RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780659|ref|YP_003065072.1| hypothetical protein CLIBASIA_02730 [Candidatus Liberibacter asiaticus str. psy62] (274 letters) >1t71_A Phosphatase, conserved; crystal, X-RAY crystallography, structural genomics, berkeley structural genomics center, BSGC, PSI; 2.10A {Mycoplasma pneumoniae M129} SCOP: d.159.1.9 Length = 281 Score = 294 bits (754), Expect = 1e-80 Identities = 87/266 (32%), Positives = 132/266 (49%), Gaps = 10/266 (3%) Query: 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGI 60 ++ +FLGD+ GK GR+I+ L +L +Q D VI N EN+ G G++ K + + E G+ Sbjct: 5 IKFIFLGDVYGKAGRNIIKNNLAQLKSKYQADLVIVNAENTTHGKGLSLKHYEFLKEAGV 64 Query: 61 DVITTGNHVWDKREALVFSQRHCKFLRPANYPPN----TPGNGSGLYCAKNGSNVLVANI 116 + IT GNH W ++ L +RP N + G GS ++ + + Sbjct: 65 NYITMGNHTWFQKLDLAVVINKKDLVRPLNLDTSFAFHNLGQGSLVFEFNKAKIRITNLL 124 Query: 117 MGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVV 176 V + +PF+ +++ K D+ + DFHAETTSEK F D + + Sbjct: 125 GTSVPLPFKTTNPFKVLKELIL----KRDCDLHIVDFHAETTSEKNAFCMAFDGYVTTIF 180 Query: 177 GTHTHIPTADAQILDGGTGYITDLGMCGD-YNSSIGLDKEEPINRFITQIPRNRFVIANG 235 GTHTH+P+AD +I G+ YITD+GMCG + S IG + E+ I F F ++ Sbjct: 181 GTHTHVPSADLRITPKGSAYITDVGMCGPGFGSVIGANPEQSIRLFCAGSRE-HFEVSKC 239 Query: 236 PATLCGICAEISDVTGLAEKIAPIRI 261 A L G+ E+ T K IRI Sbjct: 240 GAQLNGVFFEVDVNTKKVIKTEAIRI 265 >2z06_A Putative uncharacterized protein TTHA0625; metal binding protein, structural genomics, NPPSFA; 2.20A {Thermus thermophilus HB8} SCOP: d.159.1.10 PDB: 2cv9_A Length = 252 Score = 285 bits (731), Expect = 7e-78 Identities = 108/262 (41%), Positives = 150/262 (57%), Gaps = 12/262 (4%) Query: 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGI 60 MR+LF+GD++ + G V LP + + D VIANGEN+A G G+ + + + E G+ Sbjct: 1 MRVLFIGDVMAEPGLRAVGLHLPDIRD--RYDLVIANGENAARGKGLDRRSYRLLREAGV 58 Query: 61 DVITTGNHVWDKREALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRV 120 D+++ GNH WD +E +RP NYPP TPG G G ++L +MGR+ Sbjct: 59 DLVSLGNHAWDHKEVYAL-LESEPVVRPLNYPPGTPGKGFW-RLEVGGESLLFVQVMGRI 116 Query: 121 FMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTHT 180 FM+PL DDPFR D++L +E+AD ++ + HAE TSEK AH++D RAS V+GTHT Sbjct: 117 FMDPL-DDPFRALDRLL----EEEKADYVLVEVHAEATSEKMALAHYLDGRASAVLGTHT 171 Query: 181 HIPTADAQILDGGTGYITDLGMCGDYNSSIGLDKEEPINRFITQIPRNRFVIANGPATLC 240 H+PT DA L GT Y TD+GM G Y+S IG + E + RF+T P+ F A G A Sbjct: 172 HVPTLDATRLPKGTLYQTDVGMTGTYHSIIGGEVETFLARFLTGRPQ-PFRAAQGKARFH 230 Query: 241 GICAEISDVTGLAEKIAPIRIG 262 E+ G I+P Sbjct: 231 AT--ELVFEGGRPVAISPYVWE 250 >1t70_A Phosphatase; crystal, X-RAY crystallography, structural genomics, berkeley structural genomics center, BSGC, PSI; 2.30A {Deinococcus radiodurans R1} SCOP: d.159.1.9 Length = 255 Score = 284 bits (727), Expect = 2e-77 Identities = 101/262 (38%), Positives = 138/262 (52%), Gaps = 11/262 (4%) Query: 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGI 60 MR+LF+GD+ G+ GR ++ LP + Q DFVI N ENSAGGFG+ +E G Sbjct: 1 MRVLFIGDVFGQPGRRVLQNHLPTIRP--QFDFVIVNMENSAGGFGMHRDAARGALEAGA 