RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780658|ref|YP_003065071.1| 5-formyltetrahydrofolate
cyclo-ligase [Candidatus Liberibacter asiaticus str. psy62]
(113 letters)
>gnl|CDD|30561 COG0212, COG0212, 5-formyltetrahydrofolate cyclo-ligase [Coenzyme
metabolism].
Length = 191
Score = 89.6 bits (222), Expect = 2e-19
Identities = 42/111 (37%), Positives = 64/111 (57%), Gaps = 7/111 (6%)
Query: 1 MIFRQY--ENPTDLVKSAVGTLSPPSYAKEMSP---DLILMPLIAFDLKGNRIGYGRGYY 55
++F +Y + L+K+ G L P Y +++ P DL+L+PL+AFD +G R+GYG GYY
Sbjct: 83 LLFLRYIPDPLQPLIKNRFGILEPGEYGRKIPPPEIDLVLVPLVAFDKQGYRLGYGGGYY 142
Query: 56 DRAIADIRLEGKNPYLLGIAFDMQETSCIQAEATDIRLHAILTESRFSQFS 106
DR +A L G+ +GIA+D Q + E D+ L AI+TE +
Sbjct: 143 DRYLA--NLRGRKTPTVGIAYDCQLVDHLPREPHDVPLDAIVTEEGVIRCL 191
>gnl|CDD|110784 pfam01812, 5-FTHF_cyc-lig, 5-formyltetrahydrofolate cyclo-ligase
family. 5-formyltetrahydrofolate cyclo-ligase or
methenyl-THF synthetase EC:6.3.3.2 catalyses the
interchange of 5-formyltetrahydrofolate (5-FTHF) to
5-10-methenyltetrahydrofolate, this requires ATP and
Mg2+. 5-FTHF is used in chemotherapy where it is
clinically known as Leucovorin.
Length = 182
Score = 87.4 bits (217), Expect = 8e-19
Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 3 FRQYENPTDLVKSAVGTLSPPSYAKEMSP----DLILMPLIAFDLKGNRIGYGRGYYDRA 58
Y T L G P + DL+L+P +AFD +G R+G G GYYDR
Sbjct: 84 ITPYYPETGLPSGPYGLPEPIEEEQRELALNQIDLVLVPGVAFDRQGYRLGRGGGYYDRY 143
Query: 59 IADIRLEGKNPYLLGIAFDMQETSCIQAEATDIRLHAILTE 99
+A RL+G P +G+A+D Q + E D+ + I+TE
Sbjct: 144 LA--RLQGHGPLTVGLAYDEQLVERLPQEPHDVPVDEIVTE 182
>gnl|CDD|38303 KOG3093, KOG3093, KOG3093, 5-formyltetrahydrofolate cyclo-ligase
[Coenzyme transport and metabolism].
Length = 200
Score = 67.6 bits (165), Expect = 6e-13
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 32 DLILMPLIAFDLKGNRIGYGRGYYDRAIA--DIRLEGKNPYLLGIAFDMQETSCIQAEAT 89
DLI++P +AFD KG R+G+G+GYYD + I + P L+G+ Q S I E
Sbjct: 130 DLIIVPGVAFDRKGARLGHGKGYYDDFLKRYQIHAPEQKPLLVGLCLKEQILSEIPVEEH 189
Query: 90 DIRLHAILTES 100
D++L A++TE
Sbjct: 190 DVKLDAVVTED 200
>gnl|CDD|39611 KOG4410, KOG4410, KOG4410, 5-formyltetrahydrofolate cyclo-ligase
[Coenzyme transport and metabolism].
Length = 396
Score = 28.9 bits (64), Expect = 0.36
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 32 DLILMPLIAFDLKGNRIGYGRGYYDRAIADIRLEG---KNPYLLGIAFDMQETSCIQAEA 88
DL+++ +A +G RIG G G+ D + G ++ I D Q I E
Sbjct: 159 DLVVIGSVAVSREGYRIGKGEGFADLEYGMLIEMGAITPKTPVVTIVHDCQVVDSIPPEL 218
Query: 89 T---DIRLHAILTESR 101
D + I T +R
Sbjct: 219 FQKHDTPVDIIATPTR 234
>gnl|CDD|34072 COG4354, COG4354, Predicted bile acid beta-glucosidase
[Carbohydrate transport and metabolism].
Length = 721
Score = 28.4 bits (63), Expect = 0.45
Identities = 17/87 (19%), Positives = 27/87 (31%), Gaps = 26/87 (29%)
Query: 14 KSAVGTLSPPSYAKEMSPDLILM--------------------------PLIAFDLKGNR 47
K GT P+ K++ PD +L+ L FD +
Sbjct: 428 KPIYGTYQDPNLWKDLGPDFVLLVYRDFKFTNDREFLKEVYPVIVEAIDWLKRFDQDNDG 487
Query: 48 IGYGRGYYDRAIADIRLEGKNPYLLGI 74
I G D R++G + Y +
Sbjct: 488 IPENSGAMDNTFDATRIQGHSSYCGSL 514
>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine
Kinase, Never In Mitosis gene A-related kinase.
Serine/Threonine Kinases (STKs), Never In Mitosis gene A
(NIMA)-related kinase (Nek) family, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. The Nek family is
composed of 11 different mammalian members (Nek1-11)
with similarity to the catalytic domain of Aspergillus
nidulans NIMA kinase, the founding member of the Nek
family which was identified in a screen for cell cycle
mutants that were prevented from entering mitosis. Neks
contain a conserved N-terminal catalytic domain and a
more divergent C-terminal regulatory region of various
sizes and structures. They are involved in the
regulation of downstream processes following the
activation of Cdc2, and many of their functions are cell
cycle-related. They play critical roles in microtubule
dynamics during ciliogenesis and mitosis.
Length = 258
Score = 25.5 bits (57), Expect = 3.3
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 2 IFRQYENPTDLVKSAVGTLSPPSYAKEMSPDLI 34
I + + DL K+ VGT P Y +SP+L
Sbjct: 149 ISKVLSSTVDLAKTVVGT---PYY---LSPELC 175
>gnl|CDD|144162 pfam00463, ICL, Isocitrate lyase family.
Length = 526
Score = 24.5 bits (53), Expect = 7.1
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 21 SPPSYAKEMSPDLILMPLIAFDLKGNRIGYGRGYYDRAIADIRLEGKNP 69
S S + E PDL P+ K + + + ++DR + RLE
Sbjct: 90 STASTSNEPGPDLADYPMDTVPNKVEHLFFAQLFHDRKQREERLEMPKE 138
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.321 0.138 0.396
Gapped
Lambda K H
0.267 0.0712 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,388,506
Number of extensions: 66752
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 10
Length of query: 113
Length of database: 6,263,737
Length adjustment: 79
Effective length of query: 34
Effective length of database: 4,556,626
Effective search space: 154925284
Effective search space used: 154925284
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)