RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780655|ref|YP_003065068.1| transketolase [Candidatus Liberibacter asiaticus str. psy62] (673 letters) >gnl|CDD|180309 PRK05899, PRK05899, transketolase; Reviewed. Length = 624 Score = 971 bits (2513), Expect = 0.0 Identities = 326/663 (49%), Positives = 431/663 (65%), Gaps = 44/663 (6%) Query: 13 MKYDDDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNR 72 M + + +A+AIR LS+DA++ NSGHPG+PMG AD+ L+T+ + DP+ P WPNR Sbjct: 2 MMDMELLQLLANAIRVLSIDAVQKANSGHPGMPMGAADIAYVLWTRFLRHDPKNPKWPNR 61 Query: 73 DRFVLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPL 132 DRFVLSAGHGSML Y+LL+L GY D++I+D+KNFR +GSKT GHPEYG G+E TTGPL Sbjct: 62 DRFVLSAGHGSMLLYSLLHLAGY-DLSIDDLKNFRQLGSKTPGHPEYGHTPGVETTTGPL 120 Query: 133 GQGIANAVGMAIAERKLREEF---GDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLS 189 GQG+ANAVGMA+AE+ L F G ++DHYTYVL GDG LMEGIS EA S AGHL L Sbjct: 121 GQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLG 180 Query: 190 KLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTLSVNGHDHHAITSTLRKAQLSDKP 249 LIV++D+N ISIDGP + D RF A GW+ + V+GHD AI + + +A+ S KP Sbjct: 181 NLIVIYDDNRISIDGPTEGWFTEDVKKRFEAYGWHVIEVDGHDVEAIDAAIEEAKASTKP 240 Query: 250 TMIACETVIGFGSPNRAGTNKVHGSALGQEEIKATRKALNWDLDPFFIPDDIMKKWRLAG 309 T+I +T+IG G+PN+ GT+KVHG+ LG EEI A +K L WD +PF +P+++ WR A Sbjct: 241 TLIIAKTIIGKGAPNKEGTHKVHGAPLGAEEIAAAKKELGWDYEPFEVPEEVYAHWRKAK 300 Query: 310 LRSSQTRADWQERLSSMKSSIRKEFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKS 369 R ++ A+W E+ + +ATRK+ Sbjct: 301 ERGAKAEAEWNEKFA------------------------------------GEKVATRKA 324 Query: 370 SELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAMAAAMN 429 S L + LPEL+GGSADL GSN TK K + D+SGRY+HYGVRE AMAA N Sbjct: 325 SGKALNALAKALPELVGGSADLAGSNNTKIKGSKDFAPEDYSGRYIHYGVREFAMAAIAN 384 Query: 430 GIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHL 489 G+ALH G P+ GTF+VFSDY+R AIRLA+LM + VI+V THDSIG+GEDGPTHQPVE L Sbjct: 385 GLALHGGFIPFGGTFLVFSDYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTHQPVEQL 444 Query: 490 AALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALG 549 A+LRAIP+L V+RPAD+ ET W+ AL+ K+ PS L L+RQNLP L + A G Sbjct: 445 ASLRAIPNLTVIRPADANETAAAWKYALERKDGPSALVLTRQNLPVL-ERTAQEEGVAKG 503 Query: 550 AYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQI 609 Y P V + ++GSE+ +A+EA + L + I RVVS+P ELF EQ +Y+ + Sbjct: 504 GYVLRDDP--DVILIATGSEVHLALEAADELEAEGIKVRVVSMPSTELFDEQDAAYKESV 561 Query: 610 IGSS-PIKIAIEAGLRQGWDAFIGSDGSFIGMQGFGASGSCDLLYQHFGINAIAIVDMVE 668 + ++ ++A+EAG+ GW ++G DG +G+ FGAS D L++ FG IV + Sbjct: 562 LPAAVTARVAVEAGVADGWYKYVGLDGKVLGIDTFGASAPADELFKEFGFTVENIVAAAK 621 Query: 669 RKL 671 L Sbjct: 622 ELL 624 >gnl|CDD|161779 TIGR00232, tktlase_bact, transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. Length = 653 Score = 771 bits (1992), Expect = 0.0 Identities = 322/661 (48%), Positives = 431/661 (65%), Gaps = 17/661 (2%) Query: 20 KKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSA 79 KK+A+AIR L++DAI+ SGHPG P+G A + L+T+ + F+P P W NRDRFVLS Sbjct: 1 KKLANAIRHLAVDAIQKAKSGHPGAPLGAAPIAEVLWTKFLKFNPTNPKWINRDRFVLSN 60 Query: 80 GHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANA 139 GHGSML Y+LL+L GY D++IED+K FR + SKT GHPE+G AG+EATTGPLGQGIANA Sbjct: 61 GHGSMLLYSLLHLTGY-DLSIEDLKQFRQLHSKTPGHPEFGHTAGVEATTGPLGQGIANA 119 Query: 140 VGMAIAERKLREEF---GDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWD 196 VGMAIA++ L F G ++DHYTYV VGDGCL EGIS E S AGHL L KLIVL+D Sbjct: 120 VGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYD 179 Query: 197 NNGISIDGPISLADSTDQYARFRASGWNTLSV-NGHDHHAITSTLRKAQLS-DKPTMIAC 254 +N ISIDG + + + D RF A GW L V +GHD AI + + +A+ S DKPT+I Sbjct: 180 SNRISIDGAVDGSFTEDVAKRFEAYGWEVLEVEDGHDLAAIDAAIEEAKASKDKPTLIEV 239 Query: 255 ETVIGFGSPNRAGTNKVHGSALGQEEIKATRKALNWDLDPFFIPDDIMKKWRLAGL-RSS 313 T IGFGSPN+AGT+ VHG+ LG E++K T+K L W+ +PF +P ++ ++ R + Sbjct: 240 TTTIGFGSPNKAGTHGVHGAPLGDEDVKLTKKNLGWNYNPFEVPQEVYDHFQKTVKERGA 299 Query: 314 QTRADWQERLSSMKS---SIRKEFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSS 370 + +W E ++ K + EF RR S LP +D +F+ +ATRK S Sbjct: 300 KAEQEWNELFAAYKKKYPELAAEFTRRLSGELPADWDKKL----PEFKAKLQALATRKYS 355 Query: 371 ELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAMAAAMNG 430 + VL + + LPEL+GGSADL SN TK + + G Y+HYGVRE AM A MNG