Query gi|254780657|ref|YP_003065070.1| hypothetical protein CLIBASIA_02720 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 61
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 31 17:33:24 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780657.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jcb_A 5-formyltetrahydrofolat 22.4 45 0.0019 14.9 3.6 31 4-34 10-40 (200)
2 2cca_A Peroxidase/catalase T; 18.1 47 0.002 14.9 1.8 21 16-36 143-164 (740)
3 1rg6_A Second splice variant P 15.9 35 0.0015 15.6 0.7 26 17-44 28-53 (75)
4 1itk_A Catalase-peroxidase; he 11.5 88 0.0037 13.4 1.8 21 16-36 131-152 (731)
5 1ydm_A Hypothetical protein YQ 11.3 89 0.0038 13.4 2.3 29 7-35 2-30 (187)
6 3n3r_A Catalase-peroxidase; E1 8.9 1.1E+02 0.0047 12.9 1.8 21 16-36 147-168 (748)
7 1u2k_A Peroxidase/catalase HPI 8.3 1.1E+02 0.0046 12.9 1.2 21 16-36 91-111 (309)
8 1o9d_A 14-3-3-like protein C; 5.9 1.3E+02 0.0055 12.5 0.6 13 17-29 47-59 (260)
9 3mce_A Nascent polypeptide-ass 5.7 1.6E+02 0.0068 12.0 1.5 29 29-57 4-36 (61)
10 3efz_A 14-3-3 protein; 14-3-3, 5.6 1.4E+02 0.0059 12.3 0.6 13 17-29 63-75 (268)
No 1
>2jcb_A 5-formyltetrahydrofolate cyclo-ligase family protein; 10- methenyltetrahydrofolate synthetase, MTHFS, folate metabolism, structural genomics; HET: ADP; 1.6A {Bacillus anthracis}
Probab=22.39 E-value=45 Score=14.94 Aligned_cols=31 Identities=29% Similarity=0.189 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHCCHH
Q ss_conf 5788889888888875226787754310155
Q gi|254780657|r 4 REHKNLIRKKKMIARNLLSPAYRHMKSISLA 34 (61)
Q Consensus 4 rehknlirkkkmiarnllspayrhmksisla 34 (61)
++.|+-+|++-.-.|+-+|+..+.-.|-.++
T Consensus 10 ~~~K~~LRk~~~~~R~~ls~~~~~~~s~~i~ 40 (200)
T 2jcb_A 10 REEKLRLRKQIIEHMNSLSKERYTTLSEQIV 40 (200)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999999999999997299999999999999
No 2
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A*
Probab=18.12 E-value=47 Score=14.88 Aligned_cols=21 Identities=48% Similarity=0.594 Sum_probs=17.0
Q ss_pred HHHHHCCHHHHHH-HHCCHHHH
Q ss_conf 8875226787754-31015540
Q gi|254780657|r 16 IARNLLSPAYRHM-KSISLADL 36 (61)
Q Consensus 16 iarnllspayrhm-ksisladl 36 (61)
.||.||-|.+... ..||.|||
T Consensus 143 kAr~lL~PIK~Kyg~~ISwADL 164 (740)
T 2cca_A 143 KARRLLWPVKKKYGKKLSWADL 164 (740)
T ss_dssp HHHHTTHHHHHHHGGGSCHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHH
T ss_conf 9999999999986677669999
No 3
>1rg6_A Second splice variant P63; P73 SAM-like domain, gene regulation; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=15.95 E-value=35 Score=15.57 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=18.6
Q ss_pred HHHHCCHHHHHHHHCCHHHHCCCCCCCC
Q ss_conf 8752267877543101554042227551
Q gi|254780657|r 17 ARNLLSPAYRHMKSISLADLGAKKIPLE 44 (61)
Q Consensus 17 arnllspayrhmksisladlgakkiple 44 (61)
.+||.+ --|...+++.||++-|||-+
T Consensus 28 ~qgl~s--i~qLe~~sleDL~~mkIp~~ 53 (75)
T 1rg6_A 28 TQGLTT--IYQIEHYSMDDLASLKIPEQ 53 (75)
T ss_dssp HHTCCS--GGGGSSCCHHHHHTTTCCTH
T ss_pred HCCCHH--HHHHHHCCHHHHHCCCCCHH
T ss_conf 825215--99885168988862777377
No 4
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3
Probab=11.50 E-value=88 Score=13.42 Aligned_cols=21 Identities=48% Similarity=0.572 Sum_probs=15.3
Q ss_pred HHHHHCCHHHHHH-HHCCHHHH
Q ss_conf 8875226787754-31015540
Q gi|254780657|r 16 IARNLLSPAYRHM-KSISLADL 36 (61)
Q Consensus 16 iarnllspayrhm-ksisladl 36 (61)
.||.||-|.-... ..||.|||
T Consensus 131 kAr~lL~PIK~Kyg~~ISwADL 152 (731)
T 1itk_A 131 KARRLLLPIKQKYGQKISWADL 152 (731)
T ss_dssp HHHHHTHHHHHHHGGGSCHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHH
T ss_conf 9999989999974899889999
No 5
>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44, X-RAY, PSI, protein structure initiative; 2.50A {Bacillus subtilis}
Probab=11.29 E-value=89 Score=13.38 Aligned_cols=29 Identities=28% Similarity=0.193 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHCCHHH
Q ss_conf 88898888888752267877543101554
Q gi|254780657|r 7 KNLIRKKKMIARNLLSPAYRHMKSISLAD 35 (61)
Q Consensus 7 knlirkkkmiarnllspayrhmksislad 35 (61)
|+-+|++-.-.|+.||+..+.-+|..++.
