HHsearch alignment of GI: 254780659 and MMDB domain: 2q8u_A_1-281
>2q8u_A (A:1-281) Exonuclease, putative; TM1635, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.20A {Thermotoga maritima MSB8}
Probab=96.92 E-value=0.0093 Score=38.32 Aligned_cols=191 Identities=12% Similarity=0.061 Sum_probs=100.5
Q ss_pred CEEEEEEECC----------CHHHHHHH---HHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHHH------CCCC
Q ss_conf 9269997202----------76889999---998089888609989999170047886789999999983------7998
Q gi|254780659|r 1 MRLLFLGDIV----------GKTGRSIV---YEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMME------TGID 61 (274)
Q Consensus 1 MkiLfiGDIv----------G~~Gr~~v---~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~~------~GvD 61 (274)
|||++++|+= +..+.... .+.+-+..++.++|||+..|....++.--.....+.+.. .++.
T Consensus 19 ~~i~~isD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (281)
T 2q8u_A 19 LKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRXXRTAP 98 (281)
T ss_dssp EEEEEEECCCBTCEECTTTCCEECHHHHHHHHHHHHHHHHHHTCSEEEEESCSBSCSSCCCHHHHHHHHHHHHHHHHHSC
T ss_pred CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 68899824758985867544156899999999999999997199899989877889998889999988999998415887
Q ss_pred E-EEECHHHHCCC--CHHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCCCC-------CCHHH
Q ss_conf 9-99342653022--20475421893897500798887540799984899289999960000588332-------59899
Q gi|254780659|r 62 V-ITTGNHVWDKR--EALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMNPLL-------DDPFR 131 (274)
Q Consensus 62 v-iT~GNH~wd~k--ei~~~i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~~~~-------d~PF~ 131 (274)
+ ++.|||-+... ....+......-.. ...+.....+. .+...+.+.+...-....... .....
T Consensus 99 ~~~v~GNHD~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (281)
T 2q8u_A 99 VVVLPGNHDWKGLKLFGNFVTSISSDITF------VXSFEPVDVEA-KRGQKVRILPFPYPDESEALRKNEGDFRFFLES 171 (281)
T ss_dssp EEECCC------CHHHHHHHHHHCSSEEE------CCSSSCEEEEC-TTSCEEEEEEECCC-------CCSSHHHHHHHH
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCEE------CCCCCCEEEEE-CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 89955887631134321100012455100------24557568861-048659999614676222223430577899999
Q ss_pred HHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHH-----------HHHCCCEEEEEECCCCCCCCHHHHCCCCEEEEECC
Q ss_conf 9999986341368998899962576228999999-----------76089577998069762465456403672898405
Q gi|254780659|r 132 TADKILATCPLKEQADVIVFDFHAETTSEKQCFA-----------HFVDSRASLVVGTHTHIPTADAQILDGGTGYITDL 200 (274)
Q Consensus 132 ~~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g-----------~~lDGrVsaVvGTHTHV~TaD~rILp~GTayiTDv 200 (274)
.....+... ......+++-.|--..+-..... ......|.+|+.=|+|...- ...+|+.|++-.
T Consensus 172 ~~~~~~~~~--~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vl~GH~H~~~~---~~~~~~~~~~~~ 246 (281)
T 2q8u_A 172 RLNKLYEEA--LKKEDFAIFXGHFTVEGLAGYAGIEQGREIIINRALIPSVVDYAALGHIHSFRE---IQKQPLTIYPGS 246 (281)
T ss_dssp HHHHHHHHH--HTCSSEEEEEEESEETTCC--------CCCEECGGGSCTTSSEEEEESCSSCEE---EEETTEEEECCC
T ss_pred HHHHHHHHH--CCCCCCEEEEEECEECCCCCCCCCCCCCCCCCCHHHHHCCCCEEEECCCCCCCE---ECCCCCEEECCC
T ss_conf 999999863--565675389730122266677853247654553777523662565066666633---068988586489
Q ss_pred CCC
Q ss_conf 601
Q gi|254780659|r 201 GMC 203 (274)
Q Consensus 201 GMt 203 (274)
.++
T Consensus 247 ~~~ 249 (281)
T 2q8u_A 247 LIR 249 (281)
T ss_dssp SSC
T ss_pred CCC
T ss_conf 616