Sbjct: 356 QNVLNAIANVLPELLGGSADLAPSNLTKWKGSGDL-HENPLGNYIHYGVREFAMGAIMNG 414 Query: 431 IALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHLA 490 IALH G PY GTF++F DY+RPAIRLA+LM + VI+V THDSIG+GEDGPTHQP+E LA Sbjct: 415 IALHGGFKPYGGTFLMFVDYARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTHQPIEQLA 474 Query: 491 ALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGA 550 +LRAIP+L V RP D ET W+ AL+ ++ P+ L LSRQNLP L + S G Sbjct: 475 SLRAIPNLSVWRPCDGNETAAAWKYALESQDGPTALILSRQNLPQL--EESSLEKVLKGG 532 Query: 551 YDYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQII 610 Y + + + ++GSE+ +AVEA + L++ NI RVVS+P F+LF +Q + YR ++ Sbjct: 533 YVLKDSKGPDIILIATGSEVSLAVEAAKKLAAENIKVRVVSMPSFDLFDKQDEEYRESVL 592 Query: 611 GSSPIKIAIEAGLRQGWDAFIGSDGSFIGMQGFGASGSCDLLYQHFGINAIAIVDMVERK 670 ++ ++A+EAG W + G G+ +GM FG S D L++ FG +V ++ Sbjct: 593 PANVTRLAVEAGAADEWYKYAGLVGAILGMDSFGESAPGDKLFEEFGFTVENVVAKAKKL 652 Query: 671 L 671 L Sbjct: 653 L 653 >gnl|CDD|183723 PRK12753, PRK12753, transketolase; Reviewed. Length = 663 Score = 752 bits (1944), Expect = 0.0 Identities = 307/658 (46%), Positives = 411/658 (62%), Gaps = 19/658 (2%) Query: 20 KKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSA 79 K +A+AIR LSMDA++ NSGHPG PMGMAD+ L+ + +P P W +RDRF+LS Sbjct: 5 KDLANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWRDFLKHNPTNPTWYDRDRFILSN 64 Query: 80 GHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANA 139 GH SML Y+LL+L GY D+ IE++KNFR + SKT GHPE G G+E TTGPLGQG+ANA Sbjct: 65 GHASMLLYSLLHLTGY-DLPIEELKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLANA 123 Query: 140 VGMAIAERKLREEF---GDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWD 196 VG+AIAER L +F G ++DHYTYV +GDGCLMEGIS E S AG LGL KLI +D Sbjct: 124 VGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYD 183 Query: 197 NNGISIDGPISLADSTDQYARFRASGWNTLS-VNGHDHHAITSTLRKAQL-SDKPTMIAC 254 +NGISIDG + D RF A W+ + ++GHD AI + +AQ DKP++I C Sbjct: 184 HNGISIDGETEGWFTDDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQSVKDKPSLIIC 243 Query: 255 ETVIGFGSPNRAGTNKVHGSALGQEEIKATRKALNWDLDPFFIPDDIMKKWRLAGLRSSQ 314 T+IGFGSPN+AG + HG+ LG+EE+ TR+ L W PF IP +I W A + + Sbjct: 244 RTIIGFGSPNKAGKEESHGAPLGEEEVALTRQKLGWHHPPFEIPKEIYAAWD-AREKGEK 302 Query: 315 TRADWQERLSSMKSS---IRKEFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSE 371 W E+ ++ K + + EF RR S LP ++ + + + IATRK+S+ Sbjct: 303 AEQAWNEKFAAYKKAYPELAAEFTRRMSGGLPKDWEKKTQKYINELQANPAKIATRKASQ 362 Query: 372 LVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAMAAAMNGI 431 LE LPEL+GGSADL SN T S K++ K D +G Y+HYGVRE M A NGI Sbjct: 363 NTLEAYGPLLPELLGGSADLAPSNLTIWSGSKSL-KEDPAGNYIHYGVREFGMTAIANGI 421 Query: 432 ALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHLAA 491 A H G PY+ TF++F +Y+R A R+A+LM R I V THDSIGLGEDGPTHQPVE LA+ Sbjct: 422 AHHGGFVPYTATFLMFVEYARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQPVEQLAS 481 Query: 492 LRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLP-FLRTQYESNNLCALGA 550 LR P+ RP D +E W++A++ N P+ L LSRQNL RT + N+ G Sbjct: 482 LRLTPNFSTWRPCDQVEAAVAWKLAIERHNGPTALILSRQNLAQQERTPEQVKNIAR-GG 540 Query: 551 Y---DYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRA 607 Y D P + + ++GSE++I ++A E L++ + RVVS+P ++F Q ++YR Sbjct: 541 YILKDSGGKP--DLILIATGSEVEITLQAAEKLTAEGRNVRVVSMPSTDIFDAQDEAYRE 598 Query: 608 QIIGSSPIK-IAIEAGLRQGWDAFIGSDGSFIGMQGFGASGSCDLLYQHFGINAIAIV 664 ++ S+ +A+EAG+ W ++G G+ IGM GFG S D L+ FG IV Sbjct: 599 SVLPSNVTARVAVEAGIADYWYKYVGLKGAIIGMTGFGESAPADKLFPFFGFTVENIV 656 >gnl|CDD|178387 PLN02790, PLN02790, transketolase. Length = 654 Score = 743 bits (1921), Expect = 0.0 Identities = 307/654 (46%), Positives = 406/654 (62%), Gaps = 20/654 (3%) Query: 26 IRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSML 85 IRFL++DA+ NSGHPGLPMG A + L+ + M ++P+ PYW NRDRFVLSAGHG ML Sbjct: 1 IRFLAIDAVNKANSGHPGLPMGCAPMGHVLYDEVMKYNPKNPYWFNRDRFVLSAGHGCML 60 Query: 86 YYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIA 145 YALL+L GY V +ED+K FR GS+T GHPE GIE TTGPLGQGIANAVG+A+A Sbjct: 61 QYALLHLAGYDSVQMEDLKQFRQWGSRTPGHPENFETPGIEVTTGPLGQGIANAVGLALA 120 Query: 146 ERKLREEF---GDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISI 202 E+ L F ++DHYTY ++GDGC MEGIS EA S AGH GL KLIVL+D+N ISI Sbjct: 121 EKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHISI 180 Query: 203 