RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780660|ref|YP_003065073.1| hypothetical protein CLIBASIA_02735 [Candidatus Liberibacter asiaticus str. psy62] (244 letters) >gnl|CDD|145061 pfam01709, DUF28, Domain of unknown function DUF28. This domain is found in bacterial and yeast proteins it compromises the entire length or central region of most of the proteins in the family, all of which are hypothetical with no known function. The average length of this domain is approximately 230 amino acids long. Length = 234 Score = 294 bits (756), Expect = 1e-80 Identities = 110/235 (46%), Positives = 151/235 (64%), Gaps = 2/235 (0%) Query: 5 SQFKNIMHRKERKDALKSKIFSKLSREITVSAKLSGQNPLENPRLRLAIQNAKNQSMPKE 64 S++ NI HRK +DA + KIF+KL +EITV+AK+ G +P NPRLRLAI+ AK +MPK+ Sbjct: 1 SKWANIKHRKAAQDAKRGKIFTKLIKEITVAAKMGGPDPEGNPRLRLAIEKAKAANMPKD 60 Query: 65 NIERAIKKA-GSDDLGNYTNIRYEGYGPEGVAIIIEALTDNRNRTASSIRSIFTKANGSL 123 NIERAIKK G D NY IRYEGYGP GVA+I+E LTDNRNRTA+ +R F+K G+L Sbjct: 61 NIERAIKKGSGGLDGENYEEIRYEGYGPGGVAVIVECLTDNRNRTAADVRHAFSKNGGNL 120 Query: 124 GSTGSTTRFFEQIGEIIYHSNIGDSNLAMEVAIESDAFEVLFEDQEYIFYCDFNNVGLTS 183 G +GS + F++ G I++ D + +E A+E+ A +V ED D + Sbjct: 121 GESGSVSYMFDRKGVIVFEKEGVDEDELLEAALEAGAEDVEDEDGSIEVITDPTDFEAVK 180 Query: 184 KKLEEKIGEAQSIKVIWKPLNYIRLSNADKVKSIIKMIENLEDDDDVQSVYSNLE 238 K LEE E +S ++ P N + L + + + + K+I+ LED DDVQ+VY N E Sbjct: 181 KALEEAGLEIESAEITMIPQNTVEL-DEEDAEKLEKLIDALEDLDDVQNVYHNAE 234 >gnl|CDD|30566 COG0217, COG0217, Uncharacterized conserved protein [Function unknown]. Length = 241 Score = 271 bits (694), Expect = 1e-73 Identities = 119/242 (49%), Positives = 160/242 (66%), Gaps = 2/242 (0%) Query: 1 MAGHSQFKNIMHRKERKDALKSKIFSKLSREITVSAKLSGQNPLENPRLRLAIQNAKNQS 60 MAGHS++ NI HRK +DA +SKIF+KL +EITV+AK G +P NPRLR AI+ AK + Sbjct: 1 MAGHSKWANIKHRKAAQDAKRSKIFTKLIKEITVAAKQGGPDPESNPRLRTAIEKAKAAN 60 Query: 61 MPKENIERAIKKA-GSDDLGNYTNIRYEGYGPEGVAIIIEALTDNRNRTASSIRSIFTKA 119 MPK+NIERAIKKA G D NY IRYEGYGP GVAII+EALTDNRNRTAS++RS F K Sbjct: 61 MPKDNIERAIKKASGGKDGANYEEIRYEGYGPGGVAIIVEALTDNRNRTASNVRSAFNKN 120 Query: 120 NGSLGSTGSTTRFFEQIGEIIYHSNIGDSNLAMEVAIESDAFEVLFEDQEYIFYCDFNNV 179 G+LG GS + F++ G I+ N D + +E AIE+ A +V ++ Y + + Sbjct: 121 GGNLGEPGSVSYMFDRKGVIVVEKNEIDEDELLEAAIEAGAEDVEEDEGSIEVYTEPEDF 180 Query: 180 GLTSKKLEEKIGEAQSIKVIWKPLNYIRLSNADKVKSIIKMIENLEDDDDVQSVYSNLEI 239 + LE E +S ++ P N + L + + + + K+I+ LEDDDDVQ+VY N EI Sbjct: 181 NKVKEALEAAGYEIESAELTMIPQNTVEL-DDEDAEKLEKLIDALEDDDDVQNVYHNAEI 239 Query: 240 AD 241 ++ Sbjct: 240 SE 241 >gnl|CDD|38183 KOG2972, KOG2972, KOG2972, Uncharacterized conserved protein [Function unknown]. Length = 276 Score = 133 bits (337), Expect = 3e-32 Identities = 80/249 (32%), Positives = 127/249 (51%), Gaps = 14/249 (5%) Query: 1 MAGHSQFKNIMHRKERKDALKSKIFSKLSREITVSAKLSGQNPLENPRLRLAIQNAKNQS 60 M+GH+++ I H+K D +SK +KLS+ I ++ K G NP N RL +++AK S Sbjct: 29 