HATs, which include the TFIID subunit TAF250; and the nuclear hormone-related HATs SRC1 and ACTR (SRC3). The GCN5-related N-acetyltransferase superfamily includes such enzymes as the histone acetyltransferases GCN5 and Hat1, the elongator complex subunit Elp3, the mediator-complex subunit Nut1, and Hpa2 . Many GNATs share several functional domains, including an N-terminal region of variable length, an acetyltransferase domain that encompasses the conserved sequence motifs described above, a region that interacts with the coactivator Ada2, and a C-terminal bromodomain that is believed to interact with acetyl-lysine residues. Members of the GNAT family are important for the regulation of cell growth and development. In mice, knockouts of Gcn5L are embryonic lethal. Yeast Gcn5 is needed for normal progression through the G2M boundary and mitotic gene expression. The importance of GNATs is probably related to their role in transcription and DNA repair. The yeast GCN5 (yGCN5) transcriptional coactivator functions as a histone acetyltransferase (HAT) to promote transcriptional activation. The crystal structure of the yeast histone acetyltransferase Hat1-acetyl coenzyme A (AcCoA) shows that Hat1 has an elongated, curved structure, and the AcCoA molecule is bound in a cleft on the concave surface of the protein, marking the active site of the enzyme. A channel of variable width and depth that runs across the protein is probably the binding site for the histone substrate . The central protein core associated with AcCoA binding that appears to be structurally conserved among a superfamily of N-acetyltransferases, including yeast histone acetyltransferase 1 and Serratia marcescens aminoglycoside 3-N-acetyltransferase . The Saccharomyces cerevisiae member YPL086C has been characterised in vitro as an N-terminal acetyltransferase (2.3.1.48 from EC) for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases. In vivo, ELP3 gene deletion confers typical ELP phenotypes such as slow growth adaptation, slow gene activation, and temperature sensitivity. This suggests a role for the proteins as novel, tightly RNAPII-associated histone acetyltransferases in transcription of DNA packaged in chromatin ..
Probab=23.92 E-value=34 Score=13.20 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=14.9
Q ss_pred EEECCHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 211201245777765202567834999524
Q gi|254780655|r 501 LRPADSIETLECWQVALKEKNRPSVLSLSR 530 (673)
Q Consensus 501 ~~P~d~~E~~~~~~~al~~~~gP~~ir~~R 530 (673)
|.|...+|+..++-.+..- -|-.+|..|
T Consensus 358 Y~PY~~eEaveLiv~~~~~--~P~WvR~~R 385 (573)
T TIGR01211 358 YKPYTTEEAVELIVEIKKI--MPKWVRIQR 385 (573)
T ss_pred CCCCCHHHHHHHHHHHHHH--CCCCEEEEE
T ss_conf 9877678999999999973--897357757
No 379
>pfam00731 AIRC AIR carboxylase. Members of this family catalyse the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyse the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.
Probab=23.76 E-value=41 Score=12.67 Aligned_cols=32 Identities=34% Similarity=0.416 Sum_probs=20.5
Q ss_pred EEEECCHHHHHHHHHHHHHHHCCCC--EEEEECC
Q ss_conf 9995268899999999999973994--3998574
Q gi|254780655|r 562 TIFSSGSELKIAVEACEILSSRNIS--TRVVSVP 593 (673)
Q Consensus 562 ~iia~G~~v~~al~aa~~L~~~Gi~--~~Vi~~~ 593 (673)
+|.++-+-...+.++++.|++-||. ++|+|.+
T Consensus 5 IimGS~SD~~~~~~a~~~L~~~gi~~e~~V~SAH 38 (150)
T pfam00731 5 IIMGSDSDLPTMEKAAKVLKEFGIPYEVRVVSAH 38 (150)
T ss_pred EEECCHHHHHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf 9957673099999999999985997698676510
No 380
>pfam04395 Poxvirus_B22R Poxvirus B22R protein.
Probab=23.70 E-value=41 Score=12.66 Aligned_cols=12 Identities=17% Similarity=0.160 Sum_probs=6.0
Q ss_pred HHHHHHHHHCCC
Q ss_conf 332125663487
Q gi|254780655|r 279 EEIKATRKALNW 290 (673)
Q Consensus 279 ee~~~~~k~lg~ 290 (673)
+.+...++.||.
T Consensus 377 ~l~~~~~~~LG~ 388 (977)
T pfam04395 377 DLVLRLKKELGA 388 (977)
T ss_pred HHHHHHHHHCCC
T ss_conf 399999998089
No 381
>COG0409 HypD Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=23.56 E-value=41 Score=12.64 Aligned_cols=31 Identities=19% Similarity=0.163 Sum_probs=13.2
Q ss_pred EEECCC-CCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 984362-1143445578876522022330699
Q gi|254780655|r 164 VLVGDG-CLMEGISQEAISFAGHLGLSKLIVL 194 (673)
Q Consensus 164 ~iiGDG-~l~eG~~~EAl~~A~~~~l~nli~i 194 (673)
++++=| |.+..+..-.+..+...+++|+-++
T Consensus 136 VffaiGFETT~P~TA~~l~~~~~e~i~Nf~~l 167 (364)
T COG0409 136 VFFAIGFETTTPTTACMLLSAKGEGIENFFVL 167 (364)
T ss_pred EEEECCCCCCCCCHHHHHHHCCCCCCCEEEEE
T ss_conf 99957511589734788873444565347999
No 382
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=23.52 E-value=41 Score=12.64 Aligned_cols=26 Identities=27% Similarity=0.571 Sum_probs=14.9
Q ss_pred EEEECCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 999526889999999999997399439
Q gi|254780655|r 562 TIFSSGSELKIAVEACEILSSRNISTR 588 (673)
Q Consensus 562 ~iia~G~~v~~al~aa~~L~~~Gi~~~ 588 (673)
.++++|++.-.. .+++.+++.++.+.