DGPISLADSTDQYARFRASGWNTLSVNG--HDHHAITSTLRKAQ-LSDKPTMIACETVIG 259 DG +A + D R+ A GW+T+ V D+ I + +++A+ ++DKPT+I T IG Sbjct: 181 DGDTEIAFTEDVDKRYEALGWHTIWVKNGNTDYDEIRAAIKEAKAVTDKPTLIKVTTTIG 240 Query: 260 FGSPNRAGTNKVHGSALGQEEIKATRKALNWDLDPFFIPDDIMKKWRLAGLRSSQTRADW 319 +GSPN+A + VHG+ALG++E+ ATRK L W +PF +P+D+ W + A+W Sbjct: 241 YGSPNKANSYSVHGAALGEKEVDATRKNLGWPYEPFHVPEDVKSHWSKHTKEGAALEAEW 300 Query: 320 QERLSSMKSSIR---KEFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSELVLEV 376 + + K E + S LP ++ A F P ATR S+ L Sbjct: 301 NAKFAEYKKKYPEEAAELKSLISGELPSGWEKAL----PTFTPEDPADATRNLSQKCLNA 356 Query: 377 VNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAMAAAMNGIALHK- 435 + LP LIGGSADL SN T K R + +GVREH M A NGIALH Sbjct: 357 LAKVLPGLIGGSADLASSNMTLLKDFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSS 416 Query: 436 GLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHLAALRAI 495 GL PY TF VF+DY R A+RL++L VI+V+THDSIGLGEDGPTHQP+EHLA+LRA+ Sbjct: 417 GLIPYCATFFVFTDYMRAAMRLSALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASLRAM 476 Query: 496 PDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAY---D 552 P++L+LRPAD ET ++VA+ + RP+VL+LSRQ +P L S G Y D Sbjct: 477 PNILMLRPADGNETAGAYKVAVTNRKRPTVLALSRQKVPNL--PGTSIEGVEKGGYVISD 534 Query: 553 YISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGS 612 S + + +GSEL+IA +A + L RVVS+ C+ELF EQSD Y+ ++ S Sbjct: 535 NSSGNKPDLILIGTGSELEIAAKAAKELRKEGKKVRVVSMVCWELFEEQSDEYKESVLPS 594 Query: 613 S-PIKIAIEAGLRQGWDAFIGSDGSFIGMQGFGASGSCDLLYQHFGINAIAIVD 665 S ++++EAG GW+ ++GS G IG+ FGAS +LY+ FG +V Sbjct: 595 SVTARVSVEAGSTFGWEKYVGSKGKVIGVDRFGASAPAGILYKEFGFTVENVVA 648 >gnl|CDD|173383 PTZ00089, PTZ00089, transketolase; Provisional. Length = 661 Score = 704 bits (1819), Expect = 0.0 Identities = 298/666 (44%), Positives = 414/666 (62%), Gaps = 32/666 (4%) Query: 20 KKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSA 79 +K A+ IR LS D ++ NSGHPG PMGMA + L+++ M ++P+ P W NRDRFVLS Sbjct: 7 EKCANEIRCLSADLVQKANSGHPGAPMGMAPIAHILWSEVMKYNPKDPRWINRDRFVLSN 66 Query: 80 GHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANA 139 GH S L Y++L+L GY D+++ED+KNFR +GS+T GHPE G+E TTGPLGQGIANA Sbjct: 67 GHASALLYSMLHLTGY-DLSMEDLKNFRQLGSRTPGHPERHITPGVEVTTGPLGQGIANA 125 Query: 140 VGMAIAERKL-----REEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVL 194 VG+AIAE+ L R + D+Y YV+ GDGCL EG+SQEA+S AGHLGL KLIVL Sbjct: 126 VGLAIAEKHLAAKFNRPGHP--IFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLIVL 183 Query: 195 WDNNGISIDGPISLADSTDQYARFRASGWNTLSV-NGH-DHHAITSTLRKAQLS-DKPTM 251 +D+N I+IDG L+ + D ++ A GW+ + V NG+ D + + +A+ S KP + Sbjct: 184 YDDNKITIDGNTDLSFTEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKSKGKPKL 243 Query: 252 IACETVIGFGSPNRAGTNKVHGSALGQEEIKATRKALNWDLDP---FFIPDDIMKKWRLA 308 I +T IG+GS AGT KVHG+ LG E+I ++ + LDP F + +++ + + Sbjct: 244 IIVKTTIGYGSSK-AGTEKVHGAPLGDEDIAQVKE--LFGLDPEKKFHVSEEVRQFFEQH 300 Query: 309 GLRSSQTRADWQERLSSMKS---SIRKEFERRFSDALPDCFDNAFINLKKKFEHSKPMIA 365 + + W++R + + + ERRF LP ++ L K + K IA Sbjct: 301 VEKKKENYEAWKKRFAKYTAAFPKEAQAIERRFKGELPPGWEKK---LPKYTTNDKA-IA 356 Query: 366 TRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAMA 425 TRK+SE VL + LPELIGGSADLT SN T+ + +K+ GRY+ +GVREHAM Sbjct: 357 TRKASENVLNPLFQILPELIGGSADLTPSNLTRPKEANDFTKASPEGRYIRFGVREHAMC 416 Query: 426 AAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDGPTHQP 485 A MNGIA H G P+ TF+ F Y+ A+RLA+L VI+V THDSIGLGEDGPTHQP Sbjct: 417 AIMNGIAAHGGFIPFGATFLNFYGYALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQP 476 Query: 486 VEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNL 545 VE LA LRA P+LLV+RPAD ET + +AL P++L LSRQN P L S Sbjct: 477 VETLALLRATPNLLVIRPADGTETSGAYALALANAKTPTILCLSRQNTPPLPGS--SIEG 534 Query: 546 CALGAYDYISTPNA-QVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDS 604 GAY + N+ Q+ + +SGSE+ + VEA + LS ++ RVVS+PC+ELF +QS+ Sbjct: 535 VLKGAYIVVDFTNSPQLILVASGSEVSLCVEAAKALSK-ELNVRVVSMPCWELFDQQSEE 593 Query: 605 YRAQIIGSSPI-KIAIEAGLRQGWDAFIGSDGSFIGMQGFGASGSCDLLYQHFGINAIAI 663 Y+ ++ S + +++EA + GW+ + +G+ GFGAS + LY+HFG + Sbjct: 594 YQQSVLPSGGVPVLSVEAYVSFGWEKYSHVH---VGISGFGASAPANALYKHFGFTVENV 650 Query: 664 VDMVER 669 V+ Sbjct: 651 VEKARA 656 >gnl|CDD|183724 PRK12754, PRK12754, transketolase; Reviewed. Length = 663 Score = 617 bits (1592), Expect = e-177 