RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780660|ref|YP_003065073.1| hypothetical protein
CLIBASIA_02735 [Candidatus Liberibacter asiaticus str. psy62]
         (244 letters)



>gnl|CDD|145061 pfam01709, DUF28, Domain of unknown function DUF28.  This domain is
           found in bacterial and yeast proteins it compromises the
           entire length or central region of most of the proteins
           in the family, all of which are hypothetical with no
           known function. The average length of this domain is
           approximately 230 amino acids long.
          Length = 234

 Score =  294 bits (756), Expect = 1e-80
 Identities = 110/235 (46%), Positives = 151/235 (64%), Gaps = 2/235 (0%)

Query: 5   SQFKNIMHRKERKDALKSKIFSKLSREITVSAKLSGQNPLENPRLRLAIQNAKNQSMPKE 64
           S++ NI HRK  +DA + KIF+KL +EITV+AK+ G +P  NPRLRLAI+ AK  +MPK+
Sbjct: 1   SKWANIKHRKAAQDAKRGKIFTKLIKEITVAAKMGGPDPEGNPRLRLAIEKAKAANMPKD 60

Query: 65  NIERAIKKA-GSDDLGNYTNIRYEGYGPEGVAIIIEALTDNRNRTASSIRSIFTKANGSL 123
           NIERAIKK  G  D  NY  IRYEGYGP GVA+I+E LTDNRNRTA+ +R  F+K  G+L
Sbjct: 61  NIERAIKKGSGGLDGENYEEIRYEGYGPGGVAVIVECLTDNRNRTAADVRHAFSKNGGNL 120

Query: 124 GSTGSTTRFFEQIGEIIYHSNIGDSNLAMEVAIESDAFEVLFEDQEYIFYCDFNNVGLTS 183
           G +GS +  F++ G I++     D +  +E A+E+ A +V  ED       D  +     
Sbjct: 121 GESGSVSYMFDRKGVIVFEKEGVDEDELLEAALEAGAEDVEDEDGSIEVITDPTDFEAVK 180

Query: 184 KKLEEKIGEAQSIKVIWKPLNYIRLSNADKVKSIIKMIENLEDDDDVQSVYSNLE 238
           K LEE   E +S ++   P N + L + +  + + K+I+ LED DDVQ+VY N E
Sbjct: 181 KALEEAGLEIESAEITMIPQNTVEL-DEEDAEKLEKLIDALEDLDDVQNVYHNAE 234


>gnl|CDD|30566 COG0217, COG0217, Uncharacterized conserved protein [Function
           unknown].
          Length = 241

 Score =  271 bits (694), Expect = 1e-73
 Identities = 119/242 (49%), Positives = 160/242 (66%), Gaps = 2/242 (0%)

Query: 1   MAGHSQFKNIMHRKERKDALKSKIFSKLSREITVSAKLSGQNPLENPRLRLAIQNAKNQS 60
           MAGHS++ NI HRK  +DA +SKIF+KL +EITV+AK  G +P  NPRLR AI+ AK  +
Sbjct: 1   MAGHSKWANIKHRKAAQDAKRSKIFTKLIKEITVAAKQGGPDPESNPRLRTAIEKAKAAN 60

Query: 61  MPKENIERAIKKA-GSDDLGNYTNIRYEGYGPEGVAIIIEALTDNRNRTASSIRSIFTKA 119
           MPK+NIERAIKKA G  D  NY  IRYEGYGP GVAII+EALTDNRNRTAS++RS F K 
Sbjct: 61  MPKDNIERAIKKASGGKDGANYEEIRYEGYGPGGVAIIVEALTDNRNRTASNVRSAFNKN 120

Query: 120 NGSLGSTGSTTRFFEQIGEIIYHSNIGDSNLAMEVAIESDAFEVLFEDQEYIFYCDFNNV 179
            G+LG  GS +  F++ G I+   N  D +  +E AIE+ A +V  ++     Y +  + 
Sbjct: 121 GGNLGEPGSVSYMFDRKGVIVVEKNEIDEDELLEAAIEAGAEDVEEDEGSIEVYTEPEDF 180

Query: 180 GLTSKKLEEKIGEAQSIKVIWKPLNYIRLSNADKVKSIIKMIENLEDDDDVQSVYSNLEI 239
               + LE    E +S ++   P N + L + +  + + K+I+ LEDDDDVQ+VY N EI
Sbjct: 181 NKVKEALEAAGYEIESAELTMIPQNTVEL-DDEDAEKLEKLIDALEDDDDVQNVYHNAEI 239

Query: 240 AD 241
           ++
Sbjct: 240 SE 241


>gnl|CDD|38183 KOG2972, KOG2972, KOG2972, Uncharacterized conserved protein
           [Function unknown].
          Length = 276

 Score =  133 bits (337), Expect = 3e-32
 Identities = 80/249 (32%), Positives = 127/249 (51%), Gaps = 14/249 (5%)

