RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780655|ref|YP_003065068.1| transketolase [Candidatus
Liberibacter asiaticus str. psy62]
(673 letters)
>gnl|CDD|180309 PRK05899, PRK05899, transketolase; Reviewed.
Length = 624
Score = 971 bits (2513), Expect = 0.0
Identities = 326/663 (49%), Positives = 431/663 (65%), Gaps = 44/663 (6%)
Query: 13 MKYDDDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNR 72
M + + +A+AIR LS+DA++ NSGHPG+PMG AD+ L+T+ + DP+ P WPNR
Sbjct: 2 MMDMELLQLLANAIRVLSIDAVQKANSGHPGMPMGAADIAYVLWTRFLRHDPKNPKWPNR 61
Query: 73 DRFVLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPL 132
DRFVLSAGHGSML Y+LL+L GY D++I+D+KNFR +GSKT GHPEYG G+E TTGPL
Sbjct: 62 DRFVLSAGHGSMLLYSLLHLAGY-DLSIDDLKNFRQLGSKTPGHPEYGHTPGVETTTGPL 120
Query: 133 GQGIANAVGMAIAERKLREEF---GDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLS 189
GQG+ANAVGMA+AE+ L F G ++DHYTYVL GDG LMEGIS EA S AGHL L
Sbjct: 121 GQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLG 180
Query: 190 KLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTLSVNGHDHHAITSTLRKAQLSDKP 249
LIV++D+N ISIDGP + D RF A GW+ + V+GHD AI + + +A+ S KP
Sbjct: 181 NLIVIYDDNRISIDGPTEGWFTEDVKKRFEAYGWHVIEVDGHDVEAIDAAIEEAKASTKP 240
Query: 250 TMIACETVIGFGSPNRAGTNKVHGSALGQEEIKATRKALNWDLDPFFIPDDIMKKWRLAG 309
T+I +T+IG G+PN+ GT+KVHG+ LG EEI A +K L WD +PF +P+++ WR A
Sbjct: 241 TLIIAKTIIGKGAPNKEGTHKVHGAPLGAEEIAAAKKELGWDYEPFEVPEEVYAHWRKAK 300
Query: 310 LRSSQTRADWQERLSSMKSSIRKEFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKS 369
R ++ A+W E+ + +ATRK+
Sbjct: 301 ERGAKAEAEWNEKFA------------------------------------GEKVATRKA 324
Query: 370 SELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAMAAAMN 429
S L + LPEL+GGSADL GSN TK K + D+SGRY+HYGVRE AMAA N
Sbjct: 325 SGKALNALAKALPELVGGSADLAGSNNTKIKGSKDFAPEDYSGRYIHYGVREFAMAAIAN 384
Query: 430 GIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHL 489
G+ALH G P+ GTF+VFSDY+R AIRLA+LM + VI+V THDSIG+GEDGPTHQPVE L
Sbjct: 385 GLALHGGFIPFGGTFLVFSDYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTHQPVEQL 444
Query: 490 AALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALG 549
A+LRAIP+L V+RPAD+ ET W+ AL+ K+ PS L L+RQNLP L + A G
Sbjct: 445 ASLRAIPNLTVIRPADANETAAAWKYALERKDGPSALVLTRQNLPVL-ERTAQEEGVAKG 503
Query: 550 AYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQI 609
Y P V + ++GSE+ +A+EA + L + I RVVS+P ELF EQ +Y+ +
Sbjct: 504 GYVLRDDP--DVILIATGSEVHLALEAADELEAEGIKVRVVSMPSTELFDEQDAAYKESV 561
Query: 610 IGSS-PIKIAIEAGLRQGWDAFIGSDGSFIGMQGFGASGSCDLLYQHFGINAIAIVDMVE 668
+ ++ ++A+EAG+ GW ++G DG +G+ FGAS D L++ FG IV +
Sbjct: 562 LPAAVTARVAVEAGVADGWYKYVGLDGKVLGIDTFGASAPADELFKEFGFTVENIVAAAK 621
Query: 669 RKL 671
L
Sbjct: 622 ELL 624
>gnl|CDD|161779 TIGR00232, tktlase_bact, transketolase, bacterial and yeast. This
model is designed to capture orthologs of bacterial
transketolases. The group includes two from the yeast
Saccharomyces cerevisiae but excludes dihydroxyactetone
synthases (formaldehyde transketolases) from various
yeasts and the even more distant mammalian
transketolases. Among the family of thiamine
diphosphate-dependent enzymes that includes
transketolases, dihydroxyacetone synthases, pyruvate
dehydrogenase E1-beta subunits, and
deoxyxylulose-5-phosphate synthases, mammalian and
bacterial transketolases seem not to be orthologous.