Identities = 299/658 (45%), Positives = 420/658 (63%), Gaps = 19/658 (2%) Query: 20 KKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSA 79 K++A+AIR LSMDA++ SGHPG PMGMAD+ L+ + +PQ P W +RDRFVLS Sbjct: 5 KELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLNHNPQNPSWADRDRFVLSN 64 Query: 80 GHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANA 139 GHGSML Y+LL+L GY D+ +E++KNFR + SKT GHPE G AG+E TTGPLGQGIANA Sbjct: 65 GHGSMLIYSLLHLTGY-DLPMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANA 123 Query: 140 VGMAIAERKLREEF---GDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWD 196 VGMAIAE+ L +F G ++DHYTY +GDGC+MEGIS E S AG L L KLI +D Sbjct: 124 VGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYD 183 Query: 197 NNGISIDGPISLADSTDQYARFRASGWNTL-SVNGHDHHAITSTLRKAQ-LSDKPTMIAC 254 +NGISIDG + + D RF A GW+ + ++GHD +I + +A+ ++DKP+++ C Sbjct: 184 DNGISIDGHVEGWFTDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARAVTDKPSLLMC 243 Query: 255 ETVIGFGSPNRAGTNKVHGSALGQEEIKATRKALNWDLDPFFIPDDIMKKWRLAGLRSSQ 314 +T+IGFGSPN+AGT+ HG+ LG EI TR+ L W PF IP +I +W A Sbjct: 244 KTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWD-AKEAGQA 302 Query: 315 TRADWQERLSSMKSSIRK---EFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSE 371 + W E+ ++ + + EF RR +P FD K + + IA+RK+S+ Sbjct: 303 KESAWNEKFAAYAKAYPQEAAEFTRRMKGEMPADFDAKAKEFIAKLQANPAKIASRKASQ 362 Query: 372 LVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAMAAAMNGI 431 +E LPE +GGSADL SN T S KAI++ D +G Y+HYGVRE M A NGI Sbjct: 363 NAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINE-DAAGNYIHYGVREFGMTAIANGI 421 Query: 432 ALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHLAA 491 ALH G PY+ TF++F +Y+R A+R+A+LM R + V THDSIGLGEDGPTHQPVE +A+ Sbjct: 422 ALHGGFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVAS 481 Query: 492 LRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFL-RTQYESNNLCALGA 550 LR P++ RP D +E+ W+ ++ ++ P+ L LSRQNL RT+ + N+ A G Sbjct: 482 LRVTPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQERTEEQLANI-ARGG 540 Query: 551 Y---DYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRA 607 Y D P ++ ++GSE+++AV A E L++ + RVVS+P + F +Q +YR Sbjct: 541 YVLKDCAGQP--ELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRE 598 Query: 608 QIIGSS-PIKIAIEAGLRQGWDAFIGSDGSFIGMQGFGASGSCDLLYQHFGINAIAIV 664 ++ + ++A+EAG+ W ++G +G+ +GM FG S +LL++ FG +V Sbjct: 599 SVLPKAVSARVAVEAGIADYWYKYVGLNGAIVGMTTFGESAPAELLFEEFGFTVDNVV 656 >gnl|CDD|129094 smart00861, Transket_pyr, Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. Length = 168 Score = 165 bits (420), Expect = 4e-41 Identities = 64/170 (37%), Positives = 87/170 (51%), Gaps = 4/170 (2%) Query: 365 ATRKSSELVLEVVNDCLPELIGGS-ADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHA 423 ATRK+ L + + PE + S AD+ GS G + +K GR + G+ E A Sbjct: 1 ATRKAFGEALAELAERDPERVVVSGADVGGSTGLDRGGVFPDTKGLGPGRVIDTGIAEQA 60 Query: 424 MAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVLTHDS-IGLGEDGPT 482 M G+AL GL P F F D ++ IR MG RV V+ HDS G+GEDGPT Sbjct: 61 MVGFAAGLALA-GLRPVVAIFFTFFDRAKDQIRSDGAMG-RVPVVVRHDSGGGVGEDGPT 118 Query: 483 HQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQN 532 H E A LRAIP L V+ P+D E + A++ + P V+ L R++ Sbjct: 119 HHSQEDEALLRAIPGLKVVAPSDPAEAKGLLRAAIRRDDGPPVIRLERKS 168 >gnl|CDD|183601 PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional. Length = 641 Score = 62.0 bits (151), Expect = 4e-10 Identities = 82/333 (24%), Positives = 135/333 (40%), Gaps = 92/333 (27%) Query: 16 DDDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRF 75 D + +++AD +R + A+ + GH G +G+ ++ AL VF+ +D+ Sbjct: 23 DAELEQLADELRAEVISAV-SETGGHLGSSLGVVELTVALHA---VFNTP------KDKL 72 Query: 76 VLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSK--TAGHPEYGSCAGIEATTGPLG 133 V GH Y L G +D FRT+ K +G + E+ P G Sbjct: 73 VWDVGHQC---YPHKILTGRRD-------RFRTLRQKGGLSGFTKRS-----ESEYDPFG 117 Query: 134 QG-----IANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGL 188 I+ A+G A A R L + GDV+ ++GDG L G++ EA++ AG Sbjct: 118 AAHSSTSISAALGFAKA-RALGQPDGDVV------AVIGDGSLTAGMAYEALNNAGAAD- 169 Query: 189 SKLIVLWDNNGISIDGPIS-----LAD--STDQYARFRASGWNTLS-------------- 227 +LIV+ ++N +SI P+ L+ S+D +AR RA Sbjct: 170 RRLIVILNDNEMSIAPPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARRAR 229 Query: 228 -----------------------VNGHDHHAITSTLRKAQ-LSDKPTMIACETVIGFG-S 262 ++GHD A+ S LR A+ +D P ++ T G G + Sbjct: 230 ELVTGMIGGGTLFEELGFTYVGPIDGHDMEALLSVLRAARARADGPVLVHVVTEKGRGYA 289 Query: 263 PNRAGTNKVHG-----SALGQEEIKATRKALNW 290 P A +K H G ++ K+ A ++ Sbjct: 290 PAEADEDKYHAVGKFDVVTGLQK-KSAPSAPSY 321 Score = 43.9 bits (104), Expect = 1e-04 Identities = 51/196 (26%), Positives = 72/196 (36%), Gaps = 33/196 (16%) Query: 410 FSGRYLHYGVRE-HAM--AAAMNGIALHKGLAPYSGTFM------VFSDYSRPAIRLASL 460 F R G+ E HA+ AA + L A YS TF+ + D +L Sbjct: 359 FPNRVFDVGIAEQHAVTFAAGLAAAGLKPFCAVYS-TFLQRGYDQLLHD--------VAL 409 Query: 461 MGIRVIHVLTHDSIGL-GEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKE 519 + V VL D GL G DG TH LA L +P++ V+ P D E + A Sbjct: 410 QNLPVRFVL--DRAGLVGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRTAAAH 467 Query: 520 KNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYIS-----TPNAQVTIFSSGSELKIAV 574 + P + R + A G I V I S G+ L + Sbjct: 468 DDGPIAVRFPRGEGV-------GVEIPAEGTILGIGKGRVPREGPDVAILSVGAHLHECL 520 Query: 575 EACEILSSRNISTRVV 590 +A ++L + IS V Sbjct: 521 DAADLLEAEGISVTVA 536 >gnl|CDD|180086 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional. Length = 580 Score = 54.7 bits (133), Expect = 7e-08 Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 20/135 (14%) Query: 136 IANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLW 195 I+ A+GMA A E D ++GDG L G++ EA++ AG L S LIV+ Sbjct: 123 ISAALGMAKARDLKGGE------DRKVVAVIGDGALTGGMAFEALNNAGDLK-SDLIVIL 175 Query: 196 DNNGISIDGPI-SLADSTDQY-ARFRAS------GWNTLS-VNGHDHHAITSTLRKAQLS 246 ++N +SI + +L++ Y AR R+S G+N + ++GHD A+ TL+ A+ Sbjct: 176 NDNEMSISPNVGALSN----YLARLRSSTLFEELGFNYIGPIDGHDLDALIETLKNAKDL 231 Query: 247 DKPTMIACETVIGFG 261 P ++ T G G Sbjct: 232 KGPVLLHVVTKKGKG 246 Score = 45.8 bits (110), Expect = 4e-05 Identities = 50/174 (28%), Positives = 77/174 (44%), Gaps = 29/174 (16%) Query: 421 EHAMA-AAMNGIALHKGLAP----YSGTFM------VFSDYSRPAIRLASLMGIRVIHVL 469 +HA+ AA G+A GL P YS TF+ V D +L + V + Sbjct: 331 QHAVTFAA--GLATE-GLKPVVAIYS-TFLQRAYDQVIHD--------VALQNLPVTFAI 378 Query: 470 THDSIGL-GEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSL 528 D GL G DGPTHQ L+ LR IP+++++ P+D E + AL + P + Sbjct: 379 --DRAGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTALAYDDGPIAIRY 436 Query: 529 SRQNLPFLRTQYESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSS 582 R N + + +G + + V I + G+ L A++A E L+S Sbjct: 437 PRGN--GVGVELPELEPLPIGKGEVLREGE-DVAILAFGTMLAEALKAAERLAS 487 >gnl|CDD|183431 PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional. Length = 581 Score = 48.5 bits (116), Expect = 5e-06 Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 19/137 (13%) Query: 136 IANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLW 195 IA A G+A A R L+ E G+++ ++GDG L G++ E ++ A L S LI++ Sbjct: 119 IALATGLAKA-RDLKGEKGNII------AVIGDGSLSGGLALEGLNNAAELK-SNLIIIV 170 Query: 196 DNNGISID---GPI-----SLADSTDQYAR--FRASGWNTLSV-NGHDHHAITSTLRKAQ 244 ++N +SI G + L D+ Q F+A G + V +G+D ++ ++ + Sbjct: 171 NDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEVK 230 Query: 245 LSDKPTMIACETVIGFG 261 D P ++ T+ G G Sbjct: 231 DIDHPIVLHIHTLKGKG 247 >gnl|CDD|129308 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP). Length = 617 Score = 47.1 bits (112), Expect = 1e-05 Identities = 49/191 (25%), Positives = 76/191 (39%), Gaps = 23/191 (12%) Query: 410 FSGRYLHYGVRE-HA--MAAAMNGIALHKGLAPYSGTFM------VFSDYSRPAIRLASL 460 F RY + E HA AA M +A YS TF+ V D +L L Sbjct: 350 FPDRYFDVAIAEQHAVTFAAGMAIEGYKPFVAIYS-TFLQRAYDQVVHDVCIQ--KLPVL 406 Query: 461 MGIRVIHVLTHDSIGL-GEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKE 519 I D G+ G DG THQ ++ LR IP+++++ P+D E + Sbjct: 407 FAI--------DRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYTGYHY 458 Query: 520 KNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACEI 579 + P + R N + E L +G + + ++ I G+ + A+E E Sbjct: 459 DDGPIAVRYPRGNAVGVELTPEPEKL-PIGKSEVLR-KGEKILILGFGTLVPEALEVAES 516 Query: 580 LSSRNISTRVV 590 L+ + I VV Sbjct: 517 LNEKGIEATVV 527 Score = 46.7 bits (111), Expect = 2e-05 Identities = 65/304 (21%), Positives = 117/304 (38%), Gaps = 75/304 (24%) Query: 17 DDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFV 76 D+ +K+ D +R ++++ + + GH +G ++ AL VF+ P +D+F+ Sbjct: 16 DELEKLCDELRRYLLESV-SASGGHLASGLGTVELTVALHY---VFN--TP----KDQFI 65 