T Consensus 181 ~v~~cGP~~Mmk-~v~~~~~~~~~~~~ 206 (248)
T PRK00054 181 AIYSCGPEIMMK-KVVEILKEKKVRAY 206 (248)
T ss_pred EEEEECCHHHHH-HHHHHHHHCCCCEE
T ss_conf 999969989999-99999875599599
No 383
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=23.50 E-value=41 Score=12.64 Aligned_cols=32 Identities=13% Similarity=0.077 Sum_probs=22.4
Q ss_pred EEEEECCHHHHHHHH-HHHHHHHCCCCEEEEEC
Q ss_conf 999952688999999-99999973994399857
Q gi|254780655|r 561 VTIFSSGSELKIAVE-ACEILSSRNISTRVVSV 592 (673)
Q Consensus 561 v~iia~G~~v~~al~-aa~~L~~~Gi~~~Vi~~ 592 (673)
..+|++-.+.+..++ |.++|+++|.+.=|.|-
T Consensus 389 ~~~VGFAAETe~li~~A~~KL~~K~~D~IvaNd 421 (476)
T PRK13982 389 PLVIGFAAETEHLIDNARAKLARKGCDWIVAND 421 (476)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEC
T ss_conf 889998038683799999999972989999807
No 384
>TIGR01455 glmM phosphoglucosamine mutase; InterPro: IPR006352 This family describes GlmM, phosphoglucosamine mutase, also designated MrsA and YhbF in Escherichia coli , UreC in Helicobacter pylori , and femR315 or FemD in Staphlococcus aureus . It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides..
Probab=23.27 E-value=42 Score=12.60 Aligned_cols=51 Identities=27% Similarity=0.262 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC-CCCCCCHHHHHHHHHHHH
Q ss_conf 86314799999999999985342688767845999843-621143445578876522
Q gi|254780655|r 130 GPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVG-DGCLMEGISQEAISFAGH 185 (673)
Q Consensus 130 G~lG~gis~a~G~A~a~k~~~~~~~~~~~d~~v~~iiG-DG~l~eG~~~EAl~~A~~ 185 (673)
.+|---+.+++|+|.++...+.+..++ .--|||| |-=++ |..+|+...||-
T Consensus 13 ~~lTae~al~LG~AaG~VL~~~~~~~~----~~~VviGkDTR~S-G~MlE~Al~AGL 64 (450)
T TIGR01455 13 EPLTAELALKLGAAAGRVLRRRGSRKS----APRVVIGKDTRLS-GYMLENALVAGL 64 (450)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCC----CCEEEEECCCCCC-HHHHHHHHHHHH
T ss_conf 767889999998999999740688898----8568983378865-889999999867
No 385
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=23.20 E-value=42 Score=12.60 Aligned_cols=12 Identities=8% Similarity=0.155 Sum_probs=5.7
Q ss_pred HHCCCCEEEEEC
Q ss_conf 973994399857
Q gi|254780655|r 581 SSRNISTRVVSV 592 (673)
Q Consensus 581 ~~~Gi~~~Vi~~ 592 (673)
+++|+++.|...
T Consensus 367 ~~~g~~~~~~~~ 378 (472)
T PRK06467 367 KEEGIEYETATF 378 (472)
T ss_pred HHCCCCEEEEEE
T ss_conf 876998899999
No 386
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=23.19 E-value=42 Score=12.59 Aligned_cols=177 Identities=16% Similarity=0.145 Sum_probs=77.6
Q ss_pred HHHHCCCEEE----CCCCCCCC---CCCCCHHHHC---CCCCHHHHHC----CCCEEEECCHH------HHHHHHHHHHC
Q ss_conf 1110000130----24543333---3333101000---2221011101----22112112012------45777765202
Q gi|254780655|r 459 SLMGIRVIHV----LTHDSIGL---GEDGPTHQPV---EHLAALRAIP----DLLVLRPADSI------ETLECWQVALK 518 (673)
Q Consensus 459 al~~~~v~~v----~th~gi~~---G~DGpTHq~i---edia~lr~iP----nl~v~~P~d~~------E~~~~~~~al~ 518 (673)
...+.|+.+- ...++||+ -.||.|-..+ -|.||+++=- +...|.|.=.. ++...++.|++
T Consensus 404 ~~l~eP~~~~~~~l~~sASIGIAlyP~DG~taE~LLRnADtAMY~AK~~GRN~~~FF~p~m~~~a~~RL~lE~dLr~ALe 483 (728)
T PRK11829 404 SQVTQPLFFDEITLRPSASIGITRYQAQQDTAESMMRNASTAMMAAHHEGRNQIMVFEPHLIEKTHKRLTQENDLLQAIE 483 (728)
T ss_pred HHHCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98458843578734002689997589998899999997999999999838982897688899999999999999999983
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCE----------------EEEECCH-HHHHHHHHHHHHH
Q ss_conf 5678349995244443345665532212347379985699729----------------9995268-8999999999999
Q gi|254780655|r 519 EKNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTPNAQV----------------TIFSSGS-ELKIAVEACEILS 581 (673)
Q Consensus 519 ~~~gP~~ir~~R~~~p~~~~~~~~~~~~~~G~~~~~~~~~~dv----------------~iia~G~-~v~~al~aa~~L~ 581 (673)
+. -..+.|- |..+.... -..|.=.++|=..++. .|+..|. .+.+|.+....+.
