RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780657|ref|YP_003065070.1| hypothetical protein
CLIBASIA_02720 [Candidatus Liberibacter asiaticus str. psy62]
         (61 letters)



>1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase
          homolog; MTHFS, 5- formyltetrahydrofolate cyclo-ligase,
          structural genomics; 2.20A {Mycoplasma pneumoniae} (A:)
          Length = 189

 Score = 26.1 bits (57), Expect = 1.9
 Identities = 7/35 (20%), Positives = 12/35 (34%)

Query: 1  MTPREHKNLIRKKKMIARNLLSPAYRHMKSISLAD 35
                KN +RK+ +  R  LS   +      +  
Sbjct: 22 FQGHMDKNALRKQILQKRMALSTIEKSHLDQKINQ 56


>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer,
          acetylation, ATP-binding, cytoplasm, folate-binding,
          magnesium, nucleotide-binding; HET: 10F; 1.80A {Homo
          sapiens} PDB: 3hxt_A* 3hy4_A* 3hy6_A (A:)
          Length = 203

 Score = 25.1 bits (54), Expect = 3.4
 Identities = 6/34 (17%), Positives = 11/34 (32%)

Query: 2  TPREHKNLIRKKKMIARNLLSPAYRHMKSISLAD 35
               K  +R +       +S   R  +S  L+ 
Sbjct: 5  AVSSAKRSLRGELKQRLRAMSAEERLRQSRVLSQ 38


>2jcb_A 5-formyltetrahydrofolate cyclo-ligase family protein; 10-
          methenyltetrahydrofolate synthetase, MTHFS, folate
          metabolism, structural genomics; HET: ADP; 1.6A
          {Bacillus anthracis} (A:)
          Length = 200

 Score = 25.0 bits (54), Expect = 4.1
 Identities = 9/34 (26%), Positives = 13/34 (38%)

Query: 2  TPREHKNLIRKKKMIARNLLSPAYRHMKSISLAD 35
            RE K  +RK+ +   N LS       S  +  
Sbjct: 8  HVREEKLRLRKQIIEHMNSLSKERYTTLSEQIVF 41


>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural
          genomics, PSI, protein structure initiative, northeast
          structural genomics consortium; NMR {Aquifex aeolicus}
          (A:)
          Length = 194

 Score = 23.5 bits (50), Expect = 9.8
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 7  KNLIRKKKMIARNLLSPAYRHMKSISLAD 35
          K+ +RKK +  R  LS   R   S  +  
Sbjct: 3  KSELRKKVLHKRINLSEEERRRLSEKVIS 31


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.320    0.132    0.370 

Gapped
Lambda     K      H
   0.267   0.0516    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 414,454
Number of extensions: 13463
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 7
Length of query: 61
Length of database: 4,956,049
Length adjustment: 30
Effective length of query: 31
Effective length of database: 3,941,899
Effective search space: 122198869
Effective search space used: 122198869
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.5 bits)