Length = 653
Score = 771 bits (1992), Expect = 0.0
Identities = 322/661 (48%), Positives = 431/661 (65%), Gaps = 17/661 (2%)
Query: 20 KKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSA 79
KK+A+AIR L++DAI+ SGHPG P+G A + L+T+ + F+P P W NRDRFVLS
Sbjct: 1 KKLANAIRHLAVDAIQKAKSGHPGAPLGAAPIAEVLWTKFLKFNPTNPKWINRDRFVLSN 60
Query: 80 GHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANA 139
GHGSML Y+LL+L GY D++IED+K FR + SKT GHPE+G AG+EATTGPLGQGIANA
Sbjct: 61 GHGSMLLYSLLHLTGY-DLSIEDLKQFRQLHSKTPGHPEFGHTAGVEATTGPLGQGIANA 119
Query: 140 VGMAIAERKLREEF---GDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWD 196
VGMAIA++ L F G ++DHYTYV VGDGCL EGIS E S AGHL L KLIVL+D
Sbjct: 120 VGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYD 179
Query: 197 NNGISIDGPISLADSTDQYARFRASGWNTLSV-NGHDHHAITSTLRKAQLS-DKPTMIAC 254
+N ISIDG + + + D RF A GW L V +GHD AI + + +A+ S DKPT+I
Sbjct: 180 SNRISIDGAVDGSFTEDVAKRFEAYGWEVLEVEDGHDLAAIDAAIEEAKASKDKPTLIEV 239
Query: 255 ETVIGFGSPNRAGTNKVHGSALGQEEIKATRKALNWDLDPFFIPDDIMKKWRLAGL-RSS 313
T IGFGSPN+AGT+ VHG+ LG E++K T+K L W+ +PF +P ++ ++ R +
Sbjct: 240 TTTIGFGSPNKAGTHGVHGAPLGDEDVKLTKKNLGWNYNPFEVPQEVYDHFQKTVKERGA 299
Query: 314 QTRADWQERLSSMKS---SIRKEFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSS 370
+ +W E ++ K + EF RR S LP +D +F+ +ATRK S
Sbjct: 300 KAEQEWNELFAAYKKKYPELAAEFTRRLSGELPADWDKKL----PEFKAKLQALATRKYS 355
Query: 371 ELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAMAAAMNG 430
+ VL + + LPEL+GGSADL SN TK + + G Y+HYGVRE AM A MNG
Sbjct: 356 QNVLNAIANVLPELLGGSADLAPSNLTKWKGSGDL-HENPLGNYIHYGVREFAMGAIMNG 414
Query: 431 IALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHLA 490
IALH G PY GTF++F DY+RPAIRLA+LM + VI+V THDSIG+GEDGPTHQP+E LA
Sbjct: 415 IALHGGFKPYGGTFLMFVDYARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTHQPIEQLA 474
Query: 491 ALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGA 550
+LRAIP+L V RP D ET W+ AL+ ++ P+ L LSRQNLP L + S G
Sbjct: 475 SLRAIPNLSVWRPCDGNETAAAWKYALESQDGPTALILSRQNLPQL--EESSLEKVLKGG 532
Query: 551 YDYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQII 610
Y + + + ++GSE+ +AVEA + L++ NI RVVS+P F+LF +Q + YR ++
Sbjct: 533 YVLKDSKGPDIILIATGSEVSLAVEAAKKLAAENIKVRVVSMPSFDLFDKQDEEYRESVL 592
Query: 611 GSSPIKIAIEAGLRQGWDAFIGSDGSFIGMQGFGASGSCDLLYQHFGINAIAIVDMVERK 670
++ ++A+EAG W + G G+ +GM FG S D L++ FG +V ++
Sbjct: 593 PANVTRLAVEAGAADEWYKYAGLVGAILGMDSFGESAPGDKLFEEFGFTVENVVAKAKKL 652
Query: 671 L 671
L
Sbjct: 653 L 653
>gnl|CDD|183723 PRK12753, PRK12753, transketolase; Reviewed.
Length = 663
Score = 752 bits (1944), Expect = 0.0
Identities = 307/658 (46%), Positives = 411/658 (62%), Gaps = 19/658 (2%)
Query: 20 KKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSA 79
K +A+AIR LSMDA++ NSGHPG PMGMAD+ L+ + +P P W +RDRF+LS
Sbjct: 5 KDLANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWRDFLKHNPTNPTWYDRDRFILSN 64
Query: 80 GHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANA 139
GH SML Y+LL+L GY D+ IE++KNFR + SKT GHPE G G+E TTGPLGQG+ANA
Sbjct: 65 GHASMLLYSLLHLTGY-DLPIEELKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLANA 123
Query: 140 VGMAIAERKLREEF---GDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWD 196
VG+AIAER L +F G ++DHYTYV +GDGCLMEGIS E S AG LGL KLI +D
Sbjct: 124 VGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYD 183
Query: 197 NNGISIDGPISLADSTDQYARFRASGWNTLS-VNGHDHHAITSTLRKAQL-SDKPTMIAC 254
+NGISIDG + D RF A W+ + ++GHD AI + +AQ DKP++I C
Sbjct: 184 HNGISIDGETEGWFTDDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQSVKDKPSLIIC 243
Query: 255 ETVIGFGSPNRAGTNKVHGSALGQEEIKATRKALNWDLDPFFIPDDIMKKWRLAGLRSSQ 314
T+IGFGSPN+AG + HG+ LG+EE+ TR+ L W PF IP +I W A + +
Sbjct: 244 RTIIGFGSPNKAGKEESHGAPLGEEEVALTRQKLGWHHPPFEIPKEIYAAWD-AREKGEK 302
Query: 315 TRADWQERLSSMKSS---IRKEFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSE 371
W E+ ++ K + + EF RR S LP ++ + + + IATRK+S+
Sbjct: 303 AEQAWNEKFAAYKKAYPELAAEFTRRMSGGLPKDWEKKTQKYINELQANPAKIATRKASQ 362
Query: 372 LVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAMAAAMNGI 431
LE LPEL+GGSADL SN T S K++ K D +G Y+HYGVRE M A NGI
Sbjct: 363 NTLEAYGPLLPELLGGSADLAPSNLTIWSGSKSL-KEDPAGNYIHYGVREFGMTAIANGI 421
Query: 432 ALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHLAA 491
A H G PY+ TF++F +Y+R A R+A+LM R I V THDSIGLGEDGPTHQPVE LA+
Sbjct: 422 AHHGGFVPYTATFLMFVEYARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQPVEQLAS 481
Query: 492 LRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLP-FLRTQYESNNLCALGA 550
LR P+ RP D +E W++A++ N P+ L LSRQNL RT + N+ G
Sbjct: 482 LRLTPNFSTWRPCDQVEAAVAWKLAIERHNGPTALILSRQNLAQQERTPEQVKNIAR-GG 540
Query: 551 Y---DYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRA 607
Y D P + + ++GSE++I ++A E L++ + RVVS+P ++F Q ++YR
Sbjct: 541 YILKDSGGKP--DLILIATGSEVEITLQAAEKLTAEGRNVRVVSMPSTDIFDAQDEAYRE 598
Query: 608 QIIGSSPIK-IAIEAGLRQGWDAFIGSDGSFIGMQGFGASGSCDLLYQHFGINAIAIV 664
++ S+ +A+EAG+ W ++G G+ IGM GFG S D L+ FG IV
Sbjct: 599 SVLPSNVTARVAVEAGIADYWYKYVGLKGAIIGMTGFGESAPADKLFPFFGFTVENIV 656
>gnl|CDD|178387 PLN02790, PLN02790, transketolase.