T Consensus 484 ~~--EF~LyYQ----PqVdL~TG----~IvGaEALLRW~HP~~GlIsP~eFIPlAEetGLI~~Lg~WVLeqAcrqla~W~ 553 (728)
T PRK11829 484 NH--DFTLFLQ----PQWDMKRQ----QVIGAEALLRWCQPDGSYVLPSGFVHFAEEEGMMVPLGNWVLEEACRILADWK 553 (728)
T ss_pred CC--CEEEEEC----CEEECCCC----CEEEEEEEEEECCCCCCEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 69--8799966----50886899----99999999316599998388899999998489889999999999999999998
Q ss_pred HCCCCEEE-EECCCCCHHCCCCHHHHHHHCCC-----CCEEEEECCCC-H----HH--HHHHHCCCCCEEEECCCCC
Q ss_conf 73994399-85746581000868899964367-----97799972860-2----78--9998457981898357767
Q gi|254780655|r 582 SRNISTRV-VSVPCFELFFEQSDSYRAQIIGS-----SPIKIAIEAGL-R----QG--WDAFIGSDGSFIGMQGFGA 645 (673)
Q Consensus 582 ~~Gi~~~V-i~~~s~k~ld~~~~~~~~~il~~-----~~~~vtiE~g~-~----~g--~~~~~~~~~~~igid~Fg~ 645 (673)
++|.+..| ||++.....+..-.+....++.. ....+-|.++. - .. .-+-+...|..+.+|+||-
T Consensus 554 ~~G~~l~VSVNLSa~QL~~~~fv~~l~~iL~~~glpP~~LeLEITEs~lm~d~e~a~~~L~~Lr~lGV~IALDDFGT 630 (728)
T PRK11829 554 ARGVSLPLSVNISGLQVQNKQFLPHLKTLISHYHIDPQQLLLEITETAQIQDLDEALRLLRELQGLGLLIALDDFGI 630 (728)
T ss_pred HCCCCCEEEEEECHHHHCCCCHHHHHHHHHHHHCCCHHHEEEECCCCCHHCCHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 64999769999599991998399999999998695845399980799122299999999999997899899969887
No 387
>PRK07236 hypothetical protein; Provisional
Probab=23.06 E-value=42 Score=12.58 Aligned_cols=22 Identities=14% Similarity=0.021 Sum_probs=11.5
Q ss_pred EEEEECCHHHHHHHHHHHHHHH
Q ss_conf 9999526889999999999997
Q gi|254780655|r 561 VTIFSSGSELKIAVEACEILSS 582 (673)
Q Consensus 561 v~iia~G~~v~~al~aa~~L~~ 582 (673)
...=..|.....|++=|-.|.+
T Consensus 316 ~m~P~~GQGan~AieDA~~La~ 337 (386)
T PRK07236 316 VARPHTAMGVAKAAGDAVALAE 337 (386)
T ss_pred CCCCCCCHHHHHHHHHHHHHHH
T ss_conf 5798510368999999999999
No 388
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level HMM (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=23.01 E-value=42 Score=12.57 Aligned_cols=11 Identities=9% Similarity=-0.127 Sum_probs=4.4
Q ss_pred HHHHCCCCCCC
Q ss_conf 88641444444
Q gi|254780655|r 217 RFRASGWNTLS 227 (673)
Q Consensus 217 ~~~a~Gw~~~~ 227 (673)
-.+.+|.++..
T Consensus 92 ~a~~~g~~~~~ 102 (355)
T TIGR03301 92 ICEYLGIPHTD 102 (355)
T ss_pred HHHHHCCCEEE
T ss_conf 99982996699
No 389
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=22.88 E-value=42 Score=12.55 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=6.4
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 688999999999999
Q gi|254780655|r 567 GSELKIAVEACEILS 581 (673)
Q Consensus 567 G~~v~~al~aa~~L~ 581 (673)
|..++.+++=+..|.
T Consensus 295 gQG~nlg~~Da~~La 309 (387)
T COG0654 295 GQGANLALEDAAALA 309 (387)
T ss_pred CHHHHHHHHHHHHHH
T ss_conf 045767798999999
No 390
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit; InterPro: IPR006394 These sequences represent the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation. ; GO: 0016866 intramolecular transferase activity, 0019670 anaerobic glutamate catabolic process.
Probab=22.81 E-value=42 Score=12.54 Aligned_cols=71 Identities=23% Similarity=0.306 Sum_probs=47.5
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9843621143445578876522022330699962763223223556782179988641444444444406788888887
Q gi|254780655|r 164 VLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTLSVNGHDHHAITSTLRK 242 (673)
Q Consensus 164 ~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~Gw~~~~vdG~d~~~i~~a~~~ 242 (673)
-+-|-|+...==..|-+.-|| |+.+.+.+=-|- -+....-+++.+||+.+||+=.---+|+++...+++++
T Consensus 60 SlYGhg~~DC~Glr~~c~eaG---l~~illYVGGNl-----vVGk~df~dV~~rFkeMGfDRVfap~t~~E~v~~~~k~ 130 (134)
T TIGR01501 60 SLYGHGEIDCAGLRDKCAEAG---LDAILLYVGGNL-----VVGKTDFEDVEKRFKEMGFDRVFAPQTDLEAVVDALKK 130 (134)
T ss_pred CCCCCCCCCHHHHHHHHHHCC---CCCEEEEECCEE-----EECCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHH
T ss_conf 020780001245789998658---882799876766-----55776736788887645873323698582278999987
No 391
>PRK13748 putative mercuric reductase; Provisional
Probab=22.76 E-value=42 Score=12.54 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=18.6
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 59998436211434455788765220223306999627
Q gi|254780655|r 161 YTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNN 198 (673)
Q Consensus 161 ~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N 198 (673)
|=++|||=|. -.+.|...|+.+++. +.+++.+
T Consensus 99 yDliVIG~Gp----aG~~AA~~Aa~~G~k--ValVE~~ 130 (561)
T PRK13748 99 LHVAVIGSGG----AAMAAALKAVEQGAR--VTLIERG 130 (561)
T ss_pred CCEEEECCCH----HHHHHHHHHHHCCCE--EEEEECC
T ss_conf 7689989588----999999999978997--9999479
No 392
>COG0260 PepB Leucyl aminopeptidase [Amino acid transport and metabolism]
Probab=22.75 E-value=42 Score=12.54 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=15.1
Q ss_pred EEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCC
Q ss_conf 995268899999999999973994399857465810008
Q gi|254780655|r 563 IFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQ 601 (673)
Q Consensus 563 iia~G~~v~~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~ 601 (673)
+.+.-..+...+..|.+= ..=.++-||-.++++++
T Consensus 378 ~fs~dd~La~~l~~As~~----~gE~~WrLPl~~~y~~~ 412 (485)
T COG0260 378 LFSNDDELANQLLAASEE----TGEPLWRLPLHEEYRKQ 412 (485)
T ss_pred CCCCCHHHHHHHHHHHHH----CCCCCCCCCCCHHHHHH
T ss_conf 332899999999999987----19832058798788964
No 393
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=22.62 E-value=43 Score=12.52 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=13.2
Q ss_pred EEEEECCHHHHHHHHHHHHHHHC
Q ss_conf 99995268899999999999973
Q gi|254780655|r 561 VTIFSSGSELKIAVEACEILSSR 583 (673)
Q Consensus 561 v~iia~G~~v~~al~aa~~L~~~ 583 (673)
+-|+=+...+..|++--+.|+++
T Consensus 498 ~gi~R~~~~L~~al~~l~~l~~~ 520 (631)
T PRK07803 498 VGIIRKEDEISQALEKLAELKER 520 (631)
T ss_pred CCEEECHHHHHHHHHHHHHHHHH
T ss_conf 88898789999999999999999
No 394
>TIGR02053 MerA mercuric reductase; InterPro: IPR011796 This entry represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH .; GO: 0016152 mercury (II) reductase activity, 0045340 mercury ion binding, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport, 0050787 detoxification of mercury ion.
