Query         gi|254780657|ref|YP_003065070.1| hypothetical protein CLIBASIA_02720 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 61
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 08:15:19 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780657.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1jhfa1 a.4.5.2 (A:2-72) LexA   29.7      17  0.0012   16.0   2.6   29    1-29      3-31  (71)
  2 d1ub2a1 a.93.1.3 (A:21-426) Ca  15.3      35  0.0026   14.3   1.8   21   16-36    109-130 (406)
  3 d1rg6a_ a.60.1.2 (A:) C-termin  15.0      22  0.0016   15.4   0.7   26   18-45     25-50  (67)
  4 d2ccaa2 a.93.1.3 (A:436-720) C  13.6      35  0.0026   14.3   1.4   21   16-36     81-108 (285)
  5 d1mwva1 a.93.1.3 (A:35-440) Ca  13.2      43  0.0031   13.8   1.8   21   16-36    113-134 (406)
  6 d3efza1 a.118.7.1 (A:46-268) 1  10.9      34  0.0025   14.3   0.6   13   17-29     18-30  (223)
  7 d1itka1 a.93.1.3 (A:18-423) Ca   9.8      59  0.0043   13.1   1.8   22   15-36    113-135 (406)
  8 d1u2ka_ a.93.1.3 (A:) Catalase   8.4      62  0.0045   13.0   1.2   21   16-36     74-94  (292)
  9 d1v8ba2 c.23.12.3 (A:4-234,A:3   5.4      50  0.0036   13.5  -0.6   12   30-41      7-18  (313)
 10 d2nn6g3 d.51.1.1 (G:195-274) R   5.4      98  0.0071   11.9   1.3   24   16-45     11-34  (80)

No 1  
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=29.72  E-value=17  Score=15.98  Aligned_cols=29  Identities=14%  Similarity=0.257  Sum_probs=24.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             94057888898888888752267877543
Q gi|254780657|r    1 MTPREHKNLIRKKKMIARNLLSPAYRHMK   29 (61)
Q Consensus         1 mtprehknlirkkkmiarnllspayrhmk   29 (61)
                      ||||+.+-|---+..+.+|=.+|.||.+.
T Consensus         3 LT~rQ~~vL~~I~~~~~~~G~~Ps~rei~   31 (71)
T d1jhfa1           3 LTARQQEVFDLIRDHISQTGMPPTRAEIA   31 (71)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf             79999999999999999828898899999


No 2  
>d1ub2a1 a.93.1.3 (A:21-426) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]}
Probab=15.25  E-value=35  Score=14.27  Aligned_cols=21  Identities=43%  Similarity=0.523  Sum_probs=15.9

Q ss_pred             HHHHHCCHHHHHH-HHCCHHHH
Q ss_conf             8875226787754-31015540
Q gi|254780657|r   16 IARNLLSPAYRHM-KSISLADL   36 (61)
Q Consensus        16 iarnllspayrhm-ksisladl   36 (61)
                      .||.||-|--... +.||+|||
T Consensus       109 kAr~lL~pIK~ky~~~IS~ADL  130 (406)
T d1ub2a1         109 KARRLLWPIKQKYGNKLSWADL  130 (406)
T ss_dssp             HHHHHTHHHHHHHGGGSCHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCHHHH
T ss_conf             9999998887642876531137


No 3  
>d1rg6a_ a.60.1.2 (A:) C-terminal domain of p63 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.96  E-value=22  Score=15.36  Aligned_cols=26  Identities=27%  Similarity=0.397  Sum_probs=18.5

Q ss_pred             HHHCCHHHHHHHHCCHHHHCCCCCCCCC
Q ss_conf             7522678775431015540422275511
Q gi|254780657|r   18 RNLLSPAYRHMKSISLADLGAKKIPLEK   45 (61)
Q Consensus        18 rnllspayrhmksisladlgakkiplek   45 (61)
                      +||.+  --|...+++.||++-|||-+-
T Consensus        25 q~l~~--v~qLe~~sleDL~~mkIp~~~   50 (67)
T d1rg6a_          25 QGLTT--IYQIEHYSMDDLASLKIPEQF   50 (67)
T ss_dssp             HTCCS--GGGGSSCCHHHHHTTTCCTHH
T ss_pred             CCCHH--HHHHHHCCHHHHHCCCCCHHH
T ss_conf             25206--999861689888707674888


No 4  
>d2ccaa2 a.93.1.3 (A:436-720) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=13.60  E-value=35  Score=14.25  Aligned_cols=21  Identities=24%  Similarity=0.270  Sum_probs=14.8

Q ss_pred             HHHHHCCHHHHHHH-------HCCHHHH
Q ss_conf             88752267877543-------1015540
Q gi|254780657|r   16 IARNLLSPAYRHMK-------SISLADL   36 (61)
Q Consensus        16 iarnllspayrhmk-------sisladl   36 (61)
                      .||.+|.|...-.-       .||.|||
T Consensus        81 ~a~~~L~pik~k~p~~~~~~~~IS~ADL  108 (285)
T d2ccaa2          81 KVIRTLEEIQESFNSAAPGNIKVSFADL  108 (285)
T ss_dssp             HHHHHHHHHHHHHHHHCCTTBCCCHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCHHHH
T ss_conf             9999999887653013468765329999


