RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780659|ref|YP_003065072.1| hypothetical protein
CLIBASIA_02730 [Candidatus Liberibacter asiaticus str. psy62]
(274 letters)
>1t71_A Phosphatase, conserved; crystal, X-RAY crystallography, structural
genomics, berkeley structural genomics center, BSGC,
PSI; 2.10A {Mycoplasma pneumoniae M129} SCOP: d.159.1.9
Length = 281
Score = 294 bits (754), Expect = 1e-80
Identities = 87/266 (32%), Positives = 132/266 (49%), Gaps = 10/266 (3%)
Query: 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGI 60
++ +FLGD+ GK GR+I+ L +L +Q D VI N EN+ G G++ K + + E G+
Sbjct: 5 IKFIFLGDVYGKAGRNIIKNNLAQLKSKYQADLVIVNAENTTHGKGLSLKHYEFLKEAGV 64
Query: 61 DVITTGNHVWDKREALVFSQRHCKFLRPANYPPN----TPGNGSGLYCAKNGSNVLVANI 116
+ IT GNH W ++ L +RP N + G GS ++ + +
Sbjct: 65 NYITMGNHTWFQKLDLAVVINKKDLVRPLNLDTSFAFHNLGQGSLVFEFNKAKIRITNLL 124
Query: 117 MGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVV 176
V + +PF+ +++ K D+ + DFHAETTSEK F D + +
Sbjct: 125 GTSVPLPFKTTNPFKVLKELIL----KRDCDLHIVDFHAETTSEKNAFCMAFDGYVTTIF 180
Query: 177 GTHTHIPTADAQILDGGTGYITDLGMCGD-YNSSIGLDKEEPINRFITQIPRNRFVIANG 235
GTHTH+P+AD +I G+ YITD+GMCG + S IG + E+ I F F ++
Sbjct: 181 GTHTHVPSADLRITPKGSAYITDVGMCGPGFGSVIGANPEQSIRLFCAGSRE-HFEVSKC 239
Query: 236 PATLCGICAEISDVTGLAEKIAPIRI 261
A L G+ E+ T K IRI
Sbjct: 240 GAQLNGVFFEVDVNTKKVIKTEAIRI 265
>2z06_A Putative uncharacterized protein TTHA0625; metal binding protein,
structural genomics, NPPSFA; 2.20A {Thermus thermophilus
HB8} SCOP: d.159.1.10 PDB: 2cv9_A
Length = 252
Score = 285 bits (731), Expect = 7e-78
Identities = 108/262 (41%), Positives = 150/262 (57%), Gaps = 12/262 (4%)
Query: 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGI 60
MR+LF+GD++ + G V LP + + D VIANGEN+A G G+ + + + E G+
Sbjct: 1 MRVLFIGDVMAEPGLRAVGLHLPDIRD--RYDLVIANGENAARGKGLDRRSYRLLREAGV 58
Query: 61 DVITTGNHVWDKREALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRV 120
D+++ GNH WD +E +RP NYPP TPG G G ++L +MGR+
Sbjct: 59 DLVSLGNHAWDHKEVYAL-LESEPVVRPLNYPPGTPGKGFW-RLEVGGESLLFVQVMGRI 116
Query: 121 FMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTHT 180
FM+PL DDPFR D++L +E+AD ++ + HAE TSEK AH++D RAS V+GTHT
Sbjct: 117 FMDPL-DDPFRALDRLL----EEEKADYVLVEVHAEATSEKMALAHYLDGRASAVLGTHT 171
Query: 181 HIPTADAQILDGGTGYITDLGMCGDYNSSIGLDKEEPINRFITQIPRNRFVIANGPATLC 240
H+PT DA L GT Y TD+GM G Y+S IG + E + RF+T P+ F A G A
Sbjct: 172 HVPTLDATRLPKGTLYQTDVGMTGTYHSIIGGEVETFLARFLTGRPQ-PFRAAQGKARFH 230
Query: 241 GICAEISDVTGLAEKIAPIRIG 262
E+ G I+P
Sbjct: 231 AT--ELVFEGGRPVAISPYVWE 250
>1t70_A Phosphatase; crystal, X-RAY crystallography, structural genomics,
berkeley structural genomics center, BSGC, PSI; 2.30A
{Deinococcus radiodurans R1} SCOP: d.159.1.9
Length = 255
Score = 284 bits (727), Expect = 2e-77
Identities = 101/262 (38%), Positives = 138/262 (52%), Gaps = 11/262 (4%)
Query: 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGI 60
MR+LF+GD+ G+ GR ++ LP + Q DFVI N ENSAGGFG+ +E G
Sbjct: 1 MRVLFIGDVFGQPGRRVLQNHLPTIRP--QFDFVIVNMENSAGGFGMHRDAARGALEAGA 58