MSGHNKWSKIKHKKGANDQARSKQINKLSQGIILAVKQGGANPELNMRLATLLESAKKIS 88 Query: 61 MPKENIERAIKKAGSDDLGNYTNIRYEGYGPEGVAIIIEALTDNRNRTASSIRSIFTKAN 120 +PK+ IE AI +A + I YE GP GV +I+EALTDN+NR ASSIRSIF K Sbjct: 89 VPKDGIENAINRASGKEGSAVEFIEYEAMGPSGVGLIVEALTDNKNRAASSIRSIFNKHG 148 Query: 121 GSLGSTGSTTRFFEQIGEIIY------HSNIGDSNLAMEVAIESDAFEVLFEDQE----- 169 G S F++ G ++ ++ + A + A VL D+E Sbjct: 149 G--ASASGVRFLFDKKGVVVNVPPEKRDKDVLNIEAIEAGAEDIVAEPVLEIDEEEEREE 206 Query: 170 YIFYCDFNNVGLTSKKLEEKIGEAQSIKVIWKPLNYIRLSNADKVKSIIKMIENLEDDDD 229 + + +++ + KL K E + + + PL + + K I K+I+ L +++D Sbjct: 207 FKIVTEPSSLNQVAHKLRSKGFEIKDSGLEFIPLEEVEVDVPALEK-IQKLIQALYENED 265 Query: 230 VQSVYSNLE 238 V +Y N+ Sbjct: 266 VMFIYDNIL 274 >gnl|CDD|37605 KOG2394, KOG2394, KOG2394, WD40 protein DMR-N9 [General function prediction only]. Length = 636 Score = 28.1 bits (62), Expect = 2.4 Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 8/91 (8%) Query: 106 NRTASSI----RSIFTKA-NGSLGSTGSTTRFFEQIGEIIYHSNIGDSN-LAMEVAIESD 159 +SI S F A N S GS + HSN + + D Sbjct: 77 TPAGTSISETGSSGFRSALNHSSGSGPNNRALAPVGSNGAPHSNANSGIVTNTNQSGKGD 136 Query: 160 AFEVLFEDQEYIFYCDFNNVGLTSKKLEEKI 190 F ++ + SK ++++ Sbjct: 137 RL--CFNVGRELYVYSYRGAADLSKPIDKRE 165 >gnl|CDD|29474 cd01062, RNase_T2_prok, Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen. Generally, RNases have two distinct binding sites: the primary site (B1 site) and the subsite (B2 site), for nucleotides located at the 5'- and 3'- terminal ends of the sessil bond, respectively. This CD includes the prokaryotic RNase T2 family members.. Length = 184 Score = 27.3 bits (60), Expect = 3.6 Identities = 12/29 (41%), Positives = 13/29 (44%) Query: 101 LTDNRNRTASSIRSIFTKANGSLGSTGST 129 L N TAS IR F KAN L + Sbjct: 117 LAGNIGVTASEIRQAFIKANPGLPPDAVS 145 >gnl|CDD|33421 COG3622, Hfi, Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]. Length = 260 Score = 26.7 bits (59), Expect = 6.0 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 21/79 (26%) Query: 83 NIRY--EGYGPEGVAIIIEALTDNRNRTASSIRSIFTKANGSLGSTGSTTRFFEQIGEI- 139 N+RY + EG+ ++IE L ++ L S +++G Sbjct: 125 NLRYAADLLAAEGIRLLIEPL------------NLRDMPGYFLTSQEQALALIDEVGRPN 172 Query: 140 ------IYHSNIGDSNLAM 152 +YH+ I + NL Sbjct: 173 LFLQLDLYHAQIMEGNLTR 191 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.314 0.132 0.357 Gapped Lambda K H 0.267 0.0867 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 2,694,888 Number of extensions: 134185 Number of successful extensions: 310 Number of sequences better than 10.0: 1 Number of HSP's gapped: 305 Number of HSP's successfully gapped: 17 Length of query: 244 Length of database: 6,263,737 Length adjustment: 91 Effective length of query: 153 Effective length of database: 4,297,318 Effective search space: 657489654 Effective search space used: 657489654 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 56 (25.1 bits)