Length = 654
Score = 743 bits (1921), Expect = 0.0
Identities = 307/654 (46%), Positives = 406/654 (62%), Gaps = 20/654 (3%)
Query: 26 IRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSAGHGSML 85
IRFL++DA+ NSGHPGLPMG A + L+ + M ++P+ PYW NRDRFVLSAGHG ML
Sbjct: 1 IRFLAIDAVNKANSGHPGLPMGCAPMGHVLYDEVMKYNPKNPYWFNRDRFVLSAGHGCML 60
Query: 86 YYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANAVGMAIA 145
YALL+L GY V +ED+K FR GS+T GHPE GIE TTGPLGQGIANAVG+A+A
Sbjct: 61 QYALLHLAGYDSVQMEDLKQFRQWGSRTPGHPENFETPGIEVTTGPLGQGIANAVGLALA 120
Query: 146 ERKLREEF---GDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDNNGISI 202
E+ L F ++DHYTY ++GDGC MEGIS EA S AGH GL KLIVL+D+N ISI
Sbjct: 121 EKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHISI 180
Query: 203 DGPISLADSTDQYARFRASGWNTLSVNG--HDHHAITSTLRKAQ-LSDKPTMIACETVIG 259
DG +A + D R+ A GW+T+ V D+ I + +++A+ ++DKPT+I T IG
Sbjct: 181 DGDTEIAFTEDVDKRYEALGWHTIWVKNGNTDYDEIRAAIKEAKAVTDKPTLIKVTTTIG 240
Query: 260 FGSPNRAGTNKVHGSALGQEEIKATRKALNWDLDPFFIPDDIMKKWRLAGLRSSQTRADW 319
+GSPN+A + VHG+ALG++E+ ATRK L W +PF +P+D+ W + A+W
Sbjct: 241 YGSPNKANSYSVHGAALGEKEVDATRKNLGWPYEPFHVPEDVKSHWSKHTKEGAALEAEW 300
Query: 320 QERLSSMKSSIR---KEFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSELVLEV 376
+ + K E + S LP ++ A F P ATR S+ L
Sbjct: 301 NAKFAEYKKKYPEEAAELKSLISGELPSGWEKAL----PTFTPEDPADATRNLSQKCLNA 356
Query: 377 VNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAMAAAMNGIALHK- 435
+ LP LIGGSADL SN T K R + +GVREH M A NGIALH
Sbjct: 357 LAKVLPGLIGGSADLASSNMTLLKDFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSS 416
Query: 436 GLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHLAALRAI 495
GL PY TF VF+DY R A+RL++L VI+V+THDSIGLGEDGPTHQP+EHLA+LRA+
Sbjct: 417 GLIPYCATFFVFTDYMRAAMRLSALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASLRAM 476
Query: 496 PDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNLCALGAY---D 552
P++L+LRPAD ET ++VA+ + RP+VL+LSRQ +P L S G Y D
Sbjct: 477 PNILMLRPADGNETAGAYKVAVTNRKRPTVLALSRQKVPNL--PGTSIEGVEKGGYVISD 534
Query: 553 YISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRAQIIGS 612
S + + +GSEL+IA +A + L RVVS+ C+ELF EQSD Y+ ++ S
Sbjct: 535 NSSGNKPDLILIGTGSELEIAAKAAKELRKEGKKVRVVSMVCWELFEEQSDEYKESVLPS 594
Query: 613 S-PIKIAIEAGLRQGWDAFIGSDGSFIGMQGFGASGSCDLLYQHFGINAIAIVD 665
S ++++EAG GW+ ++GS G IG+ FGAS +LY+ FG +V
Sbjct: 595 SVTARVSVEAGSTFGWEKYVGSKGKVIGVDRFGASAPAGILYKEFGFTVENVVA 648
>gnl|CDD|173383 PTZ00089, PTZ00089, transketolase; Provisional.
Length = 661
Score = 704 bits (1819), Expect = 0.0
Identities = 298/666 (44%), Positives = 414/666 (62%), Gaps = 32/666 (4%)
Query: 20 KKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSA 79
+K A+ IR LS D ++ NSGHPG PMGMA + L+++ M ++P+ P W NRDRFVLS
Sbjct: 7 EKCANEIRCLSADLVQKANSGHPGAPMGMAPIAHILWSEVMKYNPKDPRWINRDRFVLSN 66
Query: 80 GHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANA 139
GH S L Y++L+L GY D+++ED+KNFR +GS+T GHPE G+E TTGPLGQGIANA
Sbjct: 67 GHASALLYSMLHLTGY-DLSMEDLKNFRQLGSRTPGHPERHITPGVEVTTGPLGQGIANA 125
Query: 140 VGMAIAERKL-----REEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVL 194
VG+AIAE+ L R + D+Y YV+ GDGCL EG+SQEA+S AGHLGL KLIVL
Sbjct: 126 VGLAIAEKHLAAKFNRPGHP--IFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLIVL 183
Query: 195 WDNNGISIDGPISLADSTDQYARFRASGWNTLSV-NGH-DHHAITSTLRKAQLS-DKPTM 251
+D+N I+IDG L+ + D ++ A GW+ + V NG+ D + + +A+ S KP +
Sbjct: 184 YDDNKITIDGNTDLSFTEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKSKGKPKL 243
Query: 252 IACETVIGFGSPNRAGTNKVHGSALGQEEIKATRKALNWDLDP---FFIPDDIMKKWRLA 308
I +T IG+GS AGT KVHG+ LG E+I ++ + LDP F + +++ + +
Sbjct: 244 IIVKTTIGYGSSK-AGTEKVHGAPLGDEDIAQVKE--LFGLDPEKKFHVSEEVRQFFEQH 300
Query: 309 GLRSSQTRADWQERLSSMKS---SIRKEFERRFSDALPDCFDNAFINLKKKFEHSKPMIA 365
+ + W++R + + + ERRF LP ++ L K + K IA
Sbjct: 301 VEKKKENYEAWKKRFAKYTAAFPKEAQAIERRFKGELPPGWEKK---LPKYTTNDKA-IA 356
Query: 366 TRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAMA 425
TRK+SE VL + LPELIGGSADLT SN T+ + +K+ GRY+ +GVREHAM
Sbjct: 357 TRKASENVLNPLFQILPELIGGSADLTPSNLTRPKEANDFTKASPEGRYIRFGVREHAMC 416
Query: 426 AAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDGPTHQP 485
A MNGIA H G P+ TF+ F Y+ A+RLA+L VI+V THDSIGLGEDGPTHQP
Sbjct: 417 AIMNGIAAHGGFIPFGATFLNFYGYALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQP 476
Query: 486 VEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQYESNNL 545
VE LA LRA P+LLV+RPAD ET + +AL P++L LSRQN P L S
Sbjct: 477 VETLALLRATPNLLVIRPADGTETSGAYALALANAKTPTILCLSRQNTPPLPGS--SIEG 534
Query: 546 CALGAYDYISTPNA-QVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDS 604
GAY + N+ Q+ + +SGSE+ + VEA + LS ++ RVVS+PC+ELF +QS+
Sbjct: 535 VLKGAYIVVDFTNSPQLILVASGSEVSLCVEAAKALSK-ELNVRVVSMPCWELFDQQSEE 593
Query: 605 YRAQIIGSSPI-KIAIEAGLRQGWDAFIGSDGSFIGMQGFGASGSCDLLYQHFGINAIAI 663
Y+ ++ S + +++EA + GW+ + +G+ GFGAS + LY+HFG +
Sbjct: 594 YQQSVLPSGGVPVLSVEAYVSFGWEKYSHVH---VGISGFGASAPANALYKHFGFTVENV 650
Query: 664 VDMVER 669
V+
Sbjct: 651 VEKARA 656
>gnl|CDD|183724 PRK12754, PRK12754, transketolase; Reviewed.
