RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780658|ref|YP_003065071.1| 5-formyltetrahydrofolate
cyclo-ligase [Candidatus Liberibacter asiaticus str. psy62]
         (113 letters)



>d1soua_ c.124.1.6 (A:) Hypothetical protein aq_1731 {Aquifex
           aeolicus [TaxId: 63363]}
          Length = 194

 Score = 71.4 bits (174), Expect = 2e-14
 Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 7/107 (6%)

Query: 1   MIFRQYENPTDLVKSAVGTLSPPSYAKE--MSPDLILMPLIAFDLKGNRIGYGRGYYDRA 58
           +   +  +P  L   A G + P    +      D I +P +AFDL+G R+G+G+GYYDR 
Sbjct: 80  ISLYRVHSPACLGVGAFGIMEPVEGERVNPEDVDFIAVPGVAFDLEGYRLGFGKGYYDRL 139

Query: 59  IADIRLEGKNPYLLGIAFDMQETSCIQAEATDIRLHAILTESRFSQF 105
           +            +G+A+  Q    +  +A DI +  ++TE    + 
Sbjct: 140 LKR-----VKGLKVGVAYSFQVFERLPRDAWDIPVDVLVTEKNVRRL 181


>d1wkca_ c.124.1.6 (A:) Hypothetical protein TTHA1611 {Thermus
           thermophilus [TaxId: 274]}
          Length = 175

 Score = 69.5 bits (169), Expect = 7e-14
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 31  PDLILMPLIAFDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDMQETSCIQAEATD 90
            DL+++P +AFD +G R+G+G+G+YDR + ++R        +G+         +  +  D
Sbjct: 103 LDLVVVPGLAFDREGYRLGHGQGFYDRFLKEVR-----AATVGVVPQALLFPALPRDPWD 157

Query: 91  IRLHAILTESRFSQF 105
           + +  + TE+     
Sbjct: 158 VPVDHLATEAGVEAV 172


>d1sbqa_ c.124.1.6 (A:) 5,10-methenyltetrahydrofolate synthetase
           homolog MPN348 {Mycoplasma pneumoniae [TaxId: 2104]}
          Length = 164

 Score = 66.4 bits (161), Expect = 6e-13
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 29  MSPDLILMPLIAFDLKGNRIGYGRGYYDRAIADIRLEGKNPYLLGIAFDMQETSCIQAEA 88
              D  L+PL+ F+    R+G+G+GYYDR +  +    +    +GIA+  Q+   +  + 
Sbjct: 97  NQIDCFLIPLVGFNKDNYRLGFGKGYYDRYLMQLT---RQQPKIGIAYSFQKGDFLA-DP 152

Query: 89  TDIRLHAILTE 99
            D++L  I+ +
Sbjct: 153 WDVQLDLIIND 163


>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa
           (Medicago sativa) [TaxId: 3879]}
          Length = 244

 Score = 25.1 bits (54), Expect = 1.7
 Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 5/48 (10%)

Query: 48  IGYGRGYYDRAIADIRLEGKNPYLLGIAFDMQETSCIQAEATDIRLHA 95
           +G G G     I       K P + GI FD+ +        + I    
Sbjct: 88  VGGGSGRNLELIIS-----KYPLIKGINFDLPQVIENAPPLSGIEHVG 130


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.396 

Gapped
Lambda     K      H
   0.267   0.0681    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 418,389
Number of extensions: 17636
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 5
Length of query: 113
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 42
Effective length of database: 1,432,766
Effective search space: 60176172
Effective search space used: 60176172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)