Query: 77 LSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSK--TAGHPEYGSCAGIEATTGPLGQ 134 GH + Y L G ++ F T+ K G P+ + G Sbjct: 66 WDVGHQA---YPHKLLTGRRE-------KFSTLRQKKGLHGFPKRSESEYDVFSAGHSST 115 Query: 135 GIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVL 194 I+ +G+A+A + + D T ++GDG + G++ EA++ AG L +++L Sbjct: 116 SISAGLGIAVA-AEKKGA------DRKTVCVIGDGAITAGMAFEALNHAGDLKTDMIVIL 168 Query: 195 WDNNGISIDGPI-----------------------------------SLADSTDQYAR-- 217 DN +SI + LA T++ + Sbjct: 169 NDNE-MSISENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGL 227 Query: 218 ------FRASGWNTLS-VNGHDHHAITSTLRKAQLSDKPTMIACETVIGFG-SPNRAGTN 269 F G+N + V+GHD + TL+ A+ P + +T G G P Sbjct: 228 VVPGTFFEELGFNYIGPVDGHDLLELIETLKNAKKLKGPVFLHIQTKKGKGYKPAEKDPI 287 Query: 270 KVHG 273 HG Sbjct: 288 GWHG 291 >gnl|CDD|178194 PLN02582, PLN02582, 1-deoxy-D-xylulose-5-phosphate synthase. Length = 677 Score = 44.9 bits (106), Expect = 7e-05 Identities = 82/314 (26%), Positives = 125/314 (39%), Gaps = 88/314 (28%) Query: 20 KKMADAIRFLSMDAIENVN--SGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVL 77 K++AD +R D I NV+ GH G +G+ ++ AL VF+ P +D+ + Sbjct: 52 KQLADELR---SDVIFNVSKTGGHLGSSLGVVELTVALH---YVFN--AP----QDKILW 99 Query: 78 SAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIA 137 GH S Y L G +D + G EY C G TG I+ Sbjct: 100 DVGHQS---YPHKILTGRRDKMHTMRQTNGLSGFTKRAESEY-DCFG----TGHSSTTIS 151 Query: 138 NAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDN 197 +GMA+ R L+ + +V+ ++GDG + G + EA++ AG+L +++L DN Sbjct: 152 AGLGMAVG-RDLKGKKNNVV------AVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDN 204 Query: 198 NGIS-----IDGPI--------------------------------------SLADSTDQ 214 +S +DGP LA D+ Sbjct: 205 KQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELAAKVDE 264 Query: 215 YARFRASG-WNTL----------SVNGHDHHAITSTLR--KAQLSDKPTMIACETVIGFG 261 YAR SG +TL V+GH+ + + LR K+ + P +I T G G Sbjct: 265 YARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILREVKSTKTTGPVLIHVVTEKGRG 324 Query: 262 SP--NRAGTNKVHG 273 P RA +K HG Sbjct: 325 YPYAERAA-DKYHG 337 Score = 36.8 bits (85), Expect = 0.020 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 7/126 (5%) Query: 410 FSGRYLHYGVRE-HAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHV 468 F R G+ E HA+ A G+A +GL P+ + F R ++ + ++ + V Sbjct: 396 FPTRCFDVGIAEQHAVTFAA-GLAC-EGLKPFCAIYSSF--LQRGYDQVVHDVDLQKLPV 451 Query: 469 -LTHDSIGL-GEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVL 526 D GL G DGPTH + + +P+++V+ P+D E A +RPS Sbjct: 452 RFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCF 511 Query: 527 SLSRQN 532 R N Sbjct: 512 RYPRGN 517 >gnl|CDD|177878 PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate synthase. Length = 641 Score = 41.2 bits (96), Expect = 0.001 Identities = 72/303 (23%), Positives = 127/303 (41%), Gaps = 64/303 (21%) Query: 1 MGHPVGGRNVVLMKYDDDYKKMADAIRFLSMDAIENVNS--GHPGLPMGMADVVTALFTQ 58 + HP+ +N+ + + K ++D +R D I NV+ GH G +G+ ++ AL Sbjct: 70 INHPMHMKNLSI----KELKVLSDELR---SDVIFNVSKTGGHLGSNLGVVELTVALH-- 120 Query: 59 CMVFD-PQCPYWPNRDRFVLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRT-IGSKTAGH 116 +F+ P D+ + GH S + L G TI + + H Sbjct: 121 -YIFNTPH-------DKILWDVGHQSYPHKILTGRRGKMK-TIRQTNGLSGYTKRRESEH 171 Query: 117 PEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGIS 176 +G+ G +TT ++ +GMA+ R L+ +++ ++GDG + G + Sbjct: 172 DSFGT--GHSSTT------LSAGLGMAVG-RDLKG------MNNSVVSVIGDGAMTAGQA 216 Query: 177 QEAISFAGHLGLSKLIVLWDNNGIS-----IDGP------ISLADSTDQYARFRASGWNT 225 EA++ AG+L + +++L DN +S +DGP +S A S Q ++ Sbjct: 217 YEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQSNCGMIRETSS 276 Query: 226 L-----------SVNGHDHHAITSTLRKAQLSDK--PTMIACETVIGFGSP--NRAGTNK 270 V+GH+ + S L + + P +I T G G P RA +K Sbjct: 277 TLFEELGFHYVGPVDGHNIDDLVSILETLKSTKTIGPVLIHVVTEKGRGYPYAERA-DDK 335 Query: 271 VHG 273 HG Sbjct: 336 YHG 338 Score = 40.5 bits (94), Expect = 0.002 Identities = 44/190 (23%), Positives = 76/190 (40%), Gaps = 5/190 (2%) Query: 402 MKAISKSDFSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLM 461 M + +S F R G+ E G+A +GL P+ + F R ++ + Sbjct: 389 MLNLFESRFPTRCFDVGIAEQHAVTFAAGLAC-EGLKPFCTIYSSF--MQRAYDQVVHDV 445 Query: 462 GIRVIHV-LTHDSIGL-GEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKE 519 ++ + V D GL G DGPTH + + +P+++V+ P+D E A