Length = 663
Score = 617 bits (1592), Expect = e-177
Identities = 299/658 (45%), Positives = 420/658 (63%), Gaps = 19/658 (2%)
Query: 20 KKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVLSA 79
K++A+AIR LSMDA++ SGHPG PMGMAD+ L+ + +PQ P W +RDRFVLS
Sbjct: 5 KELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLNHNPQNPSWADRDRFVLSN 64
Query: 80 GHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIANA 139
GHGSML Y+LL+L GY D+ +E++KNFR + SKT GHPE G AG+E TTGPLGQGIANA
Sbjct: 65 GHGSMLIYSLLHLTGY-DLPMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANA 123
Query: 140 VGMAIAERKLREEF---GDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWD 196
VGMAIAE+ L +F G ++DHYTY +GDGC+MEGIS E S AG L L KLI +D
Sbjct: 124 VGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYD 183
Query: 197 NNGISIDGPISLADSTDQYARFRASGWNTL-SVNGHDHHAITSTLRKAQ-LSDKPTMIAC 254
+NGISIDG + + D RF A GW+ + ++GHD +I + +A+ ++DKP+++ C
Sbjct: 184 DNGISIDGHVEGWFTDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARAVTDKPSLLMC 243
Query: 255 ETVIGFGSPNRAGTNKVHGSALGQEEIKATRKALNWDLDPFFIPDDIMKKWRLAGLRSSQ 314
+T+IGFGSPN+AGT+ HG+ LG EI TR+ L W PF IP +I +W A
Sbjct: 244 KTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWD-AKEAGQA 302
Query: 315 TRADWQERLSSMKSSIRK---EFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSE 371
+ W E+ ++ + + EF RR +P FD K + + IA+RK+S+
Sbjct: 303 KESAWNEKFAAYAKAYPQEAAEFTRRMKGEMPADFDAKAKEFIAKLQANPAKIASRKASQ 362
Query: 372 LVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHAMAAAMNGI 431
+E LPE +GGSADL SN T S KAI++ D +G Y+HYGVRE M A NGI
Sbjct: 363 NAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINE-DAAGNYIHYGVREFGMTAIANGI 421
Query: 432 ALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDGPTHQPVEHLAA 491
ALH G PY+ TF++F +Y+R A+R+A+LM R + V THDSIGLGEDGPTHQPVE +A+
Sbjct: 422 ALHGGFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVAS 481
Query: 492 LRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFL-RTQYESNNLCALGA 550
LR P++ RP D +E+ W+ ++ ++ P+ L LSRQNL RT+ + N+ A G
Sbjct: 482 LRVTPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLAQQERTEEQLANI-ARGG 540
Query: 551 Y---DYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSDSYRA 607
Y D P ++ ++GSE+++AV A E L++ + RVVS+P + F +Q +YR
Sbjct: 541 YVLKDCAGQP--ELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRE 598
Query: 608 QIIGSS-PIKIAIEAGLRQGWDAFIGSDGSFIGMQGFGASGSCDLLYQHFGINAIAIV 664
++ + ++A+EAG+ W ++G +G+ +GM FG S +LL++ FG +V
Sbjct: 599 SVLPKAVSARVAVEAGIADYWYKYVGLNGAIVGMTTFGESAPAELLFEEFGFTVDNVV 656
>gnl|CDD|129094 smart00861, Transket_pyr, Transketolase, pyrimidine binding domain.
Transketolase (TK) catalyzes the reversible transfer of
a two-carbon ketol unit from xylulose 5-phosphate to an
aldose receptor, such as ribose 5-phosphate, to form
sedoheptulose 7-phosphate and glyceraldehyde 3-
phosphate. This enzyme, together with transaldolase,
provides a link between the glycolytic and
pentose-phosphate pathways. TK requires thiamine
pyrophosphate as a cofactor. In most sources where TK
has been purified, it is a homodimer of approximately 70
Kd subunits. TK sequences from a variety of eukaryotic
and prokaryotic sources show that the enzyme has been
evolutionarily conserved. In the peroxisomes of
methylotrophic yeast Hansenula polymorpha, there is a
highly related enzyme, dihydroxy-acetone synthase (DHAS)
(also known as formaldehyde transketolase), which
exhibits a very unusual specificity by including
formaldehyde amongst its substrates.
Length = 168
Score = 165 bits (420), Expect = 4e-41
Identities = 64/170 (37%), Positives = 87/170 (51%), Gaps = 4/170 (2%)
Query: 365 ATRKSSELVLEVVNDCLPELIGGS-ADLTGSNGTKTSQMKAISKSDFSGRYLHYGVREHA 423
ATRK+ L + + PE + S AD+ GS G + +K GR + G+ E A
Sbjct: 1 ATRKAFGEALAELAERDPERVVVSGADVGGSTGLDRGGVFPDTKGLGPGRVIDTGIAEQA 60
Query: 424 MAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVLTHDS-IGLGEDGPT 482
M G+AL GL P F F D ++ IR MG RV V+ HDS G+GEDGPT
Sbjct: 61 MVGFAAGLALA-GLRPVVAIFFTFFDRAKDQIRSDGAMG-RVPVVVRHDSGGGVGEDGPT 118
Query: 483 HQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQN 532
H E A LRAIP L V+ P+D E + A++ + P V+ L R++
Sbjct: 119 HHSQEDEALLRAIPGLKVVAPSDPAEAKGLLRAAIRRDDGPPVIRLERKS 168
>gnl|CDD|183601 PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate synthase;
Provisional.
