HHsearch results for GI: 254780659 and protein with PDBid: 2q8u_A

>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8}
Probab=94.78  E-value=0.24  Score=28.12  Aligned_cols=175  Identities=14%  Similarity=0.122  Sum_probs=90.2

Q ss_pred             CEEEEEEECC-CHH-------------HHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHH------HCCC
Q ss_conf             9269997202-768-------------8999999808988860998999917004788678999999998------3799
Q gi|254780659|r    1 MRLLFLGDIV-GKT-------------GRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMM------ETGI   60 (274)
Q Consensus         1 MkiLfiGDIv-G~~-------------Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~------~~Gv   60 (274)
                      ||||-+.|+= |+.             -+.++.+.+. .-++.++|+||.-|.-...+.-.+......+.      ..++
T Consensus        19 MkilH~SDlHLG~~~~~~~~~~~~~~~~~~~l~~i~~-~a~~~~~D~vliaGDlf~~~~~~~~~~~~~~~~~~~~l~~~~   97 (336)
T 2q8u_A           19 LKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVE-EAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRTA   97 (336)
T ss_dssp             EEEEEEECCCBTCEECTTTCCEECHHHHHHHHHHHHH-HHHHHTCSEEEEESCSBSCSSCCCHHHHHHHHHHHHHHHHHS
T ss_pred             CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             5898980467998777755415689999999999999-999749999998987777999888999999999999874289


Q ss_pred             CEEE-ECHHHHCCCC-HHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCC--CCCCCHHH-H---
Q ss_conf             8999-3426530222-0475421893897500798887540799984899289999960000588--33259899-9---
Q gi|254780659|r   61 DVIT-TGNHVWDKRE-ALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMN--PLLDDPFR-T---  132 (274)
Q Consensus        61 DviT-~GNH~wd~ke-i~~~i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~--~~~d~PF~-~---  132 (274)
                      .++. .|||=+.... ....+......+.-.+     ...-+.+ ....|.++.++.+.-.....  ......+. .   
T Consensus        98 ~v~~i~GNHD~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (336)
T 2q8u_A           98 PVVVLPGNHDWKGLKLFGNFVTSISSDITFVM-----SFEPVDV-EAKRGQKVRILPFPYPDESEALRKNEGDFRFFLES  171 (336)
T ss_dssp             CEEECCC------CHHHHHHHHHHCSSEEECC-----SSSCEEE-ECTTSCEEEEEEECCC-------CCSSHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHCCHHHHHHCCCCCEECC-----CCCCEEE-ECCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             78994576464100011002221045500114-----5565688-70279669994366643000123330678899999


Q ss_pred             -HHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHH-----------HHCCCEEEEEECCCCCCC
Q ss_conf             -9999863413689988999625762289999997-----------608957799806976246
Q gi|254780659|r  133 -ADKILATCPLKEQADVIVFDFHAETTSEKQCFAH-----------FVDSRASLVVGTHTHIPT  184 (274)
Q Consensus       133 -~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~-----------~lDGrVsaVvGTHTHV~T  184 (274)
                       ..+++++.  ....+..++-.|....+-+...+.           .+...+..|+--|.|-+.
T Consensus       172 ~l~~~~~~~--~~~~~~~I~~~H~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~GH~H~~~  233 (336)
T 2q8u_A          172 RLNKLYEEA--LKKEDFAIFMGHFTVEGLAGYAGIEQGREIIINRALIPSVVDYAALGHIHSFR  233 (336)
T ss_dssp             HHHHHHHHH--HTCSSEEEEEEESEETTCC--------CCCEECGGGSCTTSSEEEEESCSSCE
T ss_pred             HHHHHHHHH--CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEECCCCCCE
T ss_conf             999999873--26466539987542157666675223765455166631386289927775755