Probab=22.57 E-value=43 Score=12.51 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=16.6
Q ss_pred CCEEEECCCCCCC----CHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 8189835776768----888999980999899999999984
Q gi|254780655|r 635 GSFIGMQGFGASG----SCDLLYQHFGINAIAIVDMVERKL 671 (673)
Q Consensus 635 ~~~igid~Fg~sg----~~~el~~~~Gld~~~I~~~i~~~L 671 (673)
++++|+.=+.+.+ ...-+-=++|||.+.|.+++--++
T Consensus 429 GkilGv~~vA~~A~e~I~~A~~ai~~GlTVdD~idt~h~fp 469 (494)
T TIGR02053 429 GKILGVQVVAEEAAEVINEAALAIKAGLTVDDLIDTLHPFP 469 (494)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCC
T ss_conf 42778775231178899999999980783778873115456
No 395
>TIGR02023 BchP-ChlP geranylgeranyl reductase; InterPro: IPR010253 This entry represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll . It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).; GO: 0045550 geranylgeranyl reductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=22.46 E-value=43 Score=12.50 Aligned_cols=43 Identities=21% Similarity=0.209 Sum_probs=27.7
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 99843621143445578876522022330699962763223223556782
Q gi|254780655|r 163 YVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADST 212 (673)
Q Consensus 163 ~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~ 212 (673)
++||| |.-.++.+-|-|.-+|. =+++++-|-..+ .|+++..+-
T Consensus 3 V~viG-GGPsGA~AAe~LA~~G~-----~tiLlER~l~~~-KPCGGAIPp 45 (408)
T TIGR02023 3 VAVIG-GGPSGAAAAETLARAGI-----ETILLERALSRI-KPCGGAIPP 45 (408)
T ss_pred EEEEE-CCCCHHHHHHHHHHCCC-----EEEEEEHHHCCC-CCCCCCCCH
T ss_conf 78981-68506899999986497-----488630243265-888886651
No 396
>PRK05568 flavodoxin; Provisional
Probab=22.38 E-value=43 Score=12.48 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=9.3
Q ss_pred CHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 68899999999999973994399857
Q gi|254780655|r 567 GSELKIAVEACEILSSRNISTRVVSV 592 (673)
Q Consensus 567 G~~v~~al~aa~~L~~~Gi~~~Vi~~ 592 (673)
|++-..|-..++-|++.|+++++.++
T Consensus 13 GnTe~mA~~Iaegl~~~Gv~V~~~~~ 38 (142)
T PRK05568 13 GNTEAMANLIAEGAKENGLEVKLLNV 38 (142)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 54999999999999866983999980
No 397
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=22.37 E-value=43 Score=12.48 Aligned_cols=35 Identities=9% Similarity=0.129 Sum_probs=14.8
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 845999843621143445578876522022330699
Q gi|254780655|r 159 DHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVL 194 (673)
Q Consensus 159 d~~v~~iiGDG~l~eG~~~EAl~~A~~~~l~nli~i 194 (673)
|.-|+++-+....+-+ +--+..+|-.++++.+++|
T Consensus 96 D~AviVv~a~~GVe~~-T~~~w~~a~~~~iP~iifI 130 (267)
T cd04169 96 DSAVMVIDAAKGVEPQ-TRKLFEVCRLRGIPIITFI 130 (267)
T ss_pred HCEEEEEECCCCCCHH-HHHHHHHHHHCCCCEEEEE
T ss_conf 4547995256665355-8999999997299979998
No 398
>KOG0460 consensus
Probab=22.27 E-value=43 Score=12.47 Aligned_cols=38 Identities=21% Similarity=0.440 Sum_probs=30.3
Q ss_pred CCCEEEEEEC-CCCCCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 7845999843-621143445578876522022330699962
Q gi|254780655|r 158 IDHYTYVLVG-DGCLMEGISQEAISFAGHLGLSKLIVLWDN 197 (673)
Q Consensus 158 ~d~~v~~iiG-DG~l~eG~~~EAl~~A~~~~l~nli~i~d~ 197 (673)
.|.-+.++-+ ||-|. +.-|-+.+|-.-+.+++++++|-
T Consensus 141 MDGaILVVaatDG~MP--QTrEHlLLArQVGV~~ivvfiNK 179 (449)
T KOG0460 141 MDGAILVVAATDGPMP--QTREHLLLARQVGVKHIVVFINK 179 (449)
T ss_pred CCCEEEEEECCCCCCC--CHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 6734999974789884--06888888987287649999712
No 399
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=22.26 E-value=32 Score=13.39 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=14.9
Q ss_pred HHHHHHHHCCCCHHHHHCC
Q ss_conf 8888751102210222013
Q gi|254780655|r 238 STLRKAQLSDKPTMIACET 256 (673)
Q Consensus 238 ~a~~~ak~~~kP~~I~~~T 256 (673)
+|+++||+.+||.+|.+.+
T Consensus 6 eal~~Ak~e~KpIflsig~ 24 (124)
T cd02955 6 EAFEKARREDKPIFLSIGY 24 (124)
T ss_pred HHHHHHHHCCCCEEEEEEC
T ss_conf 9999999729988999746
No 400
>PRK08246 threonine dehydratase; Provisional
Probab=22.22 E-value=43 Score=12.46 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=15.8
Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf 799886414444444444067888888
Q gi|254780655|r 214 QYARFRASGWNTLSVNGHDHHAITSTL 240 (673)
Q Consensus 214 ~~~~~~a~Gw~~~~vdG~d~~~i~~a~ 240 (673)
-..+.++||=+|+.+++.--++...+.
