HHsearch alignment of GI: 254780658 and MMDB domain: 1wkc_A_
>1wkc_A (A:) HB8 TT1367 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus HB8}
Probab=100.00 E-value=8e-38 Score=221.56 Aligned_cols=107 Identities=21% Similarity=0.316 Sum_probs=97.9
Q ss_pred CEEEEECCCCCCEECCCCCCCCCCCC-CCCCCCEEEEHHHHHCCCHHHHCCCCEEHHHHHHHHHHCCCCEEEEEEECHHH
Q ss_conf 93465348885246488870889998-61146677401422111001112486037899988874499837999832232
Q gi|254780658|r 1 MIFRQYENPTDLVKSAVGTLSPPSYA-KEMSPDLILMPLIAFDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDMQ 79 (113)
Q Consensus 1 l~F~~~~~~~~l~~~~~gI~EP~~~~-~~~~~DlilVP~lafD~~G~RLG~GgGyYDR~l~~~~~~~~~~~~igla~~~q 79 (113)
|.|..|.+.++|.+++|||+||..+. ....+|++|||+||||.+|+|||||||||||+|++. ++.+|||||++|
T Consensus 72 ~~~~~~~~~~~l~~~~~gi~eP~~~~~~~~~~DlvivP~lafd~~G~RlG~G~GyYDR~L~~~-----~~~~i~l~~~~q 146 (184)
T 1wkc_A 72 GKGLTVHPFGPLAPGPFGLLEPTTPPEDPRVLDLVVVPGLAFDREGYRLGHGQGFYDRFLKEV-----RAATVGVVPQAL 146 (184)
T ss_dssp TTEEEEEESCCBC-------CBCSCCBCGGGCSEEEECCSEEETTSCEECCSSCHHHHHHHHC-----CSEEEEECCGGG
T ss_pred CCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHHHHHHCCCCCCCCCEEHHHHHHHC-----CCCEEEEEEHHH
T ss_conf 201121302100123220234333312355663776236898760761156862036677653-----886599977654
Q ss_pred EECCCCCCCCCCCCCEEECCCCEEEECHHHCCC
Q ss_conf 424789984475115899898559700333024
Q gi|254780658|r 80 ETSCIQAEATDIRLHAILTESRFSQFSTEHIEK 112 (113)
Q Consensus 80 ~~~~ip~e~hD~~ld~iiTe~~~~~f~~~~~~~ 112 (113)
+++++|.|+||++||+||||++++++++....+
T Consensus 147 ~~~~ip~e~hD~~ld~iiTe~~~~~~~~~~~~~ 179 (184)
T 1wkc_A 147 LFPALPRDPWDVPVDHLATEAGVEAVKRPAPGP 179 (184)
T ss_dssp EESCCCCCTTCCCCSEEEETTEEEECCCC----
T ss_pred CCCCCCCCCCCEECCEEEECCCCEEECCCCCCC
T ss_conf 727879985070379999887646946899998