Query gi|254780658|ref|YP_003065071.1| 5-formyltetrahydrofolate cyclo-ligase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 113 No_of_seqs 112 out of 1985 Neff 6.0 Searched_HMMs 23785 Date Tue May 31 17:14:50 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780658.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1sou_A 5,10-methenyltetrahydro 100.0 2.1E-40 8.4E-45 234.5 9.4 103 1-108 80-184 (194) 2 2jcb_A 5-formyltetrahydrofolat 100.0 3.1E-40 1.3E-44 233.6 5.4 102 1-107 93-198 (200) 3 1ydm_A Hypothetical protein YQ 100.0 1.7E-39 7E-44 229.7 5.4 100 1-105 82-185 (187) 4 3hy3_A 5-formyltetrahydrofolat 100.0 7.4E-39 3.1E-43 226.3 7.2 103 1-103 90-202 (203) 5 1wkc_A HB8 TT1367 protein; str 100.0 1.1E-38 4.4E-43 225.4 7.8 100 1-108 75-175 (184) 6 1sbq_A H91_ORF164, 5,10-methen 100.0 1E-32 4.4E-37 193.6 4.8 80 11-100 110-189 (189) 7 2abw_A PDX2 protein, glutamina 31.1 14 0.00057 17.6 1.1 53 28-82 41-94 (227) 8 1z7m_A ATP phosphoribosyltrans 29.1 13 0.00055 17.7 0.7 30 45-78 298-327 (344) 9 2iss_D Glutamine amidotransfer 25.4 29 0.0012 15.9 2.0 52 28-83 55-106 (208) 10 3od1_A ATP phosphoribosyltrans 23.2 22 0.00094 16.5 1.0 31 45-79 291-321 (400) 11 2ywd_A Glutamine amidotransfer 22.3 39 0.0016 15.2 2.1 52 28-82 37-88 (191) 12 1x9p_A Penton protein; jellyro 21.1 20 0.00083 16.8 0.4 22 27-48 186-207 (523) 13 1gpw_B Amidotransferase HISH; 20.1 42 0.0018 15.0 1.9 52 28-83 40-92 (201) No 1 >1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Aquifex aeolicus} SCOP: c.124.1.6 Probab=100.00 E-value=2.1e-40 Score=234.52 Aligned_cols=103 Identities=28% Similarity=0.542 Sum_probs=92.9 Q ss_pred CEEEEECCCCCCEECCCCCCCCCCCCC--CCCCCEEEEHHHHHCCCHHHHCCCCEEHHHHHHHHHHCCCCEEEEEEECHH Q ss_conf 934653488852464888708899986--114667740142211100111248603789998887449983799983223 Q gi|254780658|r 1 MIFRQYENPTDLVKSAVGTLSPPSYAK--EMSPDLILMPLIAFDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDM 78 (113) Q Consensus 1 l~F~~~~~~~~l~~~~~gI~EP~~~~~--~~~~DlilVP~lafD~~G~RLG~GgGyYDR~l~~~~~~~~~~~~igla~~~ 78 (113) |.|+.|.+.++|++|+|||+||..... ...+|++||||||||++|+|||||||||||+|+++ ++.+|||||++ T Consensus 80 ~~~~~~~~~~~l~~~~~gI~EP~~~~~~~~~~iDlilVP~lafD~~G~RLG~GgGyYDR~L~~~-----~~~~igl~~~~ 154 (194) T 1sou_A 80 ISLYRVHSPACLGVGAFGIMEPVEGERVNPEDVDFIAVPGVAFDLEGYRLGFGKGYYDRLLKRV-----KGLKVGVAYSF 154 (194) T ss_dssp EEEEEESSSCCCEECSSSCEECCSSEEECGGGCSEEEECCSCBCSSSCBCCSCCSSHHHHHHHC-----CSEEEEECCGG T ss_pred CEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCEEECCEEEEECCCEEECCCCCCHHHHHHHC-----CCCEEEEEEHH T ss_conf 2689944774223587566658987657875477874052356318918518786088997357-----99889997256 Q ss_pred HEECCCCCCCCCCCCCEEECCCCEEEECHH Q ss_conf 242478998447511589989855970033 Q gi|254780658|r 79 QETSCIQAEATDIRLHAILTESRFSQFSTE 108 (113) Q Consensus 79 q~~~~ip~e~hD~~ld~iiTe~~~~~f~~~ 108 (113) |+++++|.