Query gi|254780657|ref|YP_003065070.1| hypothetical protein CLIBASIA_02720 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 61 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 08:15:19 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780657.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1jhfa1 a.4.5.2 (A:2-72) LexA 29.7 17 0.0012 16.0 2.6 29 1-29 3-31 (71) 2 d1ub2a1 a.93.1.3 (A:21-426) Ca 15.3 35 0.0026 14.3 1.8 21 16-36 109-130 (406) 3 d1rg6a_ a.60.1.2 (A:) C-termin 15.0 22 0.0016 15.4 0.7 26 18-45 25-50 (67) 4 d2ccaa2 a.93.1.3 (A:436-720) C 13.6 35 0.0026 14.3 1.4 21 16-36 81-108 (285) 5 d1mwva1 a.93.1.3 (A:35-440) Ca 13.2 43 0.0031 13.8 1.8 21 16-36 113-134 (406) 6 d3efza1 a.118.7.1 (A:46-268) 1 10.9 34 0.0025 14.3 0.6 13 17-29 18-30 (223) 7 d1itka1 a.93.1.3 (A:18-423) Ca 9.8 59 0.0043 13.1 1.8 22 15-36 113-135 (406) 8 d1u2ka_ a.93.1.3 (A:) Catalase 8.4 62 0.0045 13.0 1.2 21 16-36 74-94 (292) 9 d1v8ba2 c.23.12.3 (A:4-234,A:3 5.4 50 0.0036 13.5 -0.6 12 30-41 7-18 (313) 10 d2nn6g3 d.51.1.1 (G:195-274) R 5.4 98 0.0071 11.9 1.3 24 16-45 11-34 (80) No 1 >d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]} Probab=29.72 E-value=17 Score=15.98 Aligned_cols=29 Identities=14% Similarity=0.257 Sum_probs=24.9 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCHHHHHHH Q ss_conf 94057888898888888752267877543 Q gi|254780657|r 1 MTPREHKNLIRKKKMIARNLLSPAYRHMK 29 (61) Q Consensus 1 mtprehknlirkkkmiarnllspayrhmk 29 (61) ||||+.+-|---+..+.+|=.+|.||.+. T Consensus 3 LT~rQ~~vL~~I~~~~~~~G~~Ps~rei~ 31 (71) T d1jhfa1 3 LTARQQEVFDLIRDHISQTGMPPTRAEIA 31 (71) T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCCHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCHHHHH T ss_conf 79999999999999999828898899999 No 2 >d1ub2a1 a.93.1.3 (A:21-426) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Probab=15.25 E-value=35 Score=14.27 Aligned_cols=21 Identities=43% Similarity=0.523 Sum_probs=15.9 Q ss_pred HHHHHCCHHHHHH-HHCCHHHH Q ss_conf 8875226787754-31015540 Q gi|254780657|r 16 IARNLLSPAYRHM-KSISLADL 36 (61) Q Consensus 16 iarnllspayrhm-ksisladl 36 (61) .||.||-|--... +.||+||| T Consensus 109 kAr~lL~pIK~ky~~~IS~ADL 130 (406) T d1ub2a1 109 KARRLLWPIKQKYGNKLSWADL 130 (406) T ss_dssp HHHHHTHHHHHHHGGGSCHHHH T ss_pred HHHHHHHHHHHHCCCCCCHHHH T ss_conf 9999998887642876531137 No 3 >d1rg6a_ a.60.1.2 (A:) C-terminal domain of p63 {Human (Homo sapiens) [TaxId: 9606]} Probab=14.96 E-value=22 Score=15.36 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=18.5 Q ss_pred HHHCCHHHHHHHHCCHHHHCCCCCCCCC Q ss_conf 7522678775431015540422275511 Q gi|254780657|r 18 RNLLSPAYRHMKSISLADLGAKKIPLEK 45 (61) Q Consensus 18 rnllspayrhmksisladlgakkiplek 45 (61) +||.+ --|...+++.||++-|||-+- T Consensus 25 q~l~~--v~qLe~~sleDL~~mkIp~~~ 50 (67) T d1rg6a_ 25 QGLTT--IYQIEHYSMDDLASLKIPEQF 50 (67) T ss_dssp HTCCS--GGGGSSCCHHHHHTTTCCTHH T ss_pred CCCHH--HHHHHHCCHHHHHCCCCCHHH T ss_conf 25206--999861689888707674888 No 4 >d2ccaa2 a.93.1.3 (A:436-720) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Probab=13.60 E-value=35 Score=14.25 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=14.8 Q ss_pred HHHHHCCHHHHHHH-------HCCHHHH Q ss_conf 88752267877543-------1015540 Q gi|254780657|r 16 IARNLLSPAYRHMK-------SISLADL 36 (61) Q Consensus 16 iarnllspayrhmk-------sisladl 36 (61) .||.+|.|...-.- .||.