T Consensus 104 K~~~i~~~GAeVi~~~~~~~~a~~~a~ 130 (307)
T PRK08246 104 KVDRLRDYGAEVVVGGAEYADALAAAQ 130 (307)
T ss_pred HHHHHHHCCCEEEEECCCCHHHHHHHH
T ss_conf 999999759879998687159999999
No 401
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=22.21 E-value=43 Score=12.46 Aligned_cols=19 Identities=37% Similarity=0.492 Sum_probs=11.0
Q ss_pred HHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 9999999707688998898640
Q gi|254780655|r 85 LYYALLYLLGYQDVTIEDIKNF 106 (673)
Q Consensus 85 ~~Y~~~~l~G~~~~~~e~l~~~ 106 (673)
+..+.+...|| +++++++=
T Consensus 319 AkvaaklalG~---~L~ei~n~ 337 (1068)
T PRK12815 319 AKIAAKLAVGY---TLDEIKNP 337 (1068)
T ss_pred HHHHHHHHCCC---CHHHCCCC
T ss_conf 99999986388---77770664
No 402
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=22.19 E-value=44 Score=12.46 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=9.6
Q ss_pred CEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 29999526889999999999997
Q gi|254780655|r 560 QVTIFSSGSELKIAVEACEILSS 582 (673)
Q Consensus 560 dv~iia~G~~v~~al~aa~~L~~ 582 (673)
.+-..-+...+..|.+.-..+++
T Consensus 372 rvkf~P~~~~L~~C~e~G~~~A~ 394 (479)
T PRK05452 372 KAKWRPDGDALELCREHGREIAR 394 (479)
T ss_pred EEEECCCHHHHHHHHHHHHHHHH
T ss_conf 57757898999999999999998
No 403
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=21.97 E-value=44 Score=12.43 Aligned_cols=40 Identities=18% Similarity=0.378 Sum_probs=25.1
Q ss_pred CCCEEEEECCHHHHHHH-HHHHHHHHCCCCEEEEECCCCCHHC
Q ss_conf 97299995268899999-9999999739943998574658100
Q gi|254780655|r 558 NAQVTIFSSGSELKIAV-EACEILSSRNISTRVVSVPCFELFF 599 (673)
Q Consensus 558 ~~dv~iia~G~~v~~al-~aa~~L~~~Gi~~~Vi~~~s~k~ld 599 (673)
+.||.|+ |+.+...+ +..+.+++.||.+.|||+--....+
T Consensus 48 ~~DvvLl--GPQv~y~~~~~~~~~~~~giPV~vI~~~dYG~mn 88 (102)
T COG1440 48 NADVVLL--GPQVRYMLKQLKEAAEEKGIPVEVIDMLDYGMMN 88 (102)
T ss_pred CCCEEEE--CHHHHHHHHHHHHHHCCCCCCEEEECHHHCCCCC
T ss_conf 0898998--7289988999999843159976785789915768
No 404
>TIGR02415 23BDH acetoin reductases; InterPro: IPR014007 One member of this family, as characterised in Klebsiella terrigena , is able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also capable of irreversible reduction of diacetyl with NADH to acetoin. There has been a reuctance to classify the enzyme as either 1.1.1.4 from EC, which is (R,R)-butanediol dehydrogenase, or 1.1.1.5 from EC, which is acetoin dehydrogenase without a specified stereochemistry . Another member of this family, from Corynebacterium glutamicum (Brevibacterium flavum), is called L-2,3-butanediol dehydrogenase . This enzyme is a homotetramer in the family of short chain dehydrogenases (IPR002198 from INTERPRO). .
Probab=21.95 E-value=44 Score=12.43 Aligned_cols=47 Identities=11% Similarity=0.169 Sum_probs=27.9
Q ss_pred EEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCC--CCCCCCHHHHHHHHHHHHH
Q ss_conf 69996276322322355678217998864144444--4444406788888887511
Q gi|254780655|r 192 IVLWDNNGISIDGPISLADSTDQYARFRASGWNTL--SVNGHDHHAITSTLRKAQL 245 (673)
Q Consensus 192 i~i~d~N~~si~~~~~~~~~~~~~~~~~a~Gw~~~--~vdG~d~~~i~~a~~~ak~ 245 (673)
|+|.|-|++- .....+.+.++..|.+-+ .+|=-|-+++.+++++|..
T Consensus 27 vav~D~n~Qe-------~~A~~t~~~i~~~G~~Ava~~~DV~~k~~~~~~i~~A~~ 75 (258)
T TIGR02415 27 VAVADLNNQE-------ETAKETAKEINQKGGKAVAYKLDVSDKSQVFEAIDQAVE 75 (258)
T ss_pred EEEECCCCCH-------HHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 7872566636-------899999999986697379986473456789999999999
No 405
>PRK07334 threonine dehydratase; Provisional
Probab=21.93 E-value=44 Score=12.42 Aligned_cols=28 Identities=21% Similarity=0.182 Sum_probs=13.9
Q ss_pred HHHHHCCCCCCCCCCCCHH-HHHHHHHHHH
Q ss_conf 9886414444444444067-8888888751
Q gi|254780655|r 216 ARFRASGWNTLSVNGHDHH-AITSTLRKAQ 244 (673)
Q Consensus 216 ~~~~a~Gw~~~~vdG~d~~-~i~~a~~~ak 244 (673)
.+.++||=+|+.. |.+++ +...|.+-++
T Consensus 108 ~~~r~~GA~Vil~-g~~~~~a~~~A~~~a~ 136 (399)
T PRK07334 108 ERTRGFGAEVVLE-GDTFDEARAHARELAE 136 (399)
T ss_pred HHHHHCCCEEEEE-CCCCHHHHHHHHHHHH
T ss_conf 9998569779997-8981699999999998
No 406
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=21.80 E-value=44 Score=12.40 Aligned_cols=19 Identities=16% Similarity=0.377 Sum_probs=9.7
Q ss_pred HHHHHHHHHHCCCCEEEEE
Q ss_conf 9999999997399439985
Q gi|254780655|r 573 AVEACEILSSRNISTRVVS 591 (673)
Q Consensus 573 al~aa~~L~~~Gi~~~Vi~ 591 (673)
...+++.|.++|+++-+++
T Consensus 54 G~~~a~~l~~~gvdvvi~~ 72 (121)
T COG1433 54 GIRIAELLVDEGVDVVIAS 72 (121)
T ss_pred HHHHHHHHHHCCCCEEEEC
T ss_conf 1779999997699899977
No 407
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=21.74 E-value=35 Score=13.16 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=11.5
Q ss_pred HHHHHHHHCCCCHHHHH
Q ss_conf 88887511022102220
Q gi|254780655|r 238 STLRKAQLSDKPTMIAC 254 (673)
Q Consensus 238 ~a~~~ak~~~kP~~I~~ 254 (673)
+|+++|++.+||++|..