Length = 641
Score = 62.0 bits (151), Expect = 4e-10
Identities = 82/333 (24%), Positives = 135/333 (40%), Gaps = 92/333 (27%)
Query: 16 DDDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRF 75
D + +++AD +R + A+ + GH G +G+ ++ AL VF+ +D+
Sbjct: 23 DAELEQLADELRAEVISAV-SETGGHLGSSLGVVELTVALHA---VFNTP------KDKL 72
Query: 76 VLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSK--TAGHPEYGSCAGIEATTGPLG 133
V GH Y L G +D FRT+ K +G + E+ P G
Sbjct: 73 VWDVGHQC---YPHKILTGRRD-------RFRTLRQKGGLSGFTKRS-----ESEYDPFG 117
Query: 134 QG-----IANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGL 188
I+ A+G A A R L + GDV+ ++GDG L G++ EA++ AG
Sbjct: 118 AAHSSTSISAALGFAKA-RALGQPDGDVV------AVIGDGSLTAGMAYEALNNAGAAD- 169
Query: 189 SKLIVLWDNNGISIDGPIS-----LAD--STDQYARFRASGWNTLS-------------- 227
+LIV+ ++N +SI P+ L+ S+D +AR RA
Sbjct: 170 RRLIVILNDNEMSIAPPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARRAR 229
Query: 228 -----------------------VNGHDHHAITSTLRKAQ-LSDKPTMIACETVIGFG-S 262
++GHD A+ S LR A+ +D P ++ T G G +
Sbjct: 230 ELVTGMIGGGTLFEELGFTYVGPIDGHDMEALLSVLRAARARADGPVLVHVVTEKGRGYA 289
Query: 263 PNRAGTNKVHG-----SALGQEEIKATRKALNW 290
P A +K H G ++ K+ A ++
Sbjct: 290 PAEADEDKYHAVGKFDVVTGLQK-KSAPSAPSY 321
Score = 43.9 bits (104), Expect = 1e-04
Identities = 51/196 (26%), Positives = 72/196 (36%), Gaps = 33/196 (16%)
Query: 410 FSGRYLHYGVRE-HAM--AAAMNGIALHKGLAPYSGTFM------VFSDYSRPAIRLASL 460
F R G+ E HA+ AA + L A YS TF+ + D +L
Sbjct: 359 FPNRVFDVGIAEQHAVTFAAGLAAAGLKPFCAVYS-TFLQRGYDQLLHD--------VAL 409
Query: 461 MGIRVIHVLTHDSIGL-GEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKE 519
+ V VL D GL G DG TH LA L +P++ V+ P D E + A
Sbjct: 410 QNLPVRFVL--DRAGLVGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRTAAAH 467
Query: 520 KNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYIS-----TPNAQVTIFSSGSELKIAV 574
+ P + R + A G I V I S G+ L +
Sbjct: 468 DDGPIAVRFPRGEGV-------GVEIPAEGTILGIGKGRVPREGPDVAILSVGAHLHECL 520
Query: 575 EACEILSSRNISTRVV 590
+A ++L + IS V
Sbjct: 521 DAADLLEAEGISVTVA 536
>gnl|CDD|180086 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase;
Provisional.
Length = 580
Score = 54.7 bits (133), Expect = 7e-08
Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 20/135 (14%)
Query: 136 IANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLW 195
I+ A+GMA A E D ++GDG L G++ EA++ AG L S LIV+
Sbjct: 123 ISAALGMAKARDLKGGE------DRKVVAVIGDGALTGGMAFEALNNAGDLK-SDLIVIL 175
Query: 196 DNNGISIDGPI-SLADSTDQY-ARFRAS------GWNTLS-VNGHDHHAITSTLRKAQLS 246
++N +SI + +L++ Y AR R+S G+N + ++GHD A+ TL+ A+
Sbjct: 176 NDNEMSISPNVGALSN----YLARLRSSTLFEELGFNYIGPIDGHDLDALIETLKNAKDL 231
Query: 247 DKPTMIACETVIGFG 261
P ++ T G G
Sbjct: 232 KGPVLLHVVTKKGKG 246
Score = 45.8 bits (110), Expect = 4e-05
Identities = 50/174 (28%), Positives = 77/174 (44%), Gaps = 29/174 (16%)
Query: 421 EHAMA-AAMNGIALHKGLAP----YSGTFM------VFSDYSRPAIRLASLMGIRVIHVL 469
+HA+ AA G+A GL P YS TF+ V D +L + V +
Sbjct: 331 QHAVTFAA--GLATE-GLKPVVAIYS-TFLQRAYDQVIHD--------VALQNLPVTFAI 378
Query: 470 THDSIGL-GEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSL 528
D GL G DGPTHQ L+ LR IP+++++ P+D E + AL + P +
Sbjct: 379 --DRAGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTALAYDDGPIAIRY 436
Query: 529 SRQNLPFLRTQYESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSS 582
R N + + +G + + V I + G+ L A++A E L+S
Sbjct: 437 PRGN--GVGVELPELEPLPIGKGEVLREGE-DVAILAFGTMLAEALKAAERLAS 487
>gnl|CDD|183431 PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate synthase;
Provisional.
Length = 581
Score = 48.5 bits (116), Expect = 5e-06
Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 19/137 (13%)
Query: 136 IANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLW 195
IA A G+A A R L+ E G+++ ++GDG L G++ E ++ A L S LI++
Sbjct: 119 IALATGLAKA-RDLKGEKGNII------AVIGDGSLSGGLALEGLNNAAELK-SNLIIIV 170
Query: 196 DNNGISID---GPI-----SLADSTDQYAR--FRASGWNTLSV-NGHDHHAITSTLRKAQ 244
++N +SI G + L D+ Q F+A G + V +G+D ++ ++ +
Sbjct: 171 NDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEVK 230
Query: 245 LSDKPTMIACETVIGFG 261
D P ++ T+ G G
Sbjct: 231 DIDHPIVLHIHTLKGKG 247
>gnl|CDD|129308 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate synthase. DXP
synthase is a thiamine diphosphate-dependent enzyme
related to transketolase and the pyruvate dehydrogenase
E1-beta subunit. By an acyloin condensation of pyruvate
with glyceraldehyde 3-phosphate, it produces
1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine
diphosphate (TPP), pyridoxal phosphate, and the
isoprenoid building block isopentenyl diphosphate (IPP).
