BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780657|ref|YP_003065070.1| hypothetical protein
CLIBASIA_02720 [Candidatus Liberibacter asiaticus str. psy62]
         (61 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780657|ref|YP_003065070.1| hypothetical protein CLIBASIA_02720 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 61

 Score =  121 bits (304), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 61/61 (100%), Positives = 61/61 (100%)

Query: 1  MTPREHKNLIRKKKMIARNLLSPAYRHMKSISLADLGAKKIPLEKKKPKSQLFILCNRKS 60
          MTPREHKNLIRKKKMIARNLLSPAYRHMKSISLADLGAKKIPLEKKKPKSQLFILCNRKS
Sbjct: 1  MTPREHKNLIRKKKMIARNLLSPAYRHMKSISLADLGAKKIPLEKKKPKSQLFILCNRKS 60

Query: 61 M 61
          M
Sbjct: 61 M 61


>gi|254780591|ref|YP_003065004.1| aminomethyltransferase protein (glycine cleavage) [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 273

 Score = 21.9 bits (45), Expect = 1.9,   Method: Composition-based stats.
 Identities = 7/12 (58%), Positives = 11/12 (91%)

Query: 5   EHKNLIRKKKMI 16
           +H+N+IRK+ MI
Sbjct: 195 QHRNIIRKRPMI 206


>gi|254780245|ref|YP_003064658.1| 50S ribosomal protein L18 [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 120

 Score = 20.0 bits (40), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)

Query: 12 KKKMIARNLLSPAYRHMKSIS 32
          KKK++AR + S   RH+KS+S
Sbjct: 4  KKKVLARRI-SRIRRHLKSVS 23


>gi|254780282|ref|YP_003064695.1| putative transcription regulator protein [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 299

 Score = 20.0 bits (40), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 6/15 (40%), Positives = 11/15 (73%)

Query: 25 YRHMKSISLADLGAK 39
          YRH + ++L + G+K
Sbjct: 51 YRHARGLTLTEQGSK 65


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.132    0.370 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,424
Number of Sequences: 1233
Number of extensions: 1019
Number of successful extensions: 5
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 61
length of database: 328,796
effective HSP length: 33
effective length of query: 28
effective length of database: 288,107
effective search space:  8066996
effective search space used:  8066996
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.9 bits)
S2: 31 (16.5 bits)