Query: 1   MAGHSQFKNIMHRKERKDALKSKIFSKLSREITVSAKLSGQNPLENPRLRLAIQNAKNQS 60
           M+GH+++  I H+K   D  +SK  +KLS+ I ++ K  G NP  N RL   +++AK  S
Sbjct: 29  MSGHNKWSKIKHKKGANDQARSKQINKLSQGIILAVKQGGANPELNMRLATLLESAKKIS 88

Query: 61  MPKENIERAIKKAGSDDLGNYTNIRYEGYGPEGVAIIIEALTDNRNRTASSIRSIFTKAN 120
           +PK+ IE AI +A   +      I YE  GP GV +I+EALTDN+NR ASSIRSIF K  
Sbjct: 89  VPKDGIENAINRASGKEGSAVEFIEYEAMGPSGVGLIVEALTDNKNRAASSIRSIFNKHG 148

Query: 121 GSLGSTGSTTRFFEQIGEIIY------HSNIGDSNLAMEVAIESDAFEVLFEDQE----- 169
           G   S       F++ G ++         ++ +       A +  A  VL  D+E     
Sbjct: 149 G--ASASGVRFLFDKKGVVVNVPPEKRDKDVLNIEAIEAGAEDIVAEPVLEIDEEEEREE 206

Query: 170 YIFYCDFNNVGLTSKKLEEKIGEAQSIKVIWKPLNYIRLSNADKVKSIIKMIENLEDDDD 229
           +    + +++   + KL  K  E +   + + PL  + +      K I K+I+ L +++D
Sbjct: 207 FKIVTEPSSLNQVAHKLRSKGFEIKDSGLEFIPLEEVEVDVPALEK-IQKLIQALYENED 265

Query: 230 VQSVYSNLE 238
           V  +Y N+ 
Sbjct: 266 VMFIYDNIL 274


>gnl|CDD|37605 KOG2394, KOG2394, KOG2394, WD40 protein DMR-N9 [General function
           prediction only].
          Length = 636

 Score = 28.1 bits (62), Expect = 2.4
 Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 8/91 (8%)

Query: 106 NRTASSI----RSIFTKA-NGSLGSTGSTTRFFEQIGEIIYHSNIGDSN-LAMEVAIESD 159
               +SI     S F  A N S GS  +             HSN           + + D
Sbjct: 77  TPAGTSISETGSSGFRSALNHSSGSGPNNRALAPVGSNGAPHSNANSGIVTNTNQSGKGD 136

Query: 160 AFEVLFEDQEYIFYCDFNNVGLTSKKLEEKI 190
                F     ++   +      SK ++++ 
Sbjct: 137 RL--CFNVGRELYVYSYRGAADLSKPIDKRE 165


>gnl|CDD|29474 cd01062, RNase_T2_prok, Ribonuclease T2 (RNase T2) is a widespread
           family of secreted RNases found in every organism
           examined thus far.  This family includes RNase Rh, RNase
           MC1, RNase LE, and self-incompatibility RNases
           (S-RNases).  Plant T2 RNases are expressed during leaf
           senescence in order to scavenge phosphate from
           ribonucleotides. They are also expressed in response to
           wounding or pathogen invasion. S-RNases are thought to
           prevent self-fertilization by acting as selective
           cytotoxins of "self" pollen. Generally, RNases have two
           distinct binding sites: the primary site (B1 site) and
           the subsite (B2 site), for nucleotides located at the
           5'- and 3'- terminal ends of the sessil bond,
           respectively. This CD includes the prokaryotic RNase T2
           family members..
          Length = 184

 Score = 27.3 bits (60), Expect = 3.6
 Identities = 12/29 (41%), Positives = 13/29 (44%)

Query: 101 LTDNRNRTASSIRSIFTKANGSLGSTGST 129
           L  N   TAS IR  F KAN  L     +
Sbjct: 117 LAGNIGVTASEIRQAFIKANPGLPPDAVS 145


>gnl|CDD|33421 COG3622, Hfi, Hydroxypyruvate isomerase [Carbohydrate transport and
           metabolism].
          Length = 260

 Score = 26.7 bits (59), Expect = 6.0
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 21/79 (26%)

Query: 83  NIRY--EGYGPEGVAIIIEALTDNRNRTASSIRSIFTKANGSLGSTGSTTRFFEQIGEI- 139
           N+RY  +    EG+ ++IE L            ++       L S        +++G   
Sbjct: 125 NLRYAADLLAAEGIRLLIEPL------------NLRDMPGYFLTSQEQALALIDEVGRPN 172

Query: 140 ------IYHSNIGDSNLAM 152
                 +YH+ I + NL  
Sbjct: 173 LFLQLDLYHAQIMEGNLTR 191


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.314    0.132    0.357 

Gapped
Lambda     K      H
   0.267   0.0867    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,694,888
Number of extensions: 134185
Number of successful extensions: 310
Number of sequences better than 10.0: 1
Number of HSP's gapped: 305
Number of HSP's successfully gapped: 17
Length of query: 244
Length of database: 6,263,737
Length adjustment: 91
Effective length of query: 153
Effective length of database: 4,297,318
Effective search space: 657489654
Effective search space used: 657489654
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.1 bits)