Sbjct: 446 DLQKLPVRFAIDRAGLMGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVATAAAI 505 Query: 520 KNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACEI 579 +RPS R N + + + I +V + GS ++ +EA + Sbjct: 506 DDRPSCFRYHRGNGIGVSLPPGNKGVPLQIGRGRILRDGERVALLGYGSAVQRCLEAASM 565 Query: 580 LSSRNISTRV 589 LS R + V Sbjct: 566 LSERGLKITV 575 >gnl|CDD|180820 PRK07064, PRK07064, hypothetical protein; Provisional. Length = 544 Score = 40.7 bits (96), Expect = 0.001 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 18/73 (24%) Query: 108 TIGSKTAGH---PEYGSCAGIEATTGPLGQGIANAVGMAIAE--RKLREEFGDVLIDHYT 162 TI + T G+ P + A + A G +GQG+A A+G A+A RK T Sbjct: 380 TISNSTWGNRLLPIFEPRANVHALGGGIGQGLAMAIGAALAGPGRK-------------T 426 Query: 163 YVLVGDGCLMEGI 175 LVGDG LM + Sbjct: 427 VGLVGDGGLMLNL 439 >gnl|CDD|178002 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl-transferring). Length = 433 Score = 37.6 bits (87), Expect = 0.010 Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 8/131 (6%) Query: 132 LGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKL 191 +G+GI A G A + + RE + D T GDG G E ++ A L + Sbjct: 196 IGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLPIV 255 Query: 192 IVLWDNNGISIDGPISLADSTDQ--YARFRASGWNTLSVNGHD----HHAITSTLRKAQL 245 V+ +NN +I G L ++D + + A G + V+G D + +A+ Sbjct: 256 FVV-ENNLWAI-GMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARR 313 Query: 246 SDKPTMIACET 256 + PT++ CET Sbjct: 314 GEGPTLVECET 324 >gnl|CDD|162025 TIGR00759, aceE, pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity. Length = 885 Score = 37.1 bits (86), Expect = 0.017 Identities = 45/163 (27%), Positives = 68/163 (41%), Gaps = 17/163 (10%) Query: 76 VLSAGHGSMLYYALLYLLGYQDVTIEDIKNFR----TIGSKTAGHP----EYGSCAGIEA 127 V GH + YA +L G +T E + NFR G + HP ++ + Sbjct: 134 VFFQGHAAPGIYARAFLEG--RLTEEQLDNFRQEVQGDGLSSYPHPWLMPDFW-----QF 186 Query: 128 TTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLG 187 T +G G NA+ A + L D + +GDG + E S+ AI+FA Sbjct: 187 PTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREK 246 Query: 188 LSKLIVLWDNNGISIDGPISLADSTDQ--YARFRASGWNTLSV 228 L L + + N +DGP+ Q + FR +GWN + V Sbjct: 247 LDNLTFVINCNLQRLDGPVRGNGKIIQELESLFRGAGWNVIKV 289 Score = 30.5 bits (69), Expect = 1.5 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 3/69 (4%) Query: 224 NTLSVNGHDHHAITSTLRKAQ-LSDKPTMIACETVIGFGSPNRA-GTNKVHGS-ALGQEE 280 L+ GHD + + AQ +PT+I +T+ G+G + A N H L + Sbjct: 354 WALNRGGHDPRKVYAAYAAAQEHKGQPTVILAKTIKGYGMGDAAESRNTAHQVKKLEVDA 413 Query: 281 IKATRKALN 289 +K R Sbjct: 414 LKNFRDRFE 422 >gnl|CDD|132225 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. Length = 341 Score = 36.4 bits (85), Expect = 0.024 Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 15/132 (11%) Query: 131 PLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSK 190 P+G +A G+A A + E D+ GDG EG EA++FAG Sbjct: 123 PIGTQYLHAAGVAYALKLRGE-------DNVAVTYFGDGGTSEGDFYEALNFAGVFKAP- 174 Query: 191 LIVLWDNNGISIDGPISLADSTDQYARFRASGWNT--LSVNGHD----HHAITSTLRKAQ 244 ++ NN +I P S + A+ +A + + V+G+D + + +A+ Sbjct: 175 VVFFVQNNQWAISVPRSKQTAAPTLAQ-KAIAYGIPGVQVDGNDVLAVYAVTKEAVERAR 233 Query: 245 LSDKPTMIACET 256 PT+I T Sbjct: 234 SGGGPTLIEAVT 245 >gnl|CDD|132230 TIGR03186, AKGDH_not_PDH, alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component. Length = 889 Score = 32.5 bits (74), Expect = 0.34 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 6/104 (5%) Query: 129 TGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGL 188 TG +G G NA+ A R L+ + GDG + E S A+S A L Sbjct: 188 TGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERL 247 Query: 189 SKLIVLWDNNGISIDGPI----SLADSTDQYARFRASGWNTLSV 228 L+ + + N +DGP+ + D + ++F +GWN + V Sbjct: 248 DNLVFVINCNLQRLDGPVRGNGRIIDELE--SQFAGAGWNVIKV 289 >gnl|CDD|177870 PLN02225, PLN02225, 1-deoxy-D-xylulose-5-phosphate synthase. Length = 701 Score = 30.5 bits (68), Expect = 1.5 Identities = 32/136 (23%), Positives = 52/136 (38%), Gaps = 25/136 (18%) Query: 410 FSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVF-----------SDYSRPAIRLA 458 F R+ + G+ E G++ GL P+ F D R A+R Sbjct: 421 FPDRFFNVGMAEQHAVTFSAGLS-SGGLKPFCIIPSAFLQRAYDQVVHDVDRQRKAVRF- 478 Query: 459 SLMGIRVIHVLTHDSIGL-GEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVAL 517 V+T S GL G DGP +A + ++P+++ + PAD E + A Sbjct: 479 ---------VIT--SAGLVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVATAA 527 Query: 518 KEKNRPSVLSLSRQNL 533 +RP R ++ Sbjct: 528 YVTDRPVCFRFPRGSI 543 >gnl|CDD|165230 PHA02914, PHA02914, Immunoglobulin-like domain protein; Provisional. Length = 500 Score = 30.1 bits (67), Expect = 1.9 Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 1/59 (1%) Query: 180 ISFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTLSVNG-HDHHAIT 237 +A + +LW +NG+S G I+ A + A + + + D + Sbjct: 399 ACYAAQYDMQPFSILWKSNGVSFGGEIADALDEHEGAICDGCEASEIIIMDKRDKDTVK 457 >gnl|CDD|169719 PRK09212, PRK09212, pyruvate dehydrogenase subunit beta; Validated. Length = 327 Score = 28.9 bits (65), Expect = 4.0 Identities = 12/30 (40%), Positives = 19/30 (63%) Query: 561 VTIFSSGSELKIAVEACEILSSRNISTRVV 590 VTI + ++K+A+EA E+L IS V+ Sbjct: 204 VTIVTFSIQVKLALEAAELLEKEGISVEVI 233 >gnl|CDD|181051 PRK07586, PRK07586, hypothetical protein; Validated. Length = 514 Score = 29.0 bits (66), Expect = 4.1 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 21/70 (30%) Query: 111 SKTAGHPEYGSCAG------IEATTGPLGQGIANAVGMAIA--ERKLREEFGDVLIDHYT 162 S T+G + + AG + T G +GQG+ A G A+A +RK VL Sbjct: 360 SITSGRGFFPATAGAAPHDWLTLTGGAIGQGLPLATGAAVACPDRK-------VL----- 407 Query: 163 YVLVGDGCLM 172 L GDG M Sbjct: 408 -ALQGDGSAM 416 >gnl|CDD|178940 PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed. Length = 332 Score = 28.6 bits (65), Expect = 5.8 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 18/71 (25%) Query: 421 EHAMAAAMNGI------------ALHKGLAPYSGTFMVFSDYS---RPAIRLASLMGIRV 465 A+ + G A++ P+SG F++ S + LA+ G+RV Sbjct: 105 ARALDGCLAGEFDAICTAPVNKGAINDAGIPFSGHTEFFAELSGTTGVVMMLAT-EGLRV 163 Query: 466 IHVLTHDSIGL 476 V TH + L Sbjct: 164 ALVTTH--LPL 172 >gnl|CDD|183487 PRK12382, PRK12382, putative transporter; Provisional. Length = 392 Score = 28.5 bits (64), Expect = 6.3 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 8/38 (21%) Query: 636 SFIGMQGFGAS------GSCDLLYQHFGINAIAIVDMV 667 S+ GM +GA G LL+ HFG A+A+ MV Sbjct: 151 SWNGMAMYGALAAGAPLGL--LLHSHFGFAALALTTMV 186 >gnl|CDD|177906 PLN02265, PLN02265, probable phenylalanyl-tRNA synthetase beta chain. Length = 597 Score = 28.1 bits (63), Expect = 7.4 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 4/57 (7%) Query: 558 NAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSD-SYRAQIIGSS 613 N VT+FS K VE E++ ST P + + D SY IG S Sbjct: 273 NTMVTMFSEYCARKFEVEPVEVVYPDGKSTV---YPDLSVRTMEVDLSYINSSIGVS 326 >gnl|CDD|182370 PRK10308, PRK10308, 3-methyl-adenine DNA glycosylase II; Provisional. Length = 283 Score = 28.2 bits (63), Expect = 8.0 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 3/34 (8%) Query: 290 WDLDPFFIPDDIMKKWRLAGLRSSQTR---ADWQ 320 W F+PDD + K R G+ +Q R W+ Sbjct: 228 WQAKDVFLPDDYLIKQRFPGMTPAQIRRYAERWK 261 >gnl|CDD|161872 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase. Length = 861 Score = 28.1 bits (63), Expect = 8.2 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%) Query: 212 TDQYARF-RASGWNTLSVNGHDHHAI 236 D AR+ R G+N L + G DH I Sbjct: 59 QDIIARYKRMKGYNVLWLPGTDHAGI 84 >gnl|CDD|179380 PRK02190, PRK02190, agmatinase; Provisional. Length = 301 Score = 27.9 bits (63), Expect = 8.9 Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 5/29 (17%) Query: 62 FDPQCPYWPN-RDRFVLSAGHGSMLYYAL 89 FD W + R HG+M Y+A Sbjct: 142 FDAHTDTWADGGSRI----DHGTMFYHAP 166 >gnl|CDD|181825 PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed. Length = 891 Score = 27.8 bits (63), Expect = 9.5 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%) Query: 555 STPNAQVTIFSSGSELKIAVEACEILSSR-NISTRVVSVPCF-EL 597 +V + SG+ L+ +EA EIL+ ++ V SV F EL Sbjct: 724 KKGKPKVQLLGSGTILREVLEAAEILAEDYGVAADVWSVTSFNEL 768 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.320 0.136 0.406 Gapped Lambda K H 0.267 0.0607 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 11,140,165 Number of extensions: 740782 Number of successful extensions: 1440 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1386 Number of HSP's successfully gapped: 39 Length of query: 673 Length of database: 5,994,473 Length adjustment: 100 Effective length of query: 573 Effective length of database: 3,833,673 Effective search space: 2196694629 Effective search space used: 2196694629 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 60 (27.2 bits)