HHsearch alignment for GI: 254780659 and conserved domain: smart00854
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=99.09 E-value=1.9e-08 Score=75.64 Aligned_cols=174 Identities=22% Similarity=0.277 Sum_probs=107.8
Q ss_pred EEEEEEECCCHH-----HHHHHHHHHHHHHHHCCCCEEEECCEECCCCC------------CCCHHHHHHHHHCCCCEEE
Q ss_conf 269997202768-----89999998089888609989999170047886------------7899999999837998999
Q gi|254780659|r 2 RLLFLGDIVGKT-----GRSIVYEMLPRLIRDFQLDFVIANGENSAGGF------------GITEKIFCEMMETGIDVIT 64 (274)
Q Consensus 2 kiLfiGDIvG~~-----Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~------------Git~~~~~~l~~~GvDviT 64 (274)
T Consensus 1 tl~f~GDi~~~~~~~~~~~~~~~~~v~~~~~--~aD~~~~NlE~~i~~~~~~~~~~~~~~f~~~~~~~~~L~~~G~d~~s 78 (239)
T smart00854 1 TLSFVGDVMLGRGVYKADFSPPFAGVKPLLR--AADLAIGNLETPITGSGSPASGKKYPNFRAPPENAAALKAAGFDVVS 78 (239)
T ss_pred CEEEEEEECCCCCCCCCCCHHHHHHHHHHHH--HCCEEEEECCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHCCCCEEE
T ss_conf 9699977614897455783578999999997--49999996402662899878777661202999999999982999899
Q ss_pred ECH-HHHCCC-----CHHHHHHHCCCEEEECCCCCCCCCC--------CEEEEECCCCCEEEEEEEEHHHCC--CCCCC-
Q ss_conf 342-653022-----2047542189389750079888754--------079998489928999996000058--83325-
Q gi|254780659|r 65 TGN-HVWDKR-----EALVFSQRHCKFLRPANYPPNTPGN--------GSGLYCAKNGSNVLVANIMGRVFM--NPLLD- 127 (274)
Q Consensus 65 ~GN-H~wd~k-----ei~~~i~~~~~ilRP~N~p~~~PG~--------G~~i~~~~~g~ki~Vinl~Gr~fM--~~~~d- 127 (274)
T Consensus 79 lANNH~~D~G~~Gl~~Ti~~L~~~-------gi~--~~G~g~~~~~a~~p~~~~-~~g~~va~l~~t~~~~~~~~~~~~~ 148 (239)
T smart00854 79 LANNHSLDYGEEGLLDTLAALDAA-------GIA--HVGAGRNLAEARKPAIVE-VKGIKIALLAYTYGTNNGWAASKDR 148 (239)
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHC-------CCC--CCCCCCCHHHCCCCEEEE-ECCEEEEEEEEECCCCCCCCCCCCC
T ss_conf 317634312089999999999986-------996--158989957737828999-8998999999870778864377899
Q ss_pred ------CHH--HHHHHHHHHCCCCCCCCEEEEECCC------CCHHHHHHHHHHH-CCCEEEEEECCCCCCCCHHHH
Q ss_conf ------989--9999998634136899889996257------6228999999760-895779980697624654564
Q gi|254780659|r 128 ------DPF--RTADKILATCPLKEQADVIVFDFHA------ETTSEKQCFAHFV-DSRASLVVGTHTHIPTADAQI 189 (274)
Q Consensus 128 ------~PF--~~~d~~l~~~~~~~~~~~i~VDfHa------EaTSEK~A~g~~l-DGrVsaVvGTHTHV~TaD~rI 189 (274)
T Consensus 149 ~~~~~~~~~~~~~i~~~i~~--~k~~~D~vIv~~HwG~E~~~~p~~~q~~~a~~lid~GaD~IiGhHpHv~q~~E~y 223 (239)
T smart00854 149 PGVALLPDLDREKILADIAR--ARKKADVVIVSLHWGVEYQYEPTDEQRELAHALIDAGADVVIGHHPHVLQPIEIY 223 (239)
T ss_pred CCCCCCCCCCHHHHHHHHHH--HHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEE
T ss_conf 87121570179999999998--8527999999930157787799999999999999769999992899878874999