HHsearch results for GI: 254780659 and protein with PDBid: 2q8u_A
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8}
Probab=94.78 E-value=0.24 Score=28.12 Aligned_cols=175 Identities=14% Similarity=0.122 Sum_probs=90.2
Q ss_pred CEEEEEEECC-CHH-------------HHHHHHHHHHHHHHHCCCCEEEECCEECCCCCCCCHHHHHHHH------HCCC
Q ss_conf 9269997202-768-------------8999999808988860998999917004788678999999998------3799
Q gi|254780659|r 1 MRLLFLGDIV-GKT-------------GRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMM------ETGI 60 (274)
Q Consensus 1 MkiLfiGDIv-G~~-------------Gr~~v~~~Lp~l~~~~~~DfvIaNgENaa~G~Git~~~~~~l~------~~Gv 60 (274)
||||-+.|+= |+. -+.++.+.+. .-++.++|+||.-|.-...+.-.+......+. ..++
T Consensus 19 MkilH~SDlHLG~~~~~~~~~~~~~~~~~~~l~~i~~-~a~~~~~D~vliaGDlf~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (336)
T 2q8u_A 19 LKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVE-EAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRTA 97 (336)
T ss_dssp EEEEEEECCCBTCEECTTTCCEECHHHHHHHHHHHHH-HHHHHTCSEEEEESCSBSCSSCCCHHHHHHHHHHHHHHHHHS
T ss_pred CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 5898980467998777755415689999999999999-999749999998987777999888999999999999874289
Q ss_pred CEEE-ECHHHHCCCC-HHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCC--CCCCCHHH-H---
Q ss_conf 8999-3426530222-0475421893897500798887540799984899289999960000588--33259899-9---
Q gi|254780659|r 61 DVIT-TGNHVWDKRE-ALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRVFMN--PLLDDPFR-T--- 132 (274)
Q Consensus 61 DviT-~GNH~wd~ke-i~~~i~~~~~ilRP~N~p~~~PG~G~~i~~~~~g~ki~Vinl~Gr~fM~--~~~d~PF~-~--- 132 (274)
.++. .|||=+.... ....+......+.-.+ ...-+.+ ....|.++.++.+.-..... ......+. .
T Consensus 98 ~v~~i~GNHD~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (336)
T 2q8u_A 98 PVVVLPGNHDWKGLKLFGNFVTSISSDITFVM-----SFEPVDV-EAKRGQKVRILPFPYPDESEALRKNEGDFRFFLES 171 (336)
T ss_dssp CEEECCC------CHHHHHHHHHHCSSEEECC-----SSSCEEE-ECTTSCEEEEEEECCC-------CCSSHHHHHHHH
T ss_pred CEEEECCCCCCHHHHCCHHHHHHCCCCCEECC-----CCCCEEE-ECCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 78994576464100011002221045500114-----5565688-70279669994366643000123330678899999
Q ss_pred -HHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHH-----------HHCCCEEEEEECCCCCCC
Q ss_conf -9999863413689988999625762289999997-----------608957799806976246
Q gi|254780659|r 133 -ADKILATCPLKEQADVIVFDFHAETTSEKQCFAH-----------FVDSRASLVVGTHTHIPT 184 (274)
Q Consensus 133 -~d~~l~~~~~~~~~~~i~VDfHaEaTSEK~A~g~-----------~lDGrVsaVvGTHTHV~T 184 (274)
..+++++. ....+..++-.|....+-+...+. .+...+..|+--|.|-+.
T Consensus 172 ~l~~~~~~~--~~~~~~~I~~~H~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~GH~H~~~ 233 (336)
T 2q8u_A 172 RLNKLYEEA--LKKEDFAIFMGHFTVEGLAGYAGIEQGREIIINRALIPSVVDYAALGHIHSFR 233 (336)
T ss_dssp HHHHHHHHH--HTCSSEEEEEEESEETTCC--------CCCEECGGGSCTTSSEEEEESCSSCE
T ss_pred HHHHHHHHH--CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEECCCCCCE
T ss_conf 999999873--26466539987542157666675223765455166631386289927775755