T Consensus 2 ~al~~a~~~gKpVlvdf 18 (104)
T cd02953 2 AALAQALAQGKPVFVDF 18 (104)
T ss_pred HHHHHHHHCCCCEEEEE
T ss_conf 78999998299199999
No 408
>TIGR03035 trp_arylform arylformamidase. One of several pathways of tryptophan degradation is as follows: tryptophan 2,3-dioxygenase (1.13.11.11) uses 02 to convert Trp to L-formylkynurenine. Arylformamidase (3.5.1.9) hydrolyzes the product to L-kynurenine and formate. Kynureninase (3.7.1.3) hydrolyzes L-kynurenine to anthranilate plus alanine. Members of the seed alignment for this model are bacterial predicted metal-dependent hydrolases. All are supported as arylformamidase (3.5.1.9) by an operon structure in which kynureninase and/or tryptophan 2,3-dioxygenase genes are adjacent. The members from Bacillus cereus, Pseudomonas aeruginosa and Ralstonia metallidurans were characterized. An example from Pseudomonas fluorescens is given the gene symbol qbsH instead of kynB because of its role in quinolobactin biosynthesis, which begins with tryptophan. All members of this family should be arylformamidase (3.5.1.9).
Probab=21.71 E-value=44 Score=12.39 Aligned_cols=48 Identities=10% Similarity=0.204 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHCCCCHHHHHHHCCCCCEEEEECC
Q ss_conf 99999999997399439985746581000868899964367977999728
Q gi|254780655|r 572 IAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKIAIEA 621 (673)
Q Consensus 572 ~al~aa~~L~~~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~vtiE~ 621 (673)
...+||+.|.++|++.-=+|.+|+.+++...-..-..++.+. ++.+|.
T Consensus 124 l~~eaa~~L~e~~i~~vGiD~~S~D~~~~~~~~~H~~ll~~g--i~iiE~ 171 (206)
T TIGR03035 124 VAPDTIELLAEKGVRLIGIDTPSVDPLDSKTLDAHHALFRHG--MAILEN 171 (206)
T ss_pred CCHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHCC--EEEEEC
T ss_conf 599999999978985999747867876677629999998799--689978
No 409
>PRK07538 hypothetical protein; Provisional
Probab=21.57 E-value=45 Score=12.37 Aligned_cols=15 Identities=13% Similarity=0.116 Sum_probs=6.8
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 688999999999999
Q gi|254780655|r 567 GSELKIAVEACEILS 581 (673)
Q Consensus 567 G~~v~~al~aa~~L~ 581 (673)
|.....|++=|-.|.
T Consensus 314 GqGan~AieDA~~La 328 (413)
T PRK07538 314 SNGASQAILDARALA 328 (413)
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 017879999999999
No 410
>PRK05883 acyl carrier protein; Validated
Probab=21.53 E-value=44 Score=12.40 Aligned_cols=37 Identities=27% Similarity=0.396 Sum_probs=24.8
Q ss_pred CEEEEECCCCHHHHHHHHHH----CCCCCCCHHHHHHHHCCC
Q ss_conf 77998565201899999997----076889988986400038
Q gi|254780655|r 73 DRFVLSAGHGSMLYYALLYL----LGYQDVTIEDIKNFRTIG 110 (673)
Q Consensus 73 Dr~v~s~GH~s~~~Y~~~~l----~G~~~~~~e~l~~~r~~~ 110 (673)
-|+|=|.|--|.++|..+.. +|.+ ++.|+|.++++.|
T Consensus 32 ~rLvdDlG~DSl~f~~~vi~ie~~fGi~-i~eEdll~~~TVG 72 (85)
T PRK05883 32 ARLVDDVGLDSVAFAVGMVAIEERLGVA-LSEEDLLSCDTVG 72 (85)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHCCC-CCHHHHHCCCHHH
T ss_conf 4655640734799999999999986663-5899985236099
No 411
>PRK07049 methionine gamma-lyase; Validated
Probab=21.51 E-value=45 Score=12.36 Aligned_cols=79 Identities=20% Similarity=0.189 Sum_probs=45.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCC-CCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 143445578876522022330699962763223223556782179988641444-4444444067888888875110221
Q gi|254780655|r 171 LMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWN-TLSVNGHDHHAITSTLRKAQLSDKP 249 (673)
Q Consensus 171 l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~Gw~-~~~vdG~d~~~i~~a~~~ak~~~kP 249 (673)
..-||+-=+..+....+-..-|+. -++-+ |.+... ....+..+|.+ +.-+|+.|.+.+.++++++....+.
T Consensus 104 ~sSGmaAi~~~ll~ll~~Gd~iv~-~~~~Y---ggT~~l----~~~~l~~~GI~~~~~~d~~d~~~~~~~i~~~~~~~~T 175 (427)
T PRK07049 104 FSSGMSAIATTLLAFVRPGDVIVH-SQPLY---GGTETL----LAKTFRNFGVGAVGFADGVSEAAIEAAAEAAAAKGRV 175 (427)
T ss_pred ECCHHHHHHHHHHHHCCCCCEEEE-CCCCC---HHHHHH----HHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCE
T ss_conf 346999999999985189999998-99982---789999----9999997598899970899999999999862147870
Q ss_pred HHHHHCCC
Q ss_conf 02220133
Q gi|254780655|r 250 TMIACETV 257 (673)
Q Consensus 250 ~~I~~~T~ 257 (673)
.+|.+.|.
T Consensus 176 klv~~Esp 183 (427)
T PRK07049 176 SLIYIETP 183 (427)
T ss_pred EEEEEECC
T ss_conf 69999789
No 412
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases , . However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity . It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ and other members of this family turned out to be erroneous , .; GO: 0009024 tagatose-6-phosphate kinase activity, 0019402 galactitol metabolic process.
Probab=21.42 E-value=42 Score=12.60 Aligned_cols=20 Identities=30% Similarity=0.596 Sum_probs=14.5
Q ss_pred HHHHHHHHHHCCCCHHHHHC
Q ss_conf 88888875110221022201
Q gi|254780655|r 236 ITSTLRKAQLSDKPTMIACE 255 (673)
Q Consensus 236 i~~a~~~ak~~~kP~~I~~~ 255 (673)
|..|++.|+.++.|++|++-
T Consensus 26 lEAA~~~A~~~~~~VLIEAT 45 (430)
T TIGR02810 26 LEAALRRARASGTPVLIEAT 45 (430)
T ss_pred HHHHHHHHHHCCCCCEEEEC
T ss_conf 99999988752897137731
No 413
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=21.15 E-value=46 Score=12.31 Aligned_cols=26 Identities=15% Similarity=0.438 Sum_probs=14.0
Q ss_pred EEEECCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 999526889999999999997399439
Q gi|254780655|r 562 TIFSSGSELKIAVEACEILSSRNISTR 588 (673)
Q Consensus 562 ~iia~G~~v~~al~aa~~L~~~Gi~~~ 588 (673)
.++++|+..-. -.+++.+++.|+.+.