58 Query: 61 DVITTGNHVWDKREALVF-SQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGR 119 +T GNH W ++ S+ +RP NY NG + V N++GR Sbjct: 59 GCLTLGNHAWHHKDIYPMLSEDTYPIVRPLNYADPGTPGVGWRTFDVNGEKLTVVNLLGR 118 Query: 120 VFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTH 179 VFM + D+PFRT D +L ++ + DFHAE TSEK+ + R + V+GTH Sbjct: 119 VFMEAV-DNPFRTMDALL----ERDDLGTVFVDFHAEATSEKEAMGWHLAGRVAAVIGTH 173 Query: 180 THIPTADAQILDGGTGYITDLGMCGDYNSSIGLDKEEPINRFITQIPRNRFVIANGPATL 239 TH+PTAD +IL GGT Y TD G G ++S IG E P+ RF+T+ P R+ +A G A L Sbjct: 174 THVPTADTRILKGGTAYQTDAGFTGPHDSIIGSAIEGPLQRFLTERPH-RYGVAEGRAEL 232 Query: 240 CGICAEISDVTGLAEKIAPIRI 261 G+ G A R Sbjct: 233 NGVALHFE--GGKATAAERYRF 252 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 53.0 bits (127), Expect = 7e-08 Identities = 58/325 (17%), Positives = 98/325 (30%), Gaps = 148/325 (45%) Query: 5 FLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVIT 64 +GD++ + E L LIR A EK+F + G++++ Sbjct: 183 LVGDLIKFSA-----ETLSELIRT----------TLDA------EKVFTQ----GLNILE 217 Query: 65 TGNHVWDKREALVFSQRHCKFLRPANYPPNTPGNG-------S----GL-----YCAKNG 108 W L P NTP S G+ Y Sbjct: 218 -----W---------------LE---NPSNTPDKDYLLSIPISCPLIGVIQLAHYV---- 250 Query: 109 SNVLVANIMGRVFMNP-LLDDPFRTA----DKILATCPLKEQADVIVFDFHAETTSEKQC 163 + A ++G P L + A ++ A I AET S Sbjct: 251 ---VTAKLLG---FTPGELRSYLKGATGHSQGLVT-------AVAI-----AETDS---- 288 Query: 164 FAHFVD-SRASLVV----GTHTH-------IP---TADAQILDGGTGYITDLGMCGDYNS 208 + F R ++ V G + +P D+ L+ G + M Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS--LENNEGVPSP--ML----- 339 Query: 209 SI-GLDKEEPINRFITQI-----------------PRNRFVIANGPATLCGIC---AEIS 247 SI L +E+ + ++ + +N V++ P +L G+ + Sbjct: 340 SISNLTQEQ-VQDYVNKTNSHLPAGKQVEISLVNGAKN-LVVSGPPQSLYGLNLTLRKAK 397 Query: 248 DVTGLAEKIAPIRIGPRLSETRPDF 272 +GL + RI P SE + F Sbjct: 398 APSGLDQS----RI-P-FSERKLKF 416 Score = 36.8 bits (85), Expect = 0.005 Identities = 43/228 (18%), Positives = 65/228 (28%), Gaps = 95/228 (41%) Query: 6 LGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENS---AG------GFGIT-EKIFCEM 55 + D V KT LP Q++ + NG + +G G +T K Sbjct: 349 VQDYVNKTNSH-----LPA---GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP- 399 Query: 56 METGIDVITTGNHV-WDKREALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVA 114 +G+D + + + +R L FS R FL P +P Sbjct: 400 --SGLD----QSRIPFSER-KLKFSNR---FL-----PVASP------------------ 426 Query: 115 NIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFD--------FHAET------TSE 160 F + LL +D I L + + F+ + S Sbjct: 427 ------FHSHLLVP---ASDLINKD--LVKNN--VSFNAKDIQIPVYDTFDGSDLRVLSG 473 Query: 161 K------QCFAHF-VDSRASLVVGTHTHIPTADAQILDGGTGYITDLG 201 C V + THI LD G G + LG Sbjct: 474 SISERIVDCIIRLPVKWETTTQFKA-THI-------LDFGPGGASGLG 513 >3c9f_A 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, protein structure initiative, PSI-2; 1.90A {Candida albicans SC5314} SCOP: d.114.1.1 d.159.1.2 Length = 557 Score = 30.4 bits (68), Expect = 0.41 Identities = 30/180 (16%), Positives = 50/180 (27%), Gaps = 29/180 (16%) Query: 55 MMETGIDVITTGNHVWDKREALVF----SQRHCKFLRPANYPPNTPGNGSGLYCAK---- 106 ++ D++T GNH E H + + NG + Sbjct: 91 FIKQDYDLLTIGNHELYLWENSKQEYETVVNHFQDKYVCSNVDIRLDNGLFVPLGLKYKY 150 Query: 107 -----NGSNVLVANIMG---RVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFH---- 154 G V+ + R + T + LK + D+I+ H Sbjct: 151 FTTPIRGIRVMAFGFLFDFKRFNSGTRVTPMAETIHEPWFQEALKHEVDLIIIVGHTPIS 210 Query: 155 ---AETTSEKQCFAHFVDSRASLVVGTHTHIPTADAQILDGGTGYITDLGMCGDYNSSIG 211 E Q F G H+HI D + D + + G Y ++G Sbjct: 211 HNWGEFYQVHQYLRQFFPDTIIQYFGGHSHIR--DFTVFDSLSTGLQ----SGRYCETVG 264 >1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme, hydrolase, domain movement; HET: ATP; 1.70A {Escherichia coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A 1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A Length = 516 Score = 29.5 bits (65), Expect = 0.84 Identities = 25/153 (16%), Positives = 45/153 (29%), Gaps = 24/153 (15%) Query: 55 MMETGIDVITTGNHVWDK-REALVFSQRHCKF-----------LRPANYPPNTPGNGSGL 102 M G D + GNH +D L ++ KF + P L Sbjct: 79 MNLVGYDAMAIGNHEFDNPLTVLRQQEKWAKFPLLSANIYQKSTGERLFKPWALFKRQDL 138 Query: 103 YCAKNGSNVLVANIMGRVFMNPLLD--DPFRTADKILATCPLKEQADVIVFDFHAETTSE 160 A G +G ++ P A ++ E+ D+I+ H Sbjct: 139 KIAVIGLTTDDTAKIGNPEYFTDIEFRKPADEAKLVIQELQQTEKPDIIIAATHMGHYDN 198 Query: 161 KQCFAH----------FVDSRASLVVGTHTHIP 183 + ++ +++VG H+ P Sbjct: 199 GEHGSNAPGDVEMARALPAGSLAMIVGGHSQDP 231 >3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A* Length = 316 Score = 28.6 bits (63), Expect = 1.6 Identities = 10/92 (10%), Positives = 21/92 (22%), Gaps = 1/92 (1%) Query: 111 VLVANIMGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDS 170 + +A G L F L + ++ + Sbjct: 174 IFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIY-YGVYNEDSILYLNELEYF 232 Query: 171 RASLVVGTHTHIPTADAQILDGGTGYITDLGM 202 + + H + Q D + Y+ D Sbjct: 233 QKMYPNNINIHYVFSYKQNSDATSFYVQDEIY 264 >1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A Length = 252 Score = 26.5 bits (57), Expect = 7.1 Identities = 10/87 (11%), Positives = 25/87 (28%), Gaps = 4/87 (4%) Query: 2 RLLFLGDIVGKTGRSI-VYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGI 60 + LG+IVG V E++ L + + + + + + + Sbjct: 36 KYYILGNIVGLFPYPKEVIEVIKDLTKKENVKIIRGKYDQIIAMSDPHATDPGYIDKLEL 95 Query: 61 DVITTGNHVWDKREALVFSQRHCKFLR 87 + + ++LR Sbjct: 96 PGHVKKALKFTWEK---LGHEGREYLR 119 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.323 0.141 0.434 Gapped Lambda K H 0.267 0.0546 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,467,885 Number of extensions: 115328 Number of successful extensions: 311 Number of sequences better than 10.0: 1 Number of HSP's gapped: 298 Number of HSP's successfully gapped: 14 Length of query: 274 Length of database: 5,693,230 Length adjustment: 91 Effective length of query: 183 Effective length of database: 3,487,026 Effective search space: 638125758 Effective search space used: 638125758 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 56 (25.8 bits)