BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780655|ref|YP_003065068.1| transketolase [Candidatus
Liberibacter asiaticus str. psy62]
         (673 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780655|ref|YP_003065068.1| transketolase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 673

 Score = 1398 bits (3618), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 673/673 (100%), Positives = 673/673 (100%)

Query: 1   MGHPVGGRNVVLMKYDDDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCM 60
           MGHPVGGRNVVLMKYDDDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCM
Sbjct: 1   MGHPVGGRNVVLMKYDDDYKKMADAIRFLSMDAIENVNSGHPGLPMGMADVVTALFTQCM 60

Query: 61  VFDPQCPYWPNRDRFVLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYG 120
           VFDPQCPYWPNRDRFVLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYG
Sbjct: 61  VFDPQCPYWPNRDRFVLSAGHGSMLYYALLYLLGYQDVTIEDIKNFRTIGSKTAGHPEYG 120

Query: 121 SCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAI 180
           SCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAI
Sbjct: 121 SCAGIEATTGPLGQGIANAVGMAIAERKLREEFGDVLIDHYTYVLVGDGCLMEGISQEAI 180

Query: 181 SFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTLSVNGHDHHAITSTL 240
           SFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTLSVNGHDHHAITSTL
Sbjct: 181 SFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFRASGWNTLSVNGHDHHAITSTL 240

Query: 241 RKAQLSDKPTMIACETVIGFGSPNRAGTNKVHGSALGQEEIKATRKALNWDLDPFFIPDD 300
           RKAQLSDKPTMIACETVIGFGSPNRAGTNKVHGSALGQEEIKATRKALNWDLDPFFIPDD
Sbjct: 241 RKAQLSDKPTMIACETVIGFGSPNRAGTNKVHGSALGQEEIKATRKALNWDLDPFFIPDD 300

Query: 301 IMKKWRLAGLRSSQTRADWQERLSSMKSSIRKEFERRFSDALPDCFDNAFINLKKKFEHS 360
           IMKKWRLAGLRSSQTRADWQERLSSMKSSIRKEFERRFSDALPDCFDNAFINLKKKFEHS
Sbjct: 301 IMKKWRLAGLRSSQTRADWQERLSSMKSSIRKEFERRFSDALPDCFDNAFINLKKKFEHS 360

Query: 361 KPMIATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVR 420
           KPMIATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVR
Sbjct: 361 KPMIATRKSSELVLEVVNDCLPELIGGSADLTGSNGTKTSQMKAISKSDFSGRYLHYGVR 420

Query: 421 EHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDG 480
           EHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDG
Sbjct: 421 EHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVLTHDSIGLGEDG 480

Query: 481 PTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQY 540
           PTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQY
Sbjct: 481 PTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVALKEKNRPSVLSLSRQNLPFLRTQY 540

Query: 541 ESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFE 600
           ESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFE
Sbjct: 541 ESNNLCALGAYDYISTPNAQVTIFSSGSELKIAVEACEILSSRNISTRVVSVPCFELFFE 600

Query: 601 QSDSYRAQIIGSSPIKIAIEAGLRQGWDAFIGSDGSFIGMQGFGASGSCDLLYQHFGINA 660
           QSDSYRAQIIGSSPIKIAIEAGLRQGWDAFIGSDGSFIGMQGFGASGSCDLLYQHFGINA
Sbjct: 601 QSDSYRAQIIGSSPIKIAIEAGLRQGWDAFIGSDGSFIGMQGFGASGSCDLLYQHFGINA 660

Query: 661 IAIVDMVERKLSV 673
           IAIVDMVERKLSV
Sbjct: 661 IAIVDMVERKLSV 673


>gi|254780195|ref|YP_003064608.1| CTP synthetase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 544

 Score = 27.7 bits (60), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 481 PTHQPVEHLAALRAIPDLLVLRPADSIETLECWQVAL 517
           PT   V+ L AL   PD+L++R    I  +E  +++L
Sbjct: 191 PTQHSVKELQALGVHPDILLIRADRDIPEMERRKISL 227


>gi|254780869|ref|YP_003065282.1| beta-lactamase domain-containing protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 559

 Score = 26.2 bits (56), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 5/88 (5%)

Query: 410 FSGRYLHYGVREHAMAAAMNGIALHKGLAPYSGTFMVFSDYSRPAIRLASLMGIRVIHVL 469
              R +  GVR  A  A      +H    PY         + RP + L ++ G   +H++
Sbjct: 345 IKNRLVEQGVRVIAEDAEC---PVHVSGHPYPNDLKRMYQWIRPQV-LVAIHG-EPLHLV 399

Query: 470 THDSIGLGEDGPTHQPVEHLAALRAIPD 497
            H  + L E      PV +   LR  PD
Sbjct: 400 AHKELALQEGIACVPPVRNGKMLRLFPD 427


>gi|254780933|ref|YP_003065346.1| valyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 947

 Score = 24.6 bits (52), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 313 SQTRADWQERLSSMKSSIRKEFERRFSDALPDCFDNAFINLKKKFEHSKPMIATRKSSEL 372
           S    +W   L S   SIR E        +P  F N   +++K+ E  K +I    S  +
Sbjct: 792 SIEEVNWIIDLISKVRSIRTEMNVPLKAVVPLVFANIDAHVRKRLECHKCIIDRLSSGNI 851

Query: 373 VLEVVNDCLPE 383
           +     DC P+
Sbjct: 852 IFA---DCPPD 859


>gi|254780153|ref|YP_003064566.1| phosphoserine aminotransferase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 391

 Score = 24.6 bits (52), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 448 SDYSRPAIRLASLMGIRVIHVLTHDSIGLG 477
           SD     + L SL+G R + VL  +S GLG
Sbjct: 75  SDTGAVEMALWSLLGYRGVDVLAWESFGLG 104


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.136    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 414,653
Number of Sequences: 1233
Number of extensions: 16883
Number of successful extensions: 52
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 49
Number of HSP's gapped (non-prelim): 7
length of query: 673
length of database: 328,796
effective HSP length: 80
effective length of query: 593
effective length of database: 230,156
effective search space: 136482508
effective search space used: 136482508
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 41 (20.4 bits)