|+||++||+||||+++++|++. T Consensus 155 Q~~~~ip~e~hD~~ld~iiTe~~i~~~~~~ 184 (194) T 1sou_A 155 QVFERLPRDAWDIPVDVLVTEKNVRRLRDG 184 (194) T ss_dssp GBCSCCCCCSCCCCCSEEECSSCEEESCCC T ss_pred HCCCCCCCCCCCCCCCEEEECCCEEEECCC T ss_conf 141888997213288999927204991799 No 2 >2jcb_A 5-formyltetrahydrofolate cyclo-ligase family protein; 10- methenyltetrahydrofolate synthetase, MTHFS, folate metabolism, structural genomics; HET: ADP; 1.6A {Bacillus anthracis} Probab=100.00 E-value=3.1e-40 Score=233.57 Aligned_cols=102 Identities=30% Similarity=0.431 Sum_probs=92.5 Q ss_pred CEEEEECCCCCCEECCCCCCCCCCCC----CCCCCCEEEEHHHHHCCCHHHHCCCCEEHHHHHHHHHHCCCCEEEEEEEC Q ss_conf 93465348885246488870889998----61146677401422111001112486037899988874499837999832 Q gi|254780658|r 1 MIFRQYENPTDLVKSAVGTLSPPSYA----KEMSPDLILMPLIAFDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAF 76 (113) Q Consensus 1 l~F~~~~~~~~l~~~~~gI~EP~~~~----~~~~~DlilVP~lafD~~G~RLG~GgGyYDR~l~~~~~~~~~~~~igla~ 76 (113) |.|+.|++.++|++|+|||+||..+. ....+|++||||||||++|+|||||||||||+|+++ ++.+||+|| T Consensus 93 m~f~~~~~~~~l~~~~~gI~EP~~~~~~~~~~~~iDlilVP~lafD~~G~RLG~GgGyYDR~L~~~-----~~~~igl~~ 167 (200) T 2jcb_A 93 MSFRQISNFDQLETVYMNLREPIPALTEEVNADEIDLQIVPGVAYTERGERIGYGGGYYDRYLVHY-----KGKTLSLAY 167 (200) T ss_dssp EEEEEESSGGGEEEEETTEEEECGGGCEECCGGGCSEEECCCSEECTTSCEECSSSCHHHHHTTTC-----CSEEEEECC T ss_pred EEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECHHEECCCCCCCCCCCCHHHHHHHCC-----CCCEEEEEE T ss_conf 789964880054530468776687555522566676898311335257937206786544254316-----998999983 Q ss_pred HHHEECCCCCCCCCCCCCEEECCCCEEEECH Q ss_conf 2324247899844751158998985597003 Q gi|254780658|r 77 DMQETSCIQAEATDIRLHAILTESRFSQFST 107 (113) Q Consensus 77 ~~q~~~~ip~e~hD~~ld~iiTe~~~~~f~~ 107 (113) ++|+++++|.|+||++||+||||++++.