No 5  
>d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]}
Probab=13.21  E-value=43  Score=13.79  Aligned_cols=21  Identities=48%  Similarity=0.588  Sum_probs=15.9

Q ss_pred             HHHHHCCHHHHHH-HHCCHHHH
Q ss_conf             8875226787754-31015540
Q gi|254780657|r   16 IARNLLSPAYRHM-KSISLADL   36 (61)
Q Consensus        16 iarnllspayrhm-ksisladl   36 (61)
                      .||.+|-|.-... +.||.|||
T Consensus       113 kar~lLepIK~ky~~~IS~ADL  134 (406)
T d1mwva1         113 KARRLLWPIKQKYGRAISWADL  134 (406)
T ss_dssp             HHHHHTHHHHHHHGGGSCHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCCCCE
T ss_conf             9999999999974777542332


No 6  
>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980 {Cryptosporidium parvum [TaxId: 5807]}
Probab=10.86  E-value=34  Score=14.35  Aligned_cols=13  Identities=23%  Similarity=0.117  Sum_probs=8.6

Q ss_pred             HHHHCCHHHHHHH
Q ss_conf             8752267877543
Q gi|254780657|r   17 ARNLLSPAYRHMK   29 (61)
Q Consensus        17 arnllspayrhmk   29 (61)
                      -|||||-||.+.-
T Consensus        18 eRnLLsvayKn~i   30 (223)
T d3efza1          18 LILLLAGSLRNRV   30 (223)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHC
T ss_conf             9999999983501


No 7  
>d1itka1 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=9.77  E-value=59  Score=13.07  Aligned_cols=22  Identities=45%  Similarity=0.501  Sum_probs=15.8

Q ss_pred             HHHHHHCCHHHHHH-HHCCHHHH
Q ss_conf             88875226787754-31015540
Q gi|254780657|r   15 MIARNLLSPAYRHM-KSISLADL   36 (61)
Q Consensus        15 miarnllspayrhm-ksisladl   36 (61)
                      -.||.+|.|.-... +.||.|||
T Consensus       113 dkAr~lLepIK~kyg~~IS~ADL  135 (406)
T d1itka1         113 DKARRLLLPIKQKYGQKISWADL  135 (406)
T ss_dssp             HHHHHHTHHHHHHHGGGSCHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCCCCHH
T ss_conf             99999999999862735544304


No 8  
>d1u2ka_ a.93.1.3 (A:) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]}
Probab=8.38  E-value=62  Score=12.95  Aligned_cols=21  Identities=29%  Similarity=0.252  Sum_probs=16.4

Q ss_pred             HHHHHCCHHHHHHHHCCHHHH
Q ss_conf             887522678775431015540
Q gi|254780657|r   16 IARNLLSPAYRHMKSISLADL   36 (61)
Q Consensus        16 iarnllspayrhmksisladl   36 (61)
                      .||.+|.|--..-..||.|||
T Consensus        74 ~a~~~L~~ik~k~~~iS~ADL   94 (292)
T d1u2ka_          74 RALPVLEKIQKESGKASLADI   94 (292)
T ss_dssp             HHHHHHHHHHHHHCSSCHHHH
T ss_pred             HHHHHHHHHHHHCCCCCHHHH
T ss_conf             778877544420143539999


No 9  
>d1v8ba2 c.23.12.3 (A:4-234,A:398-479) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}
Probab=5.39  E-value=50  Score=13.45  Aligned_cols=12  Identities=42%  Similarity=0.645  Sum_probs=4.4

Q ss_pred             HCCHHHHCCCCC
Q ss_conf             101554042227
Q gi|254780657|r   30 SISLADLGAKKI   41 (61)
Q Consensus        30 sisladlgakki   41 (61)
                      .||||+.|-++|
T Consensus         7 DisLA~~G~~~I   18 (313)
T d1v8ba2           7 DISLAPFGKMQM   18 (313)
T ss_dssp             CGGGHHHHHHHH
T ss_pred             CHHHHHHHHHHH
T ss_conf             705548768999


No 10 
>d2nn6g3 d.51.1.1 (G:195-274) Ribosomal RNA-processing protein 40, RRP40 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.38  E-value=98  Score=11.89  Aligned_cols=24  Identities=33%  Similarity=0.599  Sum_probs=15.6

Q ss_pred             HHHHHCCHHHHHHHHCCHHHHCCCCCCCCC
Q ss_conf             887522678775431015540422275511
Q gi|254780657|r   16 IARNLLSPAYRHMKSISLADLGAKKIPLEK   45 (61)
Q Consensus        16 iarnllspayrhmksisladlgakkiplek   45 (61)
                      .+|.||+|.     +.-|..||. ++|.|-
T Consensus        11 laR~Ll~~~-----~~vL~~Lgk-~~~FEI   34 (80)
T d2nn6g3          11 LIRKLLAPD-----CEIIQEVGK-LYPLEI   34 (80)
T ss_dssp             HHHHHHCTT-----CSHHHHTTC-SSSCCC
T ss_pred             HHHHHHCCC-----CHHHHHHHH-HCCEEE
T ss_conf             999985699-----879999850-287689


Done!