||| T Consensus 81 ~a~~~L~pik~k~p~~~~~~~~IS~ADL 108 (285) T d2ccaa2 81 KVIRTLEEIQESFNSAAPGNIKVSFADL 108 (285) T ss_dssp HHHHHHHHHHHHHHHHCCTTBCCCHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHH T ss_conf 9999999887653013468765329999 No 5 >d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Probab=13.21 E-value=43 Score=13.79 Aligned_cols=21 Identities=48% Similarity=0.588 Sum_probs=15.9 Q ss_pred HHHHHCCHHHHHH-HHCCHHHH Q ss_conf 8875226787754-31015540 Q gi|254780657|r 16 IARNLLSPAYRHM-KSISLADL 36 (61) Q Consensus 16 iarnllspayrhm-ksisladl 36 (61) .||.+|-|.-... +.||.||| T Consensus 113 kar~lLepIK~ky~~~IS~ADL 134 (406) T d1mwva1 113 KARRLLWPIKQKYGRAISWADL 134 (406) T ss_dssp HHHHHTHHHHHHHGGGSCHHHH T ss_pred HHHHHHHHHHHHHCCCCCCCCE T ss_conf 9999999999974777542332 No 6 >d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980 {Cryptosporidium parvum [TaxId: 5807]} Probab=10.86 E-value=34 Score=14.35 Aligned_cols=13 Identities=23% Similarity=0.117 Sum_probs=8.6 Q ss_pred HHHHCCHHHHHHH Q ss_conf 8752267877543 Q gi|254780657|r 17 ARNLLSPAYRHMK 29 (61) Q Consensus 17 arnllspayrhmk 29 (61) -|||||-||.+.- T Consensus 18 eRnLLsvayKn~i 30 (223) T d3efza1 18 LILLLAGSLRNRV 30 (223) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHC T ss_conf 9999999983501 No 7 >d1itka1 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Probab=9.77 E-value=59 Score=13.07 Aligned_cols=22 Identities=45% Similarity=0.501 Sum_probs=15.8 Q ss_pred HHHHHHCCHHHHHH-HHCCHHHH Q ss_conf 88875226787754-31015540 Q gi|254780657|r 15 MIARNLLSPAYRHM-KSISLADL 36 (61) Q Consensus 15 miarnllspayrhm-ksisladl 36 (61) -.||.+|.|.-... +.||.||| T Consensus 113 dkAr~lLepIK~kyg~~IS~ADL 135 (406) T d1itka1 113 DKARRLLLPIKQKYGQKISWADL 135 (406) T ss_dssp HHHHHHTHHHHHHHGGGSCHHHH T ss_pred HHHHHHHHHHHHHCCCCCCCCHH T ss_conf 99999999999862735544304 No 8 >d1u2ka_ a.93.1.3 (A:) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Probab=8.38 E-value=62 Score=12.95 Aligned_cols=21 Identities=29% Similarity=0.252 Sum_probs=16.4 Q ss_pred HHHHHCCHHHHHHHHCCHHHH Q ss_conf 887522678775431015540 Q gi|254780657|r 16 IARNLLSPAYRHMKSISLADL 36 (61) Q Consensus 16 iarnllspayrhmksisladl 36 (61) .||.+|.|--..-..||.||| T Consensus 74 ~a~~~L~~ik~k~~~iS~ADL 94 (292) T d1u2ka_ 74 RALPVLEKIQKESGKASLADI 94 (292) T ss_dssp HHHHHHHHHHHHHCSSCHHHH T ss_pred HHHHHHHHHHHHCCCCCHHHH T ss_conf 778877544420143539999 No 9 >d1v8ba2 c.23.12.3 (A:4-234,A:398-479) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} Probab=5.39 E-value=50 Score=13.45 Aligned_cols=12 Identities=42% Similarity=0.645 Sum_probs=4.4 Q ss_pred HCCHHHHCCCCC Q ss_conf 101554042227 Q gi|254780657|r 30 SISLADLGAKKI 41 (61) Q Consensus 30 sisladlgakki 41 (61) .||||+.|-++| T Consensus 7 DisLA~~G~~~I 18 (313) T d1v8ba2 7 DISLAPFGKMQM 18 (313) T ss_dssp CGGGHHHHHHHH T ss_pred CHHHHHHHHHHH T ss_conf 705548768999 No 10 >d2nn6g3 d.51.1.1 (G:195-274) Ribosomal RNA-processing protein 40, RRP40 {Human (Homo sapiens) [TaxId: 9606]} Probab=5.38 E-value=98 Score=11.89 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=15.6 Q ss_pred HHHHHCCHHHHHHHHCCHHHHCCCCCCCCC Q ss_conf 887522678775431015540422275511 Q gi|254780657|r 16 IARNLLSPAYRHMKSISLADLGAKKIPLEK 45 (61) Q Consensus 16 iarnllspayrhmksisladlgakkiplek 45 (61) .+|.||+|. +.-|..||. ++|.|- T Consensus 11 laR~Ll~~~-----~~vL~~Lgk-~~~FEI 34 (80) T d2nn6g3 11 LIRKLLAPD-----CEIIQEVGK-LYPLEI 34 (80) T ss_dssp HHHHHHCTT-----CSHHHHTTC-SSSCCC T ss_pred HHHHHHCCC-----CHHHHHHHH-HCCEEE T ss_conf 999985699-----879999850-287689 Done!