Query: 61 DVITTGNHVWDKREALVF-SQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGR 119
+T GNH W ++ S+ +RP NY NG + V N++GR
Sbjct: 59 GCLTLGNHAWHHKDIYPMLSEDTYPIVRPLNYADPGTPGVGWRTFDVNGEKLTVVNLLGR 118
Query: 120 VFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTH 179
VFM + D+PFRT D +L ++ + DFHAE TSEK+ + R + V+GTH
Sbjct: 119 VFMEAV-DNPFRTMDALL----ERDDLGTVFVDFHAEATSEKEAMGWHLAGRVAAVIGTH 173
Query: 180 THIPTADAQILDGGTGYITDLGMCGDYNSSIGLDKEEPINRFITQIPRNRFVIANGPATL 239
TH+PTAD +IL GGT Y TD G G ++S IG E P+ RF+T+ P R+ +A G A L
Sbjct: 174 THVPTADTRILKGGTAYQTDAGFTGPHDSIIGSAIEGPLQRFLTERPH-RYGVAEGRAEL 232
Query: 240 CGICAEISDVTGLAEKIAPIRI 261
G+ G A R
Sbjct: 233 NGVALHFE--GGKATAAERYRF 252
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 53.0 bits (127), Expect = 7e-08
Identities = 58/325 (17%), Positives = 98/325 (30%), Gaps = 148/325 (45%)
Query: 5 FLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVIT 64
+GD++ + E L LIR A EK+F + G++++
Sbjct: 183 LVGDLIKFSA-----ETLSELIRT----------TLDA------EKVFTQ----GLNILE 217
Query: 65 TGNHVWDKREALVFSQRHCKFLRPANYPPNTPGNG-------S----GL-----YCAKNG 108
W L P NTP S G+ Y
Sbjct: 218 -----W---------------LE---NPSNTPDKDYLLSIPISCPLIGVIQLAHYV---- 250
Query: 109 SNVLVANIMGRVFMNP-LLDDPFRTA----DKILATCPLKEQADVIVFDFHAETTSEKQC 163
+ A ++G P L + A ++ A I AET S
Sbjct: 251 ---VTAKLLG---FTPGELRSYLKGATGHSQGLVT-------AVAI-----AETDS---- 288
Query: 164 FAHFVD-SRASLVV----GTHTH-------IP---TADAQILDGGTGYITDLGMCGDYNS 208
+ F R ++ V G + +P D+ L+ G + M
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS--LENNEGVPSP--ML----- 339
Query: 209 SI-GLDKEEPINRFITQI-----------------PRNRFVIANGPATLCGIC---AEIS 247
SI L +E+ + ++ + +N V++ P +L G+ +
Sbjct: 340 SISNLTQEQ-VQDYVNKTNSHLPAGKQVEISLVNGAKN-LVVSGPPQSLYGLNLTLRKAK 397
Query: 248 DVTGLAEKIAPIRIGPRLSETRPDF 272
+GL + RI P SE + F
Sbjct: 398 APSGLDQS----RI-P-FSERKLKF 416
Score = 36.8 bits (85), Expect = 0.005
Identities = 43/228 (18%), Positives = 65/228 (28%), Gaps = 95/228 (41%)
Query: 6 LGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENS---AG------GFGIT-EKIFCEM 55
+ D V KT LP Q++ + NG + +G G +T K
Sbjct: 349 VQDYVNKTNSH-----LPA---GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP- 399
Query: 56 METGIDVITTGNHV-WDKREALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVA 114
+G+D + + + +R L FS R FL P +P
Sbjct: 400 --SGLD----QSRIPFSER-KLKFSNR---FL-----PVASP------------------ 426
Query: 115 NIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFD--------FHAET------TSE 160
F + LL +D I L + + F+ + S
Sbjct: 427 ------FHSHLLVP---ASDLINKD--LVKNN--VSFNAKDIQIPVYDTFDGSDLRVLSG 473
Query: 161 K------QCFAHF-VDSRASLVVGTHTHIPTADAQILDGGTGYITDLG 201
C V + THI LD G G + LG
Sbjct: 474 SISERIVDCIIRLPVKWETTTQFKA-THI-------LDFGPGGASGLG 513
>3c9f_A 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, protein structure
initiative, PSI-2; 1.90A {Candida albicans SC5314} SCOP:
d.114.1.1 d.159.1.2
Length = 557
Score = 30.4 bits (68), Expect = 0.41
Identities = 30/180 (16%), Positives = 50/180 (27%), Gaps = 29/180 (16%)