+|. T Consensus 168 ~~Q~~~~ip~e~hD~~lD~iiTe~g~i~~ng 198 (200) T 2jcb_A 168 SFQMVEHIPVEPFDKNVEKIITEKGTMVKNG 198 (200) T ss_dssp GGGBCSCCCCCTTCCCCSEEEETTEEEECC- T ss_pred HHEECCCCCCCCCCCCCCEEEECCEEEECCC T ss_conf 4307188899732217899997990797688 No 3 >1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44, X-RAY, PSI, protein structure initiative; 2.50A {Bacillus subtilis} Probab=100.00 E-value=1.7e-39 Score=229.71 Aligned_cols=100 Identities=29% Similarity=0.539 Sum_probs=90.3 Q ss_pred CEEEEECCCCCCEECCCCCCCCCCCC----CCCCCCEEEEHHHHHCCCHHHHCCCCEEHHHHHHHHHHCCCCEEEEEEEC Q ss_conf 93465348885246488870889998----61146677401422111001112486037899988874499837999832 Q gi|254780658|r 1 MIFRQYENPTDLVKSAVGTLSPPSYA----KEMSPDLILMPLIAFDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAF 76 (113) Q Consensus 1 l~F~~~~~~~~l~~~~~gI~EP~~~~----~~~~~DlilVP~lafD~~G~RLG~GgGyYDR~l~~~~~~~~~~~~igla~ 76 (113) |.|+.|++.+.|++|+|||+||..+. ....+|++||||||||++|+|||||||||||+|++++ ..+||+|| T Consensus 82 l~f~~~~~~~~l~~~~~gI~EP~~~~~~~~~~~~iDlilVP~vafD~~G~RlG~GgGyYDR~L~~~~-----~~~igl~~ 156 (187) T 1ydm_A 82 MQFRTYQTDDQLETVYAGLLEPVIEKTKEVNPSQIDLMIVPGVCFDVNGFRVGFGGGYYDRYLSEYE-----GKTVSLLL 156 (187) T ss_dssp CCEEECCCCTTHHHHHTTSCCCC--CCCCCCGGGCCEEECCCSEEETTSCEECCSCCSTTTGGGTCC-----SEEEEECC T ss_pred EEEEECCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHCC-----CCEEEEEE T ss_conf 6899727813421176898467754455226333551562157885779462278648888862578-----98899997 Q ss_pred HHHEECCCCCCCCCCCCCEEECCCCEEEE Q ss_conf 23242478998447511589989855970 Q gi|254780658|r 77 DMQETSCIQAEATDIRLHAILTESRFSQF 105 (113) Q Consensus 77 ~~q~~~~ip~e~hD~~ld~iiTe~~~~~f 105 (113) ++|+++++|.|+||++||+|+||+++++- T Consensus 157 ~~Q~~~~ip~e~hD~~ld~iiTe~~ii~C 185 (187) T 1ydm_A 157 ECQLFAHVPRLPHDIPVHKLITEDRIISC 185 (187) T ss_dssp GGGEESCCCCCTTCCCCSEEECSSCEEEC T ss_pred EEEEECCCCCCCCCCCCCEEEECCEEEEE T ss_conf 64781679997522297999958800881 No 4 >3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer, acetylation, ATP-binding, cytoplasm, folate-binding, magnesium, nucleotide-binding; HET: 10F; 1.80A {Homo sapiens} PDB: 3hxt_A* 3hy4_A* 3hy6_A Probab=100.00 E-value=7.4e-39 Score=226.25 Aligned_cols=103 Identities=30% Similarity=0.495 Sum_probs=89.7 Q ss_pred CEEEEECCCCC---CEECCCCCCCCCCCC---C---CCCCCEEEEHHHHHCCCHHHHCCCCEEHHHHHHHHHHC-CCCEE Q ss_conf 93465348885---246488870889998---6---11466774014221110011124860378999888744-99837 Q gi|254780658|r 1 MIFRQYENPTD---LVKSAVGTLSPPSYA---K---EMSPDLILMPLIAFDLKGNRIGYGRGYYDRAIADIRLE-GKNPY 70 (113) Q Consensus 1 l~F~~~~~~~~---l~~~~~gI~EP~~~~---~---~~~~DlilVP~lafD~~G~RLG~GgGyYDR~l~~~~~~-~~~~~ 70 (113) |.|+.|+..++ |.+|+|||+||.... + ...+|++|||+||||++|+|||||||||||+|+++... ..