RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780659|ref|YP_003065072.1| hypothetical protein
CLIBASIA_02730 [Candidatus Liberibacter asiaticus str. psy62]
(274 letters)
>d1t71a_ d.159.1.9 (A:) Hypothetical protein MPN349 {Mycoplasma
pneumoniae [TaxId: 2104]}
Length = 281
Score = 296 bits (759), Expect = 1e-81
Identities = 89/277 (32%), Positives = 135/277 (48%), Gaps = 14/277 (5%)
Query: 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGI 60
++ +FLGD+ GK GR+I+ L +L +Q D VI N EN+ G G++ K + + E G+
Sbjct: 5 IKFIFLGDVYGKAGRNIIKNNLAQLKSKYQADLVIVNAENTTHGKGLSLKHYEFLKEAGV 64
Query: 61 DVITTGNHVWDKREALVFSQRHCKFLRPANYPPN----TPGNGSGLYCAKNGSNVLVANI 116
+ IT GNH W ++ L +RP N + G GS ++ + +
Sbjct: 65 NYITMGNHTWFQKLDLAVVINKKDLVRPLNLDTSFAFHNLGQGSLVFEFNKAKIRITNLL 124
Query: 117 MGRVFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVV 176
V + +PF+ +++ K D+ + DFHAETTSEK F D + +
Sbjct: 125 GTSVPLPFKTTNPFKVLKELIL----KRDCDLHIVDFHAETTSEKNAFCMAFDGYVTTIF 180
Query: 177 GTHTHIPTADAQILDGGTGYITDLGMCGD-YNSSIGLDKEEPINRFITQIPRNRFVIANG 235
GTHTH+P+AD +I G+ YITD+GMCG + S IG + E+ I F F ++
Sbjct: 181 GTHTHVPSADLRITPKGSAYITDVGMCGPGFGSVIGANPEQSIRLFCAGSRE-HFEVSKC 239
Query: 236 PATLCGICAEISDVTGLAEKIAPIRIGPRLSETRPDF 272
A L G+ E+ T K IRI E P +
Sbjct: 240 GAQLNGVFFEVDVNTKKVIKTEAIRI----VEDDPRY 272
>d2z06a1 d.159.1.10 (A:1-252) Hypothetical protein TTHA0625 {Thermus
thermophilus [TaxId: 274]}
Length = 252
Score = 287 bits (737), Expect = 6e-79
Identities = 108/262 (41%), Positives = 150/262 (57%), Gaps = 12/262 (4%)
Query: 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGI 60
MR+LF+GD++ + G V LP + + D VIANGEN+A G G+ + + + E G+
Sbjct: 1 MRVLFIGDVMAEPGLRAVGLHLPDIRD--RYDLVIANGENAARGKGLDRRSYRLLREAGV 58
Query: 61 DVITTGNHVWDKREALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRV 120
D+++ GNH WD +E +RP NYPP TPG G G ++L +MGR+
Sbjct: 59 DLVSLGNHAWDHKEVYAL-LESEPVVRPLNYPPGTPGKGFW-RLEVGGESLLFVQVMGRI 116
Query: 121 FMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTHT 180
FM+PL DDPFR D++L +E+AD ++ + HAE TSEK AH++D RAS V+GTHT
Sbjct: 117 FMDPL-DDPFRALDRLL----EEEKADYVLVEVHAEATSEKMALAHYLDGRASAVLGTHT 171
Query: 181 HIPTADAQILDGGTGYITDLGMCGDYNSSIGLDKEEPINRFITQIPRNRFVIANGPATLC 240
H+PT DA L GT Y TD+GM G Y+S IG + E + RF+T P+ F A G A
Sbjct: 172 HVPTLDATRLPKGTLYQTDVGMTGTYHSIIGGEVETFLARFLTGRPQ-PFRAAQGKARFH 230
Query: 241 GICAEISDVTGLAEKIAPIRIG 262
E+ G I+P
Sbjct: 231 AT--ELVFEGGRPVAISPYVWE 250
>d1t70a_ d.159.1.9 (A:) Putative phosphatase DR1281 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 255
Score = 285 bits (731), Expect = 3e-78
Identities = 101/262 (38%), Positives = 139/262 (53%), Gaps = 11/262 (4%)
Query: 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGI 60
MR+LF+GD+ G+ GR ++ LP + Q DFVI N ENSAGGFG+ +E G
Sbjct: 1 MRVLFIGDVFGQPGRRVLQNHLPTIRP--QFDFVIVNMENSAGGFGMHRDAARGALEAGA 58
Query: 61 DVITTGNHVWDKREALVF-SQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGR 119
+T GNH W ++ S+ +RP NY NG + V N++GR
Sbjct: 59 GCLTLGNHAWHHKDIYPMLSEDTYPIVRPLNYADPGTPGVGWRTFDVNGEKLTVVNLLGR 118
Query: 120 VFMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTH 179
VFM + D+PFRT D +L ++ + DFHAE TSEK+ + R + V+GTH
Sbjct: 119 VFMEAV-DNPFRTMDALL----ERDDLGTVFVDFHAEATSEKEAMGWHLAGRVAAVIGTH 173
Query: 180 THIPTADAQILDGGTGYITDLGMCGDYNSSIGLDKEEPINRFITQIPRNRFVIANGPATL 239
TH+PTAD +IL GGT Y TD G G ++S IG E P+ RF+T+ P +R+ +A G A L