Length = 617
Score = 47.1 bits (112), Expect = 1e-05
Identities = 49/191 (25%), Positives = 76/191 (39%), Gaps = 23/191 (12%)
Query: 410 FSGRYLHYGVRE-HA--MAAAMNGIALHKGLAPYSGTFM------VFSDYSRPAIRLASL 460
F RY + E HA AA M +A YS TF+ V D +L L
Sbjct: 350 FPDRYFDVAIAEQHAVTFAAGMAIEGYKPFVAIYS-TFLQRAYDQVVHDVCIQ--KLPVL 406
Query: 461 MGIRVIHVLTHDSIGL-GEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKE 519
I D G+ G DG THQ ++ LR IP+++++ P+D E +
Sbjct: 407 FAI--------DRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYTGYHY 458
Query: 520 KNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACEI 579
+ P + R N + E L +G + + ++ I G+ + A+E E
Sbjct: 459 DDGPIAVRYPRGNAVGVELTPEPEKL-PIGKSEVLR-KGEKILILGFGTLVPEALEVAES 516
Query: 580 LSSRNISTRVV 590
L+ + I VV
Sbjct: 517 LNEKGIEATVV 527
Score = 46.7 bits (111), Expect = 2e-05
Identities = 65/304 (21%), Positives = 117/304 (38%), Gaps = 75/304 (24%)
Query: 17 DDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFV 76
D+ +K+ D +R ++++ + + GH +G ++ AL VF+ P +D+F+
Sbjct: 16 DELEKLCDELRRYLLESV-SASGGHLASGLGTVELTVALHY---VFN--TP----KDQFI 65
Query: 77 LSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSK--TAGHPEYGSCAGIEATTGPLGQ 134
GH + Y L G ++ F T+ K G P+ + G
Sbjct: 66 WDVGHQA---YPHKLLTGRRE-------KFSTLRQKKGLHGFPKRSESEYDVFSAGHSST 115
Query: 135 GIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVL 194
I+ +G+A+A + + D T ++GDG + G++ EA++ AG L +++L
Sbjct: 116 SISAGLGIAVA-AEKKGA------DRKTVCVIGDGAITAGMAFEALNHAGDLKTDMIVIL 168
Query: 195 WDNNGISIDGPI-----------------------------------SLADSTDQYAR-- 217
DN +SI + LA T++ +
Sbjct: 169 NDNE-MSISENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGL 227
Query: 218 ------FRASGWNTLS-VNGHDHHAITSTLRKAQLSDKPTMIACETVIGFG-SPNRAGTN 269
F G+N + V+GHD + TL+ A+ P + +T G G P
Sbjct: 228 VVPGTFFEELGFNYIGPVDGHDLLELIETLKNAKKLKGPVFLHIQTKKGKGYKPAEKDPI 287
Query: 270 KVHG 273
HG
Sbjct: 288 GWHG 291
>gnl|CDD|178194 PLN02582, PLN02582, 1-deoxy-D-xylulose-5-phosphate synthase.
Length = 677
Score = 44.9 bits (106), Expect = 7e-05
Identities = 82/314 (26%), Positives = 125/314 (39%), Gaps = 88/314 (28%)
Query: 20 KKMADAIRFLSMDAIENVN--SGHPGLPMGMADVVTALFTQCMVFDPQCPYWPNRDRFVL 77
K++AD +R D I NV+ GH G +G+ ++ AL VF+ P +D+ +
Sbjct: 52 KQLADELR---SDVIFNVSKTGGHLGSSLGVVELTVALH---YVFN--AP----QDKILW 99
Query: 78 SAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYGSCAGIEATTGPLGQGIA 137
GH S Y L G +D + G EY C G TG I+
Sbjct: 100 DVGHQS---YPHKILTGRRDKMHTMRQTNGLSGFTKRAESEY-DCFG----TGHSSTTIS 151
Query: 138 NAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKLIVLWDN 197
+GMA+ R L+ + +V+ ++GDG + G + EA++ AG+L +++L DN
Sbjct: 152 AGLGMAVG-RDLKGKKNNVV------AVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDN 204
Query: 198 NGIS-----IDGPI--------------------------------------SLADSTDQ 214
+S +DGP LA D+
Sbjct: 205 KQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELAAKVDE 264
Query: 215 YARFRASG-WNTL----------SVNGHDHHAITSTLR--KAQLSDKPTMIACETVIGFG 261
YAR SG +TL V+GH+ + + LR K+ + P +I T G G
Sbjct: 265 YARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILREVKSTKTTGPVLIHVVTEKGRG 324
Query: 262 SP--NRAGTNKVHG 273
P RA +K HG
Sbjct: 325 YPYAERAA-DKYHG 337
Score = 36.8 bits (85), Expect = 0.020
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 7/126 (5%)
Query: 410 FSGRYLHYGVRE-HAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHV 468
F R G+ E HA+ A G+A +GL P+ + F R ++ + ++ + V
Sbjct: 396 FPTRCFDVGIAEQHAVTFAA-GLAC-EGLKPFCAIYSSF--LQRGYDQVVHDVDLQKLPV 451
Query: 469 -LTHDSIGL-GEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVL 526
D GL G DGPTH + + +P+++V+ P+D E A +RPS
Sbjct: 452 RFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCF 511
Query: 527 SLSRQN 532
R N
Sbjct: 512 RYPRGN 517
>gnl|CDD|177878 PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate synthase.
Length = 641
Score = 41.2 bits (96), Expect = 0.001
Identities = 72/303 (23%), Positives = 127/303 (41%), Gaps = 64/303 (21%)
Query: 1 MGHPVGGRNVVLMKYDDDYKKMADAIRFLSMDAIENVNS--GHPGLPMGMADVVTALFTQ 58
+ HP+ +N+ + + K ++D +R D I NV+ GH G +G+ ++ AL
Sbjct: 70 INHPMHMKNLSI----KELKVLSDELR---SDVIFNVSKTGGHLGSNLGVVELTVALH-- 120
Query: 59 CMVFD-PQCPYWPNRDRFVLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRT-IGSKTAGH 116
+F+ P D+ + GH S + L G TI + + H
Sbjct: 121 -YIFNTPH-------DKILWDVGHQSYPHKILTGRRGKMK-TIRQTNGLSGYTKRRESEH 171
Query: 117 PEYGSCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGIS 176
+G+ G +TT ++ +GMA+ R L+ +++ ++GDG + G +
Sbjct: 172 DSFGT--GHSSTT------LSAGLGMAVG-RDLKG------MNNSVVSVIGDGAMTAGQA 216
Query: 177 QEAISFAGHLGLSKLIVLWDNNGIS-----IDGP------ISLADSTDQYARFRASGWNT 225
EA++ AG+L + +++L DN +S +DGP +S A S Q ++
Sbjct: 217 YEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQSNCGMIRETSS 276
Query: 226 L-----------SVNGHDHHAITSTLRKAQLSDK--PTMIACETVIGFGSP--NRAGTNK 270
V+GH+ + S L + + P +I T G G P RA +K
Sbjct: 277 TLFEELGFHYVGPVDGHNIDDLVSILETLKSTKTIGPVLIHVVTEKGRGYPYAERA-DDK 335
Query: 271 VHG 273
HG
Sbjct: 336 YHG 338
Score = 40.5 bits (94), Expect = 0.002
Identities = 44/190 (23%), Positives = 76/190 (40%), Gaps = 5/190 (2%)
Query: 402 MKAISKSDFSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLM 461
M + +S F R G+ E G+A +GL P+ + F R ++ +
Sbjct: 389 MLNLFESRFPTRCFDVGIAEQHAVTFAAGLAC-EGLKPFCTIYSSF--MQRAYDQVVHDV 445
Query: 462 GIRVIHV-LTHDSIGL-GEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKE 519
++ + V D GL G DGPTH + + +P+++V+ P+D E A
Sbjct: 446 DLQKLPVRFAIDRAGLMGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVATAAAI 505
Query: 520 KNRPSVLSLSRQNLPFLRTQYESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACEI 579
+RPS R N + + + I +V + GS ++ +EA +
Sbjct: 506 DDRPSCFRYHRGNGIGVSLPPGNKGVPLQIGRGRILRDGERVALLGYGSAVQRCLEAASM 565
Query: 580 LSSRNISTRV 589
LS R + V
Sbjct: 566 LSERGLKITV 575
>gnl|CDD|180820 PRK07064, PRK07064, hypothetical protein; Provisional.