Query: 55 MMETGIDVITTGNHVWDKREALVF----SQRHCKFLRPANYPPNTPGNGSGLYCAK---- 106
++ D++T GNH E H + + NG +
Sbjct: 91 FIKQDYDLLTIGNHELYLWENSKQEYETVVNHFQDKYVCSNVDIRLDNGLFVPLGLKYKY 150
Query: 107 -----NGSNVLVANIMG---RVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFH---- 154
G V+ + R + T + LK + D+I+ H
Sbjct: 151 FTTPIRGIRVMAFGFLFDFKRFNSGTRVTPMAETIHEPWFQEALKHEVDLIIIVGHTPIS 210
Query: 155 ---AETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDYNSSIG 211
E Q F G H+HI D + D + + G Y ++G
Sbjct: 211 HNWGEFYQVHQYLRQFFPDTIIQYFGGHSHIR--DFTVFDSLSTGLQ----SGRYCETVG 264
>1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme,
hydrolase, domain movement; HET: ATP; 1.70A {Escherichia
coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A
1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A
Length = 516
Score = 29.5 bits (65), Expect = 0.84
Identities = 25/153 (16%), Positives = 45/153 (29%), Gaps = 24/153 (15%)
Query: 55 MMETGIDVITTGNHVWDK-REALVFSQRHCKF-----------LRPANYPPNTPGNGSGL 102
M G D + GNH +D L ++ KF + P L
Sbjct: 79 MNLVGYDAMAIGNHEFDNPLTVLRQQEKWAKFPLLSANIYQKSTGERLFKPWALFKRQDL 138
Query: 103 YCAKNGSNVLVANIMGRVFMNPLLD--DPFRTADKILATCPLKEQADVIVFDFHAETTSE 160
A G +G ++ P A ++ E+ D+I+ H
Sbjct: 139 KIAVIGLTTDDTAKIGNPEYFTDIEFRKPADEAKLVIQELQQTEKPDIIIAATHMGHYDN 198
Query: 161 KQCFAH----------FVDSRASLVVGTHTHIP 183
+ ++ +++VG H+ P
Sbjct: 199 GEHGSNAPGDVEMARALPAGSLAMIVGGHSQDP 231
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A
{Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A*
3jqp_A*
Length = 316
Score = 28.6 bits (63), Expect = 1.6
Identities = 10/92 (10%), Positives = 21/92 (22%), Gaps = 1/92 (1%)
Query: 111 VLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDS 170
+ +A G L F L + ++ +
Sbjct: 174 IFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIY-YGVYNEDSILYLNELEYF 232
Query: 171 RASLVVGTHTHIPTADAQILDGGTGYITDLGM 202
+ + H + Q D + Y+ D
Sbjct: 233 QKMYPNNINIHYVFSYKQNSDATSFYVQDEIY 264
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP:
d.159.1.5 PDB: 2gju_A
Length = 252
Score = 26.5 bits (57), Expect = 7.1
Identities = 10/87 (11%), Positives = 25/87 (28%), Gaps = 4/87 (4%)
Query: 2 RLLFLGDIVGKTGRSI-VYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGI 60
+ LG+IVG V E++ L + + + + + + +
Sbjct: 36 KYYILGNIVGLFPYPKEVIEVIKDLTKKENVKIIRGKYDQIIAMSDPHATDPGYIDKLEL 95
Query: 61 DVITTGNHVWDKREALVFSQRHCKFLR 87
+ + ++LR
Sbjct: 96 PGHVKKALKFTWEK---LGHEGREYLR 119
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.323 0.141 0.434
Gapped
Lambda K H
0.267 0.0546 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,467,885
Number of extensions: 115328
Number of successful extensions: 311
Number of sequences better than 10.0: 1
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 14
Length of query: 274
Length of database: 5,693,230
Length adjustment: 91
Effective length of query: 183
Effective length of database: 3,487,026
Effective search space: 638125758
Effective search space used: 638125758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.8 bits)