++. T Consensus 90 l~f~~~~~~~~~~~l~~~~~~i~ep~~~~~~~~~~~~~~iDlilVP~lafD~~G~RLG~GgGyYDR~L~~~~~~~~~~~~ 169 (203) T 3hy3_A 90 MDMVRIESPEEISLLPKTSWNIPQPGEGDVREEALSTGGLDLIFMPGLGFDKHGNRLGRGKGYYDAYLKRCLQHQEVKPY 169 (203) T ss_dssp EEEEEECCHHHHTTSCBCTTSCBCCCTTCCCCBGGGTTCCSEEEECCSEECTTCCEECSSSCHHHHHHHHHTTTCSSCCE T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEECCCCCCCHHHHHHHHCCCCCCC T ss_conf 13677547652211257876888887556455656755578898333888068842307885433699985540577887 Q ss_pred EEEEECHHHEECCCCCCCCCCCCCEEECCCCEE Q ss_conf 999832232424789984475115899898559 Q gi|254780658|r 71 LLGIAFDMQETSCIQAEATDIRLHAILTESRFS 103 (113) Q Consensus 71 ~igla~~~q~~~~ip~e~hD~~ld~iiTe~~~~ 103 (113) +||+||++|+++++|.|+||++||+||||++++ T Consensus 170 ~igl~~~~Q~~~~ip~e~hD~~lD~iiTE~g~~ 202 (203) T 3hy3_A 170 TLALAFKEQICLQVPVNENDMKVDEVLYEDSST 202 (203) T ss_dssp EEEECCGGGBCSCCCCC--CCCCSEEECC---- T ss_pred EEEEEEHHEEECCCCCCCCCCCCCEEEECCCCC T ss_conf 899983010407789951322889998195777 No 5 >1wkc_A HB8 TT1367 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus HB8} SCOP: c.124.1.6 Probab=100.00 E-value=1.1e-38 Score=225.43 Aligned_cols=100 Identities=22% Similarity=0.441 Sum_probs=88.7 Q ss_pred CEEEEECCCCCCEECCCCCCCCCCCC-CCCCCCEEEEHHHHHCCCHHHHCCCCEEHHHHHHHHHHCCCCEEEEEEECHHH Q ss_conf 93465348885246488870889998-61146677401422111001112486037899988874499837999832232 Q gi|254780658|r 1 MIFRQYENPTDLVKSAVGTLSPPSYA-KEMSPDLILMPLIAFDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDMQ 79 (113) Q Consensus 1 l~F~~~~~~~~l~~~~~gI~EP~~~~-~~~~~DlilVP~lafD~~G~RLG~GgGyYDR~l~~~~~~~~~~~~igla~~~q 79 (113) |.|+.| ++|++|+|||+||.... ....+|++||||||||++|+|||||||||||+|+++ ++.+||+||++| T Consensus 75 l~~~~~---~~l~~~~~GI~EP~~~~~~~~~~DliiVP~lafD~~G~RLGyGgGyYDR~L~~~-----~~~~igl~~~~q 146 (184) T 1wkc_A 75 LTVHPF---GPLAPGPFGLLEPTTPPEDPRVLDLVVVPGLAFDREGYRLGHGQGFYDRFLKEV-----RAATVGVVPQAL 146 (184) T ss_dssp EEEEES---CCBC-------CBCSCCBCGGGCSEEEECCSEEETTSCEECCSSCHHHHHHHHC-----CSEEEEECCGGG T ss_pred EEEEEC---CCCCCCCCCCCCCCCCCCCCCCCCEEECCEEEECCCCCEEECCCCHHHHHHHHC-----CCCEEEEEEHHH T ss_conf 699768---876627777646643445766564586143688077853407984477777445-----898899977540 Q ss_pred EECCCCCCCCCCCCCEEECCCCEEEECHH Q ss_conf 42478998447511589989855970033 Q gi|254780658|r 80 ETSCIQAEATDIRLHAILTESRFSQFSTE 108 (113) Q Consensus 80 ~~~~ip~e~hD~~ld~iiTe~~~~~f~~~ 108 (113) +++++|.|+||++||+||||+++++|.