Length = 544
Score = 40.7 bits (96), Expect = 0.001
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 18/73 (24%)
Query: 108 TIGSKTAGH---PEYGSCAGIEATTGPLGQGIANAVGMAIAE--RKLREEFGDVLIDHYT 162
TI + T G+ P + A + A G +GQG+A A+G A+A RK T
Sbjct: 380 TISNSTWGNRLLPIFEPRANVHALGGGIGQGLAMAIGAALAGPGRK-------------T 426
Query: 163 YVLVGDGCLMEGI 175
LVGDG LM +
Sbjct: 427 VGLVGDGGLMLNL 439
>gnl|CDD|178002 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl-transferring).
Length = 433
Score = 37.6 bits (87), Expect = 0.010
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 8/131 (6%)
Query: 132 LGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSKL 191
+G+GI A G A + + RE + D T GDG G E ++ A L +
Sbjct: 196 IGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLPIV 255
Query: 192 IVLWDNNGISIDGPISLADSTDQ--YARFRASGWNTLSVNGHD----HHAITSTLRKAQL 245
V+ +NN +I G L ++D + + A G + V+G D + +A+
Sbjct: 256 FVV-ENNLWAI-GMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARR 313
Query: 246 SDKPTMIACET 256
+ PT++ CET
Sbjct: 314 GEGPTLVECET 324
>gnl|CDD|162025 TIGR00759, aceE, pyruvate dehydrogenase E1 component, homodimeric
type. WARNING: This family is classified as subfamily
rather than equivalog because it includes a
counterexample from Pseudomonas putida, MdeB, that is
active as an E1 component of an alpha-ketoglutarate
dehydrogenase complex rather than a pyruvate dehydrogase
complex. The second pyruvate dehydrogenase complex E1
protein from Alcaligenes eutrophus, PdhE, complements an
aceE mutant of E. coli but is not part of a pyruvate
dehydrogenase complex operon, is more similar to the
Pseudomonas putida MdeB than to E. coli AceE, and may
have also have a different primary specificity.
Length = 885
Score = 37.1 bits (86), Expect = 0.017
Identities = 45/163 (27%), Positives = 68/163 (41%), Gaps = 17/163 (10%)
Query: 76 VLSAGHGSMLYYALLYLLGYQDVTIEDIKNFR----TIGSKTAGHP----EYGSCAGIEA 127
V GH + YA +L G +T E + NFR G + HP ++ +
Sbjct: 134 VFFQGHAAPGIYARAFLEG--RLTEEQLDNFRQEVQGDGLSSYPHPWLMPDFW-----QF 186
Query: 128 TTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLG 187
T +G G NA+ A + L D + +GDG + E S+ AI+FA
Sbjct: 187 PTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREK 246
Query: 188 LSKLIVLWDNNGISIDGPISLADSTDQ--YARFRASGWNTLSV 228
L L + + N +DGP+ Q + FR +GWN + V
Sbjct: 247 LDNLTFVINCNLQRLDGPVRGNGKIIQELESLFRGAGWNVIKV 289
Score = 30.5 bits (69), Expect = 1.5
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 224 NTLSVNGHDHHAITSTLRKAQ-LSDKPTMIACETVIGFGSPNRA-GTNKVHGS-ALGQEE 280
L+ GHD + + AQ +PT+I +T+ G+G + A N H L +
Sbjct: 354 WALNRGGHDPRKVYAAYAAAQEHKGQPTVILAKTIKGYGMGDAAESRNTAHQVKKLEVDA 413
Query: 281 IKATRKALN 289
+K R
Sbjct: 414 LKNFRDRFE 422
>gnl|CDD|132225 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component,
alpha subunit. Members of this protein family are the
alpha subunit of the E1 component of pyruvate
dehydrogenase (PDH). This model represents one branch of
a larger family that E1-alpha proteins from
2-oxoisovalerate dehydrogenase, acetoin dehydrogenase,
another PDH clade, etc.
Length = 341
Score = 36.4 bits (85), Expect = 0.024
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 15/132 (11%)
Query: 131 PLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGLSK 190
P+G +A G+A A + E D+ GDG EG EA++FAG
Sbjct: 123 PIGTQYLHAAGVAYALKLRGE-------DNVAVTYFGDGGTSEGDFYEALNFAGVFKAP- 174
Query: 191 LIVLWDNNGISIDGPISLADSTDQYARFRASGWNT--LSVNGHD----HHAITSTLRKAQ 244
++ NN +I P S + A+ +A + + V+G+D + + +A+
Sbjct: 175 VVFFVQNNQWAISVPRSKQTAAPTLAQ-KAIAYGIPGVQVDGNDVLAVYAVTKEAVERAR 233
Query: 245 LSDKPTMIACET 256
PT+I T
Sbjct: 234 SGGGPTLIEAVT 245
>gnl|CDD|132230 TIGR03186, AKGDH_not_PDH, alpha-ketoglutarate dehydrogenase.
Several bacterial species have a paralog to homodimeric
form of the pyruvate dehydrogenase E1 component (see
model TIGR00759), often encoded next to L-methionine
gamma-lyase gene (mdeA). The member from a strain of
Pseudomonas putida was shown to act on
alpha-ketobutyrate, which is produced by MdeA.This model
serves as an exception model to TIGR00759, as other
proteins hitting TIGR00759 should be identified as the
pyruvate dehydrogenase E1 component.
