BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780655|ref|YP_003065068.1| transketolase [Candidatus Liberibacter asiaticus str. psy62] (673 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780655|ref|YP_003065068.1| transketolase [Candidatus Liberibacter asiaticus str. psy62] Length = 673 Score = 1398 bits (3618), Expect = 0.0, Method: Compositional matrix adjust. Identities = 673/673 (100%), Positives = 673/673 (100%) Query: 1 MGHPVGGRNVVLMKYDDDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCM 60 MGHPVGGRNVVLMKYDDDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCM Sbjct: 1 MGHPVGGRNVVLMKYDDDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCM 60 Query: 61 VFDPQCPYWPNRDRFVLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYG 120 VFDPQCPYWPNRDRFVLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYG Sbjct: 61 VFDPQCPYWPNRDRFVLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYG 120 Query: 121 SCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAI 180 SCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAI Sbjct: 121 SCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAI 180 Query: 181 SFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTLSVNGHDHHAITSTL 240 SFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTLSVNGHDHHAITSTL Sbjct: 181 SFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTLSVNGHDHHAITSTL 240 Query: 241 RKAQLSDKPTMIACETVIGFGSPNRAGTNKVHGSALGQEEIKATRKALNWDLDPFFIPDD 300 RKAQLSDKPTMIACETVIGFGSPNRAGTNKVHGSALGQEEIKATRKALNWDLDPFFIPDD Sbjct: 241 RKAQLSDKPTMIACETVIGFGSPNRAGTNKVHGSALGQEEIKATRKALNWDLDPFFIPDD 300 Query: 301 IMKKWRLAGLRSSQTRADWQERLSSMKSSIRKEFERRFSDALPDCFDNAFINLKKKFEHS 360 IMKKWRLAGLRSSQTRADWQERLSSMKSSIRKEFERRFSDALPDCFDNAFINLKKKFEHS Sbjct: 301 IMKKWRLAGLRSSQTRADWQERLSSMKSSIRKEFERRFSDALPDCFDNAFINLKKKFEHS 360 Query: 361 KPMIATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVR 420 KPMIATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVR Sbjct: 361 KPMIATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVR 420 Query: 421 EHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDG 480 EHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDG Sbjct: 421 EHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDG 480 Query: 481 PTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQY 540 PTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQY Sbjct: 481 PTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQY 540 Query: 541 ESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFE 600 ESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFE Sbjct: 541 ESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFE 600 Query: 601 QSDSYRAQIIGSSPIKIAIEAGLRQGWDAFIGSDGSFIGMQGFGASGSCDLLYQHFGINA 660 QSDSYRAQIIGSSPIKIAIEAGLRQGWDAFIGSDGSFIGMQGFGASGSCDLLYQHFGINA Sbjct: 601 QSDSYRAQIIGSSPIKIAIEAGLRQGWDAFIGSDGSFIGMQGFGASGSCDLLYQHFGINA 660 Query: 661 IAIVDMVERKLSV 673 IAIVDMVERKLSV Sbjct: 661 IAIVDMVERKLSV 673 >gi|254780195|ref|YP_003064608.1| CTP synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 544 Score = 27.7 bits (60), Expect = 0.62, Method: Compositional matrix adjust. Identities = 13/37 (35%), Positives = 21/37 (56%) Query: 481 PTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVAL 517 PT V+ L AL PD+L++R I +E +++L Sbjct: 191 PTQHSVKELQALGVHPDILLIRADRDIPEMERRKISL 227 >gi|254780869|ref|YP_003065282.1| beta-lactamase domain-containing protein [Candidatus Liberibacter asiaticus str. psy62] Length = 559 Score = 26.2 bits (56), Expect = 2.1, Method: Compositional matrix adjust. Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 5/88 (5%) Query: 410 FSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVL 469 R + GVR A A +H PY + RP + L ++ G +H++ Sbjct: 345 IKNRLVEQGVRVIAEDAEC---PVHVSGHPYPNDLKRMYQWIRPQV-LVAIHG-EPLHLV 399 Query: 470 THDSIGLGEDGPTHQPVEHLAALRAIPD 497 H + L E PV + LR PD Sbjct: 400 AHKELALQEGIACVPPVRNGKMLRLFPD 427 >gi|254780933|ref|YP_003065346.1| valyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 947 Score = 24.6 bits (52), Expect = 5.3, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 3/71 (4%) Query: 313 SQTRADWQERLSSMKSSIRKEFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSEL 372 S +W L S SIR E +P F N +++K+ E K +I S + Sbjct: 792 SIEEVNWIIDLISKVRSIRTEMNVPLKAVVPLVFANIDAHVRKRLECHKCIIDRLSSGNI 851 Query: 373 VLEVVNDCLPE 383 + DC P+ Sbjct: 852 IFA---DCPPD 859 >gi|254780153|ref|YP_003064566.1| phosphoserine aminotransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 391 Score = 24.6 bits (52), Expect = 5.6, Method: Compositional matrix adjust. Identities = 13/30 (43%), Positives = 17/30 (56%) Query: 448 SDYSRPAIRLASLMGIRVIHVLTHDSIGLG 477 SD + L SL+G R + VL +S GLG Sbjct: 75 SDTGAVEMALWSLLGYRGVDVLAWESFGLG 104 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.136 0.406 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 414,653 Number of Sequences: 1233 Number of extensions: 16883 Number of successful extensions: 52 Number of sequences better than 100.0: 7 Number of HSP's better than 100.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 49 Number of HSP's gapped (non-prelim): 7 length of query: 673 length of database: 328,796 effective HSP length: 80 effective length of query: 593 effective length of database: 230,156 effective search space: 136482508 effective search space used: 136482508 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 41 (20.4 bits)