+. T Consensus 147 ~~~~ip~e~hDi~ld~iiTe~gi~~~~~~ 175 (184) T 1wkc_A 147 LFPALPRDPWDVPVDHLATEAGVEAVKRP 175 (184) T ss_dssp EESCCCCCTTCCCCSEEEETTEEEECCCC T ss_pred EECCCCCCCCCCCCCEEEECCCCEEECCC T ss_conf 70768987213377999968657793789 No 6 >1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog; MTHFS, 5- formyltetrahydrofolate cyclo-ligase, structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP: c.124.1.6 PDB: 1u3f_A* 1u3g_A* Probab=99.97 E-value=1e-32 Score=193.57 Aligned_cols=80 Identities=29% Similarity=0.636 Sum_probs=69.2 Q ss_pred CCEECCCCCCCCCCCCCCCCCCEEEEHHHHHCCCHHHHCCCCEEHHHHHHHHHHCCCCEEEEEEECHHHEECCCCCCCCC Q ss_conf 52464888708899986114667740142211100111248603789998887449983799983223242478998447 Q gi|254780658|r 11 DLVKSAVGTLSPPSYAKEMSPDLILMPLIAFDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDMQETSCIQAEATD 90 (113) Q Consensus 11 ~l~~~~~gI~EP~~~~~~~~~DlilVP~lafD~~G~RLG~GgGyYDR~l~~~~~~~~~~~~igla~~~q~~~~ip~e~hD 90 (113) .+....+|+.|| ..+|++||||||||++|+|||||||||||||++++ +++++|||||++|+++. |.|+|| T Consensus 110 ~f~~~~~~~~eP------~~iDliiVP~laFD~~G~RLGyGgGyYDR~L~~~~---~~~~~IGla~~~Q~~d~-~~e~hD 179 (189) T 1sbq_A 110 IFIDQETNTFEP------NQIDCFLIPLVGFNKDNYRLGFGKGYYDRYLMQLT---RQQPKIGIAYSFQKGDF-LADPWD 179 (189) T ss_dssp EEECTTCCEECG------GGCCEEEEECSEECTTCCEECCSSCHHHHHGGGCC---SCCCEEEEECGGGBCCC-CCCTTS T ss_pred EECCCCCCCCCC------CCCCEEECCHHHEECCCEECCCCCCHHHHHHHHCC---CCCCEEEEEEHHHCCCC-CCCCCC T ss_conf 430124687898------76676971357340577556779666889998668---88868999724515588-996012 Q ss_pred CCCCEEECCC Q ss_conf 5115899898 Q gi|254780658|r 91 IRLHAILTES 100 (113) Q Consensus 91 ~~ld~iiTe~ 100 (113) ++||+||||+ T Consensus 180 i~ld~iiTEk 189 (189) T 1sbq_A 180 VQLDLIINDE 189 (189) T ss_dssp CCCSEEEECC T ss_pred CCCCEEECCC T ss_conf 3479895889 No 7 >2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 Probab=31.08 E-value=14 Score=17.63 Aligned_cols=53 Identities=11% Similarity=-0.038 Sum_probs=27.8 Q ss_pred CCCCCEEEEHHH-HHCCCHHHHCCCCEEHHHHHHHHHHCCCCEEEEEEECHHHEEC Q ss_conf 114667740142-2111001112486037899988874499837999832232424 Q gi|254780658|r 28 EMSPDLILMPLI-AFDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDMQETS 82 (113) Q Consensus 28 ~~~~DlilVP~l-afD~~G~RLG~GgGyYDR~l~~~~~~~~~~~~igla~~~q~~~ 82 (113) ..+.|.+|+|++ +|+..-.-+=.-.|..|........ ...+.+|+|.-.