Length = 889
Score = 32.5 bits (74), Expect = 0.34
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Query: 129 TGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAISFAGHLGL 188
TG +G G NA+ A R L+ + GDG + E S A+S A L
Sbjct: 188 TGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERL 247
Query: 189 SKLIVLWDNNGISIDGPI----SLADSTDQYARFRASGWNTLSV 228
L+ + + N +DGP+ + D + ++F +GWN + V
Sbjct: 248 DNLVFVINCNLQRLDGPVRGNGRIIDELE--SQFAGAGWNVIKV 289
>gnl|CDD|177870 PLN02225, PLN02225, 1-deoxy-D-xylulose-5-phosphate synthase.
Length = 701
Score = 30.5 bits (68), Expect = 1.5
Identities = 32/136 (23%), Positives = 52/136 (38%), Gaps = 25/136 (18%)
Query: 410 FSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVF-----------SDYSRPAIRLA 458
F R+ + G+ E G++ GL P+ F D R A+R
Sbjct: 421 FPDRFFNVGMAEQHAVTFSAGLS-SGGLKPFCIIPSAFLQRAYDQVVHDVDRQRKAVRF- 478
Query: 459 SLMGIRVIHVLTHDSIGL-GEDGPTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVAL 517
V+T S GL G DGP +A + ++P+++ + PAD E + A
Sbjct: 479 ---------VIT--SAGLVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVATAA 527
Query: 518 KEKNRPSVLSLSRQNL 533
+RP R ++
Sbjct: 528 YVTDRPVCFRFPRGSI 543
>gnl|CDD|165230 PHA02914, PHA02914, Immunoglobulin-like domain protein;
Provisional.
Length = 500
Score = 30.1 bits (67), Expect = 1.9
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 180 ISFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTLSVNG-HDHHAIT 237
+A + +LW +NG+S G I+ A + A + + + D +
Sbjct: 399 ACYAAQYDMQPFSILWKSNGVSFGGEIADALDEHEGAICDGCEASEIIIMDKRDKDTVK 457
>gnl|CDD|169719 PRK09212, PRK09212, pyruvate dehydrogenase subunit beta; Validated.
Length = 327
Score = 28.9 bits (65), Expect = 4.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 561 VTIFSSGSELKIAVEACEILSSRNISTRVV 590
VTI + ++K+A+EA E+L IS V+
Sbjct: 204 VTIVTFSIQVKLALEAAELLEKEGISVEVI 233
>gnl|CDD|181051 PRK07586, PRK07586, hypothetical protein; Validated.
Length = 514
Score = 29.0 bits (66), Expect = 4.1
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 21/70 (30%)
Query: 111 SKTAGHPEYGSCAG------IEATTGPLGQGIANAVGMAIA--ERKLREEFGDVLIDHYT 162
S T+G + + AG + T G +GQG+ A G A+A +RK VL
Sbjct: 360 SITSGRGFFPATAGAAPHDWLTLTGGAIGQGLPLATGAAVACPDRK-------VL----- 407
Query: 163 YVLVGDGCLM 172
L GDG M
Sbjct: 408 -ALQGDGSAM 416
>gnl|CDD|178940 PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase;
Reviewed.
Length = 332
Score = 28.6 bits (65), Expect = 5.8
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 18/71 (25%)
Query: 421 EHAMAAAMNGI------------ALHKGLAPYSGTFMVFSDYS---RPAIRLASLMGIRV 465
A+ + G A++ P+SG F++ S + LA+ G+RV
Sbjct: 105 ARALDGCLAGEFDAICTAPVNKGAINDAGIPFSGHTEFFAELSGTTGVVMMLAT-EGLRV 163
Query: 466 IHVLTHDSIGL 476
V TH + L
Sbjct: 164 ALVTTH--LPL 172
>gnl|CDD|183487 PRK12382, PRK12382, putative transporter; Provisional.
Length = 392
Score = 28.5 bits (64), Expect = 6.3
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 8/38 (21%)
Query: 636 SFIGMQGFGAS------GSCDLLYQHFGINAIAIVDMV 667
S+ GM +GA G LL+ HFG A+A+ MV
Sbjct: 151 SWNGMAMYGALAAGAPLGL--LLHSHFGFAALALTTMV 186
>gnl|CDD|177906 PLN02265, PLN02265, probable phenylalanyl-tRNA synthetase beta
chain.
Length = 597
Score = 28.1 bits (63), Expect = 7.4
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 558 NAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFEQSD-SYRAQIIGSS 613
N VT+FS K VE E++ ST P + + D SY IG S
Sbjct: 273 NTMVTMFSEYCARKFEVEPVEVVYPDGKSTV---YPDLSVRTMEVDLSYINSSIGVS 326
>gnl|CDD|182370 PRK10308, PRK10308, 3-methyl-adenine DNA glycosylase II;
Provisional.
Length = 283
Score = 28.2 bits (63), Expect = 8.0
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 290 WDLDPFFIPDDIMKKWRLAGLRSSQTR---ADWQ 320
W F+PDD + K R G+ +Q R W+
Sbjct: 228 WQAKDVFLPDDYLIKQRFPGMTPAQIRRYAERWK 261
>gnl|CDD|161872 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA synthetase
(ValS) is a class I amino acyl-tRNA ligase and is
particularly closely related to the isoleucyl tRNA
synthetase.
Length = 861
Score = 28.1 bits (63), Expect = 8.2
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 212 TDQYARF-RASGWNTLSVNGHDHHAI 236
D AR+ R G+N L + G DH I
Sbjct: 59 QDIIARYKRMKGYNVLWLPGTDHAGI 84
>gnl|CDD|179380 PRK02190, PRK02190, agmatinase; Provisional.
Length = 301
Score = 27.9 bits (63), Expect = 8.9
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 5/29 (17%)
Query: 62 FDPQCPYWPN-RDRFVLSAGHGSMLYYAL 89
FD W + R HG+M Y+A
Sbjct: 142 FDAHTDTWADGGSRI----DHGTMFYHAP 166
>gnl|CDD|181825 PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed.
Length = 891
Score = 27.8 bits (63), Expect = 9.5
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 555 STPNAQVTIFSSGSELKIAVEACEILSSR-NISTRVVSVPCF-EL 597
+V + SG+ L+ +EA EIL+ ++ V SV F EL
Sbjct: 724 KKGKPKVQLLGSGTILREVLEAAEILAEDYGVAADVWSVTSFNEL 768
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.320 0.136 0.406
Gapped
Lambda K H
0.267 0.0607 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 11,140,165
Number of extensions: 740782
Number of successful extensions: 1440
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1386
Number of HSP's successfully gapped: 39
Length of query: 673
Length of database: 5,994,473
Length adjustment: 100
Effective length of query: 573
Effective length of database: 3,833,673
Effective search space: 2196694629
Effective search space used: 2196694629
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.2 bits)