Sbjct: 174 THVPTADTRILKGGTAYQTDAGFTGPHDSIIGSAIEGPLQRFLTERP-HRYGVAEGRAEL 232
Query: 240 CGICAEISDVTGLAEKIAPIRI 261
G+ G A R
Sbjct: 233 NGVALHFE--GGKATAAERYRF 252
>d1nnwa_ d.159.1.5 (A:) Hypothetical protein PF1291 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 251
Score = 26.2 bits (56), Expect = 2.9
Identities = 21/198 (10%), Positives = 47/198 (23%), Gaps = 16/198 (8%)
Query: 2 RLLFLGDIVGKTGRSI-VYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGI 60
+ LG+IVG V E++ L + + + + + + +
Sbjct: 35 KYYILGNIVGLFPYPKEVIEVIKDLTKKENVKIIRGKYDQIIAMSDPHATDPGYIDKLEL 94
Query: 61 DVITTGNHVWDKREALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVANIMGRV 120
+ + ++LR L G+ V
Sbjct: 95 PGHVKKALKFTWEK---LGHEGREYLRDLPIY---------LVDKIGGNEVFGVYGSPIN 142
Query: 121 FMNPLLDDPFRTADKILATCPLKEQADVIVFDFHAETTSEKQCFAHFVDSRASLVVGTHT 180
+ + T+ P+K+ +IV + +
Sbjct: 143 PFDGEVLAEQPTSYYEAIMRPVKDYEMLIVASPMYPVDAMTRYGRVVCPGSVGF---PPG 199
Query: 181 HIPTADAQILDGGTGYIT 198
A ++D T
Sbjct: 200 KEHKATFALVDVDTLKPK 217
>d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid
phosphoribosyltransferase (Nicotinate-nucleotide
pyrophosphorylase, NadC), C-terminal domain
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 169
Score = 25.9 bits (56), Expect = 4.3
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 46 GITEKIFCEMMETGIDVITTG 66
G++ + ETG+D + G
Sbjct: 134 GLSLQTAATYAETGVDYLAVG 154
>d1z2wa1 d.159.1.7 (A:1-182) Vacuolar protein sorting 29, VPS29
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 182
Score = 25.5 bits (55), Expect = 5.6
Identities = 17/138 (12%), Positives = 45/138 (32%), Gaps = 20/138 (14%)
Query: 1 MRLLFLGDIVGKTGRSIVYEMLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGI 60
M +L LGD+ + + +L+ ++ ++ G T++ + +
Sbjct: 1 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCT------GNLCTKESYDYLKTLAG 54
Query: 61 DVIT-----TGNHVWDKREALVFSQRHCKFLRPANYPPNTPGNGSGLYCAKNGSNVLVA- 114
DV N + +++ + Q + P L + ++L++
Sbjct: 55 DVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISG 114
Query: 115 --------NIMGRVFMNP 124
+ ++NP
Sbjct: 115 HTHKFEAFEHENKFYINP 132
>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid
phosphoribosyltransferase (Nicotinate-nucleotide
pyrophosphorylase, NadC), C-terminal domain {Thermotoga
maritima [TaxId: 2336]}
Length = 170
Score = 25.4 bits (55), Expect = 5.7
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 46 GITEKIFCEMMETGIDVITTG 66
GITE+ +DVI++
Sbjct: 133 GITEENVSLYDFETVDVISSS 153
>d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid
phosphoribosyltransferase (Nicotinate-nucleotide
pyrophosphorylase, NadC), C-terminal domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 167
Score = 25.0 bits (54), Expect = 6.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 46 GITEKIFCEMMETGIDVITTG 66
+T + E ETG+D I+ G
Sbjct: 131 NVTAETLREFAETGVDFISVG 151
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.141 0.434
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,067,484
Number of extensions: 50408
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 11
Length of query: 274
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 190
Effective length of database: 1,254,276
Effective search space: 238312440
Effective search space used: 238312440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.1 bits)