T Consensus 182 ~i~~cGP~~Mm-k~v~~~~~~~gi~~~ 207 (246)
T cd06218 182 VVYACGPEPML-KAVAELAAERGVPCQ 207 (246)
T ss_pred EEEEECCHHHH-HHHHHHHHHCCCCEE
T ss_conf 99997999999-999999997399699
No 414
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=21.10 E-value=46 Score=12.31 Aligned_cols=95 Identities=16% Similarity=0.237 Sum_probs=48.0
Q ss_pred CEEEE---ECCHHHHHHHHHHHHHHH--CCCCEEEEECCCCCHHCCCCHHHHHHHCCCCCEEE---EECCCCHHHHHHH-
Q ss_conf 29999---526889999999999997--39943998574658100086889996436797799---9728602789998-
Q gi|254780655|r 560 QVTIF---SSGSELKIAVEACEILSS--RNISTRVVSVPCFELFFEQSDSYRAQIIGSSPIKI---AIEAGLRQGWDAF- 630 (673)
Q Consensus 560 dv~ii---a~G~~v~~al~aa~~L~~--~Gi~~~Vi~~~s~k~ld~~~~~~~~~il~~~~~~v---tiE~g~~~g~~~~- 630 (673)
.|+|+ .+|++-..|-..++-|++ +|+.++++|+....+ .....++......++ |++++.-.....+
T Consensus 249 ~v~IvY~SmyG~T~~mA~aia~gl~~~~~gv~V~~~d~~~~~~-----s~i~~~i~~a~~~ilGsPT~n~~~~p~i~~~l 323 (395)
T PRK11921 249 QITIIYDTMWNSTRRMAEAIAEGIKKANPDVTVKLFNSAKSDK-----NDIITEVFKSKAILVGSPTINRGILSSTAGIL 323 (395)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCH-----HHHHHHHHHCCCEEEECCCCCCCCHHHHHHHH
T ss_conf 4999997760679999999999998408996699998988999-----99999998669589972673776458999999
Q ss_pred -----HCCCCCEEEE-CCCCCCCCH----HHHHHHCCCC
Q ss_conf -----4579818983-577676888----8999980999
Q gi|254780655|r 631 -----IGSDGSFIGM-QGFGASGSC----DLLYQHFGIN 659 (673)
Q Consensus 631 -----~~~~~~~igi-d~Fg~sg~~----~el~~~~Gld 659 (673)
+...++..++ -.||-||-. ++.++..|+.
T Consensus 324 ~~l~~~~~~~K~~~~FGSyGWsgea~~~i~~~l~~~g~~ 362 (395)
T PRK11921 324 EEIKGLGFKEKKAAAFGSYGWSGESVKIITERLKKAGFE 362 (395)
T ss_pred HHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 999727667988999961787877899999999987992
No 415
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=21.08 E-value=46 Score=12.30 Aligned_cols=37 Identities=22% Similarity=0.452 Sum_probs=25.6
Q ss_pred CCCCCEEEEECCH--HHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 6997299995268--89999999999997399439985746
Q gi|254780655|r 556 TPNAQVTIFSSGS--ELKIAVEACEILSSRNISTRVVSVPC 594 (673)
Q Consensus 556 ~~~~dv~iia~G~--~v~~al~aa~~L~~~Gi~~~Vi~~~s 594 (673)
.++++++++++|. +|...-+|.+.+++++. .|+-.|+
T Consensus 59 ee~~E~ivvGTG~~G~l~l~~ea~e~~r~k~~--~vi~~pT 97 (121)
T COG1504 59 EEGPEVIVVGTGQSGMLELSEEAREFFRKKGC--EVIELPT 97 (121)
T ss_pred HCCCCEEEEECCCEEEEEECHHHHHHHHHCCC--EEEEECC
T ss_conf 60996899914842589958999999985497--0798279
No 416
>PRK06753 hypothetical protein; Provisional
Probab=21.04 E-value=46 Score=12.30 Aligned_cols=16 Identities=25% Similarity=0.243 Sum_probs=7.5
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 2688999999999999
Q gi|254780655|r 566 SGSELKIAVEACEILS 581 (673)
Q Consensus 566 ~G~~v~~al~aa~~L~ 581 (673)
.|..+..|++=|-.|+
T Consensus 286 ~GQGan~aieDA~~LA 301 (373)
T PRK06753 286 MGQGAGQAMEDAIVLV 301 (373)
T ss_pred CCCHHHHHHHHHHHHH
T ss_conf 0001779999999999
No 417
>cd00242 Ecotin Protease Inhibitor Ecotin; homodimeric protease inhibitor. Protease Inhibitor Ecotin; homodimeric protease inhibitor which binds two chymotrypsin-like serine proteases to form a heterotetramer. Found in bacterial periplasm. Inhibits a broad range of serine proteases including collagenase, trypsin, chymotrypsin, elastase, and factor Xa but not thrombin. Inhibition mechanism involves binding at two different protease contact sites: the primary and secondary binding sites. Primary site loops of ecotin bind to the active site of target proteases in a substrate-like manner with the P1 residue in ecotin mimicking the interactions of a canonical P1 substrate residue.
Probab=21.01 E-value=42 Score=12.56 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=20.2
Q ss_pred EEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
Q ss_conf 999627632232235567821799886414444444444
Q gi|254780655|r 193 VLWDNNGISIDGPISLADSTDQYARFRASGWNTLSVNGH 231 (673)
Q Consensus 193 ~i~d~N~~si~~~~~~~~~~~~~~~~~a~Gw~~~~vdG~ 231 (673)
+-+|+|...+.|.++.- .+++.|.++..+++-
T Consensus 42 ~~vDCN~~~l~G~lee~-------tl~GwGY~YY~v~~~ 73 (136)
T cd00242 42 LEVDCNQHRLGGNLEEK-------TLEGWGYDYYVVDKV 73 (136)
T ss_pred EEEECCCCEECCEEEEE-------EECCCCCEEEEECCC
T ss_conf 99724764785678784-------325778325998158
No 418
>TIGR00551 nadB L-aspartate oxidase; InterPro: IPR005288 L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbour-joining trees.; GO: 0008734 L-aspartate oxidase activity, 0009435 NAD biosynthetic process, 0005737 cytoplasm.