T Consensus 2 K~~LRk~~~~~R~~ls~~~~~~~s~~i~~ 30 (187)
T 1ydm_A 2 KSQLRKKTLEALSALSNEDILQKTERMYK 30 (187)
T ss_dssp --CHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 79999999999975999999999999999
No 6
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A*
Probab=8.90 E-value=1.1e+02 Score=12.88 Aligned_cols=21 Identities=48% Similarity=0.528 Sum_probs=14.7
Q ss_pred HHHHHCCHHHHHHH-HCCHHHH
Q ss_conf 88752267877543-1015540
Q gi|254780657|r 16 IARNLLSPAYRHMK-SISLADL 36 (61)
Q Consensus 16 iarnllspayrhmk-sisladl 36 (61)
.||.||-|.-...- .||.|||
T Consensus 147 kAr~lL~PIK~Kyg~~ISwADL 168 (748)
T 3n3r_A 147 KARRLLWPIKQKYGRAISWADL 168 (748)
T ss_dssp HHHHHTHHHHHHHGGGSCHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHH
T ss_conf 9999989999972776679999
No 7
>1u2k_A Peroxidase/catalase HPI; KATG, catalase-peroxidase, C-terminal domain, oxidoreductase; 2.00A {Escherichia coli} SCOP: a.93.1.3 PDB: 1u2l_A 1u2j_A
Probab=8.28 E-value=1.1e+02 Score=12.92 Aligned_cols=21 Identities=29% Similarity=0.252 Sum_probs=16.6
Q ss_pred HHHHHCCHHHHHHHHCCHHHH
Q ss_conf 887522678775431015540
Q gi|254780657|r 16 IARNLLSPAYRHMKSISLADL 36 (61)
Q Consensus 16 iarnllspayrhmksisladl 36 (61)
+|+.+|.|....-..||.|||
T Consensus 91 ~a~~~L~pik~k~~~iS~ADL 111 (309)
T 1u2k_A 91 RALPVLEKIQKESGKASLADI 111 (309)
T ss_dssp HHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHH
T ss_conf 789999988752045649999
No 8
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=5.91 E-value=1.3e+02 Score=12.49 Aligned_cols=13 Identities=54% Similarity=0.782 Sum_probs=9.2
Q ss_pred HHHHCCHHHHHHH
Q ss_conf 8752267877543
Q gi|254780657|r 17 ARNLLSPAYRHMK 29 (61)
Q Consensus 17 arnllspayrhmk 29 (61)
-|||||-||.+.-
T Consensus 47 ERnLLsvayKn~i 59 (260)
T 1o9d_A 47 ERNLLSVAYKNVI 59 (260)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999998763
No 9
>3mce_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, homodimer, chaperone; 2.40A {Homo sapiens}
Probab=5.66 E-value=1.6e+02 Score=11.99 Aligned_cols=29 Identities=24% Similarity=0.440 Sum_probs=20.8
Q ss_pred HHCCHHHHCCCCCCC----CCCCCCCEEEEEEC
Q ss_conf 310155404222755----11396313888851
Q gi|254780657|r 29 KSISLADLGAKKIPL----EKKKPKSQLFILCN 57 (61)
Q Consensus 29 ksisladlgakkipl----ekkkpksqlfilcn 57 (61)
.|..++.||-|.+|- .-+|.|..||..-+
T Consensus 4 ~~~~msKLGLK~v~gV~RVtirk~knilfvI~~ 36 (61)
T 3mce_A 4 GSPEFSKLGLRQVTGVTRVTIRKSKNILFVITK 36 (61)
T ss_dssp SSCCGGGTTCEECSSEEEEEEEETTTEEEEESS
T ss_pred CCHHHHHCCCEECCCEEEEEEECCCCEEEEECC
T ss_conf 871133348947799689999907869999769
No 10
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genomics, structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=5.60 E-value=1.4e+02 Score=12.33 Aligned_cols=13 Identities=23% Similarity=0.117 Sum_probs=8.2
Q ss_pred HHHHCCHHHHHHH
Q ss_conf 8752267877543
Q gi|254780657|r 17 ARNLLSPAYRHMK 29 (61)
Q Consensus 17 arnllspayrhmk 29 (61)
-|||||-||.+.-
T Consensus 63 ERnLLSvAyKNvi 75 (268)
T 3efz_A 63 LILLLAGSLRNRV 75 (268)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999983532
Done!