|+.. T Consensus 41 l~~~d~lILPG~gs~~~~~~~~~~~~~~~~~i~~~~~~--~~~PilGIClG~QlL~ 94 (227) T 2abw_A 41 LGLCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIHV--LKKPIWGTCAGCILLS 94 (227) T ss_dssp HHTCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHHT--SCCCEEEETHHHHHTE T ss_pred HHCCCEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHH--CCCCEEEECHHHHHHH T ss_conf 82799999989965999999998766777899999985--3991798505688998 No 8 >1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, allosteric, evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* Probab=29.12 E-value=13 Score=17.71 Aligned_cols=30 Identities=20% Similarity=0.517 Sum_probs=20.1 Q ss_pred HHHHCCCCEEHHHHHHHHHHCCCCEEEEEEECHH Q ss_conf 0111248603789998887449983799983223 Q gi|254780658|r 45 GNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDM 78 (113) Q Consensus 45 G~RLG~GgGyYDR~l~~~~~~~~~~~~igla~~~ 78 (113) +.-|+ |||-||..++.+. .....+|.|+.. T Consensus 298 ~~~i~-~GGRYD~L~~~fg---~~~pAvGfai~l 327 (344) T 1z7m_A 298 NQPIL-SGGRYDQLLSNFQ---EEAFAIGFCCHM 327 (344) T ss_dssp EEEEE-EEEECHHHHHTSS---SCCCCEEEEEEH T ss_pred CCEEE-ECCCHHHHHHHHC---CCCCEEEEEEEH T ss_conf 98378-7802878999619---998779999679 No 9 >2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase; HET: 5RP; 2.90A {Thermotoga maritima} Probab=25.43 E-value=29 Score=15.89 Aligned_cols=52 Identities=8% Similarity=-0.125 Sum_probs=31.4 Q ss_pred CCCCCEEEEHHHHHCCCHHHHCCCCEEHHHHHHHHHHCCCCEEEEEEECHHHEECC Q ss_conf 11466774014221110011124860378999888744998379998322324247 Q gi|254780658|r 28 EMSPDLILMPLIAFDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDMQETSC 83 (113) Q Consensus 28 ~~~~DlilVP~lafD~~G~RLG~GgGyYDR~l~~~~~~~~~~~~igla~~~q~~~~ 83 (113) ..+.|.+|+|+-+|+.... .=.-.|..+.....++. ..+.+|+|.=.|+..+ T Consensus 55 l~~~D~lILPGG~~~~~~~-~l~~~~~~~~i~~~~~~---~kPiLGIClG~QlL~~ 106 (208) T 2iss_D 55 LDMVDGLILPGGESTTMIR-ILKEMDMDEKLVERINN---GLPVFATCAGVILLAK 106 (208) T ss_dssp GGGCSEEEECSSCHHHHHH-HHHHTTCHHHHHHHHHT---TCCEEEETHHHHHHEE T ss_pred HHCCCEEEECCCCHHHHHH-HHHHCCCHHHHHHHHHC---CCCEEEECCCHHHHEE T ss_conf 8259999999999899999-99986988999999986---9988998724132300 No 10 >3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} Probab=23.21 E-value=22 Score=16.50 Aligned_cols=31 Identities=16% Similarity=0.398 Sum_probs=21.3 Q ss_pred HHHHCCCCEEHHHHHHHHHHCCCCEEEEEEECHHH Q ss_conf 01112486037899988874499837999832232 Q gi|254780658|r 45 GNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDMQ 79 (113) Q Consensus 45 G~RLG~GgGyYDR~l~~~~~~~~~~~~igla~~~q 79 (113) |..+ -|||=||..++.+. .....+|.|+..