Probab=20.94 E-value=46 Score=12.28 Aligned_cols=92 Identities=17% Similarity=0.182 Sum_probs=50.6
Q ss_pred EEEEEECCC-CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 599984362-1143445578876522022330699962763223223556782179988641444444444406788888
Q gi|254780655|r 161 YTYVLVGDG-CLMEGISQEAISFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTLSVNGHDHHAITST 239 (673)
Q Consensus 161 ~v~~iiGDG-~l~eG~~~EAl~~A~~~~l~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~Gw~~~~vdG~d~~~i~~a 239 (673)
+-++|++-+ +.++|.++=| -.=+=+.++.|+-||+.++.+.. .-+.| =+|.+++..-
T Consensus 26 ~~V~v~~K~a~~~~~~s~yA--------QGGIAa~~~~~DdSi~~Hv~DTL-------~AGaG-------~cD~~aV~~v 83 (546)
T TIGR00551 26 RDVVVISKAAEVKESASYYA--------QGGIAAALAETDDSIDAHVEDTL-------AAGAG-------LCDEEAVEFV 83 (546)
T ss_pred CEEEEECCCCCCCCCCCCEE--------CCCEEEECCCCCCCHHHHHHHHH-------HHCCC-------CCCHHHHHHH
T ss_conf 63789758755556752000--------11266303875585687789999-------84467-------8868899999
Q ss_pred HHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 88751102210222013345557000477110334372233212566
Q gi|254780655|r 240 LRKAQLSDKPTMIACETVIGFGSPNRAGTNKVHGSALGQEEIKATRK 286 (673)
Q Consensus 240 ~~~ak~~~kP~~I~~~T~kG~G~~~~e~~~~~HG~~l~~ee~~~~~k 286 (673)
+.+++.. | ......|++|-+ |..+-|+|.+..+|+
T Consensus 84 ~~~~~~a-----v--~~L~~~Gv~FD~-----~~~gnGee~~~LtrE 118 (546)
T TIGR00551 84 VSDAKEA-----V--QELVEAGVSFDR-----NEQGNGEERLALTRE 118 (546)
T ss_pred HHHHHHH-----H--HHHHHCCCEECC-----CCCCCCCCCCCCCCC
T ss_conf 8536899-----9--999866922026-----779887443100133
No 419
>TIGR01394 TypA_BipA GTP-binding protein TypA; InterPro: IPR006298 This bacterial (and Arabidopsis) protein, termed TypA or BipA, is a GTP-binding protein. It is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.; GO: 0005525 GTP binding, 0005622 intracellular.
Probab=20.92 E-value=42 Score=12.56 Aligned_cols=36 Identities=17% Similarity=0.429 Sum_probs=18.5
Q ss_pred CCCCCCC-----C--CCCCHHHHHHHHHH-H----HHCCCCHHHHHCC
Q ss_conf 1444444-----4--44406788888887-5----1102210222013
Q gi|254780655|r 221 SGWNTLS-----V--NGHDHHAITSTLRK-A----QLSDKPTMIACET 256 (673)
Q Consensus 221 ~Gw~~~~-----v--dG~d~~~i~~a~~~-a----k~~~kP~~I~~~T 256 (673)
.||-... . +..|++-|.+++-+ . -..+.|.-+.+-|
T Consensus 171 ~G~A~l~~~~dg~~~~~~~m~PLFd~I~~hvPaP~~~~d~PlQmlvt~ 218 (609)
T TIGR01394 171 AGWASLDKDKDGLDDDSEDMAPLFDAILRHVPAPKGDLDEPLQMLVTN 218 (609)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHEEEE
T ss_conf 672014466577887220178999898640688898887624210001
No 420
>PTZ00336 elongation factor 1-alpha; Provisional
Probab=20.92 E-value=39 Score=12.79 Aligned_cols=37 Identities=22% Similarity=0.379 Sum_probs=27.2
Q ss_pred EEEE-ECCCCCC-----CHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 9998-4362114-----3445578876522022330699962763
Q gi|254780655|r 162 TYVL-VGDGCLM-----EGISQEAISFAGHLGLSKLIVLWDNNGI 200 (673)
Q Consensus 162 v~~i-iGDG~l~-----eG~~~EAl~~A~~~~l~nli~i~d~N~~ 200 (673)
+.+| .-+|++. .|++-|=+.++..++..++|+.+ |+|
T Consensus 113 iLVVdA~~G~~e~g~~~~gQTreHl~i~~~Lgv~~iiV~v--NKm 155 (449)
T PTZ00336 113 ILMIDSTHGGFEAGISKDGQTREHALLAFTLGVKQMVVCC--NKM 155 (449)
T ss_pred EEEEECCCCCEECCCCCCCCCHHHHHHHHHCCCCEEEEEE--ECC
T ss_conf 9999878774103556677539999999866997799998--620
No 421
>PRK05269 transaldolase B; Provisional
Probab=20.69 E-value=47 Score=12.25 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=12.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 444444440678888888751102210222
Q gi|254780655|r 224 NTLSVNGHDHHAITSTLRKAQLSDKPTMIA 253 (673)
Q Consensus 224 ~~~~vdG~d~~~i~~a~~~ak~~~kP~~I~ 253 (673)
.++.+|--|+++|.+ +.---.+--|++|.
T Consensus 12 T~VVaDTgD~~~I~~-~~P~DaTTNPSLil 40 (320)
T PRK05269 12 TTVVADTGDIEAIKK-YQPQDATTNPSLIL 40 (320)
T ss_pred CEEECCCCCHHHHHH-CCCCCCCCCHHHHH
T ss_conf 768668758999986-09987771899999
No 422
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=20.54 E-value=47 Score=12.23 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=8.9
Q ss_pred EEEECC---HHHHHHHHHHHHHHH
Q ss_conf 999526---889999999999997
Q gi|254780655|r 562 TIFSSG---SELKIAVEACEILSS 582 (673)
Q Consensus 562 ~iia~G---~~v~~al~aa~~L~~ 582 (673)
.++++| ..+..+--+++.+++
T Consensus 374 l~~a~Gh~~~G~~~ap~~g~~lA~ 397 (416)
T PRK00711 374 LFLNTGHGTLGWTMACGSGQLLAD 397 (416)
T ss_pred EEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 999988836899999999999999
Done!