- T Consensus 291 g~~I-~~GGRYD~L~~~fg---~~~pAvGfai~ld 321 (400) T 3od1_A 291 GVPL-CSGGRYDELLSKFH---RPAQATGFGVRID 321 (400) T ss_dssp SSEE-EEEEECTTHHHHTT---CCCCEEEEEEEHH T ss_pred CCEE-EECCCHHHHHHHCC---CCCCEEEEEEEHH T ss_conf 8857-73534478899619---9987799998899 No 11 >2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus HB8} Probab=22.31 E-value=39 Score=15.20 Aligned_cols=52 Identities=12% Similarity=-0.026 Sum_probs=31.6 Q ss_pred CCCCCEEEEHHHHHCCCHHHHCCCCEEHHHHHHHHHHCCCCEEEEEEECHHHEEC Q ss_conf 1146677401422111001112486037899988874499837999832232424 Q gi|254780658|r 28 EMSPDLILMPLIAFDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDMQETS 82 (113) Q Consensus 28 ~~~~DlilVP~lafD~~G~RLG~GgGyYDR~l~~~~~~~~~~~~igla~~~q~~~ 82 (113) ..+.|.+|+|+.+++.....+-.- +..+..+.... ..+.+.+|+|+=.|+.. T Consensus 37 l~~~d~lIlPGG~~~~~~~~l~~~-~~~~~~~~~~~--~~~~PiLGIClG~QlL~ 88 (191) T 2ywd_A 37 LEGLKALIVPGGESTTIGKLAREY-GIEDEVRKRVE--EGSLALFGTCAGAIWLA 88 (191) T ss_dssp GTTCSEEEECSSCHHHHHHHHHHT-THHHHHHHHHH--TTCCEEEEETHHHHHHE T ss_pred HCCCCEEEECCCCHHHHHHHHHHC-CCHHHHHHHHH--HCCCCEEEECHHHEEEE T ss_conf 607898999899668999987775-78689999998--47996799756670000 No 12 >1x9p_A Penton protein; jellyroll domain, anti-parallel beta sheet, insertion domain, virus like particle; HET: C15; 3.30A {Human adenovirus 2} PDB: 1x9t_A* 2bld_A 2c9f_A 2c9g_A 2c6s_A Probab=21.09 E-value=20 Score=16.79 Aligned_cols=22 Identities=32% Similarity=0.682 Sum_probs=16.8 Q ss_pred CCCCCCEEEEHHHHHCCCHHHH Q ss_conf 6114667740142211100111 Q gi|254780658|r 27 KEMSPDLILMPLIAFDLKGNRI 48 (113) Q Consensus 27 ~~~~~DlilVP~lafD~~G~RL 48 (113) +.-.||++|.|+.|+|=.-.|| T Consensus 186 eafHPDIVLLPGCgVDFT~SRL 207 (523) T 1x9p_A 186 EAFHPDIILLPGCGVDFTHSRL 207 (523) T ss_dssp CBCSCCCEECTTCEEECTTCTH T ss_pred CCCCCCEEECCCCCCCCCHHHH T ss_conf 3447877862785203617776 No 13 >1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A Probab=20.13 E-value=42 Score=15.04 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=28.7 Q ss_pred CCCCCEEEEHHHH-HCCCHHHHCCCCEEHHHHHHHHHHCCCCEEEEEEECHHHEECC Q ss_conf 1146677401422-1110011124860378999888744998379998322324247 Q gi|254780658|r 28 EMSPDLILMPLIA-FDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDMQETSC 83 (113) Q Consensus 28 ~~~~DlilVP~la-fD~~G~RLG~GgGyYDR~l~~~~~~~~~~~~igla~~~q~~~~ 83 (113) ....|.+++|+++ |+..-..| .=.|..+.....++ .+.+..|+|+-.|++.+ T Consensus 40 ~~~~D~iIlPG~G~~~~~~~~l-~~~~l~~~I~~~~~---~~~PiLGIClG~QlL~~ 92 (201) T 1gpw_B 40 NDLYDLLFIPGVGHFGEGMRRL-RENDLIDFVRKHVE---DERYVVGVCLGMQLLFE 92 (201) T ss_dssp SSCCSEEEECCCSCSHHHHHHH-HHTTCHHHHHHHHH---TTCEEEEETHHHHTTSS T ss_pred HCCCCEEEECCCCCHHHHHHHH-HHCCCHHHHHHHHH---CCCCEEEEEEEEEEEEE T ss_conf 6